Citrus Sinensis ID: 017163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHccccEEEEEEcccccEEEEccHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHHHHcccccccccccccEEccccccHHHHHHHHHHccccEEEEEcccccccccccEEEEEcHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEccEEHHHHccccccccccccccHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEEcHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHHcccccHHHcccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQadvssipivddndslldiysrsDITALAKDKAYAQIHLDEMNIHQALqlgqdanpslgfngqrcqmclrsdpLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Flexible Loop (DISEMBL)
mvpntispetsgnmevdDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSsipivddndslLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMErlanpgvrRLVIVEagskrvegiislsdVFRFLLGV
Low Complexity Region (SEG)
MVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered region (IsUnstruct)
*********************************LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL**
Disordered Region (DISOPRED)
***************************************RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL*QD*****GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISEMBL)
**********SGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISPRO)
***************VDDVV*****FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.994	0.767	0.752	1e-161
P58108	330	5'-AMP-activated protein	yes	no	0.779	0.887	0.320	2e-33
Q09138	330	5'-AMP-activated protein	yes	no	0.779	0.887	0.320	2e-33
P54619	331	5'-AMP-activated protein	yes	no	0.779	0.885	0.320	2e-33
O54950	330	5'-AMP-activated protein	yes	no	0.779	0.887	0.320	4e-33
P80385	330	5'-AMP-activated protein	yes	no	0.779	0.887	0.317	5e-33
Q8T277	577	5'-AMP-activated protein	yes	no	0.829	0.540	0.292	8e-31
Q91WG5	566	5'-AMP-activated protein	no	no	0.773	0.514	0.301	3e-30
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.773	0.511	0.301	9e-30
Q5R4S0	524	5'-AMP-activated protein	no	no	0.773	0.555	0.298	3e-29

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  566 bits (1459), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/384 (75%), Positives = 325/384 (84%), Gaps = 10/384 (2%)

Query: 1   MVPNTISPETSG--NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYEL 53
           MVP   SPET G  NM+VDDV +R      E   + S  DL+LSR RIS  LST T YEL
Sbjct: 106 MVPAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYEL 165

Query: 54  LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 113
           LP+SGKV ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+
Sbjct: 166 LPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTH 225

Query: 114 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 173
           GSNLTEEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQN
Sbjct: 226 GSNLTEEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQN 283

Query: 174 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233
           KVA VP+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWV
Sbjct: 284 KVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWV 343

Query: 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293
           PRIGE++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDK
Sbjct: 344 PRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDK 403

Query: 294 AYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
           AYAQIHLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVI
Sbjct: 404 AYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVI 463

Query: 353 VEAGSKRVEGIISLSDVFRFLLGV 376
           VEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 464 VEAGSKRVEGIISLSDVFQFLLGL 487

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 42  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 101
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 102 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDENDV-VKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 42  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 101
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 102 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 42  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 101
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 102 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 42  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 101
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 102 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188

Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLQELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239

Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 289

Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 42  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 101
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 102 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188

Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239

Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIIN 289

Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  134 bits (338), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 172/349 (49%), Gaps = 37/349 (10%)

Query: 30  SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 89
           +E  ++  +    +FL  HT Y+++P SGKV  LD  LAVK AF+ L E G+   PLW+ 
Sbjct: 256 TEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNS 315

Query: 90  FKGRFVGVLSALDFI-LILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNG 147
            +  F G+++  DFI ++L       SN   +++  H I   W+    +++++R      
Sbjct: 316 EQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWR----EISVER------ 365

Query: 148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 207
              P  L+   P  +L + A  +L  K+  +P++           IL++ + S IL  + 
Sbjct: 366 ---PSSLISTEPETNLYDAASLLLCYKIHRLPVVD----KKDTNSILHILTHSRILAFMM 418

Query: 208 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 267
           + F      L  L  P+ S+ +GT+   +      P         L   L LL +  +S+
Sbjct: 419 KSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP---------LVEVLELLSEKKISA 467

Query: 268 IPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 326
           +PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L         L    ++ 
Sbjct: 468 VPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS----TFTKLWQRPEQI 522

Query: 327 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375
             C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  +LL 
Sbjct: 523 YTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 44  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 103
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 104 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 163
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 321 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 367

Query: 164 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 223
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 368 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 421

Query: 224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 283
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 422 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 472

Query: 284 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 343
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 473 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSKLETLETIVDRIV 522

Query: 344 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 523 RAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 44  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 103
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 104 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 163
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 324 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 370

Query: 164 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 223
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 371 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 424

Query: 224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 283
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 425 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 475

Query: 284 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 343
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 476 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 525

Query: 344 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 526 RAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 162/332 (48%), Gaps = 41/332 (12%)

Query: 44  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 103
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 104 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 163
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 279 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 325

Query: 164 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 223
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 326 LDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 379

Query: 224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 283
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 380 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 430

Query: 284 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 343
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 431 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 480

Query: 344 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              V RLV+  EA S  + GIISLSD+ + L+
Sbjct: 481 RAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.989	0.771	0.783	1e-165
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.986	0.760	0.766	1e-163
255542654	540	AMP-activated protein kinase, gamma regu	0.968	0.674	0.779	1e-160
9965729	382	putative activator subunit of SNF1-relat	0.994	0.979	0.752	1e-159
224123752	475	predicted protein [Populus trichocarpa]	0.989	0.783	0.748	1e-159
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.994	0.767	0.752	1e-159
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.986	0.774	0.757	1e-158
312281727	487	unnamed protein product [Thellungiella h	0.994	0.767	0.742	1e-156
224123152	488	predicted protein [Populus trichocarpa]	0.989	0.762	0.727	1e-156
356573006	478	PREDICTED: sucrose nonfermenting 4-like	0.981	0.771	0.703	1e-145

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 297/379 (78%), Positives = 329/379 (86%), Gaps = 7/379 (1%)

Query: 1   MVPNTISPETSG--NMEVD-DVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDS 57
           +VP   SP+T G  NM++D D   R E   + SEADL++SR R+S FLSTH  YELLP+S
Sbjct: 107 VVPAVFSPDTPGGSNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPES 166

Query: 58  GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 117
           GKV ALDVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNL
Sbjct: 167 GKVIALDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNL 226

Query: 118 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 177
           TEEELETHTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVAT
Sbjct: 227 TEEELETHTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVAT 283

Query: 178 VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIG 237
           VPIIHS    GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IG
Sbjct: 284 VPIIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIG 343

Query: 238 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ 297
           E+NG+PFAMLRP ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQ
Sbjct: 344 ESNGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQ 403

Query: 298 IHLDEMNIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 356
           IHLD M+IHQALQLGQDAN   GF +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG
Sbjct: 404 IHLDNMSIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 463

Query: 357 SKRVEGIISLSDVFRFLLG 375
           SKRVEG+ISLSDVFRFLLG
Sbjct: 464 SKRVEGVISLSDVFRFLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/386 (76%), Positives = 329/386 (85%), Gaps = 15/386 (3%)

Query: 1   MVPNTISPETSG--NMEVDDVVMRPEG--------FAQYSEADLQLSRDRISSFLSTHTV 50
           +VP   SP+T G  NM++D+    P G          + SEADL++SR R+S FLSTH  
Sbjct: 107 VVPAVFSPDTPGGSNMDLDNDPF-PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIA 165

Query: 51  YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL 110
           YELLP+SGKV ALDVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILREL
Sbjct: 166 YELLPESGKVIALDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILREL 225

Query: 111 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKI 170
           G +GSNLTEEELETHTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKI
Sbjct: 226 GNHGSNLTEEELETHTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKI 282

Query: 171 LQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 230
           LQNKVATVPIIHS    GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +G
Sbjct: 283 LQNKVATVPIIHSASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVG 342

Query: 231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 290
           TWVP+IGE+NG+PFAMLRP ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALA
Sbjct: 343 TWVPKIGESNGQPFAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALA 402

Query: 291 KDKAYAQIHLDEMNIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRR 349
           KD+AYAQIHLD M+IHQALQLGQDAN   GF +GQRCQMCLRSDPLHKVMERLANPGVRR
Sbjct: 403 KDRAYAQIHLDNMSIHQALQLGQDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRR 462

Query: 350 LVIVEAGSKRVEGIISLSDVFRFLLG 375
           LVIVEAGSKRVEG+ISLSDVFRFLLG
Sbjct: 463 LVIVEAGSKRVEGVISLSDVFRFLLG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/368 (77%), Positives = 324/368 (88%), Gaps = 4/368 (1%)

Query: 1   MVPNTISPETSG-NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGK 59
           MVP   + ET+G NME+D+V +RPE   + SEADL++SR R S+FLSTHT YELLP+SGK
Sbjct: 102 MVPPIPNSETAGSNMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGK 161

Query: 60  VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 119
           V ALDVNL VKQAFHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTE
Sbjct: 162 VIALDVNLPVKQAFHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTE 221

Query: 120 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 179
           EELETHTISAWK GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+P
Sbjct: 222 EELETHTISAWKEGKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTIP 279

Query: 180 IIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 239
           IIHS+   GS  ++L+LASLS ILKCICRHF+HS+SSLP+LQQP+ SI LGTWVP+IGE+
Sbjct: 280 IIHSSSRDGSFPQLLHLASLSGILKCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGES 339

Query: 240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH 299
           N RPFAMLRP ASLG AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH
Sbjct: 340 NVRPFAMLRPNASLGDALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH 399

Query: 300 LDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 358
           LD+++IHQALQLGQDAN   G FNGQRCQMCL SDPLHKVMERLANPGVRRL+IVEAGSK
Sbjct: 400 LDKISIHQALQLGQDANSPYGFFNGQRCQMCLGSDPLHKVMERLANPGVRRLLIVEAGSK 459

Query: 359 RVEGIISL 366
           RVEG+ISL
Sbjct: 460 RVEGVISL 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9965729|gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4 [Arabidopsis thaliana]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/384 (75%), Positives = 325/384 (84%), Gaps = 10/384 (2%)

Query: 1   MVPNTISPETSG--NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYEL 53
           MVP   SPET G  NM+VDDV +R      E   + S  DL+LSR RIS  LST T YEL
Sbjct: 1   MVPAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYEL 60

Query: 54  LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 113
           LP+SGKV ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+
Sbjct: 61  LPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTH 120

Query: 114 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 173
           GSNLTEEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQN
Sbjct: 121 GSNLTEEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQN 178

Query: 174 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233
           KVA VP+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWV
Sbjct: 179 KVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWV 238

Query: 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293
           PRIGE++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDK
Sbjct: 239 PRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDK 298

Query: 294 AYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
           AYAQIHLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVI
Sbjct: 299 AYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVI 358

Query: 353 VEAGSKRVEGIISLSDVFRFLLGV 376
           VEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 359 VEAGSKRVEGIISLSDVFQFLLGL 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/377 (74%), Positives = 325/377 (86%), Gaps = 5/377 (1%)

Query: 3   PNTISPETSG--NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKV 60
           P  ++ ET G  NME+DDV + PE     S  +L++SR RIS+FLSTHT YELLP+SGKV
Sbjct: 101 PQILNSETPGRSNMELDDVSVCPEVIQGISATELEVSRHRISAFLSTHTAYELLPESGKV 160

Query: 61  TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE 120
            ALDV L VKQAFH+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEE
Sbjct: 161 IALDVTLPVKQAFHILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEE 220

Query: 121 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPI 180
           ELETHTISAWK GK+ LN  RQ+DG+GR   + L+ AGPYDS+K+V+LKILQN V+TVPI
Sbjct: 221 ELETHTISAWKEGKMHLN--RQIDGSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTVPI 278

Query: 181 IHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN 240
           IHS    GS  ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N
Sbjct: 279 IHSASQDGSFPQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPN 338

Query: 241 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 300
            RPFAMLRP ASLG+AL+LL QA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIHL
Sbjct: 339 RRPFAMLRPNASLGAALSLLAQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHL 398

Query: 301 DEMNIHQALQLGQDANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 359
           DE++IHQALQLGQ+AN S  F NGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGSKR
Sbjct: 399 DEISIHQALQLGQNANSSNAFYNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKR 458

Query: 360 VEGIISLSDVFRFLLGV 376
           VEG+ISLSDVFRFLLG+
Sbjct: 459 VEGVISLSDVFRFLLGI 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 289/384 (75%), Positives = 325/384 (84%), Gaps = 10/384 (2%)

Query: 1   MVPNTISPETSG--NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYEL 53
           MVP   SPET G  NM+VDDV +R      E   + S  DL+LSR RIS  LST T YEL
Sbjct: 106 MVPAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYEL 165

Query: 54  LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 113
           LP+SGKV ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+
Sbjct: 166 LPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTH 225

Query: 114 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 173
           GSNLTEEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQN
Sbjct: 226 GSNLTEEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQN 283

Query: 174 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233
           KVA VP+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWV
Sbjct: 284 KVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWV 343

Query: 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293
           PRIGE++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDK
Sbjct: 344 PRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDK 403

Query: 294 AYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
           AYAQIHLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVI
Sbjct: 404 AYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVI 463

Query: 353 VEAGSKRVEGIISLSDVFRFLLGV 376
           VEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 464 VEAGSKRVEGIISLSDVFQFLLGL 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 287/379 (75%), Positives = 324/379 (85%), Gaps = 8/379 (2%)

Query: 1   MVPNTISPETSG--NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSG 58
           MVP   SPET G  NM+VDDV +R    A  S  DL++SR RIS  LST T YELLP+SG
Sbjct: 106 MVPAGFSPETLGRSNMDVDDVFLRT---ADPSGVDLEVSRHRISVLLSTRTAYELLPESG 162

Query: 59  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 118
           KV ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLT
Sbjct: 163 KVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLT 222

Query: 119 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 178
           EEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA V
Sbjct: 223 EEELETHTIAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAV 280

Query: 179 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 238
           P+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE
Sbjct: 281 PVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGE 340

Query: 239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 298
           ++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQI
Sbjct: 341 SSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQI 400

Query: 299 HLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 357
           HLD+M +HQALQLGQD++P  G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGS
Sbjct: 401 HLDDMTVHQALQLGQDSSPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGS 460

Query: 358 KRVEGIISLSDVFRFLLGV 376
           KRVEGIISLSDVF+FLLG+
Sbjct: 461 KRVEGIISLSDVFQFLLGL 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 285/384 (74%), Positives = 322/384 (83%), Gaps = 10/384 (2%)

Query: 1   MVPNTISPETSG--NMEVDDVVMR-----PEGFAQYSEADLQLSRDRISSFLSTHTVYEL 53
           MVP    PET G  NM+VD V  R      E   + S  DL++SR RIS  LST T YEL
Sbjct: 106 MVPTGFIPETLGRENMDVDGVFPRMTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYEL 165

Query: 54  LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 113
           LP+SGKV ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+
Sbjct: 166 LPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTH 225

Query: 114 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 173
           GSNLTEEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQN
Sbjct: 226 GSNLTEEELETHTIAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQN 283

Query: 174 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233
           KVA VP+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWV
Sbjct: 284 KVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWV 343

Query: 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293
           PRIGE++ +P A LRP ASLGSAL+LLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDK
Sbjct: 344 PRIGESSSKPLATLRPHASLGSALSLLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDK 403

Query: 294 AYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
           AYAQIHLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVI
Sbjct: 404 AYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLLKVMERLANPGVRRLVI 463

Query: 353 VEAGSKRVEGIISLSDVFRFLLGV 376
           VEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 464 VEAGSKRVEGIISLSDVFQFLLGL 487

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123152|ref|XP_002319007.1| predicted protein [Populus trichocarpa] gi|222857383|gb|EEE94930.1| predicted protein [Populus trichocarpa]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/389 (72%), Positives = 324/389 (83%), Gaps = 17/389 (4%)

Query: 3   PNTISPETSG--NMEVDD------------VVMRPEGFAQYSEADLQLSRDRISSFLSTH 48
           P  I  ET G  NME+DD            V    E     S ADL++SR RIS+FLSTH
Sbjct: 101 PQIIDSETPGRSNMELDDYFFIGAELVTLLVGTFQEVIQGMSAADLEVSRHRISAFLSTH 160

Query: 49  TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 108
           T YELLP+SGKV ALDV L VK+AFH+LYEQG+P  PLWD  KG+FVGVL+ALDFILILR
Sbjct: 161 TAYELLPESGKVIALDVTLPVKRAFHILYEQGIPTAPLWDFCKGQFVGVLAALDFILILR 220

Query: 109 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 168
           ELGT+GSNLTEEELETHTISAWK GK+ L+  RQ+DG+GR   + L+ AGPYDSLK+VA 
Sbjct: 221 ELGTHGSNLTEEELETHTISAWKEGKMHLS--RQIDGSGRAYSKHLIHAGPYDSLKDVAS 278

Query: 169 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 228
           KILQN ++TVPI+HS+   GS  ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI 
Sbjct: 279 KILQNSISTVPILHSSAQDGSFPQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIP 338

Query: 229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288
           LGTWVP+IGE N RPFAML+P ASLG+AL+LLVQA+VSSIPIV+DNDSLLD+YSRSDITA
Sbjct: 339 LGTWVPKIGEPNRRPFAMLKPNASLGAALSLLVQANVSSIPIVNDNDSLLDVYSRSDITA 398

Query: 289 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGV 347
           LAKDKAYAQIHLDE++IHQALQLGQDAN S G FNGQRCQMCLR+D LHKVMERLANPGV
Sbjct: 399 LAKDKAYAQIHLDEISIHQALQLGQDANSSYGFFNGQRCQMCLRTDSLHKVMERLANPGV 458

Query: 348 RRLVIVEAGSKRVEGIISLSDVFRFLLGV 376
           RRL+IVEAGSKRVEG+ISLSDVFRFLLGV
Sbjct: 459 RRLLIVEAGSKRVEGVISLSDVFRFLLGV 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573006|ref|XP_003554656.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Glycine max]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 266/378 (70%), Positives = 313/378 (82%), Gaps = 9/378 (2%)

Query: 1   MVPNTISPETSG--NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSG 58
           ++P+ ++ ET G  +MEVD++   P    +   +DL++SR RIS FLSTHT Y LLP+SG
Sbjct: 107 ILPSILNTETPGRSHMEVDNMEANP----RMPVSDLEVSRHRISVFLSTHTAYNLLPESG 162

Query: 59  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 118
           KV ALD+NL VKQAFHVLYEQG+ M PLWD FK +FVGVLSA+DFILIL+ELG +GSNLT
Sbjct: 163 KVIALDINLPVKQAFHVLYEQGVSMAPLWDFFKSQFVGVLSAMDFILILKELGNHGSNLT 222

Query: 119 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 178
           +E+LETHTI+AWK GK Q    R +D NG   P   V AGP++ LK+VALK+LQNKV+TV
Sbjct: 223 QEQLETHTIAAWKEGKFQQ--FRTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTV 280

Query: 179 PIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 238
           PIIHS+   GS  ++L+LASLS ILK ICRHFKHS SSLPILQ PV+SI LGTW+PR+GE
Sbjct: 281 PIIHSSSEDGSYPQLLHLASLSGILKGICRHFKHSLSSLPILQLPVASIPLGTWMPRVGE 340

Query: 239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI 298
            NGRP AML P+ASLG+AL++ VQA VSSIPIVD NDSLLDIYSRSDITALAKDKAYA+I
Sbjct: 341 PNGRPLAMLMPSASLGAALSMFVQAKVSSIPIVDANDSLLDIYSRSDITALAKDKAYARI 400

Query: 299 HLDEMNIHQALQLGQDA-NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS 357
            LDE++IHQAL LGQDA +PS  +NGQRC MCLRS+ L+KVMERLANPGVRRLV+VEAGS
Sbjct: 401 SLDEISIHQALLLGQDATSPSGIYNGQRCHMCLRSESLYKVMERLANPGVRRLVVVEAGS 460

Query: 358 KRVEGIISLSDVFRFLLG 375
           KRVEGIISLSDVFRFLLG
Sbjct: 461 KRVEGIISLSDVFRFLLG 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.994	0.767	0.755	3.5e-146
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.521	0.601	0.285	3.1e-30
ZFIN|ZDB-GENE-060421-6938	342	zgc:136850 "zgc:136850" [Danio	0.433	0.476	0.327	8.5e-29
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.521	0.371	0.285	9.1e-29
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.521	0.346	0.285	1.6e-28
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.518	0.345	0.284	3e-28
UNIPROTKB|Q9UGJ0	569	PRKAG2 "5'-AMP-activated prote	0.521	0.344	0.285	3.7e-28
DICTYBASE|DDB_G0272542	577	prkag "AMP-activated protein k	0.438	0.285	0.311	2.8e-26
UNIPROTKB|F1P1P1	382	PRKAG3 "Uncharacterized protei	0.521	0.513	0.258	1.3e-24
CGD|CAL0001497	336	SNF4 [Candida albicans (taxid:	0.507	0.568	0.262	4.5e-18

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 290/384 (75%), Positives = 326/384 (84%)

Query:     1 MVPNTISPETSG--NMEVDDVVMR---P--EGFAQYSEADLQLSRDRISSFLSTHTVYEL 53
             MVP   SPET G  NM+VDDV +R   P  E   + S  DL+LSR RIS  LST T YEL
Sbjct:   106 MVPAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYEL 165

Query:    54 LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN 113
             LP+SGKV ALDVNL VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+
Sbjct:   166 LPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTH 225

Query:   114 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN 173
             GSNLTEEELETHTI+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQN
Sbjct:   226 GSNLTEEELETHTIAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQN 283

Query:   174 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 233
             KVA VP+I+S+   GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWV
Sbjct:   284 KVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWV 343

Query:   234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK 293
             PRIGE++ +P A LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDK
Sbjct:   344 PRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDK 403

Query:   294 AYAQIHLDEMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
             AYAQIHLD+M +HQALQLGQDA+P  G FNGQRC MCLRSD L KVMERLANPGVRRLVI
Sbjct:   404 AYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVI 463

Query:   353 VEAGSKRVEGIISLSDVFRFLLGV 376
             VEAGSKRVEGIISLSDVF+FLLG+
Sbjct:   464 VEAGSKRVEGIISLSDVFQFLLGL 487

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 3.1e-30, Sum P(2) = 3.1e-30
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   116 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 169

Query:   212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   170 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 220

Query:   272 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 331
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   221 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 270

Query:   332 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   271 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 312

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

ZFIN|ZDB-GENE-060421-6938 zgc:136850 "zgc:136850" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 8.5e-29, Sum P(2) = 8.5e-29
 Identities = 61/186 (32%), Positives = 86/186 (46%)

Query:     3 PNTISPETSGN-MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVT 61
             P T+ P T    ME + + M+  G  Q  +AD+       + F  +H  Y+ +P S K+ 
Sbjct:     4 PQTMDPLTEFPFMEDEGLTMKRTGPLQDPDADVY------AKFFMSHCCYDAIPTSSKLV 57

Query:    62 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE-E 120
               D  L VK+AF  L   G+   PLWDD    FVG+L+  DFI IL       S L +  
Sbjct:    58 VFDTTLQVKKAFFALVANGVRAAPLWDDKLQCFVGMLTITDFINILHRYYK--SPLVQIY 115

Query:   121 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPI 180
             ELE H I  W+   LQ ++              L+   P  SL E    +L+NK+  +P+
Sbjct:   116 ELEEHKIETWRETYLQYSVTS------------LISIAPDSSLFEAIYSLLKNKIHRLPV 163

Query:   181 IH-STG 185
             I   TG
Sbjct:   164 IDPETG 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 9.1e-29, Sum P(2) = 9.1e-29
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   318 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 371

Query:   212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   372 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 422

Query:   272 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 331
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   423 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 472

Query:   332 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   473 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 514

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   356 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 409

Query:   212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   410 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 460

Query:   272 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 331
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   461 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 510

Query:   332 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
 Identities = 64/225 (28%), Positives = 116/225 (51%)

Query:   152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   355 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFM 408

Query:   212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                     +++ +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   409 SEMPKPAFMKKNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 459

Query:   272 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ-RCQMCL 330
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G  +C M  
Sbjct:   460 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEGVVKCSML- 510

Query:   331 RSDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
               + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 --ETLETIVDRIVKAEVHRLVVVNEADS--IVGIISLSDILQALV 551

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q9UGJ0 PRKAG2 "5'-AMP-activated protein kinase subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   359 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 412

Query:   212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   413 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 463

Query:   272 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 331
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   464 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNK 513

Query:   332 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 374
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   514 LEILETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IMP

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IMP

GO:0008607 "phosphorylase kinase regulator activity" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IDA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0046324 "regulation of glucose import" evidence=TAS

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0016126 "sterol biosynthetic process" evidence=TAS

GO:0019217 "regulation of fatty acid metabolic process" evidence=IMP

DICTYBASE|DDB_G0272542 prkag "AMP-activated protein kinase gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
 Identities = 57/183 (31%), Positives = 93/183 (50%)

Query:   193 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 252
             IL++ + S IL  + + F      L  L  P+ S+ +GT+   +      P         
Sbjct:   404 ILHILTHSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP--------- 452

Query:   253 LGSALALLVQADVSSIPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 311
             L   L LL +  +S++PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L  
Sbjct:   453 LVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS- 510

Query:   312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 371
                    L    ++   C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  
Sbjct:   511 ---TFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILN 566

Query:   372 FLL 374
             +LL
Sbjct:   567 YLL 569

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1P1P1 PRKAG3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 58/224 (25%), Positives = 116/224 (51%)

Query:   152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +PLV   P DSL +    ++++K+  +P+I     +G+   +L++ +   ILK +  H  
Sbjct:   175 KPLVYISPSDSLFDAVYSLIKHKIHRLPVIEPI--SGN---VLHILTHKRILKFL--HIF 227

Query:   212 HSSSSLP-ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 270
              S+   P  L++ V  + +GT+         R  A++   A + +AL + V   VS++P+
Sbjct:   228 GSTIPKPRFLKKTVQELCVGTF---------RDVAVVPENAPVYAALEIFVDRRVSALPV 278

Query:   271 VDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL 330
             V+    ++ +YSR D+  LA  K Y  +   ++++ +AL+       ++   G     C 
Sbjct:   279 VNAAGQVVGLYSRFDVIHLAAQKTYNNL---DISVREALR-----QRTVCLEG--VLTCY 328

Query:   331 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
               + +  +++R+A   V RLV+V+  ++   GI+SLSD+ + L+
Sbjct:   329 PHETMEDIIDRIAEEQVHRLVLVDE-NRYPRGIVSLSDILQALV 371

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

CGD|CAL0001497 SNF4 [Candida albicans (taxid:5476)]

 Score = 152 (58.6 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
 Identities = 57/217 (26%), Positives = 102/217 (47%)

Query:   159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 218
             P+ SL E  +K+L++K   +P+I         + ++ + +   ILK +  + K +     
Sbjct:   141 PFKSLYEACVKMLESKARRIPLIDEDEKTKR-EIVVSVLTQYRILKFVALNCKETK---- 195

Query:   219 ILQQPVSSIQ-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 277
             +L +P+ ++  LG  V ++         M  P   +   + LL +  VSSIPIVD    L
Sbjct:   196 MLLKPLKNLSGLGD-VKKLSTCT-----MDTPVIEV---IHLLTENSVSSIPIVDGQGKL 246

Query:   278 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 337
             +++Y   DI AL K   Y  +   ++++  AL        S  F G     C  +D L  
Sbjct:   247 INVYEAVDILALVKGGMYTDL---DLSVGDAL-----LRRSEEFEG--VHTCTLNDRLST 296

Query:   338 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
             +M+ +    + RL +V+   K V  +I+LSD+  ++L
Sbjct:   297 IMDTIRKSRLHRLFVVDDEGKLVS-VITLSDILNYIL 332

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005641 "nuclear envelope lumen" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.7526	0.9946	0.7679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-36
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	1e-19
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	4e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-05
pfam00571	57	pfam00571, CBS, CBS domain	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-05
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	7e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	8e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	3e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	6e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	9e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.002
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.003
pfam00571	57	pfam00571, CBS, CBS domain	0.003
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.004
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.004
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.004
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.004

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  128 bits (325), Expect = 1e-36
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 17/134 (12%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
           +  A  RP   L   L +LV+  VS++PIVD+N  ++D+YSR D+  LAK+ AY  + L 
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 302 EMNIHQALQLGQDANPSLGFNG-QRCQ--MCLRSDPLHKVMERLANPGVRRLVIVEAGSK 358
                +AL+          F G + C    CLR+     V  R     V RLV+V+   K
Sbjct: 61  VG---EALERRSQ-----DFEGVRTCSPDDCLRTIFDLIVKAR-----VHRLVVVDEN-K 106

Query: 359 RVEGIISLSDVFRF 372
           RVEGIISLSD+ +F
Sbjct: 107 RVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 58  GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 117
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 118 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 177
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 178 VPIIHSTGPAGSCQEILYLASLSDILK 204
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 300
           R    + P  ++  AL L+++  +S +P+VDD+  L+ I +  D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 301 DEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 360
            ++     + +  D                    L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVVTVSPD------------------TSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 361 EGIISLSDVFRF 372
            GI++ SD+ R 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
           R +V   P D++ E    +L++ ++ +P++   G       ++ + +  D+L+ +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG------RLVGIVTERDLLRALAEGGL 54

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                                   +G+   R    + P  SL  A  L+++  +  +P+V
Sbjct: 55  DPL-------------------VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 272 DDNDSLLDIYSRSDI 286
           DD   L+ I +RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286
               + P  +L  AL LL +  +  +P+VD+   L+ I +R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 248 RPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIH 306
           RP A++  A  L+ + ++ ++ +VDD   L+ I+S  DI   +A   A A     +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA----LDTPVS 62

Query: 307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 366
           + +      N                D + + M  +     R L +V+ G  ++ GI+S+
Sbjct: 63  EIMT----RNV---------ITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 367 SDVFRF 372
            DV + 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 249 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 308
              ++   LAL+        P+VDD   L+ I + +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 368
                 A+P               + L   ++R+A   + RL +V+  S R+ GI+S SD
Sbjct: 66  PVT---ASPD--------------ETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 369 VFRF 372
           + R 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286
                + P  SL  AL L+ +  +S +P+VD++  L+ I +  D+
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 27/133 (20%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 300
           +P   L P A+L  A  L     +   P+VDD   L+ I + SDI  A+A+    A++  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVK- 58

Query: 301 DEM--NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 358
           D M  ++        D +  L             D +  + +      V RL++ +   +
Sbjct: 59  DVMTKDVITI-----DEDEQL------------YDAIRLMNKH----NVGRLIVTDDEGR 97

Query: 359 RVEGIISLSDVFR 371
            V GII+ +D+ R
Sbjct: 98  PV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
           +    ++P  S+  AL L+ +  VS++P+VDD   L+ I +  DI           + + 
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVK 65

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA-NPGVRRLVIVEAGSKRV 360
           E+     + +  D                   PL + +E +     +RRL +V+    ++
Sbjct: 66  EVMTKPVVTVDPD------------------TPLEEALELMVERHKIRRLPVVDDDGGKL 107

Query: 361 EGIISLSDVF 370
            GII+LSD+ 
Sbjct: 108 VGIITLSDIL 117

Length = 117

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 305
           L  T  L  A   L+++   S  +VD +  ++ I +  D+  AL  D+A     +DE+  
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVAT 65

Query: 306 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK-RVEGII 364
              L +  D                  +PL   ++R+A+ G+R+L +V+ G+  +V G++
Sbjct: 66  PPLLTVHPD------------------EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLL 107

Query: 365 SLSDV 369
           +  +V
Sbjct: 108 TRENV 112

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 245 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE 302
             + P  ++  A  L+ + DV ++P+ + ND L+ I +  DI   A+A+ +      + +
Sbjct: 4   VTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGD 62

Query: 303 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 362
           +     +                       D + +    +    VRRL +V+    R+ G
Sbjct: 63  VMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVG 103

Query: 363 IISLSDV 369
           I+SL D+
Sbjct: 104 IVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
           + ++   P  ++ E A  + +N +  + ++ +  P G   E        D++K      K
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITE-------RDLVK------K 47

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
             S +L   + PV            GE    P   + P ASL  A  L+ +  +  +P+V
Sbjct: 48  VVSRNLKPREVPV------------GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95

Query: 272 DDNDSLLDIYSRSDIT 287
           DD D L+ I + +DI 
Sbjct: 96  DD-DELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 299
           RP     P  ++  A  L+ +  VSS+ +V D+  L+ I +  D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDPDTP- 58

Query: 300 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 359
           + E+     + +  DA                 + L  ++ER    G+  L +V+ G  R
Sbjct: 59  VSEVMTAPPITIPPDA--------------TVFEALLLMLER----GIHHLPVVDDG--R 98

Query: 360 VEGIISLSDVFRF 372
           + G+IS +D+ R 
Sbjct: 99  LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 331 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
            +  L + +E L + G+ R+ + E  S  V GI+S   +  FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 256 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 315
           A  L+ + ++S +P+VD+   L+   S SD+  L          L    I          
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL---LLSPDDLLLYRTITFKELSE--K 69

Query: 316 NPSLGFNGQRCQM-CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 372
                    R  + C  S  L +V+ +L    V R+ +V+   K   G+I+L+D+   
Sbjct: 70  FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286
           + P A++  AL L+ +  +S +P+VDD+  L+ I +  D+
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 155 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH--FKH 212
           V   P   + E A  +++N    +P++          +++ + + +DILK +     F  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDE-----GTGKLVGIITATDILKYLGGGEKFNK 58

Query: 213 SSS--SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 270
             +   L  + +PV SI              R    + P  S+  A  L+++  V  +P+
Sbjct: 59  IKTGNGLEAINEPVRSIMT------------RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 271 VDDNDSLLDIYSRSDI 286
           VDD+  L+ I +  D+
Sbjct: 107 VDDDGKLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 59  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 118
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 119 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 178
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 179 PIIHSTGPAGSCQEILYLASLSDILK 204
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 332 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375
              L + +E +   G+ RL +V     ++ GI++L D+ R LL 
Sbjct: 15  DTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286
             +G+   R      P  +L  AL  + + D+  +P+VDD+  L+ I SRSD+
Sbjct: 56  VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286
                + P   +  A  L+++A++S +P+V DND+++ + +++DI
Sbjct: 89  EEIITVSPNDDVVDAAKLMLEANISGLPVV-DNDNIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
                  P  SL  A + + +  +SSI +V D+   L I +  DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 302 EMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV-EAGSKR 359
                  L  G D    +G               L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 360 VEGIISLSDVFR 371
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 286
           P   + P  S+ +A+ L+++ D+  +P+V++ D L+ I  R D+
Sbjct: 76  PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
COG2524	294	Predicted transcriptional regulator, contains C-te	99.8
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.71
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.71
COG2524	294	Predicted transcriptional regulator, contains C-te	99.71
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.68
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.65
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.64
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.64
COG3620	187	Predicted transcriptional regulator with C-termina	99.63
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.61
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.61
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.61
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.6
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.6
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.59
COG2905	610	Predicted signal-transduction protein containing c	99.59
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.58
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.58
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.57
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.56
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.56
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.55
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.55
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.55
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.55
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.55
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.55
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.55
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.55
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.55
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.54
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.54
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.54
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.54
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.54
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.54
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.54
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.53
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.53
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.53
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.53
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.53
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.53
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.53
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.52
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.51
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.51
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.51
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.51
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.51
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.51
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.51
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.51
COG3620	187	Predicted transcriptional regulator with C-termina	99.5
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.5
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.5
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.5
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.5
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.5
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.5
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.5
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.49
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.49
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.49
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.49
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.49
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.48
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.48
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.47
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.47
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.47
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.46
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.46
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.46
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.46
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.45
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.45
COG0517	117	FOG: CBS domain [General function prediction only]	99.44
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.44
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.43
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.43
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.43
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.43
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.43
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.42
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.42
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.42
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.42
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.42
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.42
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.42
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.42
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.41
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.41
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.4
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.4
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.4
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.4
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.39
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.39
COG4109	432	Predicted transcriptional regulator containing CBS	99.39
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.39
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.38
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.37
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.37
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.37
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.37
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.36
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.36
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.36
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.36
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.35
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.35
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.35
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.35
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.35
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.35
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.35
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.34
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.34
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.34
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.34
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.33
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.33
COG0517	117	FOG: CBS domain [General function prediction only]	99.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.33
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.33
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.32
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.32
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.32
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.31
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.31
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.3
COG2905	610	Predicted signal-transduction protein containing c	99.3
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.3
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.3
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.3
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.29
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.29
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.29
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.28
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.28
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.28
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.28
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.27
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.27
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.26
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.26
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.26
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.26
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.25
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.25
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.25
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.25
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.24
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.23
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.21
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.2
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.18
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.15
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.15
COG4109	432	Predicted transcriptional regulator containing CBS	99.14
PRK11573	413	hypothetical protein; Provisional	99.12
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.1
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.09
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.05
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.05
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.03
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.0
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.0
PRK11573	413	hypothetical protein; Provisional	98.99
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.93
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.73
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.68
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.54
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.54
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.52
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.48
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.45
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.43
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.35
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.35
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.32
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.18
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.12
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.97
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.93
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.88
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.71
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.38
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.19
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.88
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.46
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.11
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.13
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.84
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	92.42

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=1.4e-38  Score=303.08  Aligned_cols=303  Identities=30%  Similarity=0.543  Sum_probs=261.6

Q ss_pred             HHHHHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCC
Q 017163           37 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  116 (376)
Q Consensus        37 ~~~~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~  116 (376)
                      +...+..|++.++||+.+|.+++++++|...++.+||++|..++.+++|+||..+++|+|++++.||+.++..++..+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999988874221


Q ss_pred             C-CHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 017163          117 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  195 (376)
Q Consensus       117 ~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~g  195 (376)
                      . ..+.+++..+..|++.....+         ....++++.+.|..++.++...+.+++++++||.|  .+.+   .+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~  200 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY  200 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence            1 123444445555554322211         12345559999999999999999999999999996  4567   8999


Q ss_pred             eeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCC
Q 017163          196 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  275 (376)
Q Consensus       196 iit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g  275 (376)
                      ++|++.|+++++.+.+..+ ...++..++.++.+|+|.         .+..+..++++.+|+++|.+++++++||||++|
T Consensus       201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g  270 (381)
T KOG1764|consen  201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG  270 (381)
T ss_pred             ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence            9999999999999887765 457889999999999996         689999999999999999999999999999999


Q ss_pred             cEEEEEeHHHHHHHHhccccccccccccc-HHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEe
Q 017163          276 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  354 (376)
Q Consensus       276 ~lvGiis~~Di~~~~~~~~~~~~~~~~~~-v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd  354 (376)
                      +.+|+++..|+..+..++.|....   .+ +.+++..+.       .-..++++|.+++||.+++++|..+++||+||||
T Consensus       271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence            999999999999999988887664   55 778776654       2334589999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHHHHh
Q 017163          355 AGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       355 ~~~~~~~GvIs~~Dil~~l~  374 (376)
                       ++|+++|+||++|++.++.
T Consensus       341 -~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  341 -EDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             -CCCcEEEEeeHHHHHHHHH
Confidence             5899999999999999985

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.80  E-value=4.4e-19  Score=154.27  Aligned_cols=121  Identities=18%  Similarity=0.379  Sum_probs=112.1

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~  313 (376)
                      .+++++|.++++++.+++|+.+|.++|.++++++.||+|+ ++++|++|.+|+..++.++.+      +..|++      
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~------  238 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD------  238 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence            3578899999999999999999999999999999999985 599999999999999887754      367887      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                             +|.++++++..++.+.+|++.|..+++.||.|+| .+|+++|+||++|||+.+++
T Consensus       239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhc
Confidence                   8899999999999999999999999999999999 47999999999999999875

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.71  E-value=1.9e-16  Score=140.27  Aligned_cols=173  Identities=17%  Similarity=0.268  Sum_probs=131.3

Q ss_pred             ceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhHHH-HHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHH
Q 017163           93 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  171 (376)
Q Consensus        93 ~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~  171 (376)
                      +-+|+ +..|+-..+..+.+.. .++.++++.+--+. ++...+..++..    ..++|+++++++.+++++.+|.++|.
T Consensus       199 ~rvgf-s~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~Lt----cadIMSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         199 QRVGF-SSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELT----CADIMSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             hccCC-CHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhcccc----HHHhcCccceecCCcCChHHHHHHHH
Confidence            44564 7889999998876532 34566666543222 222222222222    34589999999999999999999999


Q ss_pred             hCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCC
Q 017163          172 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA  251 (376)
Q Consensus       172 ~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~  251 (376)
                      +|+++.+||+|+   ..   +++|++|++|+++..    +.      ...+.++.+    ..++++.+|+.++.|+.+++
T Consensus       273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a----~~------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt  332 (382)
T COG3448         273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHA----RP------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT  332 (382)
T ss_pred             HcCccccccccc---cc---ceeeeeeHHHHhhcc----Cc------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence            999999999975   44   899999999998722    11      011222222    23578899999999999999


Q ss_pred             CHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          252 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       252 ~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      +..+.+-++.+.+.+++||+|++|+++||+|++|++..+.
T Consensus       333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            9999999999999999999999999999999999988553

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.71  E-value=3e-16  Score=126.54  Aligned_cols=119  Identities=39%  Similarity=0.661  Sum_probs=97.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+.....++.....   ..++.+++....       .|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence            57789999999999999999999999999999999999999999986644322111   133444322111       44


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence            567889999999999999999999999999994 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.71  E-value=9.6e-17  Score=139.77  Aligned_cols=120  Identities=19%  Similarity=0.328  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163          144 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  223 (376)
Q Consensus       144 ~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~  223 (376)
                      ..++.+|+++++++.+++|+.+|+.++.+++++..||+|+    +   +++|++|.+||.+.+...              
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g--------------  230 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG--------------  230 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC--------------
Confidence            3446689999999999999999999999999999999975    3   799999999999876532              


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                             ....+|.++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..+.
T Consensus       231 -------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 -------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             -------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                   2334677789999999999999999999999999999999999999999999999998553

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.68  E-value=1.3e-16  Score=141.40  Aligned_cols=127  Identities=19%  Similarity=0.391  Sum_probs=108.7

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      ...++|++++++++.++++.+|.++|.+|+++.+||+|++.+++|+++++|+.+-..-+.+.++.           ..+ 
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr-----------~~~-  313 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR-----------FLR-  313 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh-----------ccC-
Confidence            45788999999999999999999999999999999999999999999999998855433333221           111 


Q ss_pred             CCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                       ..+. ++|+.++.|+.++++..+.+-++.+.+.|.+||+| +.|+++||||.+|++.+++.
T Consensus       314 -~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         314 -PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             -CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHHH
Confidence             1122 39999999999999999999999999999999999 57999999999999998864

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=1.7e-15  Score=117.84  Aligned_cols=95  Identities=15%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      .++++.+++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            46789999999999999999999999999974 89999999999976221                              


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEeHHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF  372 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~~~GvIs~~Dil~~  372 (376)
                          +.++.+++++.+|++.|.+++++++||+|+ + |+++|+||.+|++++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF   98 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence                458999999999999999999999999994 5 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.64  E-value=3.1e-15  Score=118.99  Aligned_cols=109  Identities=11%  Similarity=0.252  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.....+ .+     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence            35688999999999999999999999999999999999999999874211 11     1234555             56


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||.+|+++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~  110 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR  110 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence            667889999999999999999999999999994 699999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.64  E-value=6.6e-15  Score=117.57  Aligned_cols=112  Identities=16%  Similarity=0.286  Sum_probs=94.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      .+.++.+++++.+|++.|.+++...+||+|++|+++|+++..|+.+........   ..+.++.+             +|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~---~~~~~v~~-------------~~   65 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGP---GCTAPVEN-------------VM   65 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCC---cccCCHHH-------------Hh
Confidence            367889999999999999999999999999999999999999998755321111   11355666             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus        66 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          66 TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK  113 (114)
T ss_pred             cCCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence            66788999999999999999999999999999 4689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.63  E-value=3e-15  Score=121.09  Aligned_cols=119  Identities=18%  Similarity=0.391  Sum_probs=100.4

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      +..+|.++++.+++++++.+|+++|.++++|.+||+++ |+++|-||..++.+...++.. .+  .+..+.+        
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e-~i--~~~~vr~--------  134 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME-SI--RSLRVRE--------  134 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc-ch--hhhhHHH--------
Confidence            45569999999999999999999999999999999975 999999999999997755532 12  2466776        


Q ss_pred             CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                           +|+.++++++++.++..+-..+..++  .+.|++  +|+++||||..||++.+.+
T Consensus       135 -----vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         135 -----VMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             -----HhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence                 89999999999999998777776664  466776  4999999999999999865

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=1.5e-14  Score=116.17  Aligned_cols=112  Identities=21%  Similarity=0.302  Sum_probs=93.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|..++++++||+|++|+++|+++..|+.+....+..    +.+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~----~~~~~~~~-------------~~   64 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGAD----LQKVPVGV-------------IM   64 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCC----ccCCCHHH-------------Hh
Confidence            56789999999999999999999999999988999999999999886542211    11345665             44


Q ss_pred             CC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC--CeEEEEEeHHHHHH
Q 017163          323 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~--~~~~GvIs~~Dil~  371 (376)
                      ..  ++.++.+++++.+++++|.+++++++||||+++  |+++|+||.+|+++
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            42  688999999999999999999999999999532  69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.61  E-value=8e-15  Score=139.19  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=104.4

Q ss_pred             cccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          234 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       234 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      .+++++|.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+.    .+.+.++.+    
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~----  273 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD----  273 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence            467888987  8999999999999999999999988899999999999999999987554321    122356776    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                               +|..++.++.+++++.+|++.|.+++++++||+|+  |+++|+||.+|++++
T Consensus       274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence                     78888999999999999999999999999999984  899999999999975

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.61  E-value=5.7e-15  Score=120.03  Aligned_cols=113  Identities=14%  Similarity=0.226  Sum_probs=95.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|++....++....    +.++.+             +|
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~----~~~v~~-------------im   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP----SDPVSK-------------AL   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC----CCcHHH-------------Hh
Confidence            5778999999999999999999999999999999999999999987554332211    357777             77


Q ss_pred             CCcceEecCCCCHHHHHHHH---------hcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERL---------ANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m---------~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                      ..++.++.+++++.++.+.|         ...+.+++||+| ++|+++|+||..|+++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence            78899999999999999954         344678889998 579999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=2.8e-14  Score=113.80  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=94.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+|++ |+++|+++.+|+++.+..+....   .+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------~   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP---DRVNVYE-------------I   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC---CccCHHH-------------H
Confidence            46789999999999999999999999999987 99999999999988543321111   1245666             5


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      |..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA  114 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence            666789999999999999999999999999999 4 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.60  E-value=3e-14  Score=113.77  Aligned_cols=112  Identities=20%  Similarity=0.346  Sum_probs=94.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....++...    ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~-------------~~   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG----EPSAVDE-------------VA   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc----ccccHHH-------------hc
Confidence            466889999999999999999999999999999999999999998865432211    1234555             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC--CeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~--~~~~GvIs~~Dil~~  372 (376)
                      ..++.+|.+++++.++++.|.+++.+++||+|+ .  |+++|+||.+|++++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence            667899999999999999999999999999994 5  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.59  E-value=3.2e-14  Score=115.07  Aligned_cols=117  Identities=21%  Similarity=0.370  Sum_probs=95.7

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc------ccccccHHHHHhcCCCC
Q 017163          242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA  315 (376)
Q Consensus       242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~------~~~~~~v~~~l~~~~~~  315 (376)
                      +++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++...........      .....++.+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--------   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD--------   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence            367889999999999999999999999999988999999999999875543221100      001123333        


Q ss_pred             CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                           +|..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|++++
T Consensus        74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~  124 (124)
T cd04600          74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence                 6667899999999999999999999999999999 47999999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.59  E-value=9.1e-15  Score=140.54  Aligned_cols=190  Identities=18%  Similarity=0.230  Sum_probs=135.6

Q ss_pred             CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcc-ccccccc-------ccccc
Q 017163          159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP-ILQQPVS-------SIQLG  230 (376)
Q Consensus       159 ~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~-~~~~~i~-------~l~i~  230 (376)
                      ....+.....++.+++.++.-+...   +    .++..+..+.+.....++ .....+.. .+.+.++       +-...
T Consensus        73 ~~gdlFg~~~l~~~~~~~~~~~aee---d----sl~y~lp~s~F~ql~~~n-~~f~~ff~~~~akR~~~~~~~~~eq~~~  144 (610)
T COG2905          73 AAGDLFGFSSLFTELNKQRYMAAEE---D----SLCYLLPKSVFMQLMEEN-PEFADFFLRSLAKRLRDIADRLAEQGES  144 (610)
T ss_pred             ccCccccchhhcccCCCcceeEeec---c----ceEEecCHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            3344455555556666666655532   2    477777666554443322 11110000 0111111       10111


Q ss_pred             -ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 017163          231 -TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  309 (376)
Q Consensus       231 -~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  309 (376)
                       ....++++++..+++++++.+++.+|.+.|.+.|++++.++++++...||+|++|+...+-......    ..+|++  
T Consensus       145 e~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~----~~~V~e--  218 (610)
T COG2905         145 EFILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK----TQKVSE--  218 (610)
T ss_pred             hHHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc----ccchhh--
Confidence             1224678889999999999999999999999999999999999999999999999998554222111    356666  


Q ss_pred             hcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          310 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       310 ~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                 +|+.|++++..++.+.+|+-+|..++++||||.++  |+++|+||.+||++.+-.
T Consensus       219 -----------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         219 -----------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             -----------hhccCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCC
Confidence                       89999999999999999999999999999999985  999999999999998753

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.58  E-value=2.1e-14  Score=136.02  Aligned_cols=120  Identities=13%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             cccccccCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          234 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       234 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      .+|+++|.++  +.++++++++.+|++.|.+++.+.+||+|++|+++|+++.+|+.+....+...     +.++.+    
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~----  267 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE----  267 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence            4678889988  99999999999999999999999999999999999999999998755432211     245666    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                               +|.+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||..|++++
T Consensus       268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence                     7778899999999999999999999999999999 46899999999999975

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=7.9e-14  Score=110.58  Aligned_cols=112  Identities=21%  Similarity=0.401  Sum_probs=94.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.+++++.++.++++.|.+++.+.+||+|++++++|+++..|+..........   ..+.++.+             +|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~---~~~~~~~~-------------~~   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGAS---ALDTPVSE-------------IM   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCC---ccccCHHH-------------hc
Confidence            467889999999999999999999999999889999999999998755432211   01245666             56


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..|++++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence            66788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.1e-14  Score=115.76  Aligned_cols=121  Identities=21%  Similarity=0.311  Sum_probs=93.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHH---HHHhcCCCCCCCc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL  319 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~---~~l~~~~~~~~~~  319 (376)
                      .+.++++++++.+|++.|.+++++++||+|++|+++|+++..|++....++....    ..+..   +......   ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~   74 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFT---DSD   74 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcc---ccc
Confidence            4678999999999999999999999999999999999999999988654322110    00100   0000000   001


Q ss_pred             ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..|..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence            14567899999999999999999999999999999 4699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.7e-14  Score=109.26  Aligned_cols=95  Identities=16%  Similarity=0.368  Sum_probs=85.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            567899999999999999999999999999999999999999997621                                


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                        .+.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+|++++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence              155899999999999999999999999999 46899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=7e-14  Score=113.14  Aligned_cols=119  Identities=20%  Similarity=0.291  Sum_probs=91.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +......+..       ..+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence            56789999999999999999999999999987 99999999999988553321110000 0000000000       014


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  370 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil  370 (376)
                      |..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+|+-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence            6678899999999999999999999999999994 68999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.55  E-value=1.8e-13  Score=108.19  Aligned_cols=108  Identities=20%  Similarity=0.430  Sum_probs=93.3

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      +++.++.++.++.++++.|.+++.+.+||+|++|+++|+++..|+++....+.        .++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence            35778999999999999999999999999998999999999999987554221        23444             5


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      |..++.++..++++.++++.|.+++.+.+||++ ++|+++|+||..|+++
T Consensus        61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~  109 (110)
T cd04605          61 MTRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK  109 (110)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence            556788999999999999999999999999999 4699999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.1e-13  Score=111.60  Aligned_cols=116  Identities=19%  Similarity=0.322  Sum_probs=95.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-----ccccccHHHHHhcCCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP  317 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-----~~~~~~v~~~l~~~~~~~~  317 (376)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+............     .....++.+          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence            46789999999999999999999999999988999999999999886543221100     001234454          


Q ss_pred             CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                         +|..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|++++
T Consensus        72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~  122 (122)
T cd04803          72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL  122 (122)
T ss_pred             ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence               55667889999999999999999999999999994 6899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=5.9e-14  Score=109.16  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=84.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      .++++++++++.+|++.|.+++++.+||+|+  ++|   +++|++|..|+.+.+.                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~-------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR-------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence            4788999999999999999999999999964  236   8999999999976220                         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~  288 (376)
                                 +.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+..
T Consensus        52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                       5689999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.55  E-value=1.5e-13  Score=109.32  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=93.0

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 017163          244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  323 (376)
Q Consensus       244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~  323 (376)
                      ..++.+++++.+|++.|.+.+.+.++|+|++|+++|+++.+|+.....++...     +.++.+             +|.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~~   65 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VMN   65 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hhc
Confidence            56789999999999999999999999999999999999999998755432211     235666             555


Q ss_pred             CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          324 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       324 ~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+|++.
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  112 (113)
T cd04607          66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence            6788999999999999999999999999999 4699999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=110.25  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=92.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-ccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      .+.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.......... .+.+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~   68 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V   68 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence            46789999999999999999999999999989999999999999886543221110 000234555             5


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      |..++.++.+++++.+|++.|.+.+  .+||+| ++|+++|+||..|++++
T Consensus        69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA  116 (116)
T ss_pred             hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence            6667889999999999999998865  599999 47999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.8e-13  Score=108.51  Aligned_cols=110  Identities=18%  Similarity=0.355  Sum_probs=94.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+..+...     +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence            466889999999999999999999999999889999999999998865543211     245555             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|.+++...+||+| ++|++.|++|.+|+++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence            66788999999999999999999999999999 4699999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.55  E-value=7.3e-14  Score=111.33  Aligned_cols=109  Identities=22%  Similarity=0.340  Sum_probs=90.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~-i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++..|+.....+...      +.++.+             +
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~-------------~   62 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQ-------------V   62 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhh-------------h
Confidence            4678899999999999997775 8999999988999999999999886542211      245555             3


Q ss_pred             CC--CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          322 NG--QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       322 m~--~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      |.  .++.++.+++++.+|++.|.+++.+++||+|+ +|+++|++|..||++
T Consensus        63 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          63 MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence            32  23668999999999999999999999999994 689999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=8.2e-14  Score=110.83  Aligned_cols=113  Identities=20%  Similarity=0.292  Sum_probs=94.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|.+.|.+.+.+.+||+|++|+++|+++..|+.+.+....+..  ..+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~-------------~~   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRD-------------IM   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHH-------------Hh
Confidence            4678899999999999999999999999999999999999999987554332211  01245565             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence            56788999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.4e-13  Score=113.62  Aligned_cols=115  Identities=15%  Similarity=0.216  Sum_probs=93.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc-------------------cccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-------------------LDEM  303 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-------------------~~~~  303 (376)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..|++............                   ..+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            466889999999999999999999999999999999999999998865422111000                   0012


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       304 ~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ++.+             +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+|++++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~  135 (135)
T cd04621          82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE  135 (135)
T ss_pred             cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence            3333             6777888999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.4e-13  Score=112.20  Aligned_cols=117  Identities=23%  Similarity=0.379  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-cccc--------cccccHHHHHhcCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH--------LDEMNIHQALQLGQ  313 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~~--------~~~~~v~~~l~~~~  313 (376)
                      ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|++|..|+..++....+ ....        ..+.++.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence            46688999999999999999999999999999999999999999875432111 0000        00122333      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeC-CCCeEEEEEeHHHHHHH
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF  372 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~-~~~~~~GvIs~~Dil~~  372 (376)
                             +|..++.++.+++++.++++.|.+++.+.+||++. ++|+++|+||.+|++++
T Consensus        76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence                   67778999999999999999999999999999852 46899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.7e-13  Score=108.55  Aligned_cols=109  Identities=17%  Similarity=0.332  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+..+......     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence            46788999999999999999999999999989999999999999875432211     1245665             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.+|++.|.+++.+++||+| + |+++|+||..|++.
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            56788999999999999999999999999999 4 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.4e-13  Score=110.84  Aligned_cols=118  Identities=22%  Similarity=0.291  Sum_probs=92.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.+++++.+|++.|.+++.+++||+++   +|   +++|+++..|++.++..+...      ....++...-    
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~----   65 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL----   65 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH----
Confidence            6789999999999999999999999999975   56   899999999999865322110      0011111100    


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus        66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence              011234567889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.54  E-value=3e-14  Score=144.39  Aligned_cols=283  Identities=13%  Similarity=0.157  Sum_probs=178.7

Q ss_pred             CCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhH
Q 017163           48 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  127 (376)
Q Consensus        48 ~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i  127 (376)
                      .++.|++-  .++++++.++++.+|++.|.++++..+||.|++ ++++|++|..|+...+...... ..+.  .+ ..++
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~-~~~~--~~-~~t~  140 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP-EILS--KS-PTSL  140 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch-hhhh--hc-CCCH
Confidence            56777773  579999999999999999999999999999976 5699999999999866643210 0000  00 0011


Q ss_pred             HHHHHHHHhhhcccc--c------C------------CCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCC-
Q 017163          128 SAWKVGKLQLNLKRQ--M------D------------GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-  186 (376)
Q Consensus       128 ~~~~~~~~~~~~~~~--~------~------------~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~-  186 (376)
                      ..+.+   .++....  .      .            ..+......++.+...   .+....+.+.+++.++|+...+- 
T Consensus       141 ~~i~~---~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~  214 (546)
T PRK14869        141 ENIIR---TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVS  214 (546)
T ss_pred             HHHHH---hcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCC
Confidence            11111   0000000  0      0            0001122346666555   34444678889999999865321 


Q ss_pred             --------CCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccC-CCceEecCCCCHHHHH
Q 017163          187 --------AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSAL  257 (376)
Q Consensus       187 --------~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~  257 (376)
                              ..   .+.++.|..|.......-.         ..            ..+.++|+ +++.++++++++.++.
T Consensus       215 ~~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~------------~~V~~iM~~~~~~~~~~~~~~~~~~  270 (546)
T PRK14869        215 EDVLELAKEN---GVTVISTPYDTFTTARLIN---------QS------------IPVSYIMTTEDLVTFSKDDYLEDVK  270 (546)
T ss_pred             HHHHHHHHhC---CCeEEEecccHHHHHHHhh---------cC------------CCHHHhccCCCcEEECCCCcHHHHH
Confidence                    11   3778888888776443211         11            23556698 8899999999999999


Q ss_pred             HHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH---HhcCC----CCCCCc-ccCCCcceEe
Q 017163          258 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA---LQLGQ----DANPSL-GFNGQRCQMC  329 (376)
Q Consensus       258 ~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~---l~~~~----~~~~~~-~im~~~~~~~  329 (376)
                      +.|.+++++.+||+|++|+++|++|++|++........-   ++.....+.   +....    -+..+. +++...++.+
T Consensus       271 ~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL---VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~  347 (546)
T PRK14869        271 EVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL---VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFF  347 (546)
T ss_pred             HHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE---EcCccccccccchhhceEEEEecCCccCCCCCCCCcEE
Confidence            999999999999999999999999999999854321100   000000010   00000    000011 2455554444


Q ss_pred             ---cCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          330 ---LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       330 ---~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                         ....+..-+.+.|.+.++...|++..  ..+.||+|-++.|++
T Consensus       348 ~~~~~gst~tiv~~~~~~~~i~~~~~ia~--~ll~gIlsDT~~f~~  391 (546)
T PRK14869        348 RNEPVGSTSTIVARMYRENGIEPSPEIAG--LLLAAILSDTLLFKS  391 (546)
T ss_pred             EeeeeeeHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCccC
Confidence               44677778899999999988888763  568888888777653

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.54  E-value=1.6e-13  Score=107.71  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=90.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.....           .++.+             +|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence            4668899999999999999999999999998999999999999986321           13444             45


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ...+.++.+++++.++++.|.+++...+||+| ++|+++|+||..|+++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence            55678899999999999999999999999999 4689999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=2e-13  Score=108.46  Aligned_cols=111  Identities=20%  Similarity=0.347  Sum_probs=93.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+......+..    +.+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~   64 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VM   64 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hc
Confidence            35678999999999999999999999999988999999999999874332211    11245555             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|.+++.+++||+| ++|+++|++|..|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          65 NSPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.4e-13  Score=111.49  Aligned_cols=116  Identities=17%  Similarity=0.289  Sum_probs=94.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccc-c------ccccccHHHHHhcCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD  314 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~-~------~~~~~~v~~~l~~~~~  314 (376)
                      ++.++.++.++.+|+++|.+.+.+.+||+|++ |+++|+++..|+.....++.... .      ...+.++.+       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS-------   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence            46788999999999999999999999999987 99999999999988664322110 0      000123343       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                            +|..++.++.+++++.++++.|.+.+.+.++|+| ++|+++|+||..||+++
T Consensus        75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~  125 (125)
T cd04631          75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA  125 (125)
T ss_pred             ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence                  5556799999999999999999999999999999 46899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.6e-13  Score=108.63  Aligned_cols=109  Identities=21%  Similarity=0.376  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+..      +.++.+             +|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence            45678999999999999998899999999988999999999999886543221      234555             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|.+++.+++||+| +.|+++|++|..|+..
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~  110 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGE  110 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.2e-13  Score=111.25  Aligned_cols=116  Identities=16%  Similarity=0.294  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc----ccccccHHHHHhcCCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI----HLDEMNIHQALQLGQDANP  317 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~----~~~~~~v~~~l~~~~~~~~  317 (376)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++........ ...    .....++.+          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence            56789999999999999999999999999989999999999999874211100 000    001233443          


Q ss_pred             CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                         +|..++.++..++++.++++.|.+++.+++||+|+ +|+++|++|..|++++
T Consensus        72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~  122 (122)
T cd04635          72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA  122 (122)
T ss_pred             ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence               56667899999999999999999999999999994 6999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.53  E-value=2.4e-13  Score=107.99  Aligned_cols=111  Identities=20%  Similarity=0.346  Sum_probs=95.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....++...    ...++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~----~~~~v~~-------------~~   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY----DLVVASD-------------IM   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc----ccEEHHH-------------hc
Confidence            567899999999999999999999999999889999999999998765432211    1246666             56


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCC-CCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~-~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|...+.+++||+| + .|+++|++|..|+++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhc
Confidence            67789999999999999999999999999998 4 589999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.53  E-value=7.5e-14  Score=137.67  Aligned_cols=172  Identities=13%  Similarity=0.161  Sum_probs=134.0

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163          141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  215 (376)
Q Consensus       141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~-----~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~  215 (376)
                      |..+.+|++|..+++++++++++.+|++.|.+     ++...++|+|+   ++   +++|+++.+|++..      .   
T Consensus       128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~---  192 (449)
T TIGR00400       128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K---  192 (449)
T ss_pred             CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence            77888899999999999999999999999975     45678898865   46   89999999998641      0   


Q ss_pred             CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc
Q 017163          216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  295 (376)
Q Consensus       216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~  295 (376)
                          ...            .++++|.+++.++++++++.+|++.|.+++...+||||++|+++|++|.+|++..+.+.. 
T Consensus       193 ----~~~------------~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-  255 (449)
T TIGR00400       193 ----PEE------------ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-  255 (449)
T ss_pred             ----CCC------------cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence                011            245558888999999999999999999999999999999999999999999998765321 


Q ss_pred             cccccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          296 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       296 ~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                               .++             +|.....++.+++++.+++.+|.+++...|+|.-     +.|++| ..++..
T Consensus       256 ---------~ed-------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~  304 (449)
T TIGR00400       256 ---------TED-------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN  304 (449)
T ss_pred             ---------HHH-------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence                     133             2222344455678889999999999988877652     455555 544443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2e-13  Score=111.97  Aligned_cols=115  Identities=17%  Similarity=0.310  Sum_probs=93.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc----------------cccccHH
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH----------------LDEMNIH  306 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~----------------~~~~~v~  306 (376)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+.............                +...++.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            467899999999999999999999999999999999999999998865432110000                0000222


Q ss_pred             HHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       307 ~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      +             +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|++|.+|++++
T Consensus        82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            2             5667789999999999999999999999999999 5 999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.53  E-value=1.7e-13  Score=108.20  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=92.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+....          .+.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~-------------~~   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEK-------------VM   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHH-------------Hh
Confidence            577899999999999999999999999999999999999999997521          0245666             45


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|.+++.+.+||+| ++|+++|++|..|+++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4799999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.53  E-value=1.4e-13  Score=135.52  Aligned_cols=115  Identities=15%  Similarity=0.225  Sum_probs=101.4

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      +.++|.++++++.+++++.+|+++|.+++++++||+|++++++|++|.+|+....       .   ..++.+        
T Consensus        91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------~---~~~V~d--------  152 (479)
T PRK07807         91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------R---FTQVRD--------  152 (479)
T ss_pred             cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-------c---CCCHHH--------
Confidence            4456888999999999999999999999999999999999999999999985320       0   235666        


Q ss_pred             CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                           +|..++.++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++..
T Consensus       153 -----iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        153 -----VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             -----hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence                 7778899999999999999999999999999999 4799999999999998754

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.52  E-value=1.6e-13  Score=112.96  Aligned_cols=115  Identities=23%  Similarity=0.386  Sum_probs=93.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc------ccc------------ccccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QIH------------LDEMN  304 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~------~~~------------~~~~~  304 (376)
                      ++.++.+++++.++++.|.+++..++||+|++|+++|+++..|+......+...      ...            ....+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            577899999999999999999999999999889999999999998754322100      000            00122


Q ss_pred             HHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          305 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       305 v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      +.+             +|..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++++
T Consensus        83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~~  135 (135)
T cd04586          83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLRA  135 (135)
T ss_pred             HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhcC
Confidence            222             5667789999999999999999999999999999 3 999999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.51  E-value=3.1e-13  Score=107.28  Aligned_cols=111  Identities=17%  Similarity=0.306  Sum_probs=92.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|++..........   ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence            4678899999999999999999999999987 99999999999985332221111   0145565             66


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|..++.+++||+| ++|+++|+||..|++.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence            67788999999999999999999999999999 4699999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=2.3e-13  Score=110.73  Aligned_cols=112  Identities=21%  Similarity=0.387  Sum_probs=88.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH-----HhcccccccccccccHHHHHhcCCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL-----AKDKAYAQIHLDEMNIHQALQLGQDANP  317 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~-----~~~~~~~~~~~~~~~v~~~l~~~~~~~~  317 (376)
                      ++.++..++++.+|++.|.+++...+||+|++|+++|+++..|+...     ..++ +  ..+.+.++.+          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~~~~~~~v~~----------   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG-G--ISRSELTVAD----------   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc-C--CCchheEHHH----------
Confidence            46789999999999999999999999999988999999999999852     1111 0  0111345666          


Q ss_pred             CcccCCCcceEe------cCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEeHHHHHH
Q 017163          318 SLGFNGQRCQMC------LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR  371 (376)
Q Consensus       318 ~~~im~~~~~~~------~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~~~GvIs~~Dil~  371 (376)
                         +|..+...+      .+++++.++++.|.+++.+++||+|+ + |+++|+||++|+++
T Consensus        69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~  125 (126)
T cd04640          69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR  125 (126)
T ss_pred             ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence               554444333      36899999999999999999999994 5 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.51  E-value=5e-13  Score=105.81  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=92.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.+++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+..........    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence            5678999999999999999999999999987 9999999999998744322111    0245565             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.51  E-value=5.2e-13  Score=105.79  Aligned_cols=110  Identities=17%  Similarity=0.270  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      +++++++++++.++++.|.+.+.+.++|+|+ |+++|+++..|+......+...    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence            4568899999999999999999999999998 8999999999998755432211    1345666             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++.+++++.++++.|.+++.+++||+|+  |+++|+||..|+++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence            567889999999999999999999999999994  899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=3.3e-13  Score=109.15  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=93.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++++++||+|+  .++   +++|+++..|+++++................++        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~--------   68 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL--------   68 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence            5778899999999999999999999999975  226   799999999999876543221100000000000        


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        ...+.|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+..
T Consensus        69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence              112346678899999999999999999999999999998999999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.51  E-value=2.8e-13  Score=107.58  Aligned_cols=109  Identities=15%  Similarity=0.195  Sum_probs=90.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+.+...   ..      ....          
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~---~~------~~~~----------   56 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGP---ND------YETL----------   56 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhcc---cc------cccc----------
Confidence            3578899999999999999999999999975   56   8999999999976211   00      0011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        57 --~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          57 --KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence              234457778889999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.51  E-value=5.6e-13  Score=105.51  Aligned_cols=108  Identities=16%  Similarity=0.359  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++.+++++.+|.+.|.+.+.+++||+|++ |+++|+++..|+......+..      ..++..             +
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence            46789999999999999999999999999988 999999999999986643221      123333             3


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      + .++.++..++++.++++.|.+++.+++||+| ++|+++|+||.+|+++
T Consensus        63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE  110 (111)
T ss_pred             h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence            3 3578999999999999999999999999999 4799999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.51  E-value=6.3e-13  Score=105.12  Aligned_cols=107  Identities=23%  Similarity=0.451  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++..+.++.+|.+.|.+.+.+++||+|+ |+++|+++..|+......+.      .+.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~~   62 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------YM   62 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------Hh
Confidence            6778999999999999999999999999998 99999999999987653221      1356666             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|.+++.+++||+|+  |+++|+||..|+++
T Consensus        63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvvt~~di~~  109 (110)
T cd04595          63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVED--GRLVGIVTRTDLLR  109 (110)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC--CEEEEEEEhHHhhc
Confidence            567889999999999999999999999999993  89999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.50  E-value=1.3e-13  Score=111.75  Aligned_cols=118  Identities=23%  Similarity=0.427  Sum_probs=99.9

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      +..+|.++++++.|++++.+|+++|.++|++.+||+++    +   +++|-+|..+|.+.+....           ..++
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~  128 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIR  128 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchh
Confidence            34589999999999999999999999999999999965    4   8999999999999765432           1122


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      +       -++.++|..++.++++++++....+++..+  .++.|+ ++|+++|+||+.|+.++..
T Consensus       129 ~-------~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         129 S-------LRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             h-------hhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence            2       257788999999999999999888888765  468888 7999999999999999764

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.50  E-value=6.5e-13  Score=104.94  Aligned_cols=108  Identities=24%  Similarity=0.373  Sum_probs=92.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++....+..      ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence            5678899999999999999999999999998 999999999999886543211      134555             45


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|.+.+.+.+||+| +.|+++|+||..|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence            56788999999999999999999999999999 4689999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.50  E-value=4.7e-13  Score=106.32  Aligned_cols=111  Identities=15%  Similarity=0.301  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|+++..++..+......    ....++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence            46678999999999999998889999999988999999999999987653221    11235666             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|..++.+.+||+|+ +|+++|+||..||++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            567889999999999999999999999999994 699999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.50  E-value=1.1e-12  Score=130.38  Aligned_cols=220  Identities=18%  Similarity=0.241  Sum_probs=148.6

Q ss_pred             eecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCC
Q 017163           84 VPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY  160 (376)
Q Consensus        84 ~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~  160 (376)
                      .|++.+.    .+-+|..++...+......+   .+++.++...    .++..+..          +..|..+++++.++
T Consensus        42 ~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~----~I~~vk~~----------~dim~~~~v~i~~~  103 (486)
T PRK05567         42 IPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE----EVRKVKRS----------ESGVVTDPVTVTPD  103 (486)
T ss_pred             cCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH----HHHHhhhh----------hhcccCCCeEeCCC
Confidence            7888653    24458888887776554322   2222222111    11111111          23677899999999


Q ss_pred             CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccccccc
Q 017163          161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN  240 (376)
Q Consensus       161 ~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m  240 (376)
                      +++.+|+++|.+++++++||+|+   ++   +++|+++.+|+....     .       ...            .+.++|
T Consensus       104 ~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~------------~V~dim  153 (486)
T PRK05567        104 TTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQ------------PVSEVM  153 (486)
T ss_pred             CCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCC------------cHHHHc
Confidence            99999999999999999999975   56   899999999985410     0       111            234457


Q ss_pred             C-CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163          241 G-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  319 (376)
Q Consensus       241 ~-~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  319 (376)
                      . ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|+++....   ...     + .+       .... 
T Consensus       154 ~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~---p~a-----~-~d-------~~g~-  216 (486)
T PRK05567        154 TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF---PNA-----C-KD-------EQGR-  216 (486)
T ss_pred             CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC---CCc-----c-cc-------cCCC-
Confidence            6 688999999999999999999999999999999999999999999985421   100     0 00       0000 


Q ss_pred             ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                       ++-.......+  .-.+.++.|.+.+++. .++|..+|+..|+++..+.++.
T Consensus       217 -l~V~aai~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        217 -LRVGAAVGVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             -EEEEeecccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence             00001112222  2278888999999995 4777445888888877776664

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5.1e-13  Score=106.53  Aligned_cols=110  Identities=18%  Similarity=0.314  Sum_probs=89.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~-i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++.++.++.++++.|.+++ ...++|+| +|+++|+++..|++....++..    ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence            4567899999999999998888 66777776 6999999999999875543211    11245665             5


Q ss_pred             CCCcceEecCC--CCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          322 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       322 m~~~~~~~~~~--~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      |..++.++.++  +++.+|++.|.+++.+++||+|+ +|+++|+||..|+++
T Consensus        64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~  114 (115)
T cd04620          64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ  114 (115)
T ss_pred             cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence            55677888877  78999999999999999999994 699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.50  E-value=7.1e-13  Score=104.41  Aligned_cols=106  Identities=19%  Similarity=0.306  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+..++||+|++|+++|+++..|+......         ..++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence            46788999999999999999999999999988999999999999874321         124444             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ...+.++.+++++.++++.|.+++.+++||+| ++|+++|++|..|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence            56788999999999999999999999999999 4689999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.50  E-value=5.5e-13  Score=105.38  Aligned_cols=110  Identities=24%  Similarity=0.356  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+......+...     ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence            5678999999999999999999999999998 9999999999998755432111     123444             56


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++..++++.++++.|.+++.+.+||+|+ +|+++|+||..|++++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~  111 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLRA  111 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhhC
Confidence            678899999999999999999999999999994 6999999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.50  E-value=3.7e-13  Score=125.05  Aligned_cols=121  Identities=12%  Similarity=0.353  Sum_probs=101.5

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+  ++.++..++++.++++.+.+++.+++||++++ ++++|+++.+|++.....+..      ..++.+    
T Consensus        68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~----  137 (292)
T PRK15094         68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK----  137 (292)
T ss_pred             EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence            45667886  69999999999999999999999999999876 799999999999864432111      123454    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  376 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~  376 (376)
                               +|. ++.++.+++++.++++.|.+++.+.++|+| +.|.++|+||+.||+..++|.
T Consensus       138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivGe  191 (292)
T PRK15094        138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVGE  191 (292)
T ss_pred             ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhCC
Confidence                     443 456899999999999999999999999999 578999999999999999863

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4.6e-13  Score=106.84  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=92.2

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccc
Q 017163          154 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  233 (376)
Q Consensus       154 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~  233 (376)
                      +.++.+++++.+|++.|.+++...+||+|+   +|   +++|+++..++++.+......      ...            
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------   58 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------   58 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence            567899999999999999999999999975   56   899999999998755321000      011            


Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ..+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|+++
T Consensus        59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            2344557778999999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4e-13  Score=108.06  Aligned_cols=114  Identities=16%  Similarity=0.346  Sum_probs=92.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~------~~~~~~~v~~~l~~~~~~~  316 (376)
                      ++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+...........      ..+...++.+         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD---------   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence            5678899999999999999999999999986 99999999999987544211100      0001223333         


Q ss_pred             CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                          +|..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                5667889999999999999999999999999999 5 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=8.2e-13  Score=104.72  Aligned_cols=111  Identities=15%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      .+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++..|+.+...+...   .+.+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~~   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRA-------------IM   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHH-------------Hh
Confidence            466889999999999999888888887775 5999999999999875542211   111245666             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++.+++++.+|++.|..++.+++||+| + |+++|+||.+|++++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhcC
Confidence            56788999999999999999999999999999 3 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.49  E-value=1.5e-12  Score=124.68  Aligned_cols=195  Identities=17%  Similarity=0.186  Sum_probs=148.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhHHHHHHHHHhhhc
Q 017163           60 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  139 (376)
Q Consensus        60 vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  139 (376)
                      .+.+.+..++.+|...|.++++.++||.|.+.+..++++|..-++..+........   ...+-..++..+         
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~---~~~~l~~s~~dl---------  231 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP---LPSLLSKSLSDL---------  231 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc---cHHHhhCCHHHh---------
Confidence            38999999999999999999999999999887899999999999988876654321   222222232221         


Q ss_pred             ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccc
Q 017163          140 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  219 (376)
Q Consensus       140 ~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~  219 (376)
                             +......+..+..++++.+|++.|.+++++.+||++.   .|   ..+|.++..|+........      ...
T Consensus       232 -------~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~------~~~  292 (381)
T KOG1764|consen  232 -------GIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGT------YNN  292 (381)
T ss_pred             -------CcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCc------cCc
Confidence                   0112447889999999999999999999999999976   55   6799999999977554321      111


Q ss_pred             cccc-cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          220 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       220 ~~~~-i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      +... +++.     . .....-...++++.++.++.+++..|..++++++.|||++|.++|++|.+|++..+.
T Consensus       293 ~~~~~l~~~-----~-~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  293 LDLSCLSEA-----L-SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             cchhHHHHH-----h-hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence            2222 2211     0 001112345899999999999999999999999999999999999999999999765

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.49  E-value=3.6e-13  Score=137.22  Aligned_cols=124  Identities=18%  Similarity=0.232  Sum_probs=105.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|++++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+...+....    .+.++.+       
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~----~~~~v~d-------  516 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDT----TDKTAAD-------  516 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccccc----ccchHHH-------
Confidence            57788999999999999999999999999999999999999999999999998744322110    1234555       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~-~~~~GvIs~~Dil~~l~~  375 (376)
                            +|.+++.++++++++.+|+++|.+++.+++||||+++ ++++|+||..|+++++..
T Consensus       517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence                  6777889999999999999999999999999999532 589999999999998753

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.49  E-value=1.1e-12  Score=133.11  Aligned_cols=195  Identities=18%  Similarity=0.177  Sum_probs=135.9

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc--
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS--  225 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~--  225 (376)
                      ++|.++++++.+++++.+|+++|.+++++.+||+|+   +|   +++|++|..|+.+++........  ......++.  
T Consensus        72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~~--~~~~~~t~~~i  143 (546)
T PRK14869         72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPEI--LSKSPTSLENI  143 (546)
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchhh--hhhcCCCHHHH
Confidence            367889999999999999999999999999999975   57   89999999999987764331100  001111111  


Q ss_pred             --------------------cccccccc-cccccccCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEECCCC--------
Q 017163          226 --------------------SIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDND--------  275 (376)
Q Consensus       226 --------------------~l~i~~~~-~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g--------  275 (376)
                                          .+.+|.-. ..+.+.+.+. ++.+ .+.  .++...+.+.+++++.|+....        
T Consensus       144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~-gdr--~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l  220 (546)
T PRK14869        144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIV-GDR--EDIQLAAIEAGVRLLIITGGAPVSEDVLEL  220 (546)
T ss_pred             HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEE-cCc--HHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence                                11111110 1122234433 4444 332  3445567889999998886432        


Q ss_pred             ----cEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEE
Q 017163          276 ----SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRL  350 (376)
Q Consensus       276 ----~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l  350 (376)
                          .+.++.|..|.......-..      ..++.+             +|. +++.++.+++++.++.+.|.+++.+++
T Consensus       221 a~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  281 (546)
T PRK14869        221 AKENGVTVISTPYDTFTTARLINQ------SIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSY  281 (546)
T ss_pred             HHhCCCeEEEecccHHHHHHHhhc------CCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence                46677777776664432111      245665             788 789999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeHHHHHHHH
Q 017163          351 VIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       351 ~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                      |||| ++|+++|+||..|+++..
T Consensus       282 PVvd-~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        282 PVVD-EDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             EEEc-CCCCEEEEEEHHHhhccc
Confidence            9999 579999999999998753

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.48  E-value=7.3e-13  Score=106.38  Aligned_cols=114  Identities=23%  Similarity=0.340  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc------cccccHHHHHhcCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN  316 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~------~~~~~v~~~l~~~~~~~  316 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.............      ..+.++.+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence            4678899999999999999999999999987 9999999999998855422111000      00122333         


Q ss_pred             CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                          +|..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|+++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~  121 (122)
T cd04585          72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFR  121 (122)
T ss_pred             ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhh
Confidence                6667889999999999999999999999999999 4699999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.48  E-value=1.2e-12  Score=103.40  Aligned_cols=109  Identities=22%  Similarity=0.306  Sum_probs=93.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|+.+....+..     .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence            4668899999999999999999999999986 999999999999886643321     1355666             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            567889999999999999999999999999994 689999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.47  E-value=7.8e-13  Score=106.86  Aligned_cols=122  Identities=19%  Similarity=0.358  Sum_probs=96.2

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      +++.++.+++++.++++.|.+++++++||+++   +|   +++|+++..++++++.......  ....+.       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~--~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRRP--LRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccch--hhhhhh-------ccc
Confidence            46788999999999999999999999999975   46   8999999999987654321100  000000       011


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ....+.++|.+.+.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            122455668888999999999999999999999999999998999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.3e-12  Score=103.61  Aligned_cols=110  Identities=23%  Similarity=0.389  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++. ....+..    ....++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence            5678999999999999999999999999987 99999999999873 3322211    11123555             5


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      |...+.++.+++++.++++.|...+.+++||+|+ +|+++|+||..|+++
T Consensus        64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            6667889999999999999999999999999994 699999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=7e-13  Score=106.48  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++...+||+|.   ++   +++|+++..++++.......       ...           
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~~-------~~~-----------   57 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGAD-------LQK-----------   57 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCCC-------ccC-----------
Confidence            5788999999999999999999999999975   56   79999999999886532110       001           


Q ss_pred             ccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~  288 (376)
                       ..+.++|.+  ++.++.+++++.+++++|.+++++.+||+|++   |+++|++|++|+.+
T Consensus        58 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          58 -VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             -CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence             123344653  68899999999999999999999999999877   79999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2.2e-12  Score=102.20  Aligned_cols=110  Identities=15%  Similarity=0.314  Sum_probs=91.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|++.....+....   .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence            4678899999999999999999999999985 59999999999988543221111   1245565             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|.+++.+.+||+|+  ++++|+||..|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            567889999999999999999999999999994  49999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.46  E-value=7e-13  Score=104.78  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=87.5

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          247 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       247 v~~~~~l~~a~~~m~~~~-----i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.+|+...    .   .   +.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~---~---~~~v~~-------------~   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D---P---DTPVSD-------------I   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C---C---cchHHH-------------H
Confidence            568889999999998877     4789999988999999999998751    0   0   245565             4


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                      +..++.++.+++++.++++.|..++.+.+||+| ++|+++|+||..|+++++
T Consensus        59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence            556788999999999999999999999999999 469999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.46  E-value=1.5e-12  Score=103.81  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=88.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  319 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  319 (376)
                      ++.++.+++++.++++.|.+++.+.+||+|+   +|+++|+++..|+..... .        ..++.+            
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence            4668899999999999999999999999997   799999999999875321 0        134555            


Q ss_pred             ccCCCcceEecC--CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          320 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       320 ~im~~~~~~~~~--~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                       +|..++.++..  ++++.++++.|..++.+++|||| ++|+++|+||..|+++
T Consensus        62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence             55555667766  99999999999999999999999 4799999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.46  E-value=1.4e-12  Score=102.83  Aligned_cols=109  Identities=19%  Similarity=0.374  Sum_probs=89.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+|+ |+++|+++..|+.+...+.... .   +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence            4678899999999999999999999999997 9999999999999865432211 0   235555             45


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..++.++..++++.+++++|.+ . +.+|||+ ++|+++|+||.+|+++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence            5678899999999999999988 3 3478898 47999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.8e-12  Score=103.30  Aligned_cols=111  Identities=16%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCC-CCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA-GSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~-g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++..+.+++++.+|++.|.+++.+.+||+++   + +   +++|+++..|+++++......      ....         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------   60 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR---RES---DAYGIVTMRDILKKVVAEGRD------PDRV---------   60 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC---CCC---cEEEEEehHHHHHHHHhCCCC------CCcc---------
Confidence            5788999999999999999999999999975   4 6   899999999998865432110      0011         


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         .+.++|..++.++.+++++.+|++.|.+++...+||+|+ |+++|+++..|+++
T Consensus        61 ---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          61 ---NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             ---CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence               234557778999999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.45  E-value=1.1e-12  Score=103.46  Aligned_cols=106  Identities=20%  Similarity=0.387  Sum_probs=89.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++..+.++.++.+.|.+++.+.+||+|++|+++|+++.+|+.....         .+.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence            5678899999999999999999999999998899999999999864211         0245666             44


Q ss_pred             CCcceEecC-CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~-~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++..+.. ++++.++++.|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence            445566666 99999999999999999999999 4799999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.8e-12  Score=104.45  Aligned_cols=115  Identities=14%  Similarity=0.192  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc-cc-----ccccccHHHHHhcCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-----HLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~-~~-----~~~~~~v~~~l~~~~~~~  316 (376)
                      ++.++.+++++.+|++.|.+.+++.+||+|+ |+++|+++..|+.+........ ..     .....++.+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ---------   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence            4678999999999999999999999999996 9999999999998754321100 00     000122333         


Q ss_pred             CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                          +|..++.++..++++.++++.|.+++.+++||+| ++|+++|++|+.|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY  122 (122)
T ss_pred             ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence                5666788999999999999999999999999999 46899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.44  E-value=3.5e-12  Score=101.73  Aligned_cols=111  Identities=24%  Similarity=0.427  Sum_probs=95.0

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163          240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  319 (376)
Q Consensus       240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  319 (376)
                      |...++++.++.++.+|+..|.++++.++||++ .++++|++|.+|+......+....     .++.+            
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------   66 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------   66 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence            446789999999999999999999999999996 448999999999999776443321     13555            


Q ss_pred             ccCCCcceEecCCCCHHHHHHHHhc-CCCcEEEEEeCCCC-eEEEEEeHHHHH
Q 017163          320 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF  370 (376)
Q Consensus       320 ~im~~~~~~~~~~~tl~~a~~~m~~-~~~~~l~VVd~~~~-~~~GvIs~~Dil  370 (376)
                       +|..++.++.+++++.++++.|.. ++++++||+|+ ++ +++|++|.+|++
T Consensus        67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~  117 (117)
T COG0517          67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL  117 (117)
T ss_pred             -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence             677789999999999999999999 79999999995 65 999999999974

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.44  E-value=2.5e-12  Score=103.34  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-c----ccccccHHHHHhcCCCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-I----HLDEMNIHQALQLGQDANP  317 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-~----~~~~~~v~~~l~~~~~~~~  317 (376)
                      ++.++++++++.+|++.|.+.+.+++||+|++|+++|+++..|+........... .    .....++.+          
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence            4678899999999999999999999999999899999999999987543211100 0    011234554          


Q ss_pred             CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                         +|..++.++..++++.++++.|.+++.+.+||+| + |+++|++|..|+++
T Consensus        72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~  120 (121)
T cd04584          72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR  120 (121)
T ss_pred             ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence               5556788999999999999999999999999999 4 89999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.44  E-value=8e-12  Score=123.08  Aligned_cols=206  Identities=12%  Similarity=0.135  Sum_probs=139.6

Q ss_pred             CeeecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeC
Q 017163           82 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  158 (376)
Q Consensus        82 ~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~  158 (376)
                      ...|++.+    -..-+|..++...+...+.-+   .++.        +..+.+......       +..+|..+++++.
T Consensus        43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-------v~~iMi~~pvtv~  103 (479)
T PRK07807         43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-------SRDLVFDTPVTLS  103 (479)
T ss_pred             cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-------cccccccCCeEEC
Confidence            34788754    234567777776666554111   2332        222222222111       1236788999999


Q ss_pred             CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccccc
Q 017163          159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  238 (376)
Q Consensus       159 ~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~  238 (376)
                      +++++.+|++.|.+++++.+||+|+   ++   +++|++|.+|+...     .        ...            .+.+
T Consensus       104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~-----~--------~~~------------~V~d  152 (479)
T PRK07807        104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV-----D--------RFT------------QVRD  152 (479)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC-----c--------cCC------------CHHH
Confidence            9999999999999999999999975   56   89999999998421     0        011            2445


Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCC
Q 017163          239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  318 (376)
Q Consensus       239 ~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  318 (376)
                      +|..+++++++++++.+|+++|.++++..+||+|++|+++|+||++||++........... ....+..           
T Consensus       153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~-g~l~V~a-----------  220 (479)
T PRK07807        153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAA-GRLRVAA-----------  220 (479)
T ss_pred             hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhh-hccchHh-----------
Confidence            5888999999999999999999999999999999999999999999999865432110000 0111222           


Q ss_pred             cccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCe
Q 017163          319 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR  359 (376)
Q Consensus       319 ~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~  359 (376)
                             ...+  .....+.++.|.+.++.. .++|-.+|.
T Consensus       221 -------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        221 -------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             -------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                   1122  233667788888888887 466743443

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.1e-12  Score=99.91  Aligned_cols=94  Identities=13%  Similarity=0.238  Sum_probs=83.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++.+.+++++.+|++.|.+++++.+||+|.   +|   +++|+++.+|+.+..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            5678999999999999999999999999975   56   899999999997611                          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                                .+.++.+++++.+|+++|.+++.+.+||+|++|+++|++|++|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1568899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.43  E-value=1e-12  Score=129.99  Aligned_cols=107  Identities=16%  Similarity=0.193  Sum_probs=93.3

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcc
Q 017163          244 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  320 (376)
Q Consensus       244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~  320 (376)
                      ..++++++++.+|+++|.+++++.+||+|+   +|+++|++|.+|+....     .   ..+.++.+             
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-----~---~~~~~V~d-------------  165 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-----M---SLDTKVKD-------------  165 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-----c---CCCCCHHH-------------
Confidence            358999999999999999999999999986   68999999999996421     0   11457777             


Q ss_pred             cCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          321 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       321 im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      +|..  +++++.+++++.+|++.|.++++++||||| ++++++|+||..|+++.
T Consensus       166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence            6664  788999999999999999999999999999 47999999999999885

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.43  E-value=3e-12  Score=100.18  Aligned_cols=103  Identities=16%  Similarity=0.276  Sum_probs=89.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..|+.+...          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence            466789999999999999999999999998 699999999999976321          234555             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|.+++..++||+| + |+++|+||..|++.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence            56788999999999999999999999999999 4 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.8e-12  Score=100.84  Aligned_cols=111  Identities=20%  Similarity=0.364  Sum_probs=92.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.++++.|.+++++++||+++   ++   +++|+++..++++++.......      ..           
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~------~~-----------   58 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGASA------LD-----------   58 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCCc------cc-----------
Confidence            5678899999999999999999999999975   46   8999999999998664321100      01           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus        59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence             1244557778999999999999999999999999999986 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.43  E-value=2.6e-12  Score=100.88  Aligned_cols=104  Identities=16%  Similarity=0.344  Sum_probs=89.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++..    ..      +.++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~~------~~~~~~-------------~~   58 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----DP------DETVEE-------------IM   58 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----Cc------cccHHH-------------hC
Confidence            5678899999999999998888889999987 999999999999752    00      234555             55


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+|+..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~  106 (107)
T cd04610          59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIR  106 (107)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhc
Confidence            56788999999999999999999999999999 4699999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.42  E-value=3.6e-12  Score=101.31  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=91.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ..+++.+++++.+|++.|.+++.+.++|+++   +|   +++|+++.+|+++.+.....        ...          
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~----------   58 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD----------   58 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC----------
Confidence            3567899999999999999999999999975   56   89999999999875532110        011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        59 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          59 --PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             --CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence              234447778889999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.8e-12  Score=104.18  Aligned_cols=124  Identities=15%  Similarity=0.229  Sum_probs=92.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      .++.+.+++++.+|++.|.++++..+||+|+   +|   +++|+++..|++++.........    ....+..++.  ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~--~~   69 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLLL----YRTITFKELS--EK   69 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhh--hh
Confidence            4678999999999999999999999999975   46   89999999999886532111000    0000000000  00


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      .....+.+..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            00112346678899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.8e-12  Score=101.47  Aligned_cols=109  Identities=20%  Similarity=0.427  Sum_probs=91.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+.+...+||+++   +|   +++|+++..++.+++.....         ..+         
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~---------   57 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAP---------   57 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCc---------
Confidence            5678899999999999998888999999975   56   89999999999886642210         112         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|+..
T Consensus        58 ---v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          58 ---VRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ---HHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence               33446678899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.42  E-value=3e-12  Score=100.35  Aligned_cols=100  Identities=15%  Similarity=0.254  Sum_probs=86.4

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCC
Q 017163          245 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ  324 (376)
Q Consensus       245 ~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~  324 (376)
                      +++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+....           ..++.+             +|..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~-------------~~~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVD-------------YIVR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhh-------------hhhc
Confidence            36889999999999999999999999997 9999999999997521           123333             4455


Q ss_pred             cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          325 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       325 ~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            688999999999999999999999999998 3 89999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=5.3e-12  Score=99.18  Aligned_cols=111  Identities=23%  Similarity=0.448  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++..++++.++++.|.+++.+.+||+|++++++|+++.+|+............    ..+.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence            46678999999999999999999999999988999999999999886643222110    11333             44


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|...+.+.++|+|+ +|+++|+++..|+++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  112 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR  112 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence            567889999999999999999999999999994 699999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.42  E-value=3e-12  Score=124.53  Aligned_cols=118  Identities=12%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+  ++++++.++++.++++.+.+++++++||.+++ ++++|+++.+|++....++        ...+.+    
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~----  259 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS----  259 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence            56777986  79999999999999999999999999999864 6999999999998644211        123444    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +| +++.++++++++.++++.|.+++.|..+|+| |.|.++|+||..||+..++|
T Consensus       260 ---------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       260 ---------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ---------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence                     34 3578999999999999999999999999999 57999999999999999976

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.42  E-value=4.6e-12  Score=100.04  Aligned_cols=108  Identities=21%  Similarity=0.430  Sum_probs=91.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++++++.+++++.+|++.|.+++...+||+++   +|   +++|+++..++++.+....           .+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~--------   56 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS--------   56 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence            46788999999999999999999999999975   56   8999999999987543210           11        


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                          +.++|..++.++.+++++.+|++.|.+++...+||++++|+++|++++.|+.+
T Consensus        57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                23336668889999999999999999999999999998999999999999865

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.42  E-value=1.9e-12  Score=119.49  Aligned_cols=113  Identities=17%  Similarity=0.292  Sum_probs=97.6

Q ss_pred             cccccccCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          234 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       234 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      .+++++|.++ +.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+......+..     .+.++.+     
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~-----  224 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD-----  224 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence            3677889888 9999999999999999999999999999999999999999999885432211     1346666     


Q ss_pred             CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEe
Q 017163          313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  365 (376)
Q Consensus       313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs  365 (376)
                              +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+|+
T Consensus       225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~  268 (268)
T TIGR00393       225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH  268 (268)
T ss_pred             --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence                    6777889999999999999999999999999999 4689999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.41  E-value=1.2e-12  Score=106.41  Aligned_cols=113  Identities=15%  Similarity=0.225  Sum_probs=92.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++++++.+++++.+|++.|.+++++.+||+|+   ++   +++|+++..++++.+......       ..          
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~----------   58 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PS----------   58 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CC----------
Confidence            35788999999999999999999999999975   46   799999999998755432111       11          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHH---------hCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                        ..++++|.+++.++.+++++.++.++|.         +.+..++||+|++|+++|++|++|++..
T Consensus        59 --~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          59 --DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence              2355669999999999999999999653         3367889999988999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.41  E-value=3.6e-12  Score=126.46  Aligned_cols=112  Identities=14%  Similarity=0.124  Sum_probs=97.7

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163          240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  316 (376)
                      |.++++++.+++++.+|+++|.+++++.+||+|+   +|+++|++|.+|+....         ..+.++.+         
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~e---------  167 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSE---------  167 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHH---------
Confidence            5578899999999999999999999999999987   48999999999996532         11356777         


Q ss_pred             CCcccCCCc--ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          317 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       317 ~~~~im~~~--~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                          +|..+  +.++.+++++.+|++.|.+++++++|||| ++++++|+||.+||++++.
T Consensus       168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence                56544  78999999999999999999999999999 4799999999999998863

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=2.5e-12  Score=126.44  Aligned_cols=113  Identities=12%  Similarity=0.167  Sum_probs=98.0

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163          237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  316 (376)
                      .+.|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+...      . .   ..++.+         
T Consensus        91 ~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~------~-~---~~~V~d---------  150 (475)
T TIGR01303        91 RDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGV------D-R---FTQVRD---------  150 (475)
T ss_pred             hhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcC------C-C---CCCHHH---------
Confidence            345777889999999999999999999999999997 5799999999998431      0 1   235666         


Q ss_pred             CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                          +|..+++++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++..
T Consensus       151 ----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       151 ----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI  203 (475)
T ss_pred             ----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence                7788899999999999999999999999999999 4799999999999998754

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.41  E-value=2.4e-12  Score=102.49  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=87.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++.++.+++++.+|++.|.+++ .+.+||+|+   ++   +++|+++..|+++......         ...++       
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v-------   59 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTV-------   59 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccch-------
Confidence            5678899999999999997775 889999975   56   8999999999988543110         01222       


Q ss_pred             cccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                           .++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        60 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          60 -----IQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             -----hhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                 233442  3568999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.41  E-value=5.3e-12  Score=98.99  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++...              .+         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~---------   52 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GC---------   52 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cc---------
Confidence            4678899999999999999999999999965   56   8999999999986310              11         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         ++++|.+.+.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|++.
T Consensus        53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence               22336667788999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=1.8e-11  Score=120.46  Aligned_cols=111  Identities=16%  Similarity=0.184  Sum_probs=95.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      .|.++++++.+++++.+|+++|.+++++.+||+|.    +   +++|++|.+|+...     .        ...      
T Consensus        93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~-----~--------~~~------  146 (475)
T TIGR01303        93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV-----D--------RFT------  146 (475)
T ss_pred             ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC-----C--------CCC------
Confidence            56788999999999999999999999999999853    5   79999999998320     0        011      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                            .+.++|+.+++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++...
T Consensus       147 ------~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       147 ------QVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI  203 (475)
T ss_pred             ------CHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence                  244558889999999999999999999999999999999999999999999998654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.9e-12  Score=101.40  Aligned_cols=114  Identities=18%  Similarity=0.289  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.+++++.+|++.|.+++++.+||+|+   ++   +++|+++..++++++.......     ..     .+    +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-----~~-----~~----~   61 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLD-----LE-----RL----V   61 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchh-----HH-----HH----h
Confidence            4678999999999999999999999999975   56   8999999999998764322110     00     00    0


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|.+++.++.+++++.+|++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            12344557778999999999999999998765  5999998999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=7.2e-12  Score=99.27  Aligned_cols=110  Identities=19%  Similarity=0.361  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.+|++.|.+.+.+.+||+++   ++   +++|+++..++++++.....        ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~----------   57 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDT----------   57 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Ccc----------
Confidence            5678899999999999999999999999975   46   89999999999886543211        111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus        58 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          58 --PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             --CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence              233447778999999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.3e-12  Score=102.19  Aligned_cols=120  Identities=20%  Similarity=0.411  Sum_probs=94.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..++++++.........      .....    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~------~~~~~----~~   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGE------ESLTK----ER   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccc------ccccc----cc
Confidence            5678999999999999999999999999975   46   899999999999876543221100      00000    01


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|++.
T Consensus        66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            12345567778999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=7.7e-12  Score=104.15  Aligned_cols=126  Identities=19%  Similarity=0.304  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc------ccccccHHHHHhcC---
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQLG---  312 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~------~~~~~~v~~~l~~~---  312 (376)
                      +++++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+.+.+..... ..+      .....++.+++...   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            5678999999999999999999999999997 999999999999886543221 000      00001111111000   


Q ss_pred             ----CCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          313 ----QDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       313 ----~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                          .....+. .+|..++.++..++++.+++..|.+++.+++||++ + |+++|+||..|++.
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence                0000111 15667899999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.39  E-value=3.7e-12  Score=125.46  Aligned_cols=113  Identities=17%  Similarity=0.323  Sum_probs=98.4

Q ss_pred             cccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          238 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       238 ~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +.|.+++.++.+++++.+++++|.+++++++||+|++   ++++|+++.+|+.....         .+.++.+       
T Consensus        84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d-------  147 (450)
T TIGR01302        84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE-------  147 (450)
T ss_pred             CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH-------
Confidence            3366688999999999999999999999999999987   79999999999975321         1346666       


Q ss_pred             CCCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          315 ANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       315 ~~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                            +|. .++.++.+++++.++++.|.+++.+.+|||| +.|+++|+||..||++.+
T Consensus       148 ------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 ------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             ------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence                  566 4789999999999999999999999999999 579999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.39  E-value=3.8e-12  Score=126.69  Aligned_cols=115  Identities=21%  Similarity=0.368  Sum_probs=100.4

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      +++.|.+++.++.+++++.+++++|.+++++++||+|++++++|+++.+|+.....      .   ..++.+        
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d--------  151 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE--------  151 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence            34557789999999999999999999999999999999999999999999964211      1   245666        


Q ss_pred             CCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          316 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       316 ~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                           +|. +++.++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus       152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence                 555 6789999999999999999999999999999 579999999999999875

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.39  E-value=3.1e-12  Score=116.44  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=103.4

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      .|.++|.  ....++.+++++.+-.++-.+.+.+++||+|+..+++|++|.+|+.....          +.++..     
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK-----  253 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK-----  253 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence            4667777  67889999999999999999999999999999999999999999977221          356666     


Q ss_pred             CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                              +|++++.++.+.+|+..+.++|.-.++.-+||+| ++.+++|+||++|+++.|
T Consensus       254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l  305 (432)
T COG4109         254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence                    8999999999999999999999999999999999 589999999999999986

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.39  E-value=8.8e-12  Score=99.37  Aligned_cols=111  Identities=18%  Similarity=0.367  Sum_probs=91.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.++++.|.+.+++.+||+|+   +|   +++|+++..|+++.+......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   58 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS----------   58 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence            4567899999999999999999999999975   56   899999999998865321100       001          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~--g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.+++++|.+++...+||+|++  |+++|++|.+|++.
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence              1334477788999999999999999999999999999987  89999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.38  E-value=7.3e-12  Score=98.74  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=89.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+|.   +|   +++|+++..+++...             ...+         
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~---------   54 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT---------   54 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence            5788999999999999999999999999975   56   899999999986421             0112         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus        55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence               33446677889999999999999999999999999999999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.37  E-value=4.1e-12  Score=120.42  Aligned_cols=117  Identities=16%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             CCCCCCC--ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccc
Q 017163          147 GRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  224 (376)
Q Consensus       147 ~~~~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i  224 (376)
                      +++|.++  ++++++++++.+|++.|.+++...+||+|+   +|   +++|+++..|+.+++.....        .    
T Consensus       200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~~--------~----  261 (321)
T PRK11543        200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGGA--------L----  261 (321)
T ss_pred             HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCCC--------c----
Confidence            3467777  999999999999999999999999999975   57   89999999999875532100        0    


Q ss_pred             ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          225 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       225 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                              ...+.++|.+++.++.+++++.+|++.|.++++..+||+|++|+++|++|++|++++
T Consensus       262 --------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 --------TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             --------CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                    123456688899999999999999999999999999999988999999999999863

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.2e-11  Score=98.19  Aligned_cols=111  Identities=14%  Similarity=0.247  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.+|++.|.+.+.+.+||+|+   ++   +++|+++..++.+.+.....       +...          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~~-------~~~~----------   58 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESEE-------LKDA----------   58 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhhh-------hcCC----------
Confidence            3567899999999999999999999999975   56   79999999999874332100       0111          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        59 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          59 --KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             --cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence              233447778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.37  E-value=5.4e-12  Score=124.55  Aligned_cols=117  Identities=14%  Similarity=0.234  Sum_probs=101.2

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  308 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  308 (376)
                      .+++++|++++.+++++.++.+|++.|.+     ++...++|+|++++++|+++.+|++..     .     .+.++++ 
T Consensus       131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a-----~-----~~~~v~~-  199 (449)
T TIGR00400       131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA-----K-----PEEILSS-  199 (449)
T ss_pred             chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC-----C-----CCCcHHH-
Confidence            35677799999999999999999999975     466789999999999999999998641     1     1245666 


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                  +|.+++.++.+++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus       200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        6777788999999999999999999999999999 5799999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.1e-11  Score=100.17  Aligned_cols=123  Identities=20%  Similarity=0.326  Sum_probs=94.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.++.++.+|+++|.+++...+||++.  ++|   +++|+++..++++++.........    ......    ...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~~----~~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI----KTGNGL----EAI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc----cccccc----hhh
Confidence            5678899999999999999999999999975  237   899999999999876532111000    000000    001


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            12344557778999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.36  E-value=1.3e-11  Score=98.80  Aligned_cols=113  Identities=17%  Similarity=0.252  Sum_probs=89.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          243 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~-i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+............ ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~-------------~   66 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSE-------------V   66 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHH-------------h
Confidence            4567899999999999998877 899999998 999999999999875432110000 01234555             6


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcE---EEEEeCCCCeEEEEEeHHHHHH
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRR---LVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~---l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      |..++.++.+++++.++++.|.+++.++   .+||+ ++|+++|+||..|+++
T Consensus        67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~  118 (119)
T cd04598          67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence            6678999999999999999999998643   46888 4699999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.36  E-value=1.2e-11  Score=97.38  Aligned_cols=100  Identities=22%  Similarity=0.343  Sum_probs=86.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  319 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  319 (376)
                      ....+.+++++.++.+.|.+.+...+||+|+   +|+++|+++.+|+.....+                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            4567899999999999999999999999998   6999999999999774421                           


Q ss_pred             ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                       +|..++.++..++++.++++.|.+++.+.+||+++  |+++|+||..|++++
T Consensus        56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLKA  105 (105)
T ss_pred             -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhcC
Confidence             12345779999999999999999999999999973  899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=9.2e-12  Score=98.89  Aligned_cols=112  Identities=23%  Similarity=0.300  Sum_probs=91.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.+|++.|.+++.+.+||+++   ++   +++|+++..++++.+.......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~-----------   59 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGV-----------   59 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCC-----------
Confidence            5678899999999999999989999999975   56   8999999999988664321000     001           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          60 -ATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             -ccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence             1344557778889999999999999999999999999987 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.36  E-value=1.6e-11  Score=96.67  Aligned_cols=106  Identities=20%  Similarity=0.336  Sum_probs=89.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.++.++.++++.|.+++...+||+++   ++   +++|+++..|+++....            ..+         
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~---------   55 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS---------   55 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence            5678899999999999999999999999975   46   89999999999874311            011         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|...+.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus        56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence               23346677889999999999999999999999999998999999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=6e-12  Score=119.50  Aligned_cols=118  Identities=16%  Similarity=0.166  Sum_probs=97.1

Q ss_pred             CCCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163          146 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  223 (376)
Q Consensus       146 ~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~  223 (376)
                      ++++|.+  +++++.+++++.+|++.|.+++...+||+|+   +|   +++|++|..|+.+.+....       .+.   
T Consensus       204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------~~~---  267 (326)
T PRK10892        204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------DLR---  267 (326)
T ss_pred             HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------Ccc---
Confidence            3457776  8999999999999999999998888888865   57   8999999999977432110       000   


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                               ...+.++|.+++.++.+++++.+|++.|.+++++.+||+| +|+++|++|++|+++.
T Consensus       268 ---------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        268 ---------QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                     1245666988999999999999999999999999999997 6899999999999873

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.6e-11  Score=97.73  Aligned_cols=110  Identities=19%  Similarity=0.327  Sum_probs=86.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++.++.+++++.+|++.|.+++ ...++|.+    .|   +++|+++..|+++++.....       ....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~---------   58 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDL---------   58 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------cccc---------
Confidence            4567899999999999998888 56667764    25   79999999999886532110       0011         


Q ss_pred             cccccccccCCCceEecCC--CCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         .+.++|..++.++.++  +++.+|++.|.+++...+||+|++|+++|++|++|+++
T Consensus        59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence               2334477778888887  68999999999999999999998999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2e-11  Score=95.78  Aligned_cols=104  Identities=19%  Similarity=0.365  Sum_probs=88.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  322 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im  322 (376)
                      ++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++..++.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence            4678889999999999999999999999998899999999999975210          123343             44


Q ss_pred             CCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       323 ~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      ..++.++..++++.++++.|.+++.+.+||+|+  |+++|+||..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            567889999999999999999999999999994  79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.35  E-value=1.6e-11  Score=97.03  Aligned_cols=109  Identities=16%  Similarity=0.240  Sum_probs=89.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.++.++.+|++.|.+++...+||+++  .+|   +++|+++..+++++......         ..++.       
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~-------   60 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLR-------   60 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHH-------
Confidence            4678999999999999999999999999975  126   89999999999986532110         01111       


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                           +++ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus        61 -----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          61 -----DLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -----HHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                 223 36788999999999999999999999999998899999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.3e-11  Score=101.19  Aligned_cols=125  Identities=18%  Similarity=0.367  Sum_probs=94.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC--Ccc-cc--ccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS--SLP-IL--QQPVSSI  227 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~--~~~-~~--~~~i~~l  227 (376)
                      ++.++.+++++.+|++.|.+++++++||+|+   ++   +++|+++..++++++.........  ... ..  ......+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL   75 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence            5678999999999999999999999999975   56   899999999999877543211000  000 00  0000000


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                          ....+.++|.+++..+.+++++.+++++|.+++.+.+||+|+ |+++|++|.+|++.
T Consensus        76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence                011355667788899999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.35  E-value=1.7e-11  Score=97.27  Aligned_cols=111  Identities=19%  Similarity=0.349  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.++++.|.+.+.+.+||+++   ++   +++|+++..++.+++......       ..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~-----------   58 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LT-----------   58 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------cc-----------
Confidence            4567899999999999998888999999975   56   899999999999876532211       00           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        59 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          59 -LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             -CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence             1244457778889999999999999999999999999998899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.4e-11  Score=97.50  Aligned_cols=109  Identities=15%  Similarity=0.277  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|++.+.....        ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~----------   57 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK----------   57 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence            5678899999999999999999999999975   56   8999999999987542110        0011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|.+++.++.+++++.+|++.|.+++...+||+|+ |+++|+||..|++.
T Consensus        58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence              233447778899999999999999999999999999987 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=2.6e-11  Score=95.68  Aligned_cols=108  Identities=22%  Similarity=0.423  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.+++++.+|++.|.+++++.+||+++    +   +++|+++..+++++......         ..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~~----------   55 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------LA----------   55 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------cc----------
Confidence            5778999999999999999999999999953    5   79999999999885432110         01          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence              233446678899999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.34  E-value=9.7e-12  Score=102.27  Aligned_cols=128  Identities=19%  Similarity=0.344  Sum_probs=94.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccc--ccccc--
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ--PVSSI--  227 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~--~i~~l--  227 (376)
                      +++.++.+++++.+|++.|.+++.+++||+|+   ++   +++|+++..++++++...+.....  .+...  .....  
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~   73 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELAA   73 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHHH
Confidence            46788999999999999999999999999975   56   899999999998765432110000  00000  00000  


Q ss_pred             cc-cccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          228 QL-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       228 ~i-~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      .. ......+.++|..++.++.+++++.++++.|.+++.+.+||+| +|+++|++|++|+++
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            00 0011235566778899999999999999999999999999999 899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.6e-11  Score=101.17  Aligned_cols=129  Identities=16%  Similarity=0.250  Sum_probs=94.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC-CCC-ccccc--ccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSS-LPILQ--QPVSSIQ  228 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~-~~~-~~~~~--~~i~~l~  228 (376)
                      +++++.+++++.+|++.|.+++.+.+||+|+   ++   +++|+++..++++++....... ... ..+..  .+.....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            4677899999999999999999999999975   56   8999999999998664211100 000 00000  0000000


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      .......+.++|..++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            011122466778888999999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.34  E-value=1.9e-11  Score=96.63  Aligned_cols=109  Identities=20%  Similarity=0.371  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.++.++.+|++.|.+++.+++||+++    +   +++|+++..++.+.+.... .      ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~-~------~~~~----------   57 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG-L------DPDT----------   57 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC-C------CccC----------
Confidence            5678999999999999999999999999963    5   8999999999987543210 0      0011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.++++.|.+++.+++||+++ |+++|++|.+|+++
T Consensus        58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence              234447778999999999999999999999999999986 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.34  E-value=2.6e-11  Score=97.31  Aligned_cols=120  Identities=19%  Similarity=0.288  Sum_probs=93.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.++.++.+|++.|.+.+...+||+++    |   +++|+++..+++.+.........         ..+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            5678899999999999999999999999963    5   89999999999986543211110         000000011


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            12355667788999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.33  E-value=1.4e-11  Score=122.13  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=96.9

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       239 ~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      .|..+++++.+++++.+|+++|.+++++.+||+|++   ++++|+++.+|+.....         .+.++.+        
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d--------  163 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE--------  163 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH--------
Confidence            355678899999999999999999999999999874   89999999999974210         1356777        


Q ss_pred             CCCcccCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          316 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       316 ~~~~~im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                           +|..  ++.++.+++++.+|++.|.+++++.+|||| ++++++|+||.+||++..
T Consensus       164 -----iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        164 -----VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR  217 (495)
T ss_pred             -----hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence                 6665  789999999999999999999999999999 479999999999999764

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.33  E-value=2e-11  Score=121.27  Aligned_cols=118  Identities=14%  Similarity=0.240  Sum_probs=97.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+......+....    +.++.+       
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~----~~~v~~-------  404 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANP----DDAVSK-------  404 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCc----CCCHHH-------
Confidence            577889999999999999999999999999999999998899999999999988554321111    245666       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                            +|..++.++.+++++.++++.|.+++   .++|++ +|+++|+||.+|++++|
T Consensus       405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence                  66677889999999999999998764   355553 58999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.33  E-value=3.1e-11  Score=96.26  Aligned_cols=111  Identities=26%  Similarity=0.486  Sum_probs=94.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163          150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  229 (376)
Q Consensus       150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  229 (376)
                      +.+.++++.++.++.+|+..|.++++..+||++.    +   +++|++|.+|+++.+.......        .       
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~-------   62 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------L-------   62 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------c-------
Confidence            4578899999999999999999999999999964    2   6999999999999775433221        0       


Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHh-CCCCEEEEECCCC-cEEEEEeHHHHH
Q 017163          230 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT  287 (376)
Q Consensus       230 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~i~~lpVvd~~g-~lvGiis~~Di~  287 (376)
                           .+.++|..++.++.+++++.++.+.|.+ ++++++||+|+++ +++|++|++|++
T Consensus        63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                 2445577789999999999999999999 7999999999886 999999999973

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.33  E-value=3.8e-11  Score=94.79  Aligned_cols=109  Identities=24%  Similarity=0.421  Sum_probs=90.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.+|++.|.+++.+.+||+++    +   +++|+++..++.++......        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   55 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ-----------   55 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----------
Confidence            4678899999999999999989999999963    5   89999999999886532110        01           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+++
T Consensus        56 -~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          56 -TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             -cCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence             1234457778899999999999999999999999999998899999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.33  E-value=3.2e-11  Score=95.61  Aligned_cols=111  Identities=15%  Similarity=0.232  Sum_probs=90.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.++++.|.+++.+.+||+++    +   +++|+++..++++.+......     . ...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-----~-~~~~---------   59 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD-----P-ESTL---------   59 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC-----c-CcCC---------
Confidence            5678899999999999999999999999953    5   899999999998644321100     0 0112         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|..++.++.+++++.++++.|.+++..++||++++|+++|++|.+|++.
T Consensus        60 ---v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          60 ---VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             ---HHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence               33447778889999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.32  E-value=2.7e-11  Score=96.06  Aligned_cols=111  Identities=25%  Similarity=0.366  Sum_probs=92.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.++++.|.++++..+||++.   ++   +++|+++..++.+++.....        ..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   56 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD-----------   56 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence            5678999999999999999999999999975   46   79999999999886532100        00           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~  288 (376)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ .|+++|+++..|++.
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            01344557788999999999999999999999999999987 799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.4e-11  Score=97.80  Aligned_cols=120  Identities=22%  Similarity=0.396  Sum_probs=93.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+|.   +|   +++|+++..++++..........   .....       ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence            5678999999999999999999999999975   56   89999999999874311100000   00000       001


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|..++.++..++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            22345567778899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.32  E-value=4e-11  Score=94.65  Aligned_cols=108  Identities=19%  Similarity=0.421  Sum_probs=90.0

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      +++.++.++.++.+|++.|.+++..++||+++    +   +++|+++..++.+.+....         ...+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~~--------   57 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHAP--------   57 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccCc--------
Confidence            36788999999999999999889999999963    5   7999999999987542111         1122        


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                          +.++|.+++.++.+++++.+++++|.+++.+.+||+| +|+++|++|..|++.
T Consensus        58 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          58 ----VKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ----HHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                3344777889999999999999999999999999998 899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.31  E-value=3.7e-11  Score=95.72  Aligned_cols=109  Identities=18%  Similarity=0.279  Sum_probs=86.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++...+||+|....+|   +++|+++..+++...     .       ...+         
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-----~-------~~~~---------   58 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-----D-------SETP---------   58 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-----c-------cCCC---------
Confidence            467889999999999999989999999996421246   899999999986411     0       0111         


Q ss_pred             ccccccccCCCceEecC--CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|.....++..  ++++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus        59 ---v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          59 ---LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ---HHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence               33446666667756  999999999999999999999998999999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.8e-11  Score=97.22  Aligned_cols=119  Identities=19%  Similarity=0.426  Sum_probs=92.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.+++++.++++.|.+++.+.+||++.    |   +++|+++..++.+++........  ......+...      
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence            5778999999999999999999999999963    5   89999999999886643221100  0000111111      


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence             1344557778999999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=4.1e-11  Score=97.47  Aligned_cols=124  Identities=15%  Similarity=0.281  Sum_probs=92.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.+|+++|.+.+.+.+||+++   ++   +++|++|..++..++........     ......... ...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~~-~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEKE-RML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhhh-hhc
Confidence            4678899999999999999999999999975   46   89999999999876532110000     000000000 001


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd--~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|..+++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|++.
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            1234566888899999999999999999999999999994  4699999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.30  E-value=1.3e-11  Score=119.15  Aligned_cols=120  Identities=18%  Similarity=0.305  Sum_probs=104.8

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      +++.+..+.++|++..++.+|..+|.++|++.+.+++.   ++   ...||+|.+|+.+.+......       ..    
T Consensus       151 v~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~----  213 (610)
T COG2905         151 VGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KT----  213 (610)
T ss_pred             HHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cc----
Confidence            35678899999999999999999999999999999975   55   799999999999987653322       12    


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                              .+|+++|+.+++++..++.+.+|+-+|..+++.++||+ ++|+++|++|..||+.+..
T Consensus       214 --------~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         214 --------QKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --------cchhhhhccCceeecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhC
Confidence                    24666699999999999999999999999999999999 5899999999999999776

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=6.2e-11  Score=93.82  Aligned_cols=110  Identities=17%  Similarity=0.364  Sum_probs=88.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      .+..+.+++++.+|++.|.+++.+.++|.+    +|   +++|+++..++++++......      ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   58 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDT----------   58 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcC----------
Confidence            467889999999999999888877777663    36   899999999999866421100      0011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.+|++.|.+++...+||+| +|+++|++|.+|+++
T Consensus        59 --~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          59 --TVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             --CHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence              24445777788999999999999999999999999998 699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.30  E-value=2.9e-11  Score=117.31  Aligned_cols=121  Identities=17%  Similarity=0.266  Sum_probs=105.7

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163          141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  215 (376)
Q Consensus       141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~  215 (376)
                      |..+.+|+.|...++++.++.|+.+|+..+++.     .+..+.|+|.   ++   ++.|+++.++++.           
T Consensus       129 y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~-----------  191 (451)
T COG2239         129 YPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLT-----------  191 (451)
T ss_pred             CChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhc-----------
Confidence            999999999999999999999999999999854     4678899976   56   8999999999875           


Q ss_pred             CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                        ..-..            .++++|.+.++++.+++..+++.+++.+++.-++||||++++++|++|..|++..+.+
T Consensus       192 --a~~~~------------~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         192 --AEPDE------------LLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             --CCcHh------------HHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence              00122            3445588889999999999999999999999999999999999999999999997764

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.2e-11  Score=97.96  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=86.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhh--hccCCCCCcccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~--~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+.+....  .....   ......        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~--------   64 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSEL--------   64 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchhe--------
Confidence            4678899999999999999999999999975   56   89999999999862210  00000   000111        


Q ss_pred             ccccccccccCCCceEe------cCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHH
Q 017163          231 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  288 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~  288 (376)
                          .+.++|.++...+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        65 ----~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          65 ----TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ----EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                2344566554333      368899999999999999999999986 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4.5e-11  Score=96.24  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=94.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.+++++.+|++.|.+++++.+||+++    |   +++|+++..++.+.+........       ....+  .+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence            4678999999999999999999999999963    5   89999999999886654322110       00000  0111


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            22355667788999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.29  E-value=4.5e-11  Score=94.16  Aligned_cols=106  Identities=20%  Similarity=0.338  Sum_probs=86.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.++++.|.+++...+||+++   +|   +++|+++..+++...     .       ...+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~---------   55 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKP---------   55 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCC---------
Confidence            5678899999999999999999999999975   46   899999999986410     0       0112         


Q ss_pred             ccccccccCCCceEecC-CCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        56 ---v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          56 ---VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ---HHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence               33446555666666 999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=9.1e-11  Score=92.87  Aligned_cols=110  Identities=21%  Similarity=0.387  Sum_probs=89.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++.+.+++++.++++.|.+.+.+.+||+++    +   +++|+++..++++++......      ....          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   58 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREV----------   58 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccC----------
Confidence            5678899999999999999999999999964    3   799999999999865422100      0011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++++|++.
T Consensus        59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence              2344477788899999999999999999999999999865 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.28  E-value=4.9e-11  Score=118.40  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=96.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163          150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  229 (376)
Q Consensus       150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  229 (376)
                      |..+++++.+++++.+|+++|.+++++.+||+|+...++   +++|++|..|+....            ....+      
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~------  164 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETK------  164 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCc------
Confidence            668899999999999999999999999999997421136   899999999985411            01223      


Q ss_pred             cccccccccccCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          230 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       230 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                            +.++|+++  ++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++...
T Consensus       165 ------V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        165 ------LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             ------HHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                  44557765  889999999999999999999999999999999999999999998664

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=7.9e-11  Score=93.30  Aligned_cols=110  Identities=20%  Similarity=0.361  Sum_probs=89.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH-HHhhhccCCCCCccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~-~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..+++. .+.....       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~~~~-------~~~----------   57 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAEGRD-------PDT----------   57 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhccCC-------ccc----------
Confidence            5678999999999999999999999999953    5   8999999999873 2211100       000          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        ..+.++|...+.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|+++
T Consensus        58 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 --TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             --CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              1244457778889999999999999999999999999998899999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.28  E-value=1.1e-10  Score=115.17  Aligned_cols=164  Identities=16%  Similarity=0.235  Sum_probs=117.7

Q ss_pred             CeeecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeC
Q 017163           82 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  158 (376)
Q Consensus        82 ~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~  158 (376)
                      ...|++.+.    ..-+|..++..++......+   .+++.++-.    ..++..+..          +..+.++++++.
T Consensus        33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~----~~V~~Vk~~----------~~~~~~~~vtl~   94 (450)
T TIGR01302        33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA----EQVKRVKRA----------ENGIISDPVTIS   94 (450)
T ss_pred             cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH----HHHhhhccc----------cCceecCceEeC
Confidence            447877543    24568888887776654422   222211110    111111111          124667899999


Q ss_pred             CCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccccc
Q 017163          159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  238 (376)
Q Consensus       159 ~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~  238 (376)
                      +++++.+|+++|.+++++++||+|++...+   +++|+++.+|++...     .       ...            .+.+
T Consensus        95 ~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~------------~V~d  147 (450)
T TIGR01302        95 PETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGK------------PVSE  147 (450)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCC------------CHHH
Confidence            999999999999999999999997621115   899999999996411     0       112            2344


Q ss_pred             ccC-CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          239 ANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       239 ~m~-~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                      +|. .+++++.+++++.++++.|.+++...+||+|++|+++|++|..|+++..
T Consensus       148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence            577 4899999999999999999999999999999999999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.28  E-value=1e-10  Score=92.27  Aligned_cols=109  Identities=23%  Similarity=0.380  Sum_probs=90.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++.+.+++++.++++.|.+.+.+++||+++    +   +++|+++..|+.+.......             ..      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~-------------~~------   55 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE-------------AT------   55 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc-------------cc------
Confidence            5778999999999999999989999999963    5   79999999999875432110             00      


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.+.|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             1233447778999999999999999999999999999998899999999999865

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1.1e-10  Score=91.48  Aligned_cols=111  Identities=23%  Similarity=0.457  Sum_probs=91.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.++++.|.+++.+.+||++.   ++   +++|+++..++++++........       .          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~----------   58 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V----------   58 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence            4677899999999999999999999999975   46   89999999999987754322110       0          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence              023346667889999999999999999999999999999999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.27  E-value=8.9e-11  Score=91.70  Aligned_cols=102  Identities=19%  Similarity=0.394  Sum_probs=86.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++..+.+++++.++++.|.+++.+.+||+++    +   +++|+++..++++..             ...+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~~---------   52 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNRL---------   52 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccCC---------
Confidence            4677899999999999999999999999953    5   799999999997621             0111         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  287 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~  287 (376)
                         +.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus        53 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          53 ---VADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             ---HHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence               23446778899999999999999999999999999987 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.26  E-value=7.2e-11  Score=97.08  Aligned_cols=109  Identities=21%  Similarity=0.306  Sum_probs=80.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccc-------ccccHHHHHhcCCCC
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL-------DEMNIHQALQLGQDA  315 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~-------~~~~v~~~l~~~~~~  315 (376)
                      .+.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++............       ....+.++.....  
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--   79 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI--   79 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence            4678999999999999999999999999999999999999999998664322211000       0001122110000  


Q ss_pred             CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeC
Q 017163          316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA  355 (376)
Q Consensus       316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~  355 (376)
                        -++.|..++.++.+++++.+|++.|.+++++++||+|+
T Consensus        80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence              00124567889999999999999999999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.26  E-value=6e-11  Score=117.59  Aligned_cols=110  Identities=17%  Similarity=0.218  Sum_probs=91.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccc
Q 017163          154 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  233 (376)
Q Consensus       154 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~  233 (376)
                      ..++.+++++.+|+++|.+++.+.+||+|+..+++   +++|++|..|+...     .      .....           
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~-----------  161 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDT-----------  161 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCC-----------
Confidence            36899999999999999999999999997422246   89999999998531     0      01122           


Q ss_pred             cccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          234 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       234 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                       .+.++|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++.
T Consensus       162 -~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        162 -KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             -CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence             34455875  78999999999999999999999999999999999999999999884

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.26  E-value=6.6e-11  Score=93.39  Aligned_cols=102  Identities=16%  Similarity=0.252  Sum_probs=84.2

Q ss_pred             eCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          157 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       157 v~~~~sl~~a~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      +.+++++.++++.|.+++     +..+||+++   ++   +++|+++.+++++.            . ...         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~~---------   53 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PDT---------   53 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Ccc---------
Confidence            568899999999998777     478999965   46   79999999988651            0 011         


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                         .+++++..++..+.+++++.++++.|.+++...+||+|++|+++|++|..|+++.
T Consensus        54 ---~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          54 ---PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             ---hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence               2334467778999999999999999999999999999989999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.26  E-value=2.1e-10  Score=106.72  Aligned_cols=164  Identities=15%  Similarity=0.217  Sum_probs=120.7

Q ss_pred             hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163           45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  124 (376)
Q Consensus        45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~  124 (376)
                      |..+++.|+|-.-.++++++.+.++.++++.+.+++....||++.+.++++|+++..|++..+..   .....       
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~-------  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF-------  133 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence            45568999997767899999999999999999999999999999776779999999999864421   00000       


Q ss_pred             hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163          125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  204 (376)
Q Consensus       125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~  204 (376)
                       .+..                   +|. +++++.+++++.++++.|.+++.+.+||+|+   .|   .++|+||..|++.
T Consensus       134 -~l~~-------------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle  186 (292)
T PRK15094        134 -SMDK-------------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE  186 (292)
T ss_pred             -CHHH-------------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence             1111                   233 4558999999999999999999999999975   56   7999999999999


Q ss_pred             HHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHH
Q 017163          205 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  260 (376)
Q Consensus       205 ~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  260 (376)
                      .+.........  ..-...+..+.             ..-..+....++.+..+.+
T Consensus       187 ~ivGei~de~d--~~~~~~i~~~~-------------~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        187 LIVGEIEDEYD--EEDDIDFRQLS-------------RHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             HHhCCCccccc--cccccccEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence            88754332210  00001122222             2234678888888887776

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.25  E-value=1.5e-10  Score=90.73  Aligned_cols=105  Identities=20%  Similarity=0.431  Sum_probs=88.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++++++.++.++.++++.|.+.+...+||+++    +   +++|+++..+++..      .       ...         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~---------   52 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDE---------   52 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------ccc---------
Confidence            35778999999999999998888889999953    5   89999999998751      0       011         


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         .+.++|...+.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence               233446677889999999999999999999999999999999999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.25  E-value=2.2e-10  Score=111.59  Aligned_cols=162  Identities=16%  Similarity=0.186  Sum_probs=122.2

Q ss_pred             hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163           45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  124 (376)
Q Consensus        45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~  124 (376)
                      |++.++.|+|-.-.++++++.+.++.++++.+.+++.+..||++++.++++|+++..|++..+.   .  ...       
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~-------  255 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF-------  255 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC-------
Confidence            3567899999887899999999999999999999999999999987778999999999985331   1  000       


Q ss_pred             hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163          125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  204 (376)
Q Consensus       125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~  204 (376)
                       .+..                   + .+++..+++++++.++++.|.+++.|.++|+|+   .|   .+.|++|.+|++.
T Consensus       256 -~l~~-------------------~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDile  308 (408)
T TIGR03520       256 -DWQS-------------------L-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIE  308 (408)
T ss_pred             -CHHH-------------------H-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHH
Confidence             1111                   2 235789999999999999999999999999975   56   7999999999999


Q ss_pred             HHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHH
Q 017163          205 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV  261 (376)
Q Consensus       205 ~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~  261 (376)
                      .+........   ......+..+.             .....+....++.+..+.|.
T Consensus       309 eivgei~de~---d~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       309 EIVGDISDEF---DDEDLIYSKID-------------DNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             HHhCCCCCcC---CcCccceEEeC-------------CCeEEEEeccCHHHHHHHhC
Confidence            8864322211   00111122221             23456777888998888873

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.25  E-value=1.2e-10  Score=91.66  Aligned_cols=108  Identities=19%  Similarity=0.383  Sum_probs=86.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++.+++++.+|++.|.+++++.+||+++    +   +++|+++..++.+++......       ...          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~----------   57 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSL----------   57 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCc----------
Confidence            5678899999999999999999999999953    5   799999999999866432110       011          


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                        .+.++|.+++.++++++++.+++++|.+ . ..+||++++|+++|++|.+|+..
T Consensus        58 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          58 --PVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             --CHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence              2334467788899999999999999987 3 34789988899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.25  E-value=1.6e-10  Score=114.70  Aligned_cols=115  Identities=19%  Similarity=0.183  Sum_probs=96.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      .+..+++++.+++++.+|+++|.+++++.+||++++..++   +++|+++.+|+.. ..           ....      
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~------  159 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKST------  159 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCC------
Confidence            4567789999999999999999999999999997522236   8999999999863 10           0112      


Q ss_pred             ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          229 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       229 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                            .+.++|.+  +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++..
T Consensus       160 ------~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        160 ------PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                  34455876  889999999999999999999999999999999999999999998753

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.24  E-value=2.2e-10  Score=90.50  Aligned_cols=109  Identities=14%  Similarity=0.235  Sum_probs=88.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++.+.++.++.+|++.|.+++...++|+++    +   +++|+++..++++.+.....       ...           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~-----------   56 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSS-----------   56 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCC-----------
Confidence            4678899999999999999999999999953    4   79999999999875531100       001           


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..+.++|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus        57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence             1234447778899999999999999999999999999974 89999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.23  E-value=1.6e-10  Score=92.72  Aligned_cols=119  Identities=16%  Similarity=0.292  Sum_probs=92.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ++.++++++++.+|++.|.+.+.+.+||+|+   ++   +++|+++..++.+..........         ..+. ...+
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence            5678899999999999999999999999976   46   89999999999875432211100         0000 0011


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ...+.++|..++.++..++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            12344557778899999999999999999999999999986 99999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.21  E-value=9.3e-11  Score=119.58  Aligned_cols=120  Identities=16%  Similarity=0.254  Sum_probs=99.2

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.++..++++++++.++++.|.+++.+.+||+|+   ++   +++|+++.+|+.+.+......       ..     
T Consensus       450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~-----  511 (574)
T PRK01862        450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD-----  511 (574)
T ss_pred             HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc-----
Confidence            3467888899999999999999999999999999975   56   899999999998754321100       00     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~--g~lvGiis~~Di~~~~~  291 (376)
                             ..+.++|.+++.++++++++.+|++.|.+++.+.+||+|++  ++++|++|++|+.+...
T Consensus       512 -------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 -------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             -------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                   13445588889999999999999999999999999999876  58999999999998653

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.20  E-value=3e-10  Score=88.89  Aligned_cols=100  Identities=18%  Similarity=0.293  Sum_probs=84.4

Q ss_pred             eEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccc
Q 017163          155 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  234 (376)
Q Consensus       155 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~  234 (376)
                      +++.+++++.+|++.|.+.+...+||++.    +   +++|+++..++.+...              .+           
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~--------------~~-----------   51 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENATY--------------GD-----------   51 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhcc--------------cc-----------
Confidence            46789999999999999999999999963    5   8999999999876210              11           


Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       +.++|...+.++.+++++.++++.|.+++...+||+| +|+++|++|.+|+..
T Consensus        52 -~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          52 -VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -hhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence             2233666788999999999999999999999999997 699999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.18  E-value=1.5e-10  Score=106.84  Aligned_cols=110  Identities=15%  Similarity=0.220  Sum_probs=91.8

Q ss_pred             CCCCCCC-ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          147 GRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       147 ~~~~~~~-~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      +++|.++ +..+.+++++.+|++.|.+.+++.+||+|+   +|   +++|+++..|+.+++....        ....   
T Consensus       158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~---  220 (268)
T TIGR00393       158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKS---  220 (268)
T ss_pred             HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccC---
Confidence            3467777 899999999999999999999999999975   56   8999999999988542110        0112   


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEe
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  282 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis  282 (376)
                               .+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       221 ---------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       221 ---------EVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ---------cHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                     244558888999999999999999999999999999998899999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.15  E-value=5.8e-10  Score=87.62  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ....+.+++++.++.+.|.+++...+||+++...+|   +++|+++.+++.+....                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence            356789999999999999999889999996411036   89999999999874421                        


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                            +|.+++.++.+++++.++++.|.+++.+.+||+ ++|+++|++|++|+++
T Consensus        56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv-~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVV-DEGRLVGIITRKDLLK  104 (105)
T ss_pred             ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEE-ECCeEEEEEEhhhhhc
Confidence                  255678899999999999999999999999999 5899999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=5.4e-10  Score=92.95  Aligned_cols=126  Identities=25%  Similarity=0.476  Sum_probs=95.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC----CCCcccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS----SSSLPILQQPVSSIQ  228 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~----~~~~~~~~~~i~~l~  228 (376)
                      +++++.+++++.++++.|.+.+++.+||+++    +   +++|+++..++++++.......    +........++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            5778999999999999999999999999963    5   8999999999998775332100    00001112222221 


Q ss_pred             cccc-----------ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          229 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       229 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                       ..|           ...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           12355678888999999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.14  E-value=2.7e-10  Score=103.92  Aligned_cols=112  Identities=15%  Similarity=0.264  Sum_probs=96.6

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.  .....+.+++++.+-.++-.+.|.+|+||+|.   ..   +++|++|.+|++..       .      -+.    
T Consensus       193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------~------~~t----  249 (432)
T COG4109         193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------K------PST----  249 (432)
T ss_pred             hccccccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------C------CCc----
Confidence            444  56778899999999999999999999999976   44   89999999999761       0      122    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                              .+..+|+++++++.+.+++..+.++|.-.++.-+||+|++.+++|++|++|+++.+.
T Consensus       250 --------~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         250 --------TIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             --------cHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence                    234459999999999999999999999999999999999999999999999998665

>PRK11573 hypothetical protein; Provisional

Probab=99.12  E-value=1.1e-09  Score=106.61  Aligned_cols=123  Identities=12%  Similarity=0.223  Sum_probs=100.4

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  .++.+++.++++.++++.+.+++.+++||.+++ +.++|++..+|++....++.  .     .......+ 
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~--~-----~~~~~l~~-  259 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK--E-----FTKENMLR-  259 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC--c-----CCHHHHHh-
Confidence            5667785  469999999999999999999999999999764 79999999999987543221  0     11221111 


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  376 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~  376 (376)
                               ++ +++..++.+.++.++++.|.+++.|-..|+| |-|...|+||..||+..++|.
T Consensus       260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivGe  313 (413)
T PRK11573        260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhCC
Confidence                     22 4688999999999999999999999999999 689999999999999999873

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=1.7e-09  Score=84.75  Aligned_cols=104  Identities=21%  Similarity=0.368  Sum_probs=85.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      +++++.++.++.+++..|.+.+...+||+++   ++   +++|+++..++++..    .         ..+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~---------   53 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQ---------   53 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cch---------
Confidence            4678899999999999999989999999975   46   899999999987510    0         011         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                         +.++|..++.++..++++.++++.|.+++.+.+||+| +|+++|+++..|+..
T Consensus        54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence               2233666788999999999999999999999999998 479999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.09  E-value=1.1e-09  Score=87.71  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++.++.+++++.+|++.|...+ .+.+||+++    |   +++|+++..++++++......     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~-----------   58 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY-----------   58 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence            4567889999999999998877 889999963    5   799999999998755321100     000           


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCC---EEEEECCCCcEEEEEeHHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~---~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ....++++|..++.++.+++++.++++.|.+++..   ..||++++|+++|++|..|++.
T Consensus        59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            01134556888899999999999999999988753   4578888999999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.05  E-value=2e-09  Score=88.53  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=79.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCC-ccccc---ccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ  228 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~-~~~~~---~~i~~l~  228 (376)
                      ++.++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+++++.......... .....   ..+.++.
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            4678999999999999999999999999975   56   8999999999999775321110000 00000   0000110


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  274 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~  274 (376)
                      .   ...+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus        76 ~---~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 T---KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             h---hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            0   001122245678999999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.05  E-value=1.6e-09  Score=107.58  Aligned_cols=116  Identities=12%  Similarity=0.226  Sum_probs=93.0

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.+++.++.+++++.++++.|.+++++.+||+|+   ++   +++|+++..|+++.+......       ...    
T Consensus       338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~----  400 (454)
T TIGR01137       338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKAN-------PDD----  400 (454)
T ss_pred             HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCCC-------cCC----
Confidence            4578889999999999999999999999999999975   56   899999999998865421100       111    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                              .+.++|.+++.++.+++++.+++++|.+++   .|+|+++|+++|+||++|++..+
T Consensus       401 --------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 --------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                    244557788889999999999999998764   35565689999999999998753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.03  E-value=6.8e-10  Score=76.93  Aligned_cols=55  Identities=31%  Similarity=0.509  Sum_probs=51.4

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      +++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            5678889999999999999999999999999999999999999999999998653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.00  E-value=5.5e-09  Score=102.68  Aligned_cols=121  Identities=18%  Similarity=0.318  Sum_probs=100.1

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      .++++|.  .++.++..+.++.++.+.+.+++.+++||++ +.+.++|++..+|++.....+.. ..     ....    
T Consensus       207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~-----~~~~----  276 (429)
T COG1253         207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL-----DLRV----  276 (429)
T ss_pred             EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc-----chhh----
Confidence            3455575  4689999999999999999999999999999 56799999999999986654321 11     1111    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  376 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~  376 (376)
                               .. +++..++++.++.+++++|.+.+.|-..|+| |-|.+.|+||+.||+..++|.
T Consensus       277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvGe  330 (429)
T COG1253         277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVGE  330 (429)
T ss_pred             ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhCC
Confidence                     11 2688999999999999999999999999999 689999999999999999873

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.00  E-value=1.4e-09  Score=75.26  Aligned_cols=54  Identities=28%  Similarity=0.409  Sum_probs=50.7

Q ss_pred             cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       321 im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|++++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence            6778999999999999999999999999999999 47999999999999999863

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK11573 hypothetical protein; Provisional

Probab=98.99  E-value=2e-08  Score=98.01  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=107.5

Q ss_pred             hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163           45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  124 (376)
Q Consensus        45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~  124 (376)
                      |++.++.|+|-.-.++++++.+.++.++++.+.+.+.+..||++.+..+++|++...|++..+...    ...       
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~----~~~-------  252 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEF-------  252 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc----CcC-------
Confidence            356789999998999999999999999999999999999999998878899999999998643210    111       


Q ss_pred             hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163          125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  204 (376)
Q Consensus       125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~  204 (376)
                       ....+.   .              ..+++..|+++.++.++++.|.+++.|-..|+|+   .|   ...|++|..|++.
T Consensus       253 -~~~~l~---~--------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilE  308 (413)
T PRK11573        253 -TKENML---R--------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILE  308 (413)
T ss_pred             -CHHHHH---h--------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHH
Confidence             011111   0              1457889999999999999999999999999976   67   7999999999999


Q ss_pred             HHhhhc
Q 017163          205 CICRHF  210 (376)
Q Consensus       205 ~l~~~~  210 (376)
                      -+....
T Consensus       309 eivGei  314 (413)
T PRK11573        309 EIVGDF  314 (413)
T ss_pred             HHhCCC
Confidence            887544

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.93  E-value=6.2e-09  Score=101.20  Aligned_cols=116  Identities=17%  Similarity=0.285  Sum_probs=101.0

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  308 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  308 (376)
                      ..++..|+..++++.++.|+.+++..+.+.     .+..+.|+|++++++|+++.++++..-.          +..+.+ 
T Consensus       132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~-  200 (451)
T COG2239         132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD-  200 (451)
T ss_pred             hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH-
Confidence            456777999999999999999999999843     4678999999999999999999875211          245565 


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                                  +|.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus       201 ------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi  252 (451)
T COG2239         201 ------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             ------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence                        7777899999999999999999999999999999 589999999999998765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.81  E-value=9e-08  Score=91.67  Aligned_cols=110  Identities=16%  Similarity=0.239  Sum_probs=91.5

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      .......++.+..++++.|...+...+.|+|+++++.|.++..++....+..         .++.+             .
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~  307 (363)
T TIGR01186       250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------V  307 (363)
T ss_pred             ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------h
Confidence            3444566778899999999999999999999999999999999987755422         22333             2


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      +...+.++.+++++.+++..|..++.. +|||| ++|+++|+||..+++++|.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            334577899999999999999999998 99999 57999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=1.8e-07  Score=90.78  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=87.6

Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCCcc
Q 017163          247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC  326 (376)
Q Consensus       247 v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~  326 (376)
                      ..++.+..++++.|...+.+++.|+|++++++|+++..++.....++         .++.+             .+....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~~~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDA-------------ALIDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhh-------------hhccCC
Confidence            34667889999999999999999999999999999999997754322         22333             222357


Q ss_pred             eEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          327 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       327 ~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      .++.+++++.+++..|..+... +|||| ++|+++|+||..+++++|.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            7999999999999999998776 99999 57999999999999999864

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.68  E-value=2.7e-07  Score=90.75  Aligned_cols=129  Identities=20%  Similarity=0.339  Sum_probs=107.1

Q ss_pred             hhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhh
Q 017163           45 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  124 (376)
Q Consensus        45 l~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~  124 (376)
                      |.+.++.++|-+-.+++.++.+.++.++++.+.+.+.+..||++...+.++|++...|++........   ..       
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~-------  272 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DL-------  272 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---cc-------
Confidence            46788999999889999999999999999999999999999999777889999999999965532210   00       


Q ss_pred             hhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH
Q 017163          125 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  204 (376)
Q Consensus       125 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~  204 (376)
                       ..      .              ..-+++..|++..++.++++.|.+.+.|-..|+|+   -|   .+.|++|..||+.
T Consensus       273 -~~------~--------------~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~GlVTleDIiE  325 (429)
T COG1253         273 -DL------R--------------VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEGLVTLEDIIE  325 (429)
T ss_pred             -ch------h--------------hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEEEeEHHHHHH
Confidence             00      0              01237889999999999999999999999999987   57   7999999999999


Q ss_pred             HHhhhc
Q 017163          205 CICRHF  210 (376)
Q Consensus       205 ~l~~~~  210 (376)
                      .+....
T Consensus       326 eIvGei  331 (429)
T COG1253         326 EIVGEI  331 (429)
T ss_pred             HHhCCC
Confidence            886543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.54  E-value=1.9e-07  Score=87.21  Aligned_cols=107  Identities=18%  Similarity=0.265  Sum_probs=92.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCc
Q 017163          243 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  319 (376)
Q Consensus       243 ~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~  319 (376)
                      +++.++|+.++.++++....++++.+||..+   .++|+|+||.+|+-.+-. .        ...+.+            
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~-~--------~~~~~~------------  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLED-N--------SLLVSD------------  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhc-c--------cchhhh------------
Confidence            5678899999999999999999999999963   368999999999977621 1        234444            


Q ss_pred             ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          320 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       320 ~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                       +|..+.++...+.+|.++-+.|.+++-.+||||| +.|.++.+|+++|+.+.
T Consensus       176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence             7777788999999999999999999999999999 58999999999999875

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.54  E-value=1.1e-06  Score=82.15  Aligned_cols=166  Identities=16%  Similarity=0.206  Sum_probs=117.5

Q ss_pred             HcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCC---CCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCc
Q 017163           78 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL  154 (376)
Q Consensus        78 ~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (376)
                      .+.....|++.+    ...-+|.++....+..+...+   .+.+.++ ....+..|+.-+..             ...++
T Consensus        57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-------------~~~~p  118 (503)
T KOG2550|consen   57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-------------FINNP  118 (503)
T ss_pred             hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-------------cccCC
Confidence            344455687754    345567777776665554221   2333222 22234455543332             23466


Q ss_pred             eEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccc
Q 017163          155 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  234 (376)
Q Consensus       155 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~  234 (376)
                      +.+.|+.++.++++.-..++...+||.....-.+   +++|++|-+|+ .|+.++           ..            
T Consensus       119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~---KLvG~vtsrdi-~f~~~~-----------~~------------  171 (503)
T KOG2550|consen  119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS---KLVGIITSRDI-QFLEDN-----------SL------------  171 (503)
T ss_pred             cccCCcccchhhhhhcccccccccccccCCcccc---eeEEEEehhhh-hhhhcc-----------cc------------
Confidence            7889999999999999999999999996422223   89999999998 444211           11            


Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      -+.++|....++.....++.++-+++.+++...+||||++|+++.++++.|+.+
T Consensus       172 ~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  172 LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence            234457777789999999999999999999999999999999999999999976

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.52  E-value=1.8e-06  Score=82.74  Aligned_cols=110  Identities=11%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccc
Q 017163          153 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  232 (376)
Q Consensus       153 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  232 (376)
                      ......++.+..+++..|...+...+.|++.   ++   ++.|.++.+++..+....            ..         
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~---------  303 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QG---------  303 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cc---------
Confidence            3345667788999999999999999999975   55   799999999987754321            01         


Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~  293 (376)
                         +.+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+||+.++...+...
T Consensus       304 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       304 ---LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             ---hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence               1222445677899999999999999999998 99999999999999999999876543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.48  E-value=1.1e-06  Score=81.65  Aligned_cols=121  Identities=14%  Similarity=0.289  Sum_probs=101.2

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHh
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ  310 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~-~~~~~~~~~~v~~~l~  310 (376)
                      +|.|+|.  ..+..+..+++..++.+.+...-..++|+-.+ -+.++|++..+|+.++..++. +..     ..+..++ 
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a-  274 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA-  274 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence            5677774  46899999999999999999999999999854 357999999999999876554 322     2333322 


Q ss_pred             cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                   .+++.++.++++.+-+..|.+++-|--.||| |-|.+.|+||+.||+..++|
T Consensus       275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence                         2577999999999999999999999999999 68999999999999999876

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.45  E-value=7.3e-07  Score=77.54  Aligned_cols=119  Identities=13%  Similarity=0.352  Sum_probs=98.7

Q ss_pred             cccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          236 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       236 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      |+++|-  ...+++..+.++.+++..+.+...|++||+.+ .+.+.|++-..|++........      ...+.+.|   
T Consensus        69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL---  139 (293)
T COG4535          69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL---  139 (293)
T ss_pred             HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc---
Confidence            444453  35789999999999999999999999999975 4689999999999997653321      13445433   


Q ss_pred             CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                 +|...++.+-.+...++.+..++.|-..||| |=|-+-|.||..||+..++|
T Consensus       140 -----------RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         140 -----------RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             -----------ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence                       5788899999999999999999999999999 57999999999999999987

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.43  E-value=4.1e-06  Score=77.84  Aligned_cols=129  Identities=20%  Similarity=0.293  Sum_probs=106.9

Q ss_pred             hhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhh
Q 017163           46 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  125 (376)
Q Consensus        46 ~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~  125 (376)
                      ..-|+.|+|-.-+.+..+|.|++.++..+.+...-...+|+|..+..+.+|++-.+|+++.+.+..+    ++.+++   
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d~---  270 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKEDI---  270 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhHH---
Confidence            3467899998889999999999999999999999999999999888889999999999987754321    222221   


Q ss_pred             hHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHH
Q 017163          126 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  205 (376)
Q Consensus       126 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~  205 (376)
                              .+              .-.+++.++..+++.+-+..+.+++-|-..|+|+   -|   .+.|++|.+||+.-
T Consensus       271 --------~~--------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEE  322 (423)
T COG4536         271 --------LR--------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEE  322 (423)
T ss_pred             --------HH--------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHH
Confidence                    11              1346889999999999999999999999999976   67   89999999999996


Q ss_pred             Hhhh
Q 017163          206 ICRH  209 (376)
Q Consensus       206 l~~~  209 (376)
                      +.--
T Consensus       323 IVGd  326 (423)
T COG4536         323 IVGD  326 (423)
T ss_pred             Hhcc
Confidence            6543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=5.8e-06  Score=80.29  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=85.1

Q ss_pred             eCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccccccccc
Q 017163          157 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  236 (376)
Q Consensus       157 v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v  236 (376)
                      ..++.+..+|+..|...+...+.|+|.   ++   +++|+++..++.+.....            .++            
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~------------  339 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGL------------  339 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cch------------
Confidence            446778999999999999999999976   66   899999999997643211            111            


Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                      .+.+.....++.+++++.+++..|.+.... +||+|++|+++|+|++.+++..+..
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        340 DAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             hhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            122344677899999999999999987766 9999999999999999999987654

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.35  E-value=9.9e-07  Score=86.55  Aligned_cols=137  Identities=20%  Similarity=0.332  Sum_probs=106.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-----CcEEEEEeHHHHHHHHhccccccc--c---c---c
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQI--H---L---D  301 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-----g~lvGiis~~Di~~~~~~~~~~~~--~---~---~  301 (376)
                      .++++|+.+++++..-+.+....+.+...+..+.||||+.     +++.|+|-++.++.+++.+.+..-  .   +   .
T Consensus       583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            4689999999999999999999999999999999999962     589999999999998886555311  0   0   1


Q ss_pred             cccHHHHHhcCCC--------CCCC-c----ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHH
Q 017163          302 EMNIHQALQLGQD--------ANPS-L----GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD  368 (376)
Q Consensus       302 ~~~v~~~l~~~~~--------~~~~-~----~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~D  368 (376)
                      ..+.+++-+....        +... |    .+|...++++..++++..+...+.+-+.|++.||+. .++++|++|++|
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D  741 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVVGILTRKD  741 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-CCceeEEEehhh
Confidence            1222332221110        0000 0    168888999999999999999999999999999995 677899999999


Q ss_pred             HHHH
Q 017163          369 VFRF  372 (376)
Q Consensus       369 il~~  372 (376)
                      +.++
T Consensus       742 ~~~~  745 (762)
T KOG0474|consen  742 LARY  745 (762)
T ss_pred             hhhH
Confidence            9864

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.32  E-value=4.8e-06  Score=72.54  Aligned_cols=117  Identities=11%  Similarity=0.121  Sum_probs=96.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163          150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  229 (376)
Q Consensus       150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  229 (376)
                      ....++++..+.++.+++..+.+...+|+||+.++  ..   .+.||+-.+|+++|+......         -.+++   
T Consensus        75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--kD---~v~GIL~AKDLL~~~~~~~~~---------F~i~~---  137 (293)
T COG4535          75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KD---HVEGILLAKDLLPFMRSDAEP---------FDIKE---  137 (293)
T ss_pred             cHHHheeccccCCHHHHHHHHHHhccccCCcccCC--ch---hhhhhhhHHHHHHHhcCCccc---------ccHHH---
Confidence            35578999999999999999999999999999652  33   799999999999987543221         11222   


Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163          230 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       230 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~  293 (376)
                                +-+|.+.++.+..+...++-+...+.+-..|+|+-|-+-|.+|..|++..+...
T Consensus       138 ----------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd  191 (293)
T COG4535         138 ----------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD  191 (293)
T ss_pred             ----------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence                      235788899999999999999999999999999999999999999999977643

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.18  E-value=3.9e-06  Score=66.74  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=49.4

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ++.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            466778888999999999999999999999999999999999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.12  E-value=5.2e-06  Score=81.64  Aligned_cols=144  Identities=15%  Similarity=0.226  Sum_probs=106.3

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhh-ccCC-CC--Ccccc-
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FKHS-SS--SLPIL-  220 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~-~~~~-~~--~~~~~-  220 (376)
                      ++++|.++++++..-+.+....+.+.....+..||+|+.+.+. ...+.|++-.+.++..+.+. +.+. +.  ..+.. 
T Consensus       584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            4678999999999999999999999999999999998633221 12789999999988877443 1111 00  00000 


Q ss_pred             ----------ccccccccccccc----cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHH
Q 017163          221 ----------QQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  286 (376)
Q Consensus       221 ----------~~~i~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di  286 (376)
                                ..+++++.+....    .....+|++.+.++.+++++..++.++.+-+.+++.||++..+++|++|++|+
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~  742 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL  742 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence                      0122333222111    13456788999999999999999999999999999999998999999999999


Q ss_pred             HHHH
Q 017163          287 TALA  290 (376)
Q Consensus       287 ~~~~  290 (376)
                      ...-
T Consensus       743 ~~~~  746 (762)
T KOG0474|consen  743 ARYR  746 (762)
T ss_pred             hhHH
Confidence            8643

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.97  E-value=2.4e-05  Score=50.87  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=42.8

Q ss_pred             ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          326 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       326 ~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                      +.++.+++++.++++.|...+.+++||+++ +++++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            567899999999999999999999999994 68999999999998875

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.93  E-value=2.7e-05  Score=61.84  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       321 im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                      +|..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence            6777888999999999999999999999999999 4699999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.88  E-value=5e-05  Score=49.28  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=42.4

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                      +.++.+++++.++++.|.+++.+.+||++++++++|+++..++....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45788999999999999999999999999889999999999997643

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.71  E-value=0.0004  Score=68.83  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=89.1

Q ss_pred             ceEecCC-CCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC----CCC
Q 017163          244 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ----DAN  316 (376)
Q Consensus       244 ~~~v~~~-~~l~~a~~~m~~~~i~~lpVvd--~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~  316 (376)
                      +.+++.+ .++.+...+|.+...+..||+=  +..+++|.+.++|+...+.+...........+. -+.+...    ..+
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP  636 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence            5566555 8999999999999999999884  356899999999987754421110000000011 0110000    011


Q ss_pred             CCc---ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          317 PSL---GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       317 ~~~---~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                      .+.   .+|...+.++...++...+++++.+-+.+.+.|..  +|++.|+||..|++++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            122   26778899999999999999999999999887765  49999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.38  E-value=0.0013  Score=60.58  Aligned_cols=169  Identities=18%  Similarity=0.207  Sum_probs=114.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163          150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  229 (376)
Q Consensus       150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  229 (376)
                      +.+.++.++-+  +.||+++     -+++.+..    +|   +++-+=|..+|+..-..-+         ...-+.....
T Consensus       214 l~KTIvFitHD--LdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAndY---------V~~Fv~~v~~  270 (386)
T COG4175         214 LKKTIVFITHD--LDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPANDY---------VRDFVRNVDR  270 (386)
T ss_pred             hCCeEEEEecC--HHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHHH---------HHHHHhcCCh
Confidence            45677888766  8888875     36788874    57   8999999999886221100         0000111100


Q ss_pred             cccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 017163          230 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  307 (376)
Q Consensus       230 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~  307 (376)
                      . ..-+.+++|.+  ..+.-.+...-..+++.+.....+.+.+++..++.+|+++..++....                 
T Consensus       271 ~-~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~-----------------  332 (386)
T COG4175         271 S-RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA-----------------  332 (386)
T ss_pred             h-heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc-----------------
Confidence            0 00133455653  222222233345678888888888888888778899999999876630                 


Q ss_pred             HHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          308 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       308 ~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                    +..++.++..++++.+.+..+.+.... ++||| |+++++|+|+...++.+|.+
T Consensus       333 --------------~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         333 --------------LIDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             --------------ccccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence                          012466888999999999998888775 78999 58999999999999999976

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.005  Score=61.28  Aligned_cols=133  Identities=13%  Similarity=0.125  Sum_probs=95.1

Q ss_pred             CceEeCCC-CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC---Ccccccccccccc
Q 017163          153 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQ  228 (376)
Q Consensus       153 ~~v~v~~~-~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~---~~~~~~~~i~~l~  228 (376)
                      ++..+..+ +++.|...+|.+...+..||+-+ .++.   .++|.+..+++...+.........   .....+.+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666665 89999999999999999999854 2334   899999999988766422111100   0012223333222


Q ss_pred             cccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          229 LGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       229 i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                      -+.. .-..+++|...+.++...++..-+++++.+-+++.+.|. ++|++.|+||.+|++...
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence            2111 124567788889999999999999999999999999776 699999999999998754

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.88  E-value=0.0048  Score=59.72  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      ++..+|.+.......+.+  .|++.   ++.+++.|+|+     |+++..+...+.+...       +.++.+ +     
T Consensus       275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-----  331 (382)
T TIGR03415       275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-----  331 (382)
T ss_pred             eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence            345567433323233222  44444   78899999986     8888877665443111       112222 1     


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                              .....++++++++.+++..+.+++.. ++|+| + |+++|+|+..+++.+|.+
T Consensus       332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence                    12466899999999999999988765 88998 4 999999999999999875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.46  E-value=0.0085  Score=60.85  Aligned_cols=61  Identities=16%  Similarity=0.192  Sum_probs=52.9

Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEeHHHHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAK  291 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~--~g~lvGiis~~Di~~~~~  291 (376)
                      .+...|.++|.+++.++..+.|..|..+.+....++.+|+||+  +.-++|.++++.+..++.
T Consensus       585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            4455789999999999999999999988887777999999985  457899999999988765

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.11  E-value=0.091  Score=47.36  Aligned_cols=117  Identities=19%  Similarity=0.204  Sum_probs=69.5

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC-CCCccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPILQQPVSSIQL  229 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~-~~~~~~~~~~i~~l~i  229 (376)
                      .+.++.|+-|  +.||+++     ..++.|.+    .|   +++-.-++.+|++.-...|-.. -+........+...  
T Consensus       186 ~kTivfVTHD--idEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~--  249 (309)
T COG1125         186 GKTIVFVTHD--IDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLV--  249 (309)
T ss_pred             CCEEEEEecC--HHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchh--
Confidence            4567777765  7888876     46788986    36   8999999888876332211100 00000000111111  


Q ss_pred             cccccccccccCCCc----eEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          230 GTWVPRIGEANGRPF----AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       230 ~~~~~~v~~~m~~~~----~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                           .+.+.+.+..    -.........+++..+...+.+.+||+|++|+++|.+|+.++..
T Consensus       250 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         250 -----SVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             -----hHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence                 1111111110    11223334456888888899999999999999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.13  E-value=0.043  Score=50.85  Aligned_cols=88  Identities=15%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             HHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCC
Q 017163          164 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP  243 (376)
Q Consensus       164 ~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~  243 (376)
                      ..++..+.+.+.+.+.+++.   .+   +.+|+++..+....                                 .+..+
T Consensus       296 ~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~~~~  336 (386)
T COG4175         296 RVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------ALIDD  336 (386)
T ss_pred             chhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------ccccc
Confidence            34556666655555555532   34   57777777666542                                 13346


Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      +.++..++++.+.+..+.+... .+||+|++|+++|++++..++.++.
T Consensus       337 ~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         337 VLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence            7788999999998888876654 6899999999999999999998664

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.84  E-value=0.92  Score=41.09  Aligned_cols=113  Identities=15%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc-------cc-cc-cccccccHHHHHhcC
Q 017163          242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK-------AY-AQ-IHLDEMNIHQALQLG  312 (376)
Q Consensus       242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~-------~~-~~-~~~~~~~v~~~l~~~  312 (376)
                      ..++.++.+  +.||+++-     +.+.|.+ +|+++=+-+..+++.--++.       .. .. -.+...++.++....
T Consensus       187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            456666666  78888875     4688886 89999999988876532210       00 00 011112233322111


Q ss_pred             CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                      ..      .   .--.........+++..+...+...+|||| +.|+++|.||..+++..
T Consensus       259 ~~------~---~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EP------A---DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cc------c---cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence            10      0   011122334445588888999999999999 58999999999999865

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=92.42  E-value=0.3  Score=47.34  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=41.2

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      ..+.++++++++.+++..+.+.+. -+||+|+ |+++|+|++.+++..+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       333 AAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             ccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            357789999999999999888765 5889985 99999999999988653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	376
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		4e-34
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		5e-24
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		5e-24
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		3e-23
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		3e-23
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		1e-13
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		6e-13
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		1e-12
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		2e-08
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		5e-07
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		6e-04

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 41/334 (12%)
Query: 42  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 101
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 102 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134
Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188
Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239
Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIIN 289
Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 164/334 (49%), Gaps = 34/334 (10%)
Query: 41  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 100
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 101 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
            DF+ +++      S+  E   E        + K +L   R+++      P   +   P 
Sbjct: 75  ADFVNVIKYY-YQSSSFPEAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 181 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 231
Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + +
Sbjct: 232 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 281
Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
            + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 282 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 164/334 (49%), Gaps = 34/334 (10%)
Query: 41  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 100
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 101 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
            DF+ +++      S+  E   E        + K +L   R+++      P   +   P 
Sbjct: 74  ADFVNVIKYY-YQSSSFPEAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 180 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 230
Query: 281 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 340
           Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + +
Sbjct: 231 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 280
Query: 341 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
            + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 281 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 35  QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 94
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 95  VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 145
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 205
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 206 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 260
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 261 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 320
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 268
Query: 321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 269 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 35  QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 94
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 95  VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 145
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 205
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 206 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 260
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 261 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 320
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 261
Query: 321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 262 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 295
           I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y
Sbjct: 16  ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 296 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 355
             + L   ++ +AL    D      F G     C ++D L  +M+ +    V R  +V+ 
Sbjct: 73  NDLSL---SVGEALMRRSDD-----FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVDD 122
Query: 356 GSKRVEGIISLSDVFRFLL 374
              R+ G+++LSD+ +++L
Sbjct: 123 -VGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 256 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 315
            +  L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D 
Sbjct: 33  VIQXLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALXRRSDD 89
Query: 316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
                F G     C ++D L  + + +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 90  -----FEG--VYTCTKNDKLSTIXDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 288
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV- 80
Query: 289 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR 348
               KA A           A  L Q  + ++  N  RCQ    +D L ++M      G  
Sbjct: 81  ----KAVAG--------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIM----TGGRF 124
Query: 349 RLVIVEAGSKRVEGIISLSDVFRFLLG 375
           R V VE  + R+ GIIS+ DV +  +G
Sbjct: 125 RHVPVEE-NGRLAGIISIGDVVKARIG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-72
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-65
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-64
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-31
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-27
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-06
3ddj_A	296	CBS domain-containing protein; structural genomics	8e-20
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-11
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	5e-10
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	6e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-04
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-09
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-09
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-09
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	6e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-07
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	3e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	6e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	4e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	8e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	7e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	5e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  227 bits (580), Expect = 4e-72
 Identities = 73/345 (21%), Positives = 155/345 (44%), Gaps = 36/345 (10%)

Query: 31  EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 90
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 91  KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 149
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 209
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  +
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMN 173

Query: 210 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP 269
            K       +L+ P++ + +GTW                    +   + +L + ++S++P
Sbjct: 174 CKE----TAMLRVPLNQMTIGTWSNLA---------TASMETKVYDVIKMLAEKNISAVP 220

Query: 270 IVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMC 329
           IV+   +LL++Y   D+  L +D  Y+ + L   ++ +AL                   C
Sbjct: 221 IVNSEGTLLNVYESVDVMHLIQDGDYSNLDL---SVGEALLKRPANFD-------GVHTC 270

Query: 330 LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
             +D L  + + + +  V RL +V+  + ++EGI+SL+D+  +++
Sbjct: 271 RATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII 314

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  209 bits (532), Expect = 4e-65
 Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 41/354 (11%)

Query: 21  MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 80
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 81  LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 140
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ    
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD--- 123

Query: 141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 200
                      +PLV   P  SL +    +++NK+  +P+I            LY+ +  
Sbjct: 124 ---------SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHK 169

Query: 201 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 260
            ILK +             + + +  +Q+GT+            AM+R T  +  AL + 
Sbjct: 170 RILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIF 219

Query: 261 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 320
           VQ  VS++P+VD+   ++DIYS+ D+  LA +K Y  +    +++ +ALQ        + 
Sbjct: 220 VQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD---VSVTKALQHRSHYFEGV- 275

Query: 321 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
                   C   + L  ++ RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 276 ------LKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV 322

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  207 bits (528), Expect = 2e-64
 Identities = 79/352 (22%), Positives = 156/352 (44%), Gaps = 37/352 (10%)

Query: 23  PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 82
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 83  MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 142
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L +   
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 143 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 202
                           P   L E  LK+L+++   +P+I         + ++ + +   I
Sbjct: 121 --------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRI 171

Query: 203 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 262
           LK +  + + +      L+ P+  + + T                + T  +   + +L Q
Sbjct: 172 LKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQ 218

Query: 263 ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 322
             VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D        
Sbjct: 219 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFE----- 270

Query: 323 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
                 C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 271 --GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 319

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  113 bits (286), Expect = 8e-31
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 20/157 (12%)

Query: 218 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 277
             L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 278 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 337
           +++Y   D+  L K   Y  + L    + +AL    D       + +    C ++D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSD-------DFEGVYTCTKNDKLST 104

Query: 338 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 210
             +        + +V   + Q +V++VPII   G        +       D+L  I    
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN----VY---EAYDVLGLIKGGI 71

Query: 211 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAML------RPTASLGSALALLVQAD 264
            +  S                    +GEA  R                L + +  + +A 
Sbjct: 72  YNDLSL------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113

Query: 265 VSSIPIVDDNDSLLDIYSRSDI 286
           V    +VDD   L+ + + SDI
Sbjct: 114 VHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 69  VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 125
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 126 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 185
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 186 -PAGSCQEILYLASLSDILKCI 206
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  107 bits (269), Expect = 5e-27
 Identities = 40/317 (12%), Positives = 101/317 (31%), Gaps = 48/317 (15%)

Query: 57  SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 116
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 117 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 176
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 177 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 236
             PI++         +++ L +  D+++ +      +      + + V            
Sbjct: 117 GAPIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVA--------- 161

Query: 237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 296
                       P   L      +V+     +P+V +   L+ I + +D   L       
Sbjct: 162 -----------TPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAF 209

Query: 297 QIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 356
             H+   N+ +   +            +        D L K+ E +    +  L +V+  
Sbjct: 210 N-HMQTGNVREITNV-----RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN 263

Query: 357 SKRVEGIISLSDVFRFL 373
            + ++GII+  DV ++ 
Sbjct: 264 LR-IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAK 291
           V  +  A  +    + PT ++  AL  + +     +P+V+  N+ ++ I +  DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 292 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 351
                  +      H+   L     P      +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 352 IVEAGSKRVEGIISLSDVFRFLL 374
           IV   ++ +  +I+  DV R LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 87.9 bits (218), Expect = 8e-20
 Identities = 33/321 (10%), Positives = 94/321 (29%), Gaps = 62/321 (19%)

Query: 57  SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 116
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 117 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 176
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 177 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 236
           ++P++          + + + +  + L       +                        +
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PV 158

Query: 237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAY 295
                     +     L  A+ L+++     +P++DD++ ++ I +  +    LAK    
Sbjct: 159 KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 218

Query: 296 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 355
                    + + +        +L               +++    +    +  L+I+  
Sbjct: 219 LDPDYFYGKVVKDV-----MVTNL-------VTIDELASVNRAAAEMIVKRIGSLLILNK 266

Query: 356 GSKRVEGIISLSDVFRFLLGV 376
            +  + GII+  D+   L  +
Sbjct: 267 DNT-IRGIITERDLLIALHHI 286

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 299
                +    +L +A   + + D+ ++PI  D+D L  + +  DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 300 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 359
             E+       +  +A                   + +++  +    VRR+ ++     R
Sbjct: 76  AGELARDSIYYVDANA------------------SIQEMLNVMEEHQVRRVPVISEH--R 115

Query: 360 VEGIISLSDVFRFL 373
           + GI++ +D+ R L
Sbjct: 116 LVGIVTEADIARHL 129

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 56.9 bits (137), Expect = 5e-10
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIH 299
                L     L   + ++   DV+  P+V+  +S  L+ I  R+ +    + +  ++  
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 300 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 358
             +  +   L  G    P          + L S+  LH+         ++ L +   G  
Sbjct: 81  GHQQCLQDILARGCPTEPV--------TLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-- 130

Query: 359 RVEGIISLSDVFRFLLGV 376
           R  G +S  ++ + +  +
Sbjct: 131 RAVGCVSWVEMKKAISNL 148

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 56.1 bits (136), Expect = 6e-10
 Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHL 300
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI   +        I +
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 74

Query: 301 DE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 358
           +  M            N           +    + PL +V+ ++A   ++ ++I E G  
Sbjct: 75  ERIMT----------RNL----------ITANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 359 RVEGIISLSDVFRFLL 374
           ++ GI +LSD+     
Sbjct: 113 KIVGIFTLSDLLEASR 128

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE-M 303
           +    ++  A+ ++ +  +  + + DDN + + + S   I    + ++K   ++ +   M
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 81

Query: 304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 363
                               +          +  V   L+  G+ R  +V+    RV GI
Sbjct: 82  R-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGI 121

Query: 364 ISLSDVFRFL 373
           ++L+D+ R+L
Sbjct: 122 VTLTDLSRYL 131

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 210
                     ++ +    + +N +  + +    G   G    +L   S   I+K      
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG----LL---SERSIIKRFIPRN 69

Query: 211 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 270
           K           P+  +              +P   ++    +    A L +  +    +
Sbjct: 70  KKPDE------VPIRLVM--R----------KPIPKVKSDYDVKDVAAYLSENGLERCAV 111

Query: 271 VDDNDSLLDIYSRSDIT-ALAKDKAYAQIH 299
           VDD   ++ I + +D++  L++      + 
Sbjct: 112 VDDPGRVVGIVTLTDLSRYLSRASITDILL 141

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT- 287
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 288 -ALAKDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANP 345
               +  A  Q  +   M            N            C  +    ++ME +   
Sbjct: 82  AVAGQGAASLQQSVSVAM----------TKNV---------VRCQHNSTTDQLMEIMTGG 122

Query: 346 GVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
             R + + E G  R+ GIIS+ DV +  +
Sbjct: 123 RFRHVPVEENG--RLAGIISIGDVVKARI 149

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 20/132 (15%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
             + +     S   A   L  +  +  P++D     L +   S +    K     +  L 
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLG 71

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 361
           E  +                           + L   +  +A      + + +    R E
Sbjct: 72  EELLETVRSYRPG------------------EQLFDNLISVAAAKCSVVPLADE-DGRYE 112

Query: 362 GIISLSDVFRFL 373
           G++S   +  FL
Sbjct: 113 GVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 220
            S  + A ++  +  A  P++      G       +  LS +L+             P +
Sbjct: 22  GSTADAARRLAASGCACAPVLDGERYLG-------MVHLSRLLE--------GRKGWPTV 66

Query: 221 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 280
           ++ +    L                  RP   L   L  +  A  S +P+ D++     +
Sbjct: 67  KEKLGEELL------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV 114

Query: 281 YSRSDI-TALAK 291
            SR  I   LA+
Sbjct: 115 VSRKRILGFLAE 126

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 306
           ++P+ S+  AL LLV+  V+ +P++DDN +L+ + S  D+  LA D    +   D     
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDL--LALDSISGRSQNDTNLFP 76

Query: 307 QALQLGQDANPSLGFNGQRCQMCLR------------SDPLHKVMERLANPGVRRLVIVE 354
                 +  N       +     +             S  L      L     RRL +V+
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD 136

Query: 355 AGSKRVEGIISLSDVFRFLL 374
               ++ GI++  +V R  L
Sbjct: 137 -ADGKLIGILTRGNVVRAAL 155

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDE-MN 304
           +    S+  A+  +   DV ++ +VD +  L+ + SR D+  A    +    + +   M 
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 305 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK--RVEG 362
                       P++         C R D +  + + L    +  L +++   K   V G
Sbjct: 89  ----------RMPNITV-------CRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 363 IISLSDVFRFLL 374
            ++ +++ + L+
Sbjct: 132 RVTKTNMTKILV 143

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDIT-ALAK 291
           R  E   RP   L  TA++      L +  V    +   D+    + + S  DI  A+A+
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 292 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 351
                   +   N           +P            L +DP+H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN-----------SP---------ITVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 352 IVEAGSKRVEGIISLSDVFRFLLGV 376
           +V   +  + G++S+ D+      +
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAIL 129

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALA 290
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D + L+ I +  D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 291 KDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR 349
            DK      + E M                            ++     M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIM----------TRQV---------AYVDLNNTNEDCMALITEMRVRH 107

Query: 350 LVIVEAGSKRVEGIISLSDVFRFLL 374
           L +++ G  +V G++S+ D+ +  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 21/143 (14%), Positives = 57/143 (39%), Gaps = 25/143 (17%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKD 292
           +    +GR    +     +  A+ L+ +  + ++ +VD +D +  I +  D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 293 KAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 351
           ++     ++E M           A           +    S    + M  +    +R L 
Sbjct: 73  RSSKATRVEEIM----------TAKV---------RYVEPSQSTDECMALMTEHRMRHLP 113

Query: 352 IVEAGSKRVEGIISLSDVFRFLL 374
           +++ G  ++ G+IS+ D+ + ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 11/140 (7%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 306
           +     +   +  +++  V+    V  ++ L+ +     +  ++    +  I  +E+   
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 88

Query: 307 QALQLGQD-----------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 355
              +L               +                 PL + ++ + +  ++ + +V+ 
Sbjct: 89  SMKRLIAKNASEIMLDPVYVHM--------------DTPLEEALKLMIDNNIQEMPVVD- 133

Query: 356 GSKRVEGIISLSDVFRFLLG 375
               + G ++  ++   L  
Sbjct: 134 EKGEIVGDLNSLEILLALWK 153

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 210
                      ++E+  +IL++ V     +       G    ++    +  +LK    HF
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG----MI---PVMHLLKVSGFHF 76

Query: 211 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 270
                   +++  +  +          E    P   +     L  AL L++  ++  +P+
Sbjct: 77  FGFIPKEELIRSSMKRLIAKN----ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 271 VDDNDSLLDIYSRSDIT-ALAKDK 293
           VD+   ++   +  +I  AL K +
Sbjct: 132 VDEKGEIVGDLNSLEILLALWKGR 155

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 293
            + E        +   A L     ++ + ++ S+ +VD  +  + I +  DI  A+ K K
Sbjct: 5   IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGK 63

Query: 294 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVI 352
           +      + M           A+           + +R D P+   +  +    +R L +
Sbjct: 64  SLETKAEEFMT----------ASL----------ITIREDSPITGALALMRQFNIRHLPV 103

Query: 353 VEAGSKRVEGIISLSDVFRFL 373
           V+     ++GIIS+ D+ R +
Sbjct: 104 VD-DKGNLKGIISIRDITRAI 123

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 39/142 (27%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             ++       L ++A  + +  + +V ++    P G    I+   +  DI+K I +   
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG----II---TERDIVKAIGKGKS 64

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM------LRPTASLGSALALLVQADV 265
                   L+                        M      +R  + +  ALAL+ Q ++
Sbjct: 65  --------LETKAEEF------------------MTASLITIREDSPITGALALMRQFNI 98

Query: 266 SSIPIVDDNDSLLDIYSRSDIT 287
             +P+VDD  +L  I S  DIT
Sbjct: 99  RHLPVVDDKGNLKGIISIRDIT 120

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 39/141 (27%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDE--- 302
            +    +  A   +++  +SS+P++DD + ++ I + +DI   L +DK   +  + +   
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT 80

Query: 303 ---------MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV 353
                     +I +A++                 M +                + +L +V
Sbjct: 81  KDVITIHEDASILEAIKK----------------MDISGKKEEI---------INQLPVV 115

Query: 354 EAGSKRVEGIISLSDVFRFLL 374
           +  + ++ GIIS  D+ R + 
Sbjct: 116 D-KNNKLVGIISDGDIIRTIS 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 306
           L  T +L  A  L+   D+  +PIVD N  LL I S+ D   L   +  +     + +  
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRD---LLAAQESSLQRSAQGDSL 74

Query: 307 QALQLGQD--------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 358
                  +          P                 L +    +    +  L +V     
Sbjct: 75  AFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVAKD-- 118

Query: 359 RVEGIISLSDVFRFLLGV 376
            + GII+ SD     + +
Sbjct: 119 VLVGIITDSDFVTIAINL 136

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 246 MLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIHLDEM 303
           + + + ++     ++ +   S  P+V   +S  L+    R D+    ++    Q  +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 304 NIHQALQLGQDANPSLGFNGQRCQMCLRS-------DPLHKVMERLANPGVRRLVIVEAG 356
           +I    +      P      +   +   S        P+  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 357 SKRVEGIISLSDVFRFLLGV 376
             R+ GII+  DV + +  +
Sbjct: 149 --RLLGIITKKDVLKHIAQM 166

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 305
           +  TASL   L   V+    S  +V +    + I +  D+  A+A+    A++ + E+  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKVWEVME 72

Query: 306 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 365
              + +   A                   + +  E++    V RL++ E     + G+IS
Sbjct: 73  RDLVTISPRA------------------TIKEAAEKMVKNVVWRLLVEEDD--EIIGVIS 112

Query: 366 LSDVFRFLLG 375
            +D+ R  + 
Sbjct: 113 ATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 41.3 bits (98), Expect = 6e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +       SL++V    ++N   +  ++      G    I+   +  D+L+ I     
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----IV---TTWDVLEAIAEGDD 61

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
            +                     ++ E   R    + P A++  A   +V+  V  + + 
Sbjct: 62  LAEV-------------------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 272 DDNDSLLDIYSRSDIT-ALAKDK 293
           +D D ++ + S +DI  A    +
Sbjct: 103 ED-DEIIGVISATDILRAKMAKR 124

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 306
           +  +A++   L  + Q   +   + D       + ++ D+     D        +++++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL----LDLDLDSSVFNKVSLP 81

Query: 307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 366
                                     D +   +          L +V+    R++G +SL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 367 SDVFRFLL 374
            D    L+
Sbjct: 122 HDFLEALI 129

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM-- 303
                S+  A  +L++ +++ +PIVD++  L+ I +  DI  ALA++K   +   + M  
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIE---EIMTR 70

Query: 304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 363
           N+  A +                      +P+  V  +++   +  + +V+   +RV GI
Sbjct: 71  NVITAHE---------------------DEPVDHVAIKMSKYNISGVPVVD-DYRRVVGI 108

Query: 364 ISLSDVFRFLLG 375
           ++  D+ R   G
Sbjct: 109 VTSEDISRLFGG 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 53/388 (13%), Positives = 109/388 (28%), Gaps = 112/388 (28%)

Query: 33  DLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG 92
           D +  +D   S LS   +  ++     V+           F  L  +   MV        
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------LFWTLLSKQEEMVQ------- 80

Query: 93  RFVGVLSALDFILILRELGT--NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPC 150
           +FV  +  +++  ++  + T     ++            +     Q+  K  +       
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNV------- 131

Query: 151 PRPLVQAGPYDSLKEVALKILQ--NKVATVPIIHSTGPAGS---------CQ-------- 191
            R      PY  L++ AL  L+    V    +I   G  GS         C         
Sbjct: 132 SRL----QPYLKLRQ-ALLELRPAKNV----LID--GVLGSGKTWVALDVCLSYKVQCKM 180

Query: 192 --EILYL--------ASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG 241
             +I +L         ++ ++L+ +      + +S        S+I+L     RI     
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHSSNIKL-----RIHSIQA 232

Query: 242 RP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR-------SDITALAKD 292
                   +P  +      LLV  +V +    +      ++  +         +T     
Sbjct: 233 ELRRLLKSKPYEN-----CLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSA 283

Query: 293 KAYAQIHLDEMNI----HQALQL-----GQDAN--PSLGFNGQRCQMCLRSDPLHKVM-- 339
                I LD  ++     +   L            P         ++   + P    +  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--------EVLTTN-PRRLSIIA 334

Query: 340 ERLANPGVRRLVIVEAGSKRVEGIISLS 367
           E + +              ++  II  S
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESS 362

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 47/355 (13%), Positives = 91/355 (25%), Gaps = 99/355 (27%)

Query: 15  EVDDVVMRPEGFAQYSEADLQLSRDRISSFLS--THTVYELLPDSGKVTALDVNLA-VKQ 71
           E+D ++M  +         +  +     + LS     V + + +      L +N   +  
Sbjct: 50  EIDHIIMSKD--------AVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMS 96

Query: 72  AFHVLYEQ-GLPMV-------PLWDD---FKGRFVGVLSALDFILILRE----------- 109
                  Q  +           L++D   F    V   S L   L LR+           
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNV 153

Query: 110 -----LGTNGSNLTEEELETHTISA-------W-KVGK---------LQLNLKRQMDGNG 147
                LG+  + +  +   ++ +         W  +           +   L  Q+D N 
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 148 -----RPCPRPLVQAGPYDSLKEV--------ALKILQNKVATVPIIHSTGPAGSCQEIL 194
                      L        L+ +         L +L N V      ++     SC+ IL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFN--LSCK-IL 269

Query: 195 YL---ASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 251
                  ++D L                L        L  ++             L    
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREV 322

Query: 252 SLGSALALLVQADVSSIP-IVDDNDSLLDIYSRSDITALAK--DKAYAQIHLDEM 303
              +   L      S I   + D  +  D +   +   L    + +   +   E 
Sbjct: 323 LTTNPRRL------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
           R   +++   +L  A  L+++ D   + +VD     + I +  DI    +          
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII---RRYFAKSEKYK 124

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 361
            + I    Q                 +     PL   ++ L       L +V++    + 
Sbjct: 125 GVEIEPYYQR-------------YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGN-LV 170

Query: 362 GIISLSDVFR 371
           GI+  +D+ R
Sbjct: 171 GIVDETDLLR 180

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 42/238 (17%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
           R +      D+LK+ A  +L+     V ++ S G      + + + ++ DI++      +
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------KPVGILTVGDIIRRYFAKSE 121

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                                   I     R  +++     L +AL  L+ ++  ++P+V
Sbjct: 122 KYKGV------------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV 163

Query: 272 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 331
           D   +L+ I   +D+  L   +    +   E+      +   +++P+L F     Q+  +
Sbjct: 164 DSEGNLVGIVDETDL--LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 332 ---------------SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
                             +H+V  ++A   + +L ++      + G+I   D+ + L+
Sbjct: 222 PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 60  VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 119
                 N  +K+A  ++ E     V + D  KG+ VG+L+  D I            +  
Sbjct: 71  PVV-KENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEI 128

Query: 120 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 179
           E                               R +        LK     +L +    +P
Sbjct: 129 EPYYQ---------------------------RYVSIVWEGTPLKAALKALLLSNSMALP 161

Query: 180 II----HSTG-------------PAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 222
           ++    +  G                     L  +S  + +             L +  +
Sbjct: 162 VVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 223 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 282
           PV+ I                     P  ++      + +  +  +P++     L+ +  
Sbjct: 222 PVAEI-----------MTRDVIVA-TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 283 RSDIT-ALAKDKA 294
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 306
           +   A+   AL L  +  V S P+V+    L+ I S   I  +  D    +  L  +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPD----EEQLAMLVKR 68

Query: 307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 366
               + ++                  D L K  + +     RR+V+V+    +  GI+++
Sbjct: 69  DVPVVKEN------------------DTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTV 109

Query: 367 SDVFRFLL 374
            D+ R   
Sbjct: 110 GDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 59  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 117
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 118 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 176
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 177 TVPIIHSTG-PAGSCQEILYLASLSDILKCICRH 209
            +P+I   G   G    ++      D+LK + + 
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLKVLVKS 280

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 305
           ++    L  AL +LV++  S+IP++D    L  + S + I   +   +      L+EM +
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKV 89

Query: 306 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 365
            Q +   +   P L             D   K +E   +      +         EGI++
Sbjct: 90  EQVM---KQDIPVLKLE----------DSFAKALEMTID---HPFICAVNEDGYFEGILT 133

Query: 366 LSDVFRFL 373
              + + L
Sbjct: 134 RRAILKLL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 49  TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 108
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 109 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 168
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 169 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 210
             + +    +  ++  G          + +   ILK + +  
Sbjct: 112 MTIDHPF--ICAVNEDG------YFEGILTRRAILKLLNKKV 145

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 210
             +    P + L    L + +   + +P++ ++    G    ++   S++ ++  I    
Sbjct: 21  DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHG----LI---SMTMMMDAILGLE 73

Query: 211 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 270
           +     L  +              ++ E   R    LR   SL  A+ L+V      + +
Sbjct: 74  RIEFERLETM--------------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 271 VDDNDSLLDIYSRSDI 286
            +D+     I++R ++
Sbjct: 118 ENDDGYFAGIFTRREV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 306
           ++P   L  AL +L +   S+IP++D +  L  + S + +  +       +I  + +   
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAILGLERIEFERLETM 83

Query: 307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 366
           +  ++     P L  +          D L K +  + N      V VE       GI + 
Sbjct: 84  KVEEVMNRNIPRLRLD----------DSLMKAVGLIVN---HPFVCVENDDGYFAGIFTR 130

Query: 367 SDVFRFL 373
            +V + L
Sbjct: 131 REVLKQL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 245 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM 303
           A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      LD++
Sbjct: 27  AHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 363
            + + +       P L  N          DP+ K    + N      V VE   +  EGI
Sbjct: 87  TVEEVM---LTDIPRLHIN----------DPIMKGFGMVIN---NGFVCVENDEQVFEGI 130

Query: 364 ISLSDVFRFL 373
            +   V + L
Sbjct: 131 FTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 159 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 218
             ++L+   L + +     +P++  +        +  L   + I+  I    +     L 
Sbjct: 31  VGNNLEHALLVLTKTGYTAIPVLDPSY------RLHGLIGTNMIMNSIFGLERIEFEKLD 84

Query: 219 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 278
            +               + E        L     +     +++  +   + + +D     
Sbjct: 85  QI--------------TVEEVMLTDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFE 128

Query: 279 DIYSRSDI 286
            I++R  +
Sbjct: 129 GIFTRRVV 136

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 37/262 (14%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 47  THTVYELLPD--SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 104
           +H V   + D    K+  L   +++K A++++ ++ L  +P+ D      +G+LS  +  
Sbjct: 2   SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNIT 60

Query: 105 LILRELGTNGSNLTEEELETHTISAWK-------------VGKLQLNLKRQMDGNGRPCP 151
               ++  +           + +                  GK+ +   +          
Sbjct: 61  ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +  AG    ++   ++        V ++  TG     +EI+ LA  ++I      H  
Sbjct: 121 GDIAIAGDRAEIQAELIE------LKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDS 174

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
            ++S L +   PV  +                   +     +      + +   S+ P++
Sbjct: 175 FTASRLIVQSLPVDYVM-----------TKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223

Query: 272 DDNDSLLDIYSRSDITALAKDK 293
           D+N+ ++   +R  + +  K K
Sbjct: 224 DENNKVVGSIARFHLISTHKKK 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.93
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.88
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.88
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.87
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.86
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.82
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.82
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.81
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.8
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.8
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.8
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.79
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.79
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.78
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.78
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.78
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.78
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.78
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.78
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.78
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.77
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.77
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.77
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.77
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.77
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.77
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.77
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.77
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.77
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.76
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.76
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.75
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.75
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.75
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.75
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.74
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.74
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.73
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.73
4esy_A	170	CBS domain containing membrane protein; structural	99.73
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.72
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.72
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.72
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.71
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.7
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.7
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.7
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.69
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.69
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.69
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.68
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.68
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.67
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.66
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.65
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.65
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.65
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.64
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.64
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.64
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.64
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.64
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.64
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.63
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.63
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.63
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.63
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.63
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.62
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.62
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.62
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.62
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.61
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.61
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.61
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.61
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.61
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.61
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.6
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.6
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.59
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.58
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.57
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.57
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.57
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.56
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.56
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.54
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.54
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.54
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.53
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.52
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.5
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.43
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.41
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.41
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.41
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.39
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.38
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.35
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.32
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.31
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.3
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.27
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.23
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.19
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.19
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.18
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.17
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.1
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.01
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.99
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.81
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.8
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.63

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=1.9e-43  Score=333.31  Aligned_cols=310  Identities=25%  Similarity=0.442  Sum_probs=248.0

Q ss_pred             CCHHHHHHHHHHHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHH
Q 017163           29 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  108 (376)
Q Consensus        29 ~~~~~~~~~~~~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~  108 (376)
                      .-+++.....+++.+||+.++|||+||.+.++++++.+.|+.+|++.|.+++++++||||++.++++|++|..|++.++.
T Consensus        11 ~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~   90 (323)
T 3t4n_C           11 KVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQ   90 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHH
Confidence            44566667889999999999999999999999999999999999999999999999999988778999999999999887


Q ss_pred             HhccCCCCCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCC
Q 017163          109 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG  188 (376)
Q Consensus       109 ~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g  188 (376)
                      +++..+..  .+.++.+....|++.....+          .|.++++++.+++++.+|++.|.+++++++||++++...+
T Consensus        91 ~~~~~~~~--~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~  158 (323)
T 3t4n_C           91 YYFSNPDK--FELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH  158 (323)
T ss_dssp             HHHHCGGG--GGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC
T ss_pred             HHHcCcch--hHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC
Confidence            76553321  23445555556666554433          6788999999999999999999999999999998732222


Q ss_pred             CcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEE
Q 017163          189 SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSI  268 (376)
Q Consensus       189 ~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~l  268 (376)
                       .++++|++|.+|+++++..+...    ......+++++.++         |.++++++.+++++.+|++.|.+++++++
T Consensus       159 -~~~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~  224 (323)
T 3t4n_C          159 -REIVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSV  224 (323)
T ss_dssp             -CEEEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEE
T ss_pred             -ccceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEE
Confidence             11299999999999998765433    12233344333211         66789999999999999999999999999


Q ss_pred             EEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCc
Q 017163          269 PIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR  348 (376)
Q Consensus       269 pVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~  348 (376)
                      ||+|++|+++|++|.+|+++.+..+.+...   +.++.+++.....       ...++.+|.+++++.+|+++|.+++++
T Consensus       225 pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~  294 (323)
T 3t4n_C          225 PIIDENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARVH  294 (323)
T ss_dssp             EEECTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCCC
T ss_pred             EEECCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999998775544333   4678885432110       002689999999999999999999999


Q ss_pred             EEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          349 RLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       349 ~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ++|||| ++|+++|+||.+||++++++
T Consensus       295 ~l~Vvd-~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          295 RFFVVD-DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             EEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             EEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            999999 47999999999999999975

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=5.8e-37  Score=290.29  Aligned_cols=307  Identities=22%  Similarity=0.435  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHh
Q 017163           31 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  110 (376)
Q Consensus        31 ~~~~~~~~~~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~  110 (376)
                      +.+.....+.+.+||+..+++|+|+.+.++++++.++|+.+|++.|.+++++++||||++.++++|+++..|++.++...
T Consensus         5 ~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~   84 (334)
T 2qrd_G            5 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY   84 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHH
Confidence            34566688999999999999999999999999999999999999999999999999998777899999999999877654


Q ss_pred             ccCCCCC-CHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCc--eEeCCCCCHHHHHHHHHhCCCceeEEEecCCCC
Q 017163          111 GTNGSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPA  187 (376)
Q Consensus       111 ~~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~  187 (376)
                      ....... ..+.+....+..|.+....            +|..++  +++.+++++.+|++.|.+++++++||+|++  .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~l~~------------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~  150 (334)
T 2qrd_G           85 YQSSSFPEAIAEIDKFRLLGLREVERK------------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--G  150 (334)
T ss_dssp             HHHCSCGGGGGGGGSCBHHHHHHHHHH------------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--T
T ss_pred             hhccCCccHHHHHhhhchhhHHHHHHh------------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--C
Confidence            3210000 0122334455566554432            344555  899999999999999999999999999762  1


Q ss_pred             C-CcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCC
Q 017163          188 G-SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS  266 (376)
Q Consensus       188 g-~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~  266 (376)
                      + ..+.++|++|.+|+++++......    ......+++++         ..+|.+++.++.+++++.+|++.|.+++++
T Consensus       151 ~~~~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~  217 (334)
T 2qrd_G          151 ETGSEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNIS  217 (334)
T ss_dssp             TTTEEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCS
T ss_pred             CcCccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCc
Confidence            2 001299999999999988654221    01112223222         113778899999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCC
Q 017163          267 SIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPG  346 (376)
Q Consensus       267 ~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~  346 (376)
                      ++||+|++|+++|++|.+|++..+..+.+...   +.++.+++.....   .  +  .++.+|.+++++.+|++.|.+++
T Consensus       218 ~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~---~--~--~~~~~v~~~~~l~~~~~~m~~~~  287 (334)
T 2qrd_G          218 AVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLKRPA---N--F--DGVHTCRATDRLDGIFDAIKHSR  287 (334)
T ss_dssp             EEEEECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTTCCT---T--C--CCCCEECTTCBHHHHHHHHHHSC
T ss_pred             EEEEEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhcccc---c--C--CCCEEECCCCcHHHHHHHHHHcC
Confidence            99999989999999999999987765443222   3677774321000   0  0  37889999999999999999999


Q ss_pred             CcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          347 VRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       347 ~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ++++|||| ++|+++|+||.+||++++..
T Consensus       288 ~~~l~Vvd-~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          288 VHRLFVVD-ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CCEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             CCEEEEEC-CCCeEEEEEeHHHHHHHHHh
Confidence            99999999 47999999999999999865

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=1.3e-36  Score=287.52  Aligned_cols=300  Identities=31%  Similarity=0.544  Sum_probs=239.5

Q ss_pred             HHHHHHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCC
Q 017163           36 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  115 (376)
Q Consensus        36 ~~~~~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~  115 (376)
                      ..++.+..||+..+++|+|+.+.++++++.+.|+.+|++.|.+++++++||||.+.++++|++|..|++..+......+.
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~  102 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL  102 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence            45778999999999999999999999999999999999999999999999999887789999999999987765431110


Q ss_pred             CCCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEE
Q 017163          116 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  195 (376)
Q Consensus       116 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~g  195 (376)
                       ....++....+..|....            +.+|.++++++.+++++.+|++.|.+++++++||+|+  ++|   +++|
T Consensus       103 -~~~~~l~~~~~~~~~~~~------------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~G  164 (330)
T 2v8q_E          103 -VQIYELEEHKIETWREVY------------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLY  164 (330)
T ss_dssp             -TTCCCGGGCBHHHHHHHH------------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEE
T ss_pred             -cchhHHhhccHHHHHHHH------------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEE
Confidence             011223344555554322            2368889999999999999999999999999999963  235   7999


Q ss_pred             eeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccC-CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC
Q 017163          196 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDN  274 (376)
Q Consensus       196 iit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~  274 (376)
                      ++|.+|+++++..+....+. ..+...+++++.+          |. +++.++.+++++.+|++.|.+++++++||+|++
T Consensus       165 ivt~~dl~~~~~~~~~~~~~-~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~  233 (330)
T 2v8q_E          165 ILTHKRILKFLKLFITEFPK-PEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK  233 (330)
T ss_dssp             EECHHHHHHHHHHHSCSSSC-CGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT
T ss_pred             EEcHHHHHHHHHHHhhccCc-hhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence            99999999988765432110 1122334444322          32 578899999999999999999999999999989


Q ss_pred             CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEe
Q 017163          275 DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  354 (376)
Q Consensus       275 g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd  354 (376)
                      |+++|++|.+|++.....+.+...   +.++.+++..+.       .|..++.+|.+++++.+|+++|.+++++++||+|
T Consensus       234 ~~l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  303 (330)
T 2v8q_E          234 GRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  303 (330)
T ss_dssp             SBEEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEEEEEEHHHHHHHHhccccccc---cCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc
Confidence            999999999999986654433222   467888654322       4567899999999999999999999999999999


Q ss_pred             CCCCeEEEEEeHHHHHHHHhc
Q 017163          355 AGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       355 ~~~~~~~GvIs~~Dil~~l~~  375 (376)
                       ++|+++|+||.+||++++..
T Consensus       304 -~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          304 -EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             -TTSBEEEEEEHHHHHHHHHS
T ss_pred             -CCCcEEEEEeHHHHHHHHHh
Confidence             47999999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=3.2e-34  Score=264.18  Aligned_cols=270  Identities=14%  Similarity=0.279  Sum_probs=209.3

Q ss_pred             CccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhHH
Q 017163           49 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  128 (376)
Q Consensus        49 ~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i~  128 (376)
                      ++.+.+.. .++++++.+.|+.+|++.|.+++++++||+|++.++++|++|..|++.++.....      ...+......
T Consensus         4 ~v~~~i~~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQN-KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHER   76 (280)
T ss_dssp             BGGGTSCC-SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTT
T ss_pred             hHHHHhcC-CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhcccc
Confidence            34455554 3799999999999999999999999999999866789999999999976532111      0000000000


Q ss_pred             HHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhh
Q 017163          129 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  208 (376)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~  208 (376)
                      .+..        .....++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++..
T Consensus        77 ~~~~--------~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           77 NFLA--------AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD  142 (280)
T ss_dssp             CHHH--------HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred             chhH--------HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence            0000        0011234578889999999999999999999999999999975   56   89999999999987754


Q ss_pred             hccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          209 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                      ....        .            ..++++|.+++.++.+++++.+|++.|.+++++++||+ ++|+++|++|.+|++.
T Consensus       143 ~~~~--------~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~  201 (280)
T 3kh5_A          143 KIDE--------N------------EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIK  201 (280)
T ss_dssp             GSCT--------T------------CBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHH
T ss_pred             cCCC--------C------------CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHH
Confidence            3211        1            13455688889999999999999999999999999999 6899999999999998


Q ss_pred             HHhccccc-ccc------cccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEE
Q 017163          289 LAKDKAYA-QIH------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE  361 (376)
Q Consensus       289 ~~~~~~~~-~~~------~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~  361 (376)
                      ....+... ...      ..+.++.+             +|.+++.+|.+++++.+|++.|.+++++++||+| ++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~  267 (280)
T 3kh5_A          202 LLGSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIK  267 (280)
T ss_dssp             HHTSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEE
T ss_pred             HHhhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEE
Confidence            76532210 000      01234444             7778899999999999999999999999999999 478999


Q ss_pred             EEEeHHHHHHHHh
Q 017163          362 GIISLSDVFRFLL  374 (376)
Q Consensus       362 GvIs~~Dil~~l~  374 (376)
                      |+||.+||++++.
T Consensus       268 Givt~~dil~~la  280 (280)
T 3kh5_A          268 GIITEKDVLKYFA  280 (280)
T ss_dssp             EEEEHHHHGGGGC
T ss_pred             EEEeHHHHHHhhC
Confidence            9999999998863

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=1.3e-33  Score=262.76  Aligned_cols=264  Identities=10%  Similarity=0.103  Sum_probs=210.3

Q ss_pred             hCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhh
Q 017163           47 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  126 (376)
Q Consensus        47 ~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~  126 (376)
                      ..++.|+|.  .++++++.+.|+.+|++.|.++++.++||+|   ++++|++|..|++..+......          ...
T Consensus        19 ~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~----------~~~   83 (296)
T 3ddj_A           19 GMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD----------SCS   83 (296)
T ss_dssp             CSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CC
T ss_pred             ccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc----------ccc
Confidence            356778884  4799999999999999999999999999999   6799999999999765322110          000


Q ss_pred             HHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHH
Q 017163          127 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  206 (376)
Q Consensus       127 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l  206 (376)
                      ...+...        ....++.+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++
T Consensus        84 ~~~~~~~--------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~  149 (296)
T 3ddj_A           84 QGDLYHI--------STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY  149 (296)
T ss_dssp             HHHHHHH--------HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred             chhhHHH--------hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence            1111110        011234478889999999999999999999999999999975   56   899999999999865


Q ss_pred             hhhccCCCCCccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHH
Q 017163          207 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  286 (376)
Q Consensus       207 ~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di  286 (376)
                      .....         .            ..++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+
T Consensus       150 ~~~~~---------~------------~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          150 KDLDE---------I------------FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             GGSCC---------C------------CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             hcccc---------c------------ccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence            42211         1            23555688889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccc---cccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEE
Q 017163          287 TALAKDKAYAQIH---LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  363 (376)
Q Consensus       287 ~~~~~~~~~~~~~---~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~Gv  363 (376)
                      +..+... +..+.   ..+.++.+             +|..++.+|.+++++.+|++.|.+++++++||+| ++|+++|+
T Consensus       209 ~~~~~~~-~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Gi  273 (296)
T 3ddj_A          209 IKQLAKA-VDKLDPDYFYGKVVKD-------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGI  273 (296)
T ss_dssp             HHHHHHH-HHHTCTHHHHTCBHHH-------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEE
T ss_pred             HHHHHHH-HhhcChhhhcCcCHHH-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEE
Confidence            9876522 11110   01345555             7778899999999999999999999999999999 47999999


Q ss_pred             EeHHHHHHHHhc
Q 017163          364 ISLSDVFRFLLG  375 (376)
Q Consensus       364 Is~~Dil~~l~~  375 (376)
                      ||.+||++++.+
T Consensus       274 it~~Dil~~l~~  285 (296)
T 3ddj_A          274 ITERDLLIALHH  285 (296)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EcHHHHHHHHHH
Confidence            999999999864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=7.4e-31  Score=242.15  Aligned_cols=257  Identities=16%  Similarity=0.230  Sum_probs=179.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhHHHHHHHHHhh
Q 017163           58 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  137 (376)
Q Consensus        58 ~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  137 (376)
                      .++++++.+.|+.+|++.|.++++..+||+|++ ++++|++|..|++..+.       ..        .           
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~-------~~--------~-----------   61 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD-------EE--------Q-----------   61 (282)
T ss_dssp             ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc-------cC--------C-----------
Confidence            468889999999999999999999999999974 67999999999874221       00        0           


Q ss_pred             hcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH-HHhhhccCCCCC
Q 017163          138 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSS  216 (376)
Q Consensus       138 ~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~-~l~~~~~~~~~~  216 (376)
                              ++.+|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++ ++....      
T Consensus        62 --------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~------  121 (282)
T 2yzq_A           62 --------LAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAKSE------  121 (282)
T ss_dssp             ----------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCS------
T ss_pred             --------HHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhccC------
Confidence                    12356677899999999999999999999999999975   46   8999999999998 654310      


Q ss_pred             ccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHH------HHH
Q 017163          217 LPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT------ALA  290 (376)
Q Consensus       217 ~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~------~~~  290 (376)
                       ....            ..++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++      +..
T Consensus       122 -~~~~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~  188 (282)
T 2yzq_A          122 -KYKG------------VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIM  188 (282)
T ss_dssp             -GGGG------------CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--
T ss_pred             -Cccc------------CcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhh
Confidence             0011            234556888899999999999999999999999999999899999999999998      322


Q ss_pred             hccc--ccc-ccc-ccccHHHHHhc--CCCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEE
Q 017163          291 KDKA--YAQ-IHL-DEMNIHQALQL--GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  363 (376)
Q Consensus       291 ~~~~--~~~-~~~-~~~~v~~~l~~--~~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~Gv  363 (376)
                      ....  ... ..+ .......+...  ......+. ++|.+++.+|.+++++.+|+++|.+++++++||+| ++|+++|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGi  267 (282)
T 2yzq_A          189 KSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGL  267 (282)
T ss_dssp             ------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEE
T ss_pred             ccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-CCCCEEEE
Confidence            1000  000 000 00000000000  00011122 28889999999999999999999999999999999 46899999


Q ss_pred             EeHHHHHHHHhc
Q 017163          364 ISLSDVFRFLLG  375 (376)
Q Consensus       364 Is~~Dil~~l~~  375 (376)
                      ||.+||++++..
T Consensus       268 it~~Dil~~~~~  279 (282)
T 2yzq_A          268 IRDFDLLKVLVK  279 (282)
T ss_dssp             EEHHHHGGGGCC
T ss_pred             EeHHHHHHHHHh
Confidence            999999998753

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.93  E-value=1.4e-24  Score=199.66  Aligned_cols=195  Identities=18%  Similarity=0.330  Sum_probs=157.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccc-ccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ-PVSSI  227 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~-~i~~l  227 (376)
                      +|.++++++.+++++.+|+++|.+++++++||+++  ++|   +++|++|.+|+++++......     ..+.. ....+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~--~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNA--GNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECT--TTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEEC--CCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            67889999999999999999999999999999963  346   899999999999977432111     00000 00000


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  307 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~  307 (376)
                       ......+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++........     ..++.+
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE-----NEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT-----TCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC-----CCCHHH
Confidence             11123467788999999999999999999999999999999999999999999999999876543221     124444


Q ss_pred             HHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          308 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       308 ~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                   +|.+++.++.+++++.+|++.|.+++++++||++  +|+++|+||..|+++++.
T Consensus       153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence                         7778899999999999999999999999999996  399999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=3.4e-24  Score=199.09  Aligned_cols=192  Identities=18%  Similarity=0.205  Sum_probs=158.5

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      ++++|.++++++.+++++.+|++.|.+++++++||++     +   +++|++|..||++++......        ....+
T Consensus        22 V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~~~   85 (296)
T 3ddj_A           22 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCSQG   85 (296)
T ss_dssp             GGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CCHH
T ss_pred             HHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------cccch
Confidence            4568888999999999999999999999999999994     4   899999999999977432211        01111


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccH
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNI  305 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v  305 (376)
                      .+ +.....+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++........      ..++
T Consensus        86 ~~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~~------~~~v  158 (296)
T 3ddj_A           86 DL-YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLDE------IFPV  158 (296)
T ss_dssp             HH-HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSCC------CCBH
T ss_pred             hh-HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcccc------cccH
Confidence            11 0011235677798899999999999999999999999999999999999999999999875542211      3577


Q ss_pred             HHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          306 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       306 ~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                      .+             +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus       159 ~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          159 KV-------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HH-------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             HH-------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence            77             6777899999999999999999999999999999 4799999999999999874

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.88  E-value=1.2e-22  Score=191.71  Aligned_cols=206  Identities=17%  Similarity=0.249  Sum_probs=160.0

Q ss_pred             CCC--CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          148 RPC--PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       148 ~~~--~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      ++|  ..+++++++++++.+|++.|.+++++++||+++  +.+   +++|++|.+|++.++...+....    .....+.
T Consensus        39 dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~--~~~---~~vGivt~~Dll~~l~~~~~~~~----~~~~~l~  109 (330)
T 2v8q_E           39 DLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSAL----VQIYELE  109 (330)
T ss_dssp             GGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHT----TTCCCGG
T ss_pred             hhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHhccc----cchhHHh
Confidence            367  678999999999999999999999999999976  225   79999999999998765431100    0011122


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhccccc--cccccc
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYA--QIHLDE  302 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~--~~~~~~  302 (376)
                      ...+..|...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++.....+...  ...+..
T Consensus       110 ~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  189 (330)
T 2v8q_E          110 EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMS  189 (330)
T ss_dssp             GCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGG
T ss_pred             hccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhc
Confidence            233334444566789999999999999999999999999999999998 89999999999999866532111  000112


Q ss_pred             ccHHHHHhcCCCCCCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          303 MNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       303 ~~v~~~l~~~~~~~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                      .++.+.           .+|. .++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.
T Consensus       190 ~~v~~~-----------~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          190 KSLEEL-----------QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             SBHHHH-----------TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred             CCHHHh-----------cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence            344441           0344 6788999999999999999999999999999 4799999999999998764

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.88  E-value=2.8e-22  Score=188.41  Aligned_cols=200  Identities=17%  Similarity=0.266  Sum_probs=152.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      ..+++.++.++++.+|++.|.+++++++||+++  +.+   +++|++|..|++.++...+.....     ...+......
T Consensus        39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~--~~~---~lvGilt~~Dl~~~l~~~~~~~~~-----~~~l~~~~~~  108 (323)
T 3t4n_C           39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDS--KTS---RFAGLLTTTDFINVIQYYFSNPDK-----FELVDKLQLD  108 (323)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHCGGG-----GGGGGGCBHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHcCcch-----hHHHHHHHHH
Confidence            356889999999999999999999999999975  345   899999999999987644322110     0011111111


Q ss_pred             ccc--cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCc-----EEEEEeHHHHHHHHhcccccccccccc
Q 017163          231 TWV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDEM  303 (376)
Q Consensus       231 ~~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~-----lvGiis~~Di~~~~~~~~~~~~~~~~~  303 (376)
                      .+.  .++.++|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|++..+...... ..+.+.
T Consensus       109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~  187 (323)
T 3t4n_C          109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI  187 (323)
T ss_dssp             HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred             HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence            111  1234556788999999999999999999999999999998775     99999999999866532211 111134


Q ss_pred             cHHHHHhcCCCCCCCccc---CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          304 NIHQALQLGQDANPSLGF---NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       304 ~v~~~l~~~~~~~~~~~i---m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ++.+             +   |..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.+
T Consensus       188 ~v~~-------------~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~~  248 (323)
T 3t4n_C          188 PIGD-------------LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKG  248 (323)
T ss_dssp             BGGG-------------TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHHT
T ss_pred             cHHH-------------cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHhh
Confidence            5555             4   778899999999999999999999999999999 47999999999999998753

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.87  E-value=4.4e-22  Score=183.25  Aligned_cols=173  Identities=16%  Similarity=0.230  Sum_probs=130.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++.+++++.+|+++|.+++++++||+++   +|   +++|+++..|+++.+.             .       
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~---~~~Giv~~~dl~~~~~-------------~-------   59 (282)
T 2yzq_A            6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------E-------   59 (282)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhhhc-------------c-------
Confidence            46678899999999999999999999999999975   56   8999999999986321             1       


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHH
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQ  307 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~  307 (376)
                           ..++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+.+ .+..+...    .+.++.+
T Consensus        60 -----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~----~~~~v~~  130 (282)
T 2yzq_A           60 -----EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKY----KGVEIEP  130 (282)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGG----GGCBSTT
T ss_pred             -----CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCc----ccCcHHH
Confidence                 1344557778899999999999999999999999999998899999999999988 55432110    0233333


Q ss_pred             HHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHH
Q 017163          308 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  370 (376)
Q Consensus       308 ~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil  370 (376)
                                   +|..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|++
T Consensus       131 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 -------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL  179 (282)
T ss_dssp             -------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred             -------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence                         7777899999999999999999999999999999 469999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.86  E-value=2.2e-21  Score=183.21  Aligned_cols=208  Identities=14%  Similarity=0.148  Sum_probs=152.8

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.  .+++++++++++.+|++.|.+++++++||++.  +.+   +++|+++.+|++.++......... .. ....+..
T Consensus        27 im~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~-~~~~~~~   99 (334)
T 2qrd_G           27 VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF-PE-AIAEIDK   99 (334)
T ss_dssp             GSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC-GG-GGGGGGS
T ss_pred             hCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC-cc-HHHHHhh
Confidence            564  35889999999999999999999999999975  236   899999999999877543211000 00 0001111


Q ss_pred             ccccccccccccccCCCc--eEecCCCCHHHHHHHHHhCCCCEEEEECCCCc-----EEEEEeHHHHHHHHhcccccccc
Q 017163          227 IQLGTWVPRIGEANGRPF--AMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIH  299 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~--~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~-----lvGiis~~Di~~~~~~~~~~~~~  299 (376)
                      .++..+....+++|.+++  +++.+++++.+|++.|.+++++++||+|++|.     ++|++|.+|++.....+... ..
T Consensus       100 ~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~-~~  178 (334)
T 2qrd_G          100 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE-TA  178 (334)
T ss_dssp             CBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG-GG
T ss_pred             hchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc-hh
Confidence            111112112234466666  89999999999999999999999999997654     99999999999866532211 11


Q ss_pred             cccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          300 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       300 ~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      +...++.+.         . .+|..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++.+
T Consensus       179 ~~~~~v~~l---------~-~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~~  243 (334)
T 2qrd_G          179 MLRVPLNQM---------T-IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQD  243 (334)
T ss_dssp             GCCCBGGGS---------S-CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHTT
T ss_pred             hhhCcHHHh---------C-CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhhc
Confidence            112344430         0 03778899999999999999999999999999999 47999999999999998753

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.86  E-value=5.8e-22  Score=169.09  Aligned_cols=137  Identities=17%  Similarity=0.284  Sum_probs=105.5

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHH
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQA  308 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~------~~~~~~~v~~~  308 (376)
                      +|+++|+++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++.........      ...........
T Consensus        19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 4esy_A           19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL   98 (170)
T ss_dssp             BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence            467779999999999999999999999999999999999999999999999976432211100      00000000010


Q ss_pred             HhcCCCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          309 LQLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       309 l~~~~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ....  ...+. .+|++++++|++++++.+|++.|.+++++++||+|+  |+++|+||.+||+++|+.
T Consensus        99 ~~~~--~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           99 FETG--RKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD--GVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHH--TTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHTTTSCC
T ss_pred             hccc--cccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence            0000  01111 289999999999999999999999999999999994  999999999999998864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.82  E-value=4.4e-20  Score=155.25  Aligned_cols=123  Identities=18%  Similarity=0.257  Sum_probs=101.5

Q ss_pred             cccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 017163          236 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       236 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~  313 (376)
                      ++++|.  .+++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........+.+.++.+      
T Consensus        17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~------   90 (156)
T 3k6e_A           17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH------   90 (156)
T ss_dssp             GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG------
T ss_pred             HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH------
Confidence            344464  478999999999999999999999999999999999999999999986654333222122344444      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                             +|.+++.++.+++++.+|++.|.+++  .+|||| ++|+++|+||.+||++++.
T Consensus        91 -------im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd-~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           91 -------MTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD-AEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             -------TCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -------hhcCCceecccccHHHHHHHHHHHcC--CeEEEe-cCCEEEEEEEHHHHHHHHH
Confidence                   88889999999999999999999876  499999 5799999999999999884

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.82  E-value=1.4e-19  Score=150.50  Aligned_cols=120  Identities=16%  Similarity=0.297  Sum_probs=106.6

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.       +.++.+    
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   92 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----   92 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence            56777887  89999999999999999999999999999987 89999999999998654332       245555    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  376 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~  376 (376)
                               +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++.
T Consensus        93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHHT
T ss_pred             ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhCc
Confidence                     77 7899999999999999999999999999999 579999999999999999863

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.81  E-value=1.6e-19  Score=146.75  Aligned_cols=121  Identities=15%  Similarity=0.263  Sum_probs=105.9

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  ..++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+..      +.++.+    
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~------~~~v~~----   76 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSG------QKQLGA----   76 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTT------TSBHHH----
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCC------cCCHHH----
Confidence            4667787  457799999999999999999999999999987 999999999999987654321      356777    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhcC
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  376 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~~  376 (376)
                               +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++.
T Consensus        77 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A           77 ---------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             ---------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHTC
T ss_pred             ---------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcCC
Confidence                     66 4688999999999999999999999999999 579999999999999999873

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.80  E-value=1e-19  Score=147.36  Aligned_cols=120  Identities=13%  Similarity=0.369  Sum_probs=102.6

Q ss_pred             ccccccCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+.  ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.      .+.++.+    
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~----   73 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDK----   73 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHH----
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHH----
Confidence            456678744  8999999999999999999999999999987 89999999999987553221      1356777    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|+++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 ---------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ---------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     563 477999999999999999999999999999 57999999999999999876

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.80  E-value=2.3e-19  Score=143.84  Aligned_cols=119  Identities=19%  Similarity=0.372  Sum_probs=105.7

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+......+        ..++.+       
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~-------   66 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEE-------   66 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGG-------
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHH-------
Confidence            45677999999999999999999999999999999999999999999999999866532        124555       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..|+++++.+
T Consensus        67 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred             ------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence                  6777899999999999999999999999999999 57999999999999999865

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.80  E-value=2.7e-19  Score=145.60  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|+ +|+++|++|.+|+++....+..    +...++.+    
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~----   74 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLR----   74 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHH----
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHH----
Confidence            3566685  46899999999999999999999999999975 6899999999999987654321    11245666    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus        75 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           75 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ---------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence                     56 5688999999999999999999999999999 57999999999999999986

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.79  E-value=8e-19  Score=149.87  Aligned_cols=119  Identities=18%  Similarity=0.329  Sum_probs=106.4

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  .+++++++++++.+|+++|.+++++++||+|++ |+++|++|.+|++.....+.       +.++.+    
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----  111 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD----  111 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence            5677788  678999999999999999999999999999987 99999999999998765331       245555    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus       112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence                     78 7899999999999999999999999999999 57999999999999999976

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.79  E-value=3.5e-19  Score=144.60  Aligned_cols=118  Identities=14%  Similarity=0.325  Sum_probs=101.8

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+        +.++.+    
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~----   73 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS----   73 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence            4667787  678999999999999999999999999999985 9999999999998754311        234554    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred             ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     563 578999999999999999999999999999 57999999999999999986

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.79  E-value=5.8e-19  Score=145.42  Aligned_cols=123  Identities=17%  Similarity=0.212  Sum_probs=105.5

Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCC--cEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  309 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g--~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  309 (376)
                      +..+++++|.+++.++.+++++.+|++.|.+++++++||+|++|  +++|++|.+|++.....+...     +.++.+  
T Consensus         3 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~--   75 (141)
T 2rih_A            3 MAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-----DGPAMP--   75 (141)
T ss_dssp             --CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-----TSBSGG--
T ss_pred             cceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCC-----CCCHHH--
Confidence            34567888999999999999999999999999999999999888  999999999999866433111     244554  


Q ss_pred             hcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          310 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       310 ~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                 +|.+++.++.++ ++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus        76 -----------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           76 -----------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             -----------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             -----------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence                       777889999999 999999999999999999999 4799999999999987653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.78  E-value=1.4e-18  Score=139.68  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=105.3

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      ++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+.+....+..    ..+.++.+        
T Consensus         3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~--------   69 (125)
T 1pbj_A            3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE--------   69 (125)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH--------
T ss_pred             HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHH--------
Confidence            5667888999999999999999999999999999999 8999999999999986654321    12457777        


Q ss_pred             CCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          316 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       316 ~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                           +|.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||.+|+++++.+
T Consensus        70 -----~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 -----VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             -----HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC-
T ss_pred             -----HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                 6777899999999999999999999999999999 5 999999999999999864

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.78  E-value=2.3e-18  Score=141.00  Aligned_cols=122  Identities=19%  Similarity=0.355  Sum_probs=106.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHH-HHHHhcccccccccccccHHHHHhcCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di-~~~~~~~~~~~~~~~~~~v~~~l~~~~  313 (376)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+ ......+..     .+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   77 (138)
T 2p9m_A            9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYT-----LETTIGD------   77 (138)
T ss_dssp             BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCC-----SSCBHHH------
T ss_pred             CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhccc-----CCcCHHH------
Confidence            5667788899999999999999999999999999999989999999999999 876543221     1356777      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCC-----CcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPG-----VRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~-----~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                             +|.+++.++.+++++.+|++.|.+++     ++++||+| ++|+++|+||..|+++++.+
T Consensus        78 -------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           78 -------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             -------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence                   67778999999999999999999999     99999999 47999999999999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.78  E-value=2.2e-19  Score=147.23  Aligned_cols=121  Identities=13%  Similarity=0.275  Sum_probs=102.1

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|++.....+...     +.++.+    
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~-----~~~v~~----   74 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGD-----SDDVKK----   74 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGG-----GCCGGG----
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCC-----CcCHHH----
Confidence            4566787  578999999999999999999999999999987 8999999999998865421111     245555    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|+++++++
T Consensus        75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     674 488999999999999999999999999999 57999999999999998875

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.78  E-value=7.3e-19  Score=147.04  Aligned_cols=119  Identities=18%  Similarity=0.289  Sum_probs=104.7

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEE-CC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIV-DD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  310 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVv-d~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~  310 (376)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+ |+ +|+++|++|.+|++.....+.       +.++.+   
T Consensus        21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---   90 (153)
T 3oco_A           21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST---   90 (153)
T ss_dssp             BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG---
T ss_pred             EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH---
Confidence            46667875  78999999999999999999999999999 75 489999999999998654331       245555   


Q ss_pred             cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                +| +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++++
T Consensus        91 ----------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           91 ----------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ----------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             ----------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence                      77 7899999999999999999999999999999 57999999999999999976

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.78  E-value=2.7e-18  Score=144.77  Aligned_cols=126  Identities=21%  Similarity=0.228  Sum_probs=106.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc----cccccccHHHHHh
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ----IHLDEMNIHQALQ  310 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~----~~~~~~~v~~~l~  310 (376)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++..........    ....+.++.+   
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   82 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   82 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH---
Confidence            567778888999999999999999999999999999998999999999999988654321100    0011345565   


Q ss_pred             cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                +|.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        83 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           83 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                      7778899999999999999999999999999999 4 999999999999998753

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.78  E-value=5.2e-19  Score=143.27  Aligned_cols=121  Identities=13%  Similarity=0.166  Sum_probs=104.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|+ |+++|++|.+|+.+...++...     +.++.+       
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   72 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTV-----KEKLGE-------   72 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCT-----TCBCCG-------
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcc-----cCcHHH-------
Confidence            567779999999999999999999999999999999998 9999999999998754322110     123443       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..|+++++..
T Consensus        73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHHT
T ss_pred             ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence                  7778899999999999999999999999999999 47999999999999999864

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.77  E-value=2.7e-18  Score=140.74  Aligned_cols=121  Identities=18%  Similarity=0.355  Sum_probs=104.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~~~  313 (376)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++ +...+..     .+.++.+      
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   76 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-----YDIPVER------   76 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC-----TTSBGGG------
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCc-----ccCCHHH------
Confidence            567779889999999999999999999999999999998999999999999974 3332211     1345555      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                             +|.+++.++.+++++.+|++.|.+++++++ |+| ++|+++|+||..||++++..
T Consensus        77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHHC
T ss_pred             -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHHH
Confidence                   777889999999999999999999999999 999 46999999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.77  E-value=1.2e-18  Score=144.82  Aligned_cols=127  Identities=22%  Similarity=0.350  Sum_probs=104.0

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc---------cccccc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ---------IHLDEM  303 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~---------~~~~~~  303 (376)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++..........         ....+.
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            56777877  7999999999999999999999999999999999999999999986432111000         000123


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       304 ~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ++.+             +|..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        86 ~v~~-------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           86 LVGD-------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BHHH-------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHH-------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            4444             7777888999999999999999999999999999 47999999999999999865

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.77  E-value=2.3e-18  Score=140.19  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=105.6

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+......+...     +.++.+       
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCc-----ccCHHH-------
Confidence            56777988899999999999999999999999999999 89999999999998866543211     245555       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..|+++++..
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHHH
Confidence                  7777899999999999999999999999999999 47999999999999998753

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.77  E-value=2.9e-18  Score=141.29  Aligned_cols=126  Identities=25%  Similarity=0.484  Sum_probs=101.4

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCC
Q 017163          239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  318 (376)
Q Consensus       239 ~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  318 (376)
                      +|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+......+.+..   .+.++.+++.....   .
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~---~~~~v~~~m~~~~~---~   89 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND---LSLSVGEALMRRSD---D   89 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccccc---CCccHHHHHhcCcc---c
Confidence            36678999999999999999999999999999998999999999999998765432211   14677774422100   0


Q ss_pred             cccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          319 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       319 ~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                          ..++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        90 ----~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           90 ----FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             ----cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence                01578999999999999999999999999999 47999999999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.77  E-value=2.4e-18  Score=144.81  Aligned_cols=122  Identities=17%  Similarity=0.358  Sum_probs=104.4

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.++ +++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.....+..    ..+.++.+       
T Consensus        18 ~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-------   85 (159)
T 3fv6_A           18 QVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHI-------   85 (159)
T ss_dssp             BGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGG-------
T ss_pred             CHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHH-------
Confidence            466778874 599999999999999999999999999999999999999999986533211    11345665       


Q ss_pred             CCCCcccCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCC---eEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK---RVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~---~~~GvIs~~Dil~~l~~  375 (376)
                            +|..  ++.++.+++++.+|++.|.+++++++||+|+ +|   +++|+||..||++++..
T Consensus        86 ------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           86 ------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHHH
Confidence                  6766  7899999999999999999999999999994 67   99999999999999863

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.77  E-value=1.8e-18  Score=143.92  Aligned_cols=118  Identities=12%  Similarity=0.250  Sum_probs=104.8

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+.+....+..    +.+.++.+     
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-----   99 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIAD-----   99 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHH-----
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHH-----
Confidence            57788988  89999999999999999999999999999999999999999999987654321    12467777     


Q ss_pred             CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHH
Q 017163          313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  371 (376)
Q Consensus       313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~  371 (376)
                              +|..++.++.+++++.+|++.|.+++++++||+|+  ++++|+||..||++
T Consensus       100 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A          100 --------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             --------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             --------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence                    67778899999999999999999999999999995  49999999999975

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.77  E-value=1.6e-18  Score=146.90  Aligned_cols=123  Identities=20%  Similarity=0.366  Sum_probs=106.5

Q ss_pred             ccccccCC---CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANGR---PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+   +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+.+.+..+.....   +.++.+    
T Consensus        25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~---~~~v~~----   97 (165)
T 3fhm_A           25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASL---QQSVSV----   97 (165)
T ss_dssp             BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGG---TSBGGG----
T ss_pred             CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccc---cCCHHH----
Confidence            56677874   79999999999999999999999999999999999999999999986654321111   345665    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|.+++.+|.+++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTTC
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                     7778899999999999999999999999999999 5 999999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.77  E-value=8.5e-19  Score=142.79  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=104.8

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~-~~~~~~~~~~~~~~~~v~~~l~~~~  313 (376)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+.. ....+..    ..+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~------   78 (133)
T 1y5h_A            9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGE------   78 (133)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHH------
T ss_pred             CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHH------
Confidence            456678888999999999999999999999999999998999999999999984 4433211    11356777      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                             +|.+++.++.+++++.+|++.|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus        79 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           79 -------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             -------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred             -------HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                   6667889999999999999999999999999999 4 999999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.76  E-value=3.6e-18  Score=142.10  Aligned_cols=125  Identities=21%  Similarity=0.222  Sum_probs=103.8

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-cccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-IHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-~~~~~~~v~~~l~~  311 (376)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.......... -.....++.+    
T Consensus        16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   91 (150)
T 3lqn_A           16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ----   91 (150)
T ss_dssp             BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred             ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence            4566687  45899999999999999999999999999999999999999999998764321110 0111234444    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|..++.++.+++++.+|++.|.++++  +|||| ++|+++|+||.+||++++..
T Consensus        92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHHH
Confidence                     777889999999999999999999987  99999 47999999999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.76  E-value=7e-18  Score=142.26  Aligned_cols=131  Identities=14%  Similarity=0.234  Sum_probs=104.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|+  +|+++|++|.+|+......+..........++.+++...
T Consensus        14 ~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~   93 (164)
T 2pfi_A           14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG   93 (164)
T ss_dssp             BHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT
T ss_pred             CHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc
Confidence            567779889999999999999999999999999999996  799999999999998665332211111234667644321


Q ss_pred             CCCCCCcccCCCc-ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          313 QDANPSLGFNGQR-CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       313 ~~~~~~~~im~~~-~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      .        ...+ +.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++.+
T Consensus        94 ~--------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           94 C--------PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-R-GRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             C--------CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-T-TEEEEEEEHHHHHHHHHH
T ss_pred             c--------cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence            0        0112 78999999999999999999999999999 3 999999999999998753

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.75  E-value=1.8e-18  Score=148.22  Aligned_cols=138  Identities=22%  Similarity=0.348  Sum_probs=102.6

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc--------c--ccccc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q--IHLDE  302 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--------~--~~~~~  302 (376)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++++.......        .  ..+..
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            45667877  799999999999999999999999999999999999999999998532110000        0  00000


Q ss_pred             c-cHHHHHhcCCCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          303 M-NIHQALQLGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       303 ~-~v~~~l~~~~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      . .....+..  ....+. .+|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++..
T Consensus        85 ~~~~~~~~~~--~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           85 FNELQKLISK--TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             HHHHHHHHHT--TTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             hHHHHHHHhc--cccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHHH
Confidence            0 00000000  011122 17878889999999999999999999999999999 47999999999999999864

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.75  E-value=5.6e-18  Score=138.31  Aligned_cols=122  Identities=11%  Similarity=0.247  Sum_probs=103.8

Q ss_pred             ccccccC---CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG---RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.   +++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+......   ..+.++.+    
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~----   78 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP---VKDTQVKE----   78 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC---GGGSBGGG----
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCC---cccCCHHH----
Confidence            4566687   7899999999999999999999999999998 89999999999998633221111   11345555    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||.+|+++++.+
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           79 ---------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ---------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHC
T ss_pred             ---------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHHh
Confidence                     7778899999999999999999999999999999 4 999999999999999865

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.75  E-value=5.4e-18  Score=146.24  Aligned_cols=124  Identities=19%  Similarity=0.273  Sum_probs=106.5

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~  313 (376)
                      .+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++.........   ....++.+      
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~---~~~~~v~~------   79 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---PDEVPIRL------   79 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---GGGSBGGG------
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccC---cccCCHHH------
Confidence            467778999999999999999999999999999999999889999999999998865421111   11245555      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                             +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus        80 -------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           80 -------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             -------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             -------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                   7777899999999999999999999999999999 4799999999999998764

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.75  E-value=8.6e-18  Score=140.94  Aligned_cols=125  Identities=14%  Similarity=0.268  Sum_probs=105.8

Q ss_pred             cccccccccC------CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccH
Q 017163          232 WVPRIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNI  305 (376)
Q Consensus       232 ~~~~v~~~m~------~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v  305 (376)
                      +..+++++|.      +++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.+......   ..+.++
T Consensus         5 ~~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v   80 (157)
T 4fry_A            5 MSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATRV   80 (157)
T ss_dssp             --CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCBH
T ss_pred             HHHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccCH
Confidence            3345677776      5679999999999999999999999999965 89999999999999866433221   114677


Q ss_pred             HHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          306 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       306 ~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      .+             +|.+++.++.+++++.+|++.|.+++++++||+| + |+++|+||.+||++++..
T Consensus        81 ~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           81 EE-------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             HH-------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             HH-------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            77             6777899999999999999999999999999999 4 999999999999999864

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.75  E-value=1.5e-17  Score=139.65  Aligned_cols=125  Identities=9%  Similarity=0.136  Sum_probs=104.8

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCE-EEEECCCCcEEEEEeHHHHHHHHhccc---cc--------cccccc
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSS-IPIVDDNDSLLDIYSRSDITALAKDKA---YA--------QIHLDE  302 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~-lpVvd~~g~lvGiis~~Di~~~~~~~~---~~--------~~~~~~  302 (376)
                      +++++|.+++.++.+++++.+|++.|.++++++ +||+|++ +++|++|.+|++.......   ..        .....+
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            567789999999999999999999999999999 9999977 9999999999988643110   00        001113


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          303 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       303 ~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      .++.+             +|.+ +.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.+
T Consensus        96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHHH
Confidence            45555             7777 99999999999999999999999999999 46999999999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.74  E-value=1.1e-17  Score=140.06  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=103.4

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-cccccccccHHHHHhc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+  ++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+......+.. ....+.+.++.+    
T Consensus        12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   87 (157)
T 2emq_A           12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----   87 (157)
T ss_dssp             BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred             cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence            45666875  88899999999999999999999999999989999999999999986543211 000111234444    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|.+++.++.+++++.+|++.|.++++  +|||| ++|+++|+||.+||++++..
T Consensus        88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHH
T ss_pred             ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHH
Confidence                     777889999999999999999999987  99999 47999999999999998854

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.74  E-value=1e-17  Score=140.84  Aligned_cols=125  Identities=18%  Similarity=0.212  Sum_probs=104.8

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHhc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~-~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++....... +........++.+    
T Consensus        15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~----   90 (159)
T 1yav_A           15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   90 (159)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----
Confidence            45666877  8999999999999999999999999999999999999999999998765321 1111112456666    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|.+++.++.+++++.+|++.|.++++  +||+| ++|+++|+||.+||++++..
T Consensus        91 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           91 ---------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHHH
Confidence                     677789999999999999999999987  99999 47999999999999998753

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.73  E-value=2e-17  Score=141.30  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=101.1

Q ss_pred             ccccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|++ |+++|+++.+|++.....+.       +.++.     
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~-----  104 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN-----  104 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG-----
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH-----
Confidence            4566685  468899999999999999999999999999986 89999999999998654321       12222     


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                |.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++++
T Consensus       105 ----------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          105 ----------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ----------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             ----------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence                      235688999999999999999999999999999 57999999999999999976

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.73  E-value=4.6e-17  Score=146.89  Aligned_cols=199  Identities=12%  Similarity=0.089  Sum_probs=129.6

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCC-----CCccc--
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS-----SSLPI--  219 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~-----~~~~~--  219 (376)
                      +++|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++........     .....  
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~   83 (245)
T 3l2b_A           10 EDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL   83 (245)
T ss_dssp             GGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred             HHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence            4578889999999999999999999999999999975   57   89999999999998754321100     00000  


Q ss_pred             -------------ccccccccccccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCC----------
Q 017163          220 -------------LQQPVSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND----------  275 (376)
Q Consensus       220 -------------~~~~i~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g----------  275 (376)
                                   .....+.+.++.. ...+.+.+....+.+-.+  -.++.+.+.+.+++++++++...          
T Consensus        84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                         0000011111111 112233344443344443  47899999999999998885321          


Q ss_pred             --cEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC-CcceEecCCCCHHHHHHHHhcCCCcEEEE
Q 017163          276 --SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVI  352 (376)
Q Consensus       276 --~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~-~~~~~~~~~~tl~~a~~~m~~~~~~~l~V  352 (376)
                        .+-.+.+..|........      ....++++             +|. +++.++.+++++.+|++.|.+++++++||
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~------~~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pV  222 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLI------VQSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPV  222 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHG------GGGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEE
T ss_pred             HcCCeEEEeCCChHHHHHHH------hcCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEEE
Confidence              122333333332211100      00234444             787 88999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEeHHHHHHHH
Q 017163          353 VEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       353 Vd~~~~~~~GvIs~~Dil~~l  373 (376)
                      || ++|+++|+||.+|++++.
T Consensus       223 vd-~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          223 ID-ENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             EC-TTCBEEEEEECC------
T ss_pred             Ec-CCCeEEEEEEHHHhhchh
Confidence            99 479999999999999864

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.73  E-value=8.6e-18  Score=143.09  Aligned_cols=135  Identities=20%  Similarity=0.309  Sum_probs=103.9

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc---
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP---  223 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~---  223 (376)
                      +++|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++.+........  ...+...   
T Consensus        21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dll~~~~~~~~~~~--~~~~~~~~~~   92 (170)
T 4esy_A           21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NG---HLVGIITESDFLRGSIPFWIYEA--SEILSRAIPA   92 (170)
T ss_dssp             GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TS---CEEEEEEGGGGGGGTCCTTHHHH--HHHHTTTSCH
T ss_pred             HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---Cc---cEEEEEEHHHHHHHHhhccccch--hhhhhhccch
Confidence            4589999999999999999999999999999999976   67   89999999999986532211000  0000000   


Q ss_pred             --cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          224 --VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       224 --i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                        ...+.-......++++|+++++++++++++.+|+++|.+++++++||+| +|+++|+||++||++.+
T Consensus        93 ~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           93 PEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             hhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence              0000000012356788999999999999999999999999999999997 69999999999998854

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.72  E-value=4e-17  Score=143.35  Aligned_cols=117  Identities=15%  Similarity=0.203  Sum_probs=104.2

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC---CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQA---DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  310 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~---~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~  310 (376)
                      .+++++|+++++++.+++++.+|++.|.++   +++.+||+|++|+++|++|.+|++...          .+.++.+   
T Consensus        54 ~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~---  120 (205)
T 3kxr_A           54 NEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS---  120 (205)
T ss_dssp             TCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG---
T ss_pred             chHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH---
Confidence            357788999999999999999999999987   899999999999999999999986421          1345555   


Q ss_pred             cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                +|.+++.++.+++++.+|++.|.+++++.+|||| ++|+++|+||..|+++.+.
T Consensus       121 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          121 ----------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             ----------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                      8888899999999999999999999999999999 5799999999999999874

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.72  E-value=1.4e-17  Score=139.65  Aligned_cols=114  Identities=11%  Similarity=0.288  Sum_probs=99.7

Q ss_pred             ccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCC-cEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          235 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND-SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g-~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      +++++|.+  +++++++++++.+|++.|.+++++++||+|+++ +++|++|.+|++.....+       .+.++.+    
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~----  107 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKS----  107 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHH----
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHH----
Confidence            56777875  789999999999999999999999999999874 999999999998754332       1356777    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHH
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  370 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil  370 (376)
                               +|. ++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||+
T Consensus       108 ---------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 ---------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             ---------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence                     664 488999999999999999999999999999 579999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=2.4e-17  Score=145.65  Aligned_cols=120  Identities=14%  Similarity=0.200  Sum_probs=105.1

Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  310 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~  310 (376)
                      .|...++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+.....          +.++.+   
T Consensus        10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~---   76 (213)
T 1vr9_A           10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN---   76 (213)
T ss_dssp             ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG---
T ss_pred             ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH---
Confidence            4566778889999999999999999999999999999999998999999999999876321          234454   


Q ss_pred             cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||.+|+++++.
T Consensus        77 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           77 ----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             ----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence                      7878899999999999999999999999999999 4799999999999999875

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.71  E-value=4e-17  Score=140.43  Aligned_cols=125  Identities=14%  Similarity=0.231  Sum_probs=102.7

Q ss_pred             ccccccCCC----ceEe--cCCCCHHHHHHHHHhCCCCEEEEE--CCCCcEEEEEeHHHHHHHHhcccccccc-------
Q 017163          235 RIGEANGRP----FAML--RPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIH-------  299 (376)
Q Consensus       235 ~v~~~m~~~----~~~v--~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiis~~Di~~~~~~~~~~~~~-------  299 (376)
                      +++++|.+.    ++++  .+++++.+|+++|.+++++++||+  |++|+++|+||.+|++.....+......       
T Consensus        12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            566678766    7888  999999999999999999999999  7889999999999999865432110000       


Q ss_pred             -------------cccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeH
Q 017163          300 -------------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL  366 (376)
Q Consensus       300 -------------~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~  366 (376)
                                   ....++.+             +|.+++.++.+++++.+|++.|.+++++++||+|+  |+++|+||.
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~-------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--g~~vGiit~  156 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRN-------------ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITK  156 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGG-------------GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEH
T ss_pred             ecccCCcccccccccCccHHH-------------hhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC--CEEEEEEEH
Confidence                         00122222             78788999999999999999999999999999993  999999999


Q ss_pred             HHHHHHHh
Q 017163          367 SDVFRFLL  374 (376)
Q Consensus       367 ~Dil~~l~  374 (376)
                      +||++++.
T Consensus       157 ~dll~~l~  164 (185)
T 2j9l_A          157 KDVLKHIA  164 (185)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.70  E-value=1.2e-16  Score=140.22  Aligned_cols=122  Identities=15%  Similarity=0.119  Sum_probs=107.2

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC---CCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCc
Q 017163          141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  217 (376)
Q Consensus       141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~---~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~  217 (376)
                      |..+.+|.+|..+++++.+++++.+|++.|.++   +++.+||+|.   ++   +++|++|.+|++...           
T Consensus        51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~~-----------  113 (205)
T 3kxr_A           51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKHE-----------  113 (205)
T ss_dssp             SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTSC-----------
T ss_pred             CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhCC-----------
Confidence            778888999999999999999999999999987   8999999975   56   899999999987510           


Q ss_pred             cccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163          218 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       218 ~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~  293 (376)
                        ..            ..++++|.++++++++++++.+|++.|.+++++.+||||++|+++|+||..|++..+.+.
T Consensus       114 --~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          114 --PH------------EPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREH  175 (205)
T ss_dssp             --TT------------SBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             --Cc------------chHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence              11            235566888999999999999999999999999999999999999999999999977643

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=9.9e-17  Score=141.71  Aligned_cols=155  Identities=14%  Similarity=0.149  Sum_probs=100.8

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +..|..+++++.+++++.+|+++|.+++++.+||+|+   ++   +++|++|.+|+++.+.             .     
T Consensus        16 ~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~~-------------~-----   71 (213)
T 1vr9_A           16 KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLDL-------------D-----   71 (213)
T ss_dssp             GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSCT-------------T-----
T ss_pred             HHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhcC-------------C-----
Confidence            3468889999999999999999999999999999975   46   8999999999976321             1     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHH
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  306 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~  306 (376)
                             ..+.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++......         ...
T Consensus        72 -------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~  135 (213)
T 1vr9_A           72 -------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMD  135 (213)
T ss_dssp             -------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C--
T ss_pred             -------CcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCC
Confidence                   1355668889999999999999999999999999999998899999999999998654221         111


Q ss_pred             HHHhcCCCCCCCcccCCC-cceEecCCCCHHHHHHHHhcCCCcEEEEEe
Q 017163          307 QALQLGQDANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVE  354 (376)
Q Consensus       307 ~~l~~~~~~~~~~~im~~-~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd  354 (376)
                      +             .+.+ .+.+.....++.+|.+.|.+++++.++|++
T Consensus       136 ~-------------~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          136 V-------------PGIRFSVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             -------------------------------------------------
T ss_pred             C-------------CcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            1             0000 111223334599999999999999999886

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.70  E-value=7.2e-17  Score=135.50  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=98.1

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      ..+++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++.......   .....         
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~---------   85 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLSQ---EIMAD---------   85 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCCH---HHHTT---------
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhccccc---ccccc---------
Confidence            357999999999999999999999999999975   56   8999999999999876532110   00111         


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                         ..++++|.+++.++++++++.+|+++|.++++  +||||++|+++|+||++|+++.+.
T Consensus        86 ---~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           86 ---TDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             ---SBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHH
Confidence               24566699999999999999999999998765  999999999999999999998764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.69  E-value=1.7e-16  Score=143.13  Aligned_cols=140  Identities=16%  Similarity=0.286  Sum_probs=105.4

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC--CcEEEEEeHHHHHHHHhcccc--ccc-----------
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKDKAY--AQI-----------  298 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~--g~lvGiis~~Di~~~~~~~~~--~~~-----------  298 (376)
                      ..++++|.++++++.+++++.+|.++|.+++++++||||++  |+++|+||++||+.++.....  ...           
T Consensus        13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   92 (250)
T 2d4z_A           13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEG   92 (250)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC-
T ss_pred             CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccccc
Confidence            46788899999999999999999999999999999999864  689999999999986543210  000           


Q ss_pred             -----------------cccc---------------------------------------------------------cc
Q 017163          299 -----------------HLDE---------------------------------------------------------MN  304 (376)
Q Consensus       299 -----------------~~~~---------------------------------------------------------~~  304 (376)
                                       .+.+                                                         ++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  172 (250)
T 2d4z_A           93 RNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLT  172 (250)
T ss_dssp             --------------------------------------------------------------------------CCSCCB
T ss_pred             cccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccC
Confidence                             0000                                                         00


Q ss_pred             HHHHHhcC-CCCCCCc---c-cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          305 IHQALQLG-QDANPSL---G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       305 v~~~l~~~-~~~~~~~---~-im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ..+..... .....++   + +|...++++.++++|.+|..+|...|++++||++.  |+++||||+.|+++++.+
T Consensus       173 ~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~--GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          173 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            00000000 0001122   1 57888999999999999999999999999999994  999999999999999864

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.69  E-value=1.4e-16  Score=129.27  Aligned_cols=119  Identities=12%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             CCCCCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163          146 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  223 (376)
Q Consensus       146 ~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~  223 (376)
                      ++++|.  .+++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++.+.....         .. 
T Consensus         8 v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~~---------~~-   72 (130)
T 3i8n_A            8 VTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGSG---------QK-   72 (130)
T ss_dssp             CTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTTT---------TS-
T ss_pred             HhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCCC---------cC-
Confidence            455777  45779999999999999999999999999965  226   89999999999987653210         12 


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                                 .++++| +++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        73 -----------~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           73 -----------QLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             -----------BHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -----------CHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence                       344457 35789999999999999999999999999999999999999999998653

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.69  E-value=1.7e-16  Score=131.64  Aligned_cols=117  Identities=14%  Similarity=0.139  Sum_probs=101.0

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccc
Q 017163          147 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  224 (376)
Q Consensus       147 ~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i  224 (376)
                      +++|.+  +++++.+++++.+|++.|.+++++++||+|+  +.|   +++|++|.+|+++++....          ..  
T Consensus        26 ~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~--   88 (148)
T 3lv9_A           26 REIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KI--   88 (148)
T ss_dssp             GGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CC--
T ss_pred             HHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------Cc--
Confidence            457777  8999999999999999999999999999965  226   8999999999998765431          12  


Q ss_pred             ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          225 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       225 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                                .++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus        89 ----------~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           89 ----------ELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             ----------CGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             ----------cHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                      344558 78899999999999999999999999999999999999999999998654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.68  E-value=3.5e-16  Score=133.34  Aligned_cols=120  Identities=10%  Similarity=0.057  Sum_probs=102.8

Q ss_pred             CCCCCCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccc
Q 017163          145 GNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  222 (376)
Q Consensus       145 ~~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~  222 (376)
                      .++++|.  .+++++.+++++.+|+++|.+++++++||++.  +.+   +++|++|.+|+++.+....          . 
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~-  106 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------R-  106 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------C-
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------c-
Confidence            3456887  77899999999999999999999999999965  126   8999999999998764320          1 


Q ss_pred             ccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          223 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       223 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                                 ..++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+..
T Consensus       107 -----------~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          107 -----------LELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             -----------CCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             -----------ccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence                       2345558 789999999999999999999999999999999999999999999987653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.68  E-value=1.8e-16  Score=126.75  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=100.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..|+++++....           .      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~-----------~------   62 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNK-----------K------   62 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTC-----------C------
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhcc-----------c------
Confidence            57788999999999999999999999999999975   56   8999999999998765311           1      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                            .++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus        63 ------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           63 ------TIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             ------BGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             ------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence                  244557788999999999999999999999999999998899999999999998664

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.67  E-value=1e-16  Score=129.48  Aligned_cols=115  Identities=11%  Similarity=0.109  Sum_probs=95.7

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.+  +++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++.+....         ...    
T Consensus         8 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~~----   69 (127)
T 3nqr_A            8 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EAF----   69 (127)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CCC----
T ss_pred             hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CCC----
Confidence            4553  4889999999999999999999999999965  226   8999999999998653211         112    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                              .++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+
T Consensus        70 --------~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           70 --------SMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             --------CHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             --------CHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                    34455754 67999999999999999999999999999999999999999998854

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.66  E-value=4e-16  Score=126.43  Aligned_cols=114  Identities=11%  Similarity=0.132  Sum_probs=95.1

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.  .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|.+|+++++..           ...    
T Consensus        10 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~~----   69 (129)
T 3jtf_A           10 IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PAL----   69 (129)
T ss_dssp             HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TTS----
T ss_pred             hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CCc----
Confidence            455  57889999999999999999999999999965  226   89999999999885431           011    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                              .++++|. ++.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        70 --------~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           70 --------DIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             --------CGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             --------CHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                    2344464 4789999999999999999999999999999999999999999998654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.65  E-value=3.6e-16  Score=144.36  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=105.0

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  308 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  308 (376)
                      .+++++|.++++++++++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+ 
T Consensus       137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~-  205 (286)
T 2oux_A          137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD-  205 (286)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH-
T ss_pred             HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHH-
Confidence            467788999999999999999999999988     889999999999999999999987621          1356777 


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                  +|.+++.++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus       206 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          206 ------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        7777899999999999999999999999999999 5799999999999999875

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.65  E-value=1.6e-16  Score=130.04  Aligned_cols=117  Identities=9%  Similarity=0.093  Sum_probs=96.8

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.  .+++++.+++++.+|+++|.+++++++||++.  +.+   +++|++|.+|+++++....        ....    
T Consensus         8 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~~----   70 (136)
T 3lfr_A            8 IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDSD----   70 (136)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGGC----
T ss_pred             ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCCc----
Confidence            455  56889999999999999999999999999965  226   8999999999998654210        0112    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                              .+.++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus        71 --------~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           71 --------DVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             --------CGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             --------CHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                    34555755 889999999999999999999999999999999999999999998544

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.65  E-value=4e-16  Score=126.15  Aligned_cols=118  Identities=18%  Similarity=0.175  Sum_probs=100.8

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.+++.++.+++++.+|++.|.+++.+.+||+|+    |   +++|++|.+|+++.+.....               
T Consensus         8 ~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~~~---------------   65 (128)
T 3gby_A            8 SYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG----E---RYLGMVHLSRLLEGRKGWPT---------------   65 (128)
T ss_dssp             GGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHTTCSSSCC---------------
T ss_pred             HHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHhhCCc---------------
Confidence            3478889999999999999999999999999999963    5   89999999999874421100               


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                           ....++++|.+++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        66 -----~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           66 -----VKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             -----TTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -----ccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                 002355668889999999999999999999999999999999999999999999998664

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.65  E-value=6e-16  Score=124.18  Aligned_cols=117  Identities=17%  Similarity=0.216  Sum_probs=99.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|    +|   +++|++|.+|+++++......       ..       
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~~-------~~-------   64 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDDL-------AE-------   64 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCCT-------TT-------
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCcc-------cc-------
Confidence            5677899999999999999999999999999996    35   899999999999876542110       11       


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                           ..++++|.+++.++.+++++.+|++.|.+++++.+||+|+ |+++|++|.+|+++.+.+
T Consensus        65 -----~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           65 -----VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             -----SBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             -----cCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                 2345558888999999999999999999999999999997 999999999999986643

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.64  E-value=1.4e-15  Score=123.55  Aligned_cols=118  Identities=21%  Similarity=0.312  Sum_probs=101.3

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.++++++.+++++.+|++.|.+++.+.+||+|    +|   +++|++|..|+++++.....        ..     
T Consensus         7 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~-----   66 (133)
T 2ef7_A            7 KEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LE-----   66 (133)
T ss_dssp             GGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TT-----
T ss_pred             HHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cc-----
Confidence            347888899999999999999999999999999996    35   89999999999987654211        11     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                             ..+.++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++...
T Consensus        67 -------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           67 -------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             -------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -------cCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                   2345557778999999999999999999999999999998999999999999998664

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.64  E-value=3.6e-16  Score=130.56  Aligned_cols=116  Identities=11%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEE-ecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          149 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       149 ~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVv-d~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      +|.+  +++++.+++++.+|++.|.+++++++||+ +.  ..|   +++|++|.+|+++++....          .    
T Consensus        25 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~----   85 (153)
T 3oco_A           25 VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------K----   85 (153)
T ss_dssp             HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------T----
T ss_pred             EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------C----
Confidence            5654  78999999999999999999999999999 43  135   8999999999998765421          1    


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                              ..++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..+..
T Consensus        86 --------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 --------AKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             --------SBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             --------CcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence                    2345558 789999999999999999999999999999999999999999999987654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=1.2e-15  Score=123.81  Aligned_cols=115  Identities=9%  Similarity=0.126  Sum_probs=96.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      .+++++.+++++.+|+++|.+++++++||+++  +++   +++|++|.+|+++++.....       ...          
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~~-------~~~----------   69 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKKE-------FTK----------   69 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSSC-------CCH----------
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccCc-------cch----------
Confidence            46889999999999999999999999999953  246   89999999999987643210       001          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                        ..++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus        70 --~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           70 --EIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             --HHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --hhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence              1344457 56789999999999999999999999999999999999999999998664

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.64  E-value=7.8e-16  Score=141.57  Aligned_cols=118  Identities=18%  Similarity=0.268  Sum_probs=102.8

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  308 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  308 (376)
                      .+++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+ 
T Consensus       135 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~-  203 (278)
T 2yvy_A          135 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-  203 (278)
T ss_dssp             TBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT-
T ss_pred             chHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH-
Confidence            356777999999999999999999999987     789999999999999999999997621          1234444 


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                  +|.+++.++.+++++.+|++.|.+++.+++|||| ++|+++|+||..||++.+.+
T Consensus       204 ------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          204 ------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ------------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC--
T ss_pred             ------------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHHH
Confidence                        7878899999999999999999999999999999 47999999999999998753

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.64  E-value=1e-15  Score=128.77  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=103.4

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.++++++.+++++.+|+++|.+++++.+||+|+   +|   +++|++|..|+++++...+.....          .
T Consensus         8 ~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~----------~   71 (160)
T 2o16_A            8 EDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ----------G   71 (160)
T ss_dssp             GGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC---------------
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhccccc----------c
Confidence            3477788999999999999999999999999999975   56   899999999999987653321100          0


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                       .-......+.++|.+++.++.+++++.+|+++|.+++++.+||+|+ |+++|+||.+|+++.+.
T Consensus        72 -~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           72 -DSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             -----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             -cchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence             0001123456678889999999999999999999999999999987 99999999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.64  E-value=3.4e-16  Score=129.91  Aligned_cols=133  Identities=18%  Similarity=0.261  Sum_probs=101.7

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccc
Q 017163          147 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  224 (376)
Q Consensus       147 ~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i  224 (376)
                      +++|.+  +++++.+++++.+|++.|.+++++.+||+|+   ++   +++|++|..|+++++......     ..+. ..
T Consensus         8 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~-~~   75 (152)
T 4gqw_A            8 GEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTW-----KTFN-AV   75 (152)
T ss_dssp             GGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CC-----HHHH-HH
T ss_pred             hhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcc-----cchH-HH
Confidence            346766  7999999999999999999999999999975   56   899999999998754321100     0000 00


Q ss_pred             ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          225 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       225 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      ..+........+.++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus        76 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           76 QKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             HTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            0000011123566778888899999999999999999999999999999999999999999999765

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.63  E-value=3.7e-15  Score=134.31  Aligned_cols=211  Identities=12%  Similarity=0.149  Sum_probs=132.5

Q ss_pred             CCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCHHHHhhhhH
Q 017163           48 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  127 (376)
Q Consensus        48 ~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~~~l~~~~i  127 (376)
                      .++.|+|-  .++++++.+.++.+|++.|.++++..+||+|++ ++++|++|..|++..+......    ........+.
T Consensus         7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~----~~~~~~~~~~   79 (245)
T 3l2b_A            7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDS----NILAKSATSL   79 (245)
T ss_dssp             CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCT----THHHHTTCCH
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhh----hhhhhccCCH
Confidence            46778884  568899999999999999999999999999975 5699999999999877532210    0011111122


Q ss_pred             HHHHHHHHhhhcccccC------------------CCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCC
Q 017163          128 SAWKVGKLQLNLKRQMD------------------GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  189 (376)
Q Consensus       128 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~  189 (376)
                      ..+.+.....- .....                  ....+....++.+..   -.++...+.+.+++.+++.+.......
T Consensus        80 ~~v~~~l~~~~-l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~  155 (245)
T 3l2b_A           80 DNILDTLSAEA-QNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKE  155 (245)
T ss_dssp             HHHHHHTTCEE-EECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHH
T ss_pred             HHHHHHhCCEE-EeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHH
Confidence            22211110000 00000                  001122344555533   378888999999999988843111100


Q ss_pred             ------cceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccccccccccccC-CCceEecCCCCHHHHHHHHHh
Q 017163          190 ------CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQ  262 (376)
Q Consensus       190 ------~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~  262 (376)
                            ...+-.+.+..|........                     .....++++|+ +++.++++++++.+|+++|.+
T Consensus       156 v~~~a~~~~~~~i~t~~d~~~~~~~~---------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~  214 (245)
T 3l2b_A          156 IIELAKKNNITVITTPHDSFTASRLI---------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSE  214 (245)
T ss_dssp             HHHHHHHHTCEEEECSSCHHHHHHHG---------------------GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEeCCChHHHHHHH---------------------hcCCceeeEecCCccEEECCCCcHHHHHHHHHh
Confidence                  00123344444433211110                     11124667798 899999999999999999999


Q ss_pred             CCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          263 ADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       263 ~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                      ++++++||+|++|+++|++|.+|+++..
T Consensus       215 ~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          215 TRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             HCCSEEEEECTTCBEEEEEECC------
T ss_pred             cCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            9999999999999999999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.63  E-value=1.2e-15  Score=128.18  Aligned_cols=118  Identities=13%  Similarity=0.206  Sum_probs=99.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.++ +++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.....       ....     
T Consensus        21 ~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~-----   81 (159)
T 3fv6_A           21 DFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQE-------LTSV-----   81 (159)
T ss_dssp             GSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCSC-------TTTC-----
T ss_pred             HHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccCc-------ccCc-----
Confidence            467664 59999999999999999999999999975   56   89999999999987643211       0112     


Q ss_pred             cccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCC---cEEEEEeHHHHHHHHh
Q 017163          228 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAK  291 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g---~lvGiis~~Di~~~~~  291 (376)
                             .+.++|.+  ++.++.+++++.+|+++|.+++++++||+|++|   +++|+||.+|+++.+.
T Consensus        82 -------~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           82 -------PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -------BGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred             -------CHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence                   34555776  889999999999999999999999999999888   9999999999998665

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.63  E-value=1.4e-15  Score=124.36  Aligned_cols=119  Identities=21%  Similarity=0.380  Sum_probs=100.3

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhH-HHHHhhhccCCCCCccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~di-l~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      +.+|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+ ++++....        ...    
T Consensus        11 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~----   72 (138)
T 2p9m_A           11 KDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLE----   72 (138)
T ss_dssp             GGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSS----
T ss_pred             HHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCC----
Confidence            3477788999999999999999999999999999975   56   89999999999 87654210        011    


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                              ..++++|.+++.++.+++++.+|++.|.+++     ++.+||+|++|+++|++|.+|+++.+.
T Consensus        73 --------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           73 --------TTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             --------CBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             --------cCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                    2355568888999999999999999999999     999999998999999999999998654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.63  E-value=2.4e-15  Score=122.99  Aligned_cols=120  Identities=15%  Similarity=0.281  Sum_probs=100.7

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +.+|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++.+.....               
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~---------------   68 (138)
T 2yzi_A           10 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL---------------   68 (138)
T ss_dssp             GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC---------------
T ss_pred             HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcCC---------------
Confidence            4578889999999999999999999999999999975   56   89999999999843221100               


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                          .....+.++|.+++.++.+++++.+|++.|.+++++++ |+|++|+++|++|.+|+++.+..
T Consensus        69 ----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           69 ----PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             ----CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             ----cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence                01124556688899999999999999999999999999 99989999999999999987654

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=3.7e-15  Score=124.89  Aligned_cols=133  Identities=14%  Similarity=0.181  Sum_probs=102.6

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCce-eEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~-lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      +++|.++++++.+++++.+|++.|.+++++. +||+|+    +   +++|++|..|+++++...+.........+.....
T Consensus        19 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~   91 (157)
T 1o50_A           19 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   91 (157)
T ss_dssp             TTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             hhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence            4578899999999999999999999999999 999975    2   6999999999998765221000000000000000


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                          ......+.++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus        92 ----~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           92 ----RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             ----CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                0112356677888 999999999999999999999999999998999999999999998664

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.63  E-value=8.8e-16  Score=127.52  Aligned_cols=122  Identities=15%  Similarity=0.172  Sum_probs=99.7

Q ss_pred             CCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.  .+++++.+++++.+|++.|.+++++++||+|.   +|   +++|++|..|+++++.......          ...
T Consensus        20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~----------~~~   83 (150)
T 3lqn_A           20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERIE----------FER   83 (150)
T ss_dssp             HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSBC----------GGG
T ss_pred             cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhcccc----------hhH
Confidence            355  46889999999999999999999999999975   56   8999999999998764321100          000


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                          .....++++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|++|.+|+++.+..
T Consensus        84 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           84 ----LEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ----GGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----HhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence                01234667788899999999999999999999987  9999999999999999999997653

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=3.5e-15  Score=126.12  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=99.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      .+++++.+++++.+|+++|.+++++.+||+|+   +|   +++|++|..|+++++......      ...          
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~~----------   92 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SLQ----------   92 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GGT----------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------ccc----------
Confidence            36889999999999999999999999999975   56   899999999999987654211      011          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                        ..+.++|.+++.++.+++++.+|+++|.+++++++||+|+ |+++|+||..|++..+..
T Consensus        93 --~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           93 --QSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             --SBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             --CCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence              2355568888999999999999999999999999999998 999999999999997653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.62  E-value=3.6e-15  Score=127.30  Aligned_cols=121  Identities=7%  Similarity=0.050  Sum_probs=100.8

Q ss_pred             CCCCCCCC--CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccc
Q 017163          144 DGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ  221 (376)
Q Consensus       144 ~~~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~  221 (376)
                      ..++.+|.  .+++++.+++++.+|+++|.+++++++||++.  ..+   +++|++|.+|+++++....          .
T Consensus        36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~  100 (173)
T 3ocm_A           36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------R  100 (173)
T ss_dssp             SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------S
T ss_pred             CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------c
Confidence            34566885  46899999999999999999999999999965  226   8999999999998765321          1


Q ss_pred             cccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163          222 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       222 ~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~  293 (376)
                      .+            +.  |.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+...
T Consensus       101 ~~------------v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~  158 (173)
T 3ocm_A          101 VR------------RN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGE  158 (173)
T ss_dssp             CC------------GG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred             ch------------hH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence            11            22  235678999999999999999999999999999999999999999999977643

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.62  E-value=4.7e-15  Score=121.79  Aligned_cols=119  Identities=18%  Similarity=0.267  Sum_probs=99.7

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.++++++.+++++.+|++.|.+++++.+||+|+   ++ ..+++|++|..|+++++.....        ..     
T Consensus         8 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~-~~~~~Givt~~dl~~~~~~~~~--------~~-----   70 (141)
T 2rih_A            8 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DN-PKRPVAVVSERDILRAVAQRLD--------LD-----   70 (141)
T ss_dssp             GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TE-EEEEEEEEEHHHHHHHHHTTCC--------TT-----
T ss_pred             HHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC-cceeEEEEEHHHHHHHHhcCCC--------CC-----
Confidence            3478889999999999999999999999999999975   21 1159999999999987653211        11     


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                             ..+.++|.+++.++.++ ++.+|++.|.+++++.+||+|++|+++|++|.+|+++..
T Consensus        71 -------~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           71 -------GPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             -------SBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             -------CCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence                   23455588899999999 999999999999999999999899999999999998744

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.62  E-value=1.5e-15  Score=126.06  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=98.5

Q ss_pred             CCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccc
Q 017163          147 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  224 (376)
Q Consensus       147 ~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i  224 (376)
                      +++|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.....       ....  
T Consensus        31 ~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~--   95 (149)
T 3k2v_A           31 NDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGVD-------MRDA--   95 (149)
T ss_dssp             GGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSSC-------CTTC--
T ss_pred             HHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCCC-------cccC--
Confidence            347888  8999999999999999999999999999975   56   89999999999987643211       1122  


Q ss_pred             ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHH
Q 017163          225 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  288 (376)
Q Consensus       225 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~  288 (376)
                                .++++|.+++.++.+++++.+|++.|.+++++.+||+|++ +++|+||.+|+++
T Consensus        96 ----------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           96 ----------SIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             ----------BHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             ----------cHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                      3455587888999999999999999999999999999865 9999999999864

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.61  E-value=3.3e-15  Score=128.69  Aligned_cols=121  Identities=13%  Similarity=0.128  Sum_probs=102.6

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +.+|.++++++.+++++.+|+++|.+++++++||+++   +|   +++|++|.+|+++++......              
T Consensus        12 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~~--------------   71 (184)
T 1pvm_A           12 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK--------------   71 (184)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC--------------
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhcccC--------------
Confidence            4478889999999999999999999999999999975   46   899999999999866432100              


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                          .....++++|.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+.
T Consensus        72 ----~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 ----PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             ----GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ----cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence                0112456668888999999999999999999999999999998899999999999987554

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.61  E-value=4.5e-15  Score=124.36  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=95.8

Q ss_pred             CCCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163          146 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  223 (376)
Q Consensus       146 ~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~  223 (376)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|.+|+++++...          ... 
T Consensus        40 v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~~-  103 (156)
T 3oi8_A           40 VRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQF-  103 (156)
T ss_dssp             GGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GGC-
T ss_pred             HhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Ccc-
Confidence            4557775  7899999999999999999999999999965  235   799999999998854221          112 


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHH
Q 017163          224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  287 (376)
Q Consensus       224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~  287 (376)
                                 .++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++
T Consensus       104 -----------~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 -----------HLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             -----------CHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             -----------cHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                       34455754 78999999999999999999999999999999999999999985

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.61  E-value=3.1e-15  Score=123.00  Aligned_cols=119  Identities=22%  Similarity=0.231  Sum_probs=97.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++.....      .....+     
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~-----   78 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLS-----   78 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSB-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCcc-----
Confidence            56788999999999999999999999999999975   46   89999999999987653210      011222     


Q ss_pred             ccccccccccccCC------CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANGR------PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                             +.++|.+      ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        79 -------v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           79 -------VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -------HHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -------HHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                   3334543      6889999999999999999999999999998999999999999998654

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.61  E-value=5.7e-15  Score=123.46  Aligned_cols=125  Identities=15%  Similarity=0.210  Sum_probs=101.5

Q ss_pred             CCCCCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccc
Q 017163          146 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  223 (376)
Q Consensus       146 ~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~  223 (376)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......        .  
T Consensus        13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~--------~--   76 (157)
T 2emq_A           13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLERI--------E--   76 (157)
T ss_dssp             STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSSB--------C--
T ss_pred             HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhccccc--------c--
Confidence            3457775  8899999999999999999999999999975   56   899999999999865431100        0  


Q ss_pred             cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          224 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       224 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                      ..    ......+.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|++..+..
T Consensus        77 ~~----~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           77 FE----RLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GG----GGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             hH----HhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            00    001234566788899999999999999999999987  9999989999999999999987653

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.61  E-value=5.7e-16  Score=125.88  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=97.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHH-HHhhhccCCCCCccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~-~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|..|+++ ++.....                
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~----------------   70 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD----------------   70 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC----------------
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC----------------
Confidence            46678889999999999999999999999999975   46   8999999999984 4432110                


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                         .....++++|.+++.++.+++++.+|+++|.+++.+++||+|+ |+++|++|.+|+++.+
T Consensus        71 ---~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           71 ---PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             ---TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             ---ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence               0112455668889999999999999999999999999999997 9999999999998854

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.60  E-value=3.5e-15  Score=121.56  Aligned_cols=114  Identities=18%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++++++.+++++.+|++.|.+++++.+||+|    +|   +++|++|..|+++.+.....      ..            
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~------------   71 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PV------------   71 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CG------------
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------Cc------------
Confidence            6889999999999999999999999999996    35   89999999999874432110      00            


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      ....+.++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|.+|+++.+.
T Consensus        72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            11245666888999999999999999999999999999999 799999999999998664

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.59  E-value=3.9e-15  Score=148.89  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=105.8

Q ss_pred             cccccccCCCceEecCC-CCHHHHHHHHHhCCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 017163          234 PRIGEANGRPFAMLRPT-ASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  311 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~-~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~  311 (376)
                      .+++++|.++++++.++ +++.+|+++|.+++++++||+| ++|+++|+||.+||++.+..+...    .+.++.+    
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~----~~~~V~~----  455 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ----QSDPAIK----  455 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC----TTSBGGG----
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc----CCCcHHH----
Confidence            46888999999999999 9999999999999999999999 789999999999999866543211    1356666    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCC---CCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG---SKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~---~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|.+++.++.+++++.+|++.|.++++  +||||++   .|+++||||..||++++..
T Consensus       456 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          456 ---------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ---------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence                     788899999999999999999987775  6999942   3899999999999999864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.58  E-value=1.3e-14  Score=133.41  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=104.2

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163          141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  215 (376)
Q Consensus       141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~  215 (376)
                      +....++.+|.++++++.+++++.+|++.|.++     +++++||+|.   ++   +++|++|.+|++...         
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~~---------  196 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD---------  196 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHSC---------
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcCC---------
Confidence            566777889999999999999999999999987     7899999975   56   899999999998620         


Q ss_pred             CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                          ..            ..++++|.++++++++++++.+|++.|.+++++.+||||++|+++|+||..|++..+.+
T Consensus       197 ----~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 ----PR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ----TT------------CBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             ----CC------------CcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                11            23455588889999999999999999999999999999999999999999999986653

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.57  E-value=2.5e-15  Score=128.50  Aligned_cols=137  Identities=18%  Similarity=0.258  Sum_probs=100.5

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCC--CCCcccccccc
Q 017163          149 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS--SSSLPILQQPV  224 (376)
Q Consensus       149 ~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~--~~~~~~~~~~i  224 (376)
                      +|.+  +++++.+++++.+|+++|.+++++.+||+|+   ++   +++|++|..|++++........  ....+......
T Consensus         9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CC
T ss_pred             hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4555  7899999999999999999999999999975   56   8999999999986432111000  00000000000


Q ss_pred             ------ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          225 ------SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       225 ------~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                            ..+........++++|.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                  0000011223567789888999999999999999999999999999999999999999999998664

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.57  E-value=1.1e-14  Score=134.28  Aligned_cols=121  Identities=14%  Similarity=0.186  Sum_probs=105.1

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163          141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  215 (376)
Q Consensus       141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~  215 (376)
                      +....++.+|.++++++.+++++.+|++.|.++     +++++||+|.   +|   +++|++|.+|++...         
T Consensus       134 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~~---------  198 (286)
T 2oux_A          134 YEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVND---------  198 (286)
T ss_dssp             SCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTSC---------
T ss_pred             CChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcCC---------
Confidence            566667788999999999999999999999987     8899999975   56   899999999997620         


Q ss_pred             CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                          ..            ..++++|.++++++++++++.+|+++|.+++++++||||++|+++|+||..|++..+.+
T Consensus       199 ----~~------------~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 ----DD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             ----TT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----CC------------CcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                11            23455588889999999999999999999999999999999999999999999987653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.57  E-value=1.9e-14  Score=120.35  Aligned_cols=117  Identities=13%  Similarity=0.238  Sum_probs=98.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccccc
Q 017163          152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  231 (376)
Q Consensus       152 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~~  231 (376)
                      ++++++.+++++.+|++.|.+++++.+||.+    +|   +++|++|..|+++++......      ...          
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~~~----------   77 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------SKA----------   77 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------SSS----------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------ccc----------
Confidence            6789999999999999999999999999963    46   899999999999876543211      011          


Q ss_pred             cccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccc
Q 017163          232 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA  294 (376)
Q Consensus       232 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~  294 (376)
                        ..++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|.+|+++.+....
T Consensus        78 --~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           78 --TRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             --CBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred             --cCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence              245556888899999999999999999999999999998 799999999999999776443

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.56  E-value=3.3e-14  Score=128.12  Aligned_cols=141  Identities=12%  Similarity=0.133  Sum_probs=103.9

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC----------
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS----------  215 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~----------  215 (376)
                      ++++|.++++++.+++++.+|+++|.+++++++||+++ .+++   +++|+||.+|+++.+.........          
T Consensus        15 v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~   90 (250)
T 2d4z_A           15 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADE   90 (250)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCC
T ss_pred             hHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccc
Confidence            46789999999999999999999999999999999974 2235   799999999999887544211000          


Q ss_pred             -----------------Cccccccc--------------------------------------------------ccc--
Q 017163          216 -----------------SLPILQQP--------------------------------------------------VSS--  226 (376)
Q Consensus       216 -----------------~~~~~~~~--------------------------------------------------i~~--  226 (376)
                                       ...+....                                                  ...  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (250)
T 2d4z_A           91 EGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEM  170 (250)
T ss_dssp             C---------------------------------------------------------------------------CCSC
T ss_pred             cccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccc
Confidence                             00000000                                                  000  


Q ss_pred             cc---cccc-----cccc--c-cccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          227 IQ---LGTW-----VPRI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       227 l~---i~~~-----~~~v--~-~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      +.   ...|     ...+  . .+|.+.++++.+++++.+|..+|...|++++||++ .|+++|+||+.|+++++.
T Consensus       171 i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          171 LTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            00   0001     1122  2 35888999999999999999999999999999996 799999999999999775

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.56  E-value=9.5e-15  Score=122.55  Aligned_cols=122  Identities=9%  Similarity=0.105  Sum_probs=99.0

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          149 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       149 ~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++......          ....
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~----------~~~~   82 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI----------EFEK   82 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB----------CGGG
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc----------chhh
Confidence            4555  7889999999999999999999999999975   56   899999999999876432100          0000


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                          .....+.++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|+||++|+++.+..
T Consensus        83 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           83 ----LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             ----TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----hccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                01124566688899999999999999999999887  9999989999999999999987653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.54  E-value=5.2e-14  Score=138.61  Aligned_cols=121  Identities=17%  Similarity=0.257  Sum_probs=105.6

Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC-----CCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCC
Q 017163          141 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  215 (376)
Q Consensus       141 ~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~  215 (376)
                      |....++++|.++++++++++++.+|++.|.++     +++++||+|+   ++   +++|++|.+|++..      .   
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~------~---  216 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA------D---  216 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS------C---
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC------C---
Confidence            677788999999999999999999999999986     5899999975   46   89999999999861      0   


Q ss_pred             CccccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          216 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       216 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                          ...            .++++|.++++++++++++.+|++.|.++++..+||||++|+++|+||..|++....+
T Consensus       217 ----~~~------------~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 ----PRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ----TTS------------BGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ----CCC------------cHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence                112            3455588899999999999999999999999999999999999999999999986653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.54  E-value=3.3e-14  Score=119.51  Aligned_cols=124  Identities=14%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++.+++++.+|++.|.+++++++||+|++ ++|   +++|++|..|+++++.......   ......      
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~-~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~------   84 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVEST-ESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQ------   84 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHC----------CCCC------
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecC-CCC---EEEEEEEHHHHHHHHHhhcccc---CCcccc------
Confidence            577789999999999999999999999999999631 246   8999999999998775322110   000112      


Q ss_pred             ccccccccccccCCC------ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          229 LGTWVPRIGEANGRP------FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       229 i~~~~~~v~~~m~~~------~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                            .+.++|..+      +.++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+.+
T Consensus        85 ------~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           85 ------CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             ------BHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                  233334443      78999999999999999999999999998 7999999999999986653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.54  E-value=2e-14  Score=141.63  Aligned_cols=117  Identities=18%  Similarity=0.269  Sum_probs=103.7

Q ss_pred             cccccccCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163          234 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  308 (376)
Q Consensus       234 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  308 (376)
                      .+++++|.++++++++++++.+|++.|.++     +++++||+|++++++|++|.+|++...          .+.++.+ 
T Consensus       155 ~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~d-  223 (473)
T 2zy9_A          155 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE-  223 (473)
T ss_dssp             TBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGG-
T ss_pred             CCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHH-
Confidence            356777999999999999999999999986     589999999999999999999997620          1345665 


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                  +|.+++.++++++++.+|++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus       224 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 ------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             ------------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence                        8878899999999999999999999999999999 5799999999999998874

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.53  E-value=2.6e-14  Score=122.72  Aligned_cols=134  Identities=10%  Similarity=0.130  Sum_probs=99.6

Q ss_pred             ceEe--CCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCC----ccccccccccc
Q 017163          154 LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQPVSSI  227 (376)
Q Consensus       154 ~v~v--~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~----~~~~~~~i~~l  227 (376)
                      ++++  .+++++.+|+++|.+++++++||++++ ++|   +++|++|..|+++++..........    ...+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-CCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            7778  999999999999999999999999311 256   8999999999999876532110000    00000000000


Q ss_pred             c-ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          228 Q-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       228 ~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                      . .......++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||++|+++.+..
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            0 00112357778988999999999999999999999999999998 8999999999999986653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.52  E-value=2.9e-15  Score=152.74  Aligned_cols=139  Identities=16%  Similarity=0.073  Sum_probs=103.0

Q ss_pred             cccccccC--CCceEecCCCCHHHHHHHHH-hCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc-ccc---------c
Q 017163          234 PRIGEANG--RPFAMLRPTASLGSALALLV-QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIH---------L  300 (376)
Q Consensus       234 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~-~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~-~~~---------~  300 (376)
                      .+++++|.  +++.++++++++.++.+.|. +++.+++||+|++|+++|++|++|+.+....+... ...         .
T Consensus       453 ~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~  532 (632)
T 3org_A          453 MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL  532 (632)
T ss_dssp             SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------------
T ss_pred             CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence            46889999  89999999999999999999 89999999999999999999999998865432100 000         0


Q ss_pred             cccc----HHHHHhcC---------------CCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeE
Q 017163          301 DEMN----IHQALQLG---------------QDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  360 (376)
Q Consensus       301 ~~~~----v~~~l~~~---------------~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~  360 (376)
                      ....    +.......               ..+..+. ++|++++.++++++++.+|++.|.+++++++||+|  +|++
T Consensus       533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~l  610 (632)
T 3org_A          533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKL  610 (632)
T ss_dssp             --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEE
T ss_pred             CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEE
Confidence            0000    00000000               0000012 38999999999999999999999999999999996  3999


Q ss_pred             EEEEeHHHHHHHHh
Q 017163          361 EGIISLSDVFRFLL  374 (376)
Q Consensus       361 ~GvIs~~Dil~~l~  374 (376)
                      +|+||++|+++++.
T Consensus       611 vGIVT~~Dll~~~~  624 (632)
T 3org_A          611 VGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEEEGGGTEECCC
T ss_pred             EEEEehhhHHHHHh
Confidence            99999999987653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.50  E-value=1.3e-13  Score=136.69  Aligned_cols=114  Identities=16%  Similarity=0.269  Sum_probs=101.2

Q ss_pred             cccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          238 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       238 ~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      +.|..+++++.+++++.+++++|.+++++++||+|+  +|+++|++|.+|+...   .   .   .+.++.+        
T Consensus       117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~---~---~~~~V~~--------  179 (511)
T 3usb_A          117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q---D---YSIKISD--------  179 (511)
T ss_dssp             SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C---C---SSSBHHH--------
T ss_pred             cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c---c---CCCcHHH--------
Confidence            446778899999999999999999999999999998  8999999999999641   1   1   1467777        


Q ss_pred             CCCcccCCC-cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          316 NPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       316 ~~~~~im~~-~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                           +|.+ +++++.+++++.++++.|.+++++.+|||| ++|+++|+||..|+++.+.
T Consensus       180 -----vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          180 -----VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             -----HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence                 7776 899999999999999999999999999999 5899999999999999874

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.43  E-value=6.9e-13  Score=131.55  Aligned_cols=115  Identities=19%  Similarity=0.288  Sum_probs=101.5

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd--~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      .++|..+++++.+++++.++++.|.+++++++||+|  ++++++|++|.+|++...      .   .+.++.+       
T Consensus        93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~------~---~~~~v~~-------  156 (491)
T 1zfj_A           93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------D---YNAPISE-------  156 (491)
T ss_dssp             TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS------C---SSSBTTT-------
T ss_pred             HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc------c---CCCcHHH-------
Confidence            455888899999999999999999999999999999  789999999999997531      0   1244554       


Q ss_pred             CCCCcccCCC-cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          315 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       315 ~~~~~~im~~-~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                            +|.+ ++.++.+++++.++++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence                  7877 899999999999999999999999999999 5799999999999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.41  E-value=3.1e-12  Score=126.75  Aligned_cols=156  Identities=12%  Similarity=0.152  Sum_probs=117.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      .|..+++++.+++++.+|+++|.+++++++||+|+. .++   +++|++|.+|+..      .      .....      
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~------~~~~~------  175 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------I------QDYSI------  175 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------C------CCSSS------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------h------ccCCC------
Confidence            567788999999999999999999999999999641 135   8999999999854      0      00122      


Q ss_pred             ccccccccccccCC-CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 017163          229 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  307 (376)
Q Consensus       229 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~  307 (376)
                            .+.++|++ +++++++++++.+++++|.+++++.+||||++|+++|++|..|+++.......         ..+
T Consensus       176 ------~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a---------~~D  240 (511)
T 3usb_A          176 ------KISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNS---------AKD  240 (511)
T ss_dssp             ------BHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---------CBC
T ss_pred             ------cHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccc---------hhh
Confidence                  34555887 89999999999999999999999999999999999999999999987643110         000


Q ss_pred             HHhcCCCCCCCcccCCCc--ceEecCCCCHHHHHHHHhcCCCcEEEEEe
Q 017163          308 ALQLGQDANPSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVE  354 (376)
Q Consensus       308 ~l~~~~~~~~~~~im~~~--~~~~~~~~tl~~a~~~m~~~~~~~l~VVd  354 (376)
                                   .+.+.  ...+.......+.++.|.+.++..++|-.
T Consensus       241 -------------~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          241 -------------KQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             -------------TTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             -------------hccceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence                         11111  22334344455667778888888776654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.41  E-value=4e-13  Score=134.30  Aligned_cols=122  Identities=13%  Similarity=0.133  Sum_probs=101.9

Q ss_pred             CCCCCCCCceEeCCC-CCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccc
Q 017163          146 NGRPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  224 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~-~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i  224 (376)
                      ++++|.++++++.++ +++.+|+++|.+++++++||+|.  +++   +++|+||.+|+++.+......       ...  
T Consensus       386 V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~~-------~~~--  451 (527)
T 3pc3_A          386 IAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNRQ-------QSD--  451 (527)
T ss_dssp             GGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCCC-------TTS--
T ss_pred             HHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccCc-------CCC--
Confidence            456889999999999 99999999999999999999971  156   899999999999887643211       122  


Q ss_pred             ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC----CcEEEEEeHHHHHHHHhcc
Q 017163          225 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       225 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~----g~lvGiis~~Di~~~~~~~  293 (376)
                                .+.++|.++++++.+++++.+++++|.++++  +||||++    |+++|+||++||++.+.+.
T Consensus       452 ----------~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          452 ----------PAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             ----------BGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             ----------cHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence                      3555688899999999999999999987765  7999984    9999999999999977643

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.41  E-value=7.9e-14  Score=137.67  Aligned_cols=114  Identities=15%  Similarity=0.269  Sum_probs=86.4

Q ss_pred             ccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163          237 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       237 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  316 (376)
                      ++.|..+++++.+++++.+++++|.+++++++||+|++++++|++|.+|+...   .   .   .+.++.+         
T Consensus        92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~---~---~~~~v~d---------  153 (496)
T 4fxs_A           92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T---D---LTKSVAA---------  153 (496)
T ss_dssp             CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C---C---TTSBGGG---------
T ss_pred             ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c---c---CCCcHHH---------
Confidence            34477789999999999999999999999999999999999999999999621   0   0   1345555         


Q ss_pred             CCcccCC-C-cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          317 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       317 ~~~~im~-~-~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                          +|. . +++++.+++++.++++.|.+++++.+|||| ++|+++|+||..||++..
T Consensus       154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred             ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence                776 3 589999999999999999999999999999 589999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.39  E-value=3.3e-14  Score=141.02  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163          240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  316 (376)
                      |.++++++.+++++.+|+++|.+++++++||+|++   |+++|++|.+|++.. . .   .   .+.++.+         
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~-~---~---~~~~V~d---------  165 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L-T---Q---TETKVSD---------  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-c---c---ccCcHHH---------
Confidence            66789999999999999999999999999999987   899999999999863 1 0   1   1345555         


Q ss_pred             CCcccCCCc--ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          317 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       317 ~~~~im~~~--~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                          +|.++  +.++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       166 ----iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          166 ----MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ----HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence                77766  99999999999999999999999999999 5799999999999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.38  E-value=4.3e-14  Score=140.27  Aligned_cols=116  Identities=16%  Similarity=0.285  Sum_probs=5.2

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      +.++|.++++++.+++++.+|+++|.+++++++||+|++++++|+||.+|+....      .   .+.++.+        
T Consensus        97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------~---~~~~v~~--------  159 (494)
T 1vrd_A           97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------N---LSKKIKD--------  159 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------C---CCCcHHH--------
Confidence            3455888899999999999999999999999999999889999999999998621      0   1245555        


Q ss_pred             CCCcccCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          316 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       316 ~~~~~im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                           +|.+  ++.++.+++++.++++.|.+++++++|||| ++|+++|+||..|+++.+.
T Consensus       160 -----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          160 -----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -------------------------------------------------------CHHHHT
T ss_pred             -----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence                 7776  899999999999999999999999999999 5799999999999999874

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.35  E-value=7.3e-14  Score=137.82  Aligned_cols=114  Identities=14%  Similarity=0.264  Sum_probs=1.3

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  315 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~  315 (376)
                      +++.|..+++++.+++++.+|+++|.+++++.+||+| +|+++|++|.+|+.....         .+.++.+        
T Consensus        90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~--------  151 (490)
T 4avf_A           90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAA--------  151 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHH--------
Confidence            3445777889999999999999999999999999999 899999999999964210         1345565        


Q ss_pred             CCCcccCC-C-cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          316 NPSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       316 ~~~~~im~-~-~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                           +|. + ++.++.+++++.+|++.|.+++++.+|||| ++|+++|+||..|+++..
T Consensus       152 -----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          152 -----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ------------------------------------------------------------
T ss_pred             -----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence                 676 3 699999999999999999999999999999 589999999999999874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.32  E-value=1.6e-13  Score=135.99  Aligned_cols=166  Identities=14%  Similarity=0.113  Sum_probs=22.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163          150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  229 (376)
Q Consensus       150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  229 (376)
                      |..+++++.+++++.+|+++|.+++++++||+|++...+   +++|++|.+|++..  .         ....        
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~--------  160 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---------TQTE--------  160 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---------cccc--------
Confidence            677899999999999999999999999999997511116   89999999999752  0         0011        


Q ss_pred             cccccccccccCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 017163          230 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  307 (376)
Q Consensus       230 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~  307 (376)
                          ..+.++|.++  ++++++++++.+|+++|.+++++.+||+|++|+++|+||.+|+++........     ..... 
T Consensus       161 ----~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~-----~d~~~-  230 (503)
T 1me8_A          161 ----TKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNEL-----VDSQK-  230 (503)
T ss_dssp             -----------------------------------------------------------------CCCC-----BCTTS-
T ss_pred             ----CcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccch-----hcccc-
Confidence                2345568877  99999999999999999999999999999999999999999999865422110     00000 


Q ss_pred             HHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEE
Q 017163          308 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  363 (376)
Q Consensus       308 ~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~Gv  363 (376)
                                .  ++.  ...+.. ....+.++.|.+.+++.+.| |..+|...|+
T Consensus       231 ----------~--l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~V-d~~~g~~~~~  270 (503)
T 1me8_A          231 ----------R--YLV--GAGINT-RDFRERVPALVEAGADVLCI-DSSDGFSEWQ  270 (503)
T ss_dssp             ----------C--BCC--EEEECS-SSHHHHHHHHHHHTCSEEEE-CCSCCCSHHH
T ss_pred             ----------c--ccc--ccccCc-hhHHHHHHHHHhhhccceEE-ecccCcccch
Confidence                      0  111  123344 66667788888889986554 3223544443

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.31  E-value=1.3e-12  Score=133.13  Aligned_cols=136  Identities=12%  Similarity=0.060  Sum_probs=99.9

Q ss_pred             CCCCC--CCceEeCCCCCHHHHHHHHH-hCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCc------
Q 017163          147 GRPCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------  217 (376)
Q Consensus       147 ~~~~~--~~~v~v~~~~sl~~a~~~m~-~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~------  217 (376)
                      +++|.  ++++++++++++.++.+.|. +++++++||+|+   ++   +++|++|.+|+++.+...........      
T Consensus       456 ~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          456 REIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             HHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC--------------
T ss_pred             HHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            55787  88999999999999999999 899999999975   56   89999999999987654321111000      


Q ss_pred             -----ccccccccccc-----------------ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCC
Q 017163          218 -----PILQQPVSSIQ-----------------LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  275 (376)
Q Consensus       218 -----~~~~~~i~~l~-----------------i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g  275 (376)
                           ..+.+.++.+.                 .-...+++.++|+++++++++++++.+|+++|.+++++++||+ ++|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                 00000111110                 0011124788999999999999999999999999999999999 789


Q ss_pred             cEEEEEeHHHHHHH
Q 017163          276 SLLDIYSRSDITAL  289 (376)
Q Consensus       276 ~lvGiis~~Di~~~  289 (376)
                      +++|+||++|+++.
T Consensus       609 ~lvGIVT~~Dll~~  622 (632)
T 3org_A          609 KLVGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEEEGGGTEEC
T ss_pred             EEEEEEehhhHHHH
Confidence            99999999999763

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.30  E-value=2.4e-13  Score=131.67  Aligned_cols=109  Identities=19%  Similarity=0.242  Sum_probs=0.0

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163          240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  316 (376)
                      |-.+++++.|+.++.+|+++|.+++++.+||+|+   +++|+|++|.+|+...   .    .   +.++.+         
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d----~---~~~V~e---------  204 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---D----A---ETPIKS---------  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---c----c---ceEhhh---------
Confidence            4457889999999999999999999999999986   6799999999998651   1    1   245666         


Q ss_pred             CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHH
Q 017163          317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  372 (376)
Q Consensus       317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~  372 (376)
                          +|+.+++++..+.++.+|.+.|.++++..||||| ++++++|+||..|+++.
T Consensus       205 ----vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          205 ----VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             ----hcccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence                8888999999999999999999999999999999 58999999999999875

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.29  E-value=2.7e-11  Score=120.10  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=99.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|..+++++.+++++.++++.|.+++++++||+|. .+++   +++|++|.+|++...     .       ..       
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~~-----~-------~~-------  151 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFIS-----D-------YN-------  151 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCS-----C-------SS-------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhhc-----c-------CC-------
Confidence            67889999999999999999999999999999961 0146   899999999997620     0       11       


Q ss_pred             ccccccccccccCC-CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                           ..+.++|.+ +++++++++++.+++++|.+++++.+||||++|+++|++|..|+++...
T Consensus       152 -----~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          152 -----APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             -----SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                 234556887 8999999999999999999999999999999999999999999999776

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.27  E-value=9.7e-13  Score=127.43  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccccc
Q 017163          150 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  229 (376)
Q Consensus       150 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i  229 (376)
                      +-.+++++.|+.++.+|+++|.+++++.+||++....++   +++||+|.+|+. |-     .       ...       
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~-----d-------~~~-------  200 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ-----D-------AET-------  200 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc-----c-------cce-------
Confidence            556789999999999999999999999999997644456   899999999963 21     0       122       


Q ss_pred             cccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          230 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       230 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                           .+.++|+++++++....++.+|.++|.++++..+||||++|+|+|+||+.|+.+..
T Consensus       201 -----~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          201 -----PIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             -----EhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                 34555999999999999999999999999999999999999999999999998744

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.23  E-value=3.5e-12  Score=125.92  Aligned_cols=112  Identities=15%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      .|..+++++.+++++.+|+++|.+++++++||+|+   ++   +++|++|.+|+..      .      .....      
T Consensus        94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~------~~~~~------  149 (496)
T 4fxs_A           94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------V------TDLTK------  149 (496)
T ss_dssp             --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------C------CCTTS------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------c------ccCCC------
Confidence            57788999999999999999999999999999975   46   8999999999852      0      01122      


Q ss_pred             ccccccccccccC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          229 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       229 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                            .+.++|+ + +++++++++++.+++++|.++++..+||||++|+++|+||..|+++..
T Consensus       150 ------~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          150 ------SVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ------BGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             ------cHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence                  3445577 3 589999999999999999999999999999999999999999998854

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.19  E-value=4.9e-12  Score=125.46  Aligned_cols=113  Identities=19%  Similarity=0.303  Sum_probs=4.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++.+++++.+|+++|.+++++.+||+|+   ++   +++|++|..|+++.  .   .       ..       
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~--~---~-------~~-------  154 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFE--K---N-------LS-------  154 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhh--c---C-------CC-------
Confidence            67788999999999999999999999999999975   46   89999999999751  0   0       11       


Q ss_pred             ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                           ..+.++|.+  +++++.+++++.+++++|.++++..+||||++|+++|++|..|+++...
T Consensus       155 -----~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          155 -----KKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -----------------------------------------------------------CHHHHT
T ss_pred             -----CcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence                 234556887  8999999999999999999999999999999999999999999998764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.19  E-value=1.6e-13  Score=136.71  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      +.++|.++++++.+++++.+|+++|.+++++++||+|+   +++++|++|.+|+......       ..+.++.+     
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~-----  177 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSE-----  177 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHH-----
Confidence            44557778899999999999999999999999999997   5899999999998763210       01245555     


Q ss_pred             CCCCCCcccCCC--cceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          313 QDANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       313 ~~~~~~~~im~~--~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                              +|.+  ++.++.+++++.+|++.|.+++++++|||| ++|+++|+||.+|+++++
T Consensus       178 --------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          178 --------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred             --------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence                    6776  899999999999999999999999999999 579999999999988754

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.18  E-value=2.4e-12  Score=127.31  Aligned_cols=109  Identities=17%  Similarity=0.316  Sum_probs=0.0

Q ss_pred             ccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCC
Q 017163          239 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  318 (376)
Q Consensus       239 ~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~  318 (376)
                      .|..+++++.+++++.+++++|.+++++.+||+|+ ++++|+++.+|++.   .     .   +.++.+           
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~-----~---~~~v~~-----------  154 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R-----E---GKLVKE-----------  154 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C-----C---CCCHHH-----------
Confidence            46678899999999999999999999999999987 99999999999875   1     1   245555           


Q ss_pred             cccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          319 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       319 ~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                        +|.+++.++.+++++.++++.|.+++++.+|||| +.|+++|+||..||++.+
T Consensus       155 --im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          155 --LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             --HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence              6777889999999999999999999999999999 579999999999999875

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.17  E-value=7.7e-12  Score=123.37  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=0.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      .|..+++++.+++++.+|+++|.+++++++||+|    ++   +++|++|.+|+...            .....      
T Consensus        93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~------------~~~~~------  147 (490)
T 4avf_A           93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK------------PNAGD------  147 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc------------cccCC------
Confidence            5778899999999999999999999999999996    35   89999999998531            00122      


Q ss_pred             ccccccccccccC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                            .+.++|+ + +++++++++++.+|+++|.++++..+||||++|+++|+||+.|+++...
T Consensus       148 ------~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          148 ------TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ------cHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                  3455587 4 6999999999999999999999999999999999999999999998653

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.10  E-value=1.4e-10  Score=82.98  Aligned_cols=69  Identities=13%  Similarity=0.234  Sum_probs=54.5

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCcccCC
Q 017163          244 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  323 (376)
Q Consensus       244 ~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~  323 (376)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+......   ..+.++++             +|+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~---~~~~~V~~-------------iMt   64 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKN---PKEVKVEE-------------IMT   64 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCC---GGGCBGGG-------------TCE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCC---cccCCHHH-------------hcC
Confidence            57999999999999999999999999997 68999999999998644322221   12456666             887


Q ss_pred             CcceEe
Q 017163          324 QRCQMC  329 (376)
Q Consensus       324 ~~~~~~  329 (376)
                      ++++|+
T Consensus        65 ~~~iTV   70 (70)
T 3ghd_A           65 KNPVKI   70 (70)
T ss_dssp             ECTTCC
T ss_pred             CCCeEC
Confidence            777653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.01  E-value=5.3e-11  Score=117.63  Aligned_cols=160  Identities=16%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      .|..+++++.+++++.+++++|.+++++++||++.    +   +++|+++.+|++.   .           ...      
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~-----------~~~------  150 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R-----------EGK------  150 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C-----------CCC------
Confidence            56788999999999999999999999999999963    4   7999999999864   0           112      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHH
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  308 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~  308 (376)
                            .+.++|.++++++.+++++.+++++|.+++++.+||||++|+++|++|.+|+++......         ...+ 
T Consensus       151 ------~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~---------~~~~-  214 (486)
T 2cu0_A          151 ------LVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN---------AVRD-  214 (486)
T ss_dssp             --------------------------------------------------------------CCTT---------CCBC-
T ss_pred             ------CHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccc---------cccc-
Confidence                  344558878999999999999999999999999999999999999999999998653110         0000 


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEE
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII  364 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvI  364 (376)
                            ....  ++-.  ..+..++  .+.+..|...++..+ |+|...|...+++
T Consensus       215 ------~~g~--~~v~--~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          215 ------ENGE--LLVA--AAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             ------TTSC--BCCE--EEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             ------cCCc--eeec--ceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence                  0001  1100  1223333  566778899999876 5662345544444

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.99  E-value=1.6e-11  Score=122.28  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=67.1

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      .+|.++++++.+++++.+|+++|.+++++.+||+|++..++   +++|++|.+|+.....          ....      
T Consensus       112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~------  172 (514)
T 1jcn_A          112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHT------  172 (514)
T ss_dssp             TTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC------------------------
T ss_pred             hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCC------
Confidence            36777889999999999999999999999999996411136   8999999999865210          0011      


Q ss_pred             cccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          228 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                            ..+.++|.+  +++++.+++++.+|+++|.++++..+||||++|+++|++|++|+++..
T Consensus       173 ------~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          173 ------TLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             ------CCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                  234556887  899999999999999999999999999999999999999999987644

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.80  E-value=1.3e-08  Score=72.60  Aligned_cols=47  Identities=15%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             ceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          326 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       326 ~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                      ++++.+++++.+|++.|.+++++++||+|+  |+++|+||.+|+++.++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            679999999999999999999999999994  89999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	376
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-15
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-13
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-09
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	0.004
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	7e-09
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	9e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	7e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	7e-04
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-06
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	9e-05
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.003
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	6e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 71.2 bits (173), Expect = 3e-15
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 40  RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 99
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 100 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 159
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 160 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 214
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK I  + K ++
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILKFISMNCKETA 176

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 246 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSD-ITALAKDKAYAQIHLDEM 303
           +   T  + ++L+LL   ++ S P+   + +    + + +D +  +      +       
Sbjct: 34  VFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA 93

Query: 304 NIHQALQLG-QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE----AGSK 358
            I +   LG ++    +G              L      ++    RR+ +++     GS+
Sbjct: 94  EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSE 153

Query: 359 RVEGIISLSDVFRFL 373
            +  +++   + +F+
Sbjct: 154 MIVSVLTQYRILKFI 168

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.8 bits (157), Expect = 3e-13
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 41  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 100
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 101 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 160
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 161 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 206
            SL +    +++NK+  +P+I            LY+ +   ILK +
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFL 153

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 246 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN 304
           +   +  +  A   LV   V + P+      S + + + +D   +     Y +  L ++ 
Sbjct: 27  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYKSALVQIY 84

Query: 305 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII 364
             +  ++       L  + +       +  L   +  L    + RL +++  S     I+
Sbjct: 85  ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL 144

Query: 365 SLSDVFRFL 373
           +   + +FL
Sbjct: 145 THKRILKFL 153

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 223 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 282
           P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++Y 
Sbjct: 2   PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 52

Query: 283 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERL 342
             D+  L +D  Y+ + L                     N      C  +D L  + + +
Sbjct: 53  SVDVMHLIQDGDYSNLDLSVGEALLKRP----------ANFDGVHTCRATDRLDGIFDAI 102

Query: 343 ANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375
            +  V RL +V+    ++EGI+SL+D+  +++ 
Sbjct: 103 KHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 219 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 278
            L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L+
Sbjct: 3   FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 53

Query: 279 DIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKV 338
           ++Y   D+  L K   Y  + L                     + +    C ++D L  +
Sbjct: 54  NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----------DDFEGVYTCTKNDKLSTI 103

Query: 339 MERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 104 MDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 18/135 (13%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +        + +V   + Q +V++VPII   G   +  E   +  L            
Sbjct: 17  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 76

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
              + +                                   L + +  + +A V    +V
Sbjct: 77  VGEALMRRSDDFEGVY------------------TCTKNDKLSTIMDNIRKARVHRFFVV 118

Query: 272 DDNDSLLDIYSRSDI 286
           DD   L+ + + SDI
Sbjct: 119 DDVGRLVGVLTLSDI 133

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
           R    L  T +L  A  L+   D+  +PIVD N  LL I S+ D+ A  +         D
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 361
            +     L                         L +    +    +  L +V      + 
Sbjct: 70  SLAFETPLFE---------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLV 118

Query: 362 GIISLSDVFRFLL 374
           GII+ SD     +
Sbjct: 119 GIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
           R         +L +    +    +  VPI+ +       +++L + S  D+L       +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA------NKKLLGIVSQRDLLAAQESSLQ 63

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
            S+    +  +               E        + P A L  +   + +  +  +P+V
Sbjct: 64  RSAQGDSLAFETPLF-----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 272 DDNDSLLDIYSRSDI 286
             +  L+ I + SD 
Sbjct: 113 AKD-VLVGIITDSDF 126

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 7e-09
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)

Query: 220 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 279
           + + +  +Q+GT+            AM+R T  +  AL + VQ  VS++P+VD+   ++D
Sbjct: 7   MSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 57

Query: 280 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 339
           IYS+ D+  LA +K Y  + +      Q      +              C   + L  ++
Sbjct: 58  IYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK----------CYLHETLEAII 107

Query: 340 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
            RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 108 NRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
             +        +       +Q++V+ +P++   G       ++ + S  D++        
Sbjct: 20  ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLAAEKTY 73

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
           ++            S                         +L + +  LV+A+V  + +V
Sbjct: 74  NNLDVSVTKALQHRSHYF------------EGVLKCYLHETLEAIINRLVEAEVHRLVVV 121

Query: 272 DDNDSLLDIYSRSDI 286
           D++D +  I S SDI
Sbjct: 122 DEHDVVKGIVSLSDI 136

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI               
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 361
           E  + +                        + PL +V+ ++A   ++ ++I E G  ++ 
Sbjct: 73  ERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KIV 113

Query: 362 GIISLSDVFRFLL 374
           GI +LSD+     
Sbjct: 114 GIFTLSDLLEASR 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 292
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTER--------- 54

Query: 293 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
                   D       L              ++      ++     M  +    VR L +
Sbjct: 55  --------DFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 353 VEAGSKRVEGIISLSDVFRFLL 374
           ++ G  +V G++S+ D+ +  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 207
           +     +V  GP DS+     K+  + +  + ++      G   E        D  +   
Sbjct: 9   QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTE-------RDFSRKSY 61

Query: 208 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 267
              K                       ++ E   R  A +    +    +AL+ +  V  
Sbjct: 62  LLDKPV------------------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRH 103

Query: 268 IPIVDDNDSLLDIYSRSDI 286
           +P++DD   ++ + S  D+
Sbjct: 104 LPVLDDGK-VIGLLSIGDL 121

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.2 bits (116), Expect = 7e-08
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND------------SLLDIYS 282
            I     R  +++     L +AL  L+ ++  ++P+VD                  +I  
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 283 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK-VMER 341
               T LA       I      +       Q  N  +     R  +          V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 342 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 374
           +A   + +L ++  G   + G+I   D+ + L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-----AGSCQEILYLASLSDILKCI 206
           R +        LK     +L +    +P++ S G        +                +
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 207 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS 266
               +                +L      + E   R   +  P  ++      + +  + 
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 131

Query: 267 SIPIVDDNDSLLDIYSRSDI 286
            +P++     L+ +    D+
Sbjct: 132 QLPVIRGEGDLIGLIRDFDL 151

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
                +    +L +A   + + D+ ++PI  D+D L  + +  DI               
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 361
              + +                        +  + +++  +    VRR+ ++     R+ 
Sbjct: 69  AGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RLV 110

Query: 362 GIISLSDVFRFL 373
           GI++ +D+ R L
Sbjct: 111 GIVTEADIARHL 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 246 MLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 303
           + + + ++     ++ +   S  P+V   ++  L+    R D+    ++    Q  +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 304 NIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLANPGVRRLVIVEAG 356
           +I    +      P      +   +            P+  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 357 SKRVEGIISLSDVFRFL 373
             R+ GII+  DV + +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 20/137 (14%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 294
           R+ +        +  TASL   L   V+    S   V      + I              
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIV------------- 46

Query: 295 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 354
                  ++    A               +          + +  E++    V RL++ E
Sbjct: 47  ----TTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 355 AGSKRVEGIISLSDVFR 371
                + G+IS +D+ R
Sbjct: 103 DD--EIIGVISATDILR 117

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAK 291
           ++G+   R    +  T++ G  L +L Q  +   P VD    N  L  I        L +
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR 71

Query: 292 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLAN 344
             +  +    E  +        +                +          L K     + 
Sbjct: 72  RISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSL 131

Query: 345 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 375
            G+ R  +   G  ++ G+++L+++   + G
Sbjct: 132 LGLDRAYVTSMG--KLVGVVALAEIQAAIEG 160

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 294
           R+ +     F  +    ++  A+ ++ +  +  + + DDN + + + S   I        
Sbjct: 4   RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------- 55

Query: 295 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 354
                   +          D  P      +          +  V   L+  G+ R  +V+
Sbjct: 56  --------IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD 107

Query: 355 AGSKRVEGIISLSDVFRFLLG 375
               RV GI++L+D+ R+L  
Sbjct: 108 -DPGRVVGIVTLTDLSRYLSR 127

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 301
                +   A L     ++ + ++ S+ +VD N  +  I  R  + A+ K K+      +
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEE 71

Query: 302 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 361
            M                              P+   +  +    +R L +V+     ++
Sbjct: 72  FMTAS-------------------LITIREDSPITGALALMRQFNIRHLPVVD-DKGNLK 111

Query: 362 GIISLSDVFRFL 373
           GIIS+ D+ R +
Sbjct: 112 GIISIRDITRAI 123

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 11/142 (7%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 292
           V  + +       ++     +   +  +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 293 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 352
             +  I  +E+       + +    +               PL + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 353 VEAGSKRVEGIISLSDVFRFLL 374
           V+     + G ++  ++   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 152 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 211
                      ++E+  +IL++ V     +          +++ +  +  +LK    HF 
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR------DNKLVGMIPVMHLLKVSGFHFF 65

Query: 212 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 271
                  +++       +   + +           +     L  AL L++  ++  +P+V
Sbjct: 66  GFIPKEELIRS-----SMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 272 DDNDSLLDIYSRSDI-TALAKDK 293
           D+   ++   +  +I  AL K +
Sbjct: 121 DEKGEIVGDLNSLEILLALWKGR 143

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 294
           ++ +   + F M+  +A++   L  + Q   +   + D       + +        +D  
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN-------KEDLL 54

Query: 295 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 354
              +     N                            D +   +          L +V+
Sbjct: 55  DLDLDSSVFNKVS----------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVD 98

Query: 355 AGSKRVEGIISLSDVFRFLLG 375
               R++G +SL D    L+ 
Sbjct: 99  EE-MRLKGAVSLHDFLEALIE 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 155 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 214
           V   P D +++V     ++    +PI  +               +  I        K   
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRL--------VGIISSRDIDFLKEEE 58

Query: 215 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 274
               + +                        +     +L  A  +L ++    +PIV++N
Sbjct: 59  HDRFLEEIMTKR---------------EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN 103

Query: 275 DSLLDIYSRSDI 286
           D L+ I +R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 247 LRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEM 303
           L P   +        +     IPI D       L+ I S  DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 304 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 363
                               +   +      L +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 364 ISLSDVFR 371
           I+ +D+ +
Sbjct: 110 IARTDLKK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.94
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.91
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.88
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.87
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.86
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.86
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.86
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.85
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.84
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.84
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.83
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.83
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.83
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.82
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.82
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.81
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.81
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.8
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.79
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.79
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.78
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.78
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.77
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.76
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.76
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.76
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.75
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.75
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.73
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.73
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.72
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.72
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.72
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.71
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.7
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.7
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.69
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.69
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.6

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.94  E-value=1.4e-26  Score=197.60  Aligned_cols=169  Identities=23%  Similarity=0.415  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccC
Q 017163           34 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN  113 (376)
Q Consensus        34 ~~~~~~~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~  113 (376)
                      ...+.+.+.+||+.++|||+||.++++++++.+.|+.+|++.|.++++.++||||+++++++|+||..|++.++......
T Consensus         6 ~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~   85 (179)
T d2ooxe1           6 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS   85 (179)
T ss_dssp             HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccc
Confidence            35588999999999999999999999999999999999999999999999999998888899999999999988766543


Q ss_pred             CCC-CCHHHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcce
Q 017163          114 GSN-LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  192 (376)
Q Consensus       114 ~~~-~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~  192 (376)
                      ... ....+........+........          .|.++++++.+++++.+|+.+|.+++++++||+|++.+.+ ..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~  154 (179)
T d2ooxe1          86 SSFPEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEM  154 (179)
T ss_dssp             CSCGGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEE
T ss_pred             ccchhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCc
Confidence            221 1122223333344433333322          6788999999999999999999999999999998643222 237


Q ss_pred             EEEeeehhhHHHHHhhhccCC
Q 017163          193 ILYLASLSDILKCICRHFKHS  213 (376)
Q Consensus       193 l~giit~~dil~~l~~~~~~~  213 (376)
                      ++|++|++||++|++.+++..
T Consensus       155 vvgiiT~~dIlk~l~~~~~~~  175 (179)
T d2ooxe1         155 IVSVLTQYRILKFISMNCKET  175 (179)
T ss_dssp             EEEEEEHHHHHHHHHTTCGGG
T ss_pred             EEEEEeHHHHHHHHHHhhhHh
Confidence            999999999999999887763

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3e-24  Score=179.31  Aligned_cols=154  Identities=34%  Similarity=0.595  Sum_probs=125.0

Q ss_pred             HHHHHhhhCCccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCceeEEeeHHHHHHHHHHhccCCCCCCH
Q 017163           40 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  119 (376)
Q Consensus        40 ~~~~fl~~~~~~d~~p~~~~vi~l~~~~~v~~A~~~l~~~~i~~~PV~d~~~~~~vG~lt~~D~i~il~~~~~~~~~~~~  119 (376)
                      .+.+||+.+|+||+||.+.++|+++.++|+.+|++.|.++++.++||+|++.++++|++|..|++.++........ ...
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~-~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-VQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-TTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccccc-chh
Confidence            4789999999999999999999999999999999999999999999999888889999999999988875543110 011


Q ss_pred             HHHhhhhHHHHHHHHHhhhcccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeeh
Q 017163          120 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  199 (376)
Q Consensus       120 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~  199 (376)
                      ..........+.....            ..+..+++++++++++.+|+++|.++++|++||+|.  ++|   +++|++|+
T Consensus        84 ~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~GivT~  146 (159)
T d2v8qe2          84 YELEEHKIETWREVYL------------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYILTH  146 (159)
T ss_dssp             CCGGGCBHHHHHHHHS------------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEECH
T ss_pred             hhhhhhhcccccceee------------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEEeH
Confidence            1112222233322221            257889999999999999999999999999999964  467   89999999


Q ss_pred             hhHHHHHhhhcc
Q 017163          200 SDILKCICRHFK  211 (376)
Q Consensus       200 ~dil~~l~~~~~  211 (376)
                      +||++|++.+..
T Consensus       147 ~dilk~l~~~~~  158 (159)
T d2v8qe2         147 KRILKFLKLFIT  158 (159)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcC
Confidence            999999987643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.88  E-value=6.5e-22  Score=163.92  Aligned_cols=133  Identities=25%  Similarity=0.568  Sum_probs=116.6

Q ss_pred             ccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccccc
Q 017163          223 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE  302 (376)
Q Consensus       223 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~  302 (376)
                      |++++.+|+|.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++..+........   +
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~---~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---D   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGG---G
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccccc---c
Confidence            67788888886         78999999999999999999999999999999999999999999988765554433   4


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          303 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       303 ~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      .++.+++....       .+..++.+|.+++++.+|++.|.+++++++|||| ++|+++|+||.+||++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            67888775432       4556788999999999999999999999999999 57999999999999999874

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.4e-22  Score=160.75  Aligned_cols=137  Identities=25%  Similarity=0.484  Sum_probs=109.6

Q ss_pred             ccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc
Q 017163          219 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  298 (376)
Q Consensus       219 ~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~  298 (376)
                      ++..|++++++++|.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++..........
T Consensus         3 ~~~~~i~~l~~~~~~---------~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~   73 (140)
T d2nyca1           3 FLKIPIGDLNIITQD---------NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL   73 (140)
T ss_dssp             GGGSBGGGSSCCBCS---------SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             cccCcHHHhCCccCC---------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc
Confidence            456788888766554         89999999999999999999999999999999999999999999997765443322


Q ss_pred             ccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          299 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       299 ~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                         ...+.+.+....       .+..++++|.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++|+.
T Consensus        74 ---~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1          74 ---SLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL  139 (140)
T ss_dssp             ---CSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             ---ccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe-CCCeEEEEEEHHHHHHHHhc
Confidence               244555443322       3446788999999999999999999999999999 58999999999999999863

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.86  E-value=1.2e-21  Score=159.59  Aligned_cols=126  Identities=21%  Similarity=0.240  Sum_probs=107.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc----cccccHHHHHh
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH----LDEMNIHQALQ  310 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~----~~~~~v~~~l~  310 (376)
                      +++++|.++++++++++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........    ..+.++.+   
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   79 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH---
Confidence            56788999999999999999999999999999999999999999999999999876543221110    11234554   


Q ss_pred             cCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          311 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       311 ~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                                +|.+++.+|++++++.+|++.|.+++++++||+|+  |+++|+||.+||++++..
T Consensus        80 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             ----------hhccccccccccchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence                      78889999999999999999999999999999994  899999999999999864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=2.9e-22  Score=159.78  Aligned_cols=121  Identities=16%  Similarity=0.289  Sum_probs=104.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++.........   .....+++       
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~---~~~~~v~~-------   71 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD---PNTATAGE-------   71 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC---TTTSBHHH-------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCC---cccceEEE-------
Confidence            46778999999999999999999999999999999999999999999999997643322221   11345565       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                            +|..++.++.+++++.+|++.|.+++++++||+|+  |+++|+||.+||+++|
T Consensus        72 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 ------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  122 (123)
T ss_dssp             ------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             ------EeeccceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhhC
Confidence                  67788999999999999999999999999999994  8999999999999975

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.7e-21  Score=159.82  Aligned_cols=138  Identities=33%  Similarity=0.586  Sum_probs=116.7

Q ss_pred             cccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc
Q 017163          218 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ  297 (376)
Q Consensus       218 ~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~  297 (376)
                      .++.++++++.++++.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++..+..+....
T Consensus         5 ~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~   75 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN   75 (145)
T ss_dssp             GGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCC
T ss_pred             HHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccc
Confidence            3456788888777654         6899999999999999999999999999999999999999999988766544433


Q ss_pred             cccccccHHHHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          298 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       298 ~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      .   +.++.++.....       .|..++.+|.+++++.+++++|.+++++++||+| ++|+++|+||.+||+++|+.
T Consensus        76 ~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          76 L---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             C---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             h---hhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence            3   356666544322       5667888999999999999999999999999999 57999999999999999974

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5.3e-22  Score=164.93  Aligned_cols=139  Identities=18%  Similarity=0.267  Sum_probs=105.5

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc-ccccc----HHH--
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-LDEMN----IHQ--  307 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-~~~~~----v~~--  307 (376)
                      ++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++............ .....    ...  
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            56677999999999999999999999999999999999999999999999997654422211100 00000    000  


Q ss_pred             ---HHh-c-CCCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          308 ---ALQ-L-GQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       308 ---~l~-~-~~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                         ... . ......+. .+|++++.+|.+++++.++++.|.+++++++||+| ++|+++|+||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe-CCCEEEEEEEHHHHHHHhC
Confidence               000 0 01112222 38889999999999999999999999999999999 5799999999999999885

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=5.3e-21  Score=156.31  Aligned_cols=123  Identities=20%  Similarity=0.288  Sum_probs=107.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|++++.++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++.........   .+.++++       
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~---~~~~v~~-------   73 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKP---DEVPIRL-------   73 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCG---GGSBGGG-------
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcccc---ccccccc-------
Confidence            577889999999999999999999999999999999999999999999999987543222111   1345555       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                            +|.+++++|++++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        74 ------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          74 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccchhhHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHHHHh
Confidence                  7888999999999999999999999999999999 5799999999999999764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=2.1e-20  Score=150.77  Aligned_cols=122  Identities=19%  Similarity=0.354  Sum_probs=106.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      .++++|+++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+..+... .   +.++++       
T Consensus         6 pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~-~---~~~v~~-------   74 (132)
T d2yzia1           6 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-Y---DIPVER-------   74 (132)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC-T---TSBGGG-------
T ss_pred             cHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCc-c---ceeEee-------
Confidence            35566999999999999999999999999999999999999999999999998755433221 1   345665       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|.+++.++++++++.+|++.|.+++++++||+++  |+++|+||.+|+++++..
T Consensus        75 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~--~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          75 ------IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE--GKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             ------TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC
T ss_pred             ------cccccccccCcchHHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence                  78889999999999999999999999999998874  999999999999998753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.83  E-value=1.1e-20  Score=151.27  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=107.0

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      .|+++|.++++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+.+....+...     +.++.+       
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccc-----cchhhh-------
Confidence            57788999999999999999999999999999999997 58999999999999876544322     245554       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|.+++.+|.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.+
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhccccccccchhHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence                  7777899999999999999999999999999999 57999999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=2.2e-20  Score=148.02  Aligned_cols=120  Identities=19%  Similarity=0.243  Sum_probs=105.8

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|++++.++++++|+.+|++.|.+++++++||++ +|+++|++|.+|+++.+..+..    +.+.++.+       
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~-------   68 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   68 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEee-------
Confidence            36778999999999999999999999999999999997 5999999999999986654432    22467777       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                            +|.+++.++++++++.+|++.|.+++++++||+|+  |+++|+||.+|++++.+
T Consensus        69 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          69 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKM  120 (120)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC
T ss_pred             ------ecccccccccchhHHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhcCC
Confidence                  77788999999999999999999999999999874  89999999999999863

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.83  E-value=1.4e-20  Score=150.73  Aligned_cols=115  Identities=12%  Similarity=0.260  Sum_probs=99.3

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCCccc
Q 017163          242 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  321 (376)
Q Consensus       242 ~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i  321 (376)
                      ++++++++++++.+|+++|.+++++++||+| +|+++|++|.+|+++.........   .+.++.+             +
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~---~~~~v~~-------------i   75 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPV---KDTQVKE-------------I   75 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCG---GGSBGGG-------------T
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccc---cceeEee-------------e
Confidence            5789999999999999999999999999997 799999999999987543222111   1345555             7


Q ss_pred             CCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          322 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       322 m~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      |.+++.+|.+++++.+|++.|.+++++++||+|+  |+++|+||.+|+++++++
T Consensus        76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC
T ss_pred             ccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhC
Confidence            8889999999999999999999999999999994  899999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=3.5e-21  Score=153.23  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.++++++++++++.+|+++|.+++++++||+|++|+++|++|.+|++....          +.++.+       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~----------~~~~~~-------   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD----------EEQLAM-------   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C-------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc----------ccchhh-------
Confidence            356778889999999999999999999999999999999999999999999875321          122232       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|..++++|.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++++.
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 ------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTT
T ss_pred             ------ccccceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHHHHHh
Confidence                  7778899999999999999999999999999999 58999999999999998864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=3.2e-20  Score=152.05  Aligned_cols=133  Identities=7%  Similarity=0.130  Sum_probs=104.0

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh--cCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ--LGQ  313 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~--~~~  313 (376)
                      +.++|..+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++......+....     ....+.  ...
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~   80 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP-----KEELIRSSMKR   80 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC------------CCCC
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc-----hhHHHHhhhhh
Confidence            4566889999999999999999999999999999999999999999999999876543332211     011010  000


Q ss_pred             CCCCCcc-cCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          314 DANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       314 ~~~~~~~-im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ....+++ +| .+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++|..
T Consensus        81 ~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd-~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          81 LIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence            0111112 34 4567899999999999999999999999999 57999999999999999864

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=2.9e-20  Score=151.54  Aligned_cols=126  Identities=11%  Similarity=0.158  Sum_probs=108.0

Q ss_pred             cccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc--ccccccccHHHHHhcCC
Q 017163          236 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLGQ  313 (376)
Q Consensus       236 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--~~~~~~~~v~~~l~~~~  313 (376)
                      |+++|+++++++++++|+.+|+++|.+++++++||+|++++++|+++..|+++........  .....+.++++      
T Consensus         4 V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~------   77 (141)
T d3ddja1           4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD------   77 (141)
T ss_dssp             HHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH------
T ss_pred             eHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHH------
Confidence            5667999999999999999999999999999999999999999999999998866432211  11111345555      


Q ss_pred             CCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          314 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       314 ~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                             +|.++++++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||++++.+
T Consensus        78 -------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd-~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          78 -------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             -------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             -------HhCcccccccccchhhHHHHHHHHcCCCEEEEEc-cCCEEEEEEEHHHHHHHHHH
Confidence                   7888999999999999999999999999999999 57999999999999999864

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=4.6e-20  Score=148.70  Aligned_cols=125  Identities=18%  Similarity=0.210  Sum_probs=104.0

Q ss_pred             cccccc--CCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc-ccccccccHHHHHhc
Q 017163          235 RIGEAN--GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIHLDEMNIHQALQL  311 (376)
Q Consensus       235 ~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~-~~~~~~~~v~~~l~~  311 (376)
                      +++++|  .++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++........ .....+.++++    
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~----   78 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   78 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccc----
Confidence            345556  56799999999999999999999999999999999999999999999876532221 11122456666    


Q ss_pred             CCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          312 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       312 ~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                               +|..++.++.+++++.++++.|.+++  .+|||| ++|+++|+||.+||++++..
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd-~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          79 ---------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN-DEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------cccccccccccchhHHHHHHHHHhCC--EEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence                     67778999999999999999998765  599999 57999999999999999863

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.81  E-value=9e-20  Score=145.74  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=95.9

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 017163          240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  317 (376)
Q Consensus       240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~  317 (376)
                      |..+++++++++++.+|+++|.+++++++||+|+  +|+++|++|.+|+......+         .+...          
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~----------   63 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISE----------   63 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTT----------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceee----------
Confidence            4456789999999999999999999999999997  78999999999997633211         11111          


Q ss_pred             CcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          318 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       318 ~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                        ..|..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++++.
T Consensus        64 --~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          64 --HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --eeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence              15567889999999999999999999999999999 5799999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=5.3e-20  Score=147.29  Aligned_cols=116  Identities=15%  Similarity=0.223  Sum_probs=103.5

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  309 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  309 (376)
                      +++.+|+++++++++++++.+|++.|.++     +++.+||+|++|+++|+++.+++....       .   +.++.+  
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~-------~---~~~v~~--   69 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-------D---DTLIAD--   69 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------T---TSBHHH--
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc-------c---cEEhhh--
Confidence            46778999999999999999999999877     478999999999999999999886421       1   357777  


Q ss_pred             hcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          310 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       310 ~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                 +|.+++.++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++++-
T Consensus        70 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD-~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          70 -----------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             -----------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             -----------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe-CCCEEEEEEEHHHHHHHHH
Confidence                       8888999999999999999999999999999999 5799999999999999863

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=6.7e-20  Score=145.44  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=103.9

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.+++.++++++++.+|+++|.+++.+++||+|++|+++|+++.+|+++...          +.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----------~~~v~~-------   64 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN-------   64 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG-------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----------cccccc-------
Confidence            356779999999999999999999999999999999999999999999999975211          234444       


Q ss_pred             CCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                            +|..++.++++++++.+++++|.+++..++|||| ++|+++|+||..|+++++..
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-e~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          65 ------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ------cccCccEEECCCCCHHHHHHHHHhcCceeeeeEC-CCCeEEEEEEHHHHHHHHHH
Confidence                  6777889999999999999999999999999999 58999999999999999864

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.79  E-value=4.7e-19  Score=147.18  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=107.9

Q ss_pred             ccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC--CCcEEEEEeHHHHHHHHhccccccc--cc-ccccHHH
Q 017163          233 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQI--HL-DEMNIHQ  307 (376)
Q Consensus       233 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~--~g~lvGiis~~Di~~~~~~~~~~~~--~~-~~~~v~~  307 (376)
                      .-+++++|.++++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++.++........  .. ...+...
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~   89 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEE   89 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccch
Confidence            34788889999999999999999999999999999999984  4789999999999986653221110  00 0011111


Q ss_pred             HHh----cCCCCCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          308 ALQ----LGQDANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       308 ~l~----~~~~~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ...    ......... .+|.++++++.+++++.+|++.|.+++++++||+|+  |+++|+||.+||++++-|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~--g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          90 IYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--GKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHHHhCC
Confidence            111    111111111 278889999999999999999999999999999984  999999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=3.5e-20  Score=151.68  Aligned_cols=116  Identities=18%  Similarity=0.272  Sum_probs=102.1

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  309 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l  309 (376)
                      +++.+|+++++++++++|+.+|+++|.+++     ++.+||+|++|+++|+++.+|+.....          +.++.+  
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~----------~~~v~~--   69 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP----------RTRVAE--   69 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT----------TCBSTT--
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc----------ccchHH--
Confidence            467889999999999999999999998774     789999999999999999999865211          233333  


Q ss_pred             hcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          310 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       310 ~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                                 +|.+++.++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        70 -----------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd-~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          70 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             -----------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC-SSCBEEEEEEHHHHHHHHH
T ss_pred             -----------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEe-ECCEEEEEEEHHHHHHHHH
Confidence                       7888999999999999999999999999999999 5799999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=2.7e-19  Score=143.88  Aligned_cols=120  Identities=20%  Similarity=0.235  Sum_probs=102.3

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEE--CCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  312 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~  312 (376)
                      +|+++|+++++++++++++.+|++.|.+++++++||+  |++++++|+++..|+++....+.....     ...      
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~-----~~~------   70 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG-----PAM------   70 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTS-----BSG------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccc-----ccc------
Confidence            5778899999999999999999999999999999999  556899999999999987654432211     111      


Q ss_pred             CCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHh
Q 017163          313 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  374 (376)
Q Consensus       313 ~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~  374 (376)
                              .+..++.++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||++++.
T Consensus        71 --------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          71 --------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             --------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             --------cccccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                    3345788999999999999999999999999999 5799999999999998753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.1e-19  Score=148.42  Aligned_cols=134  Identities=14%  Similarity=0.172  Sum_probs=102.8

Q ss_pred             cccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhccccccc-c---cccccHHHH
Q 017163          236 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQI-H---LDEMNIHQA  308 (376)
Q Consensus       236 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~-~---~~~~~v~~~  308 (376)
                      +.|+|.  .+++++..++++.+|+++|.+++++++||+|+ +++++|++|.+|++.....+..... .   .........
T Consensus        15 ~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (159)
T d2v8qe2          15 CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETW   94 (159)
T ss_dssp             GGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHH
T ss_pred             EEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhcccc
Confidence            444463  46899999999999999999999999999974 6899999999999886653222110 0   000111110


Q ss_pred             HhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          309 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       309 l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      -....      ..|..++++|.+++++.+|+++|.++++|++||+|+++|+++|+||.+||+++|..
T Consensus        95 ~~~~~------~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          95 REVYL------QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHHS------SSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             cceee------eeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            00000      16778899999999999999999999999999998667899999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=5.4e-19  Score=146.43  Aligned_cols=138  Identities=13%  Similarity=0.164  Sum_probs=104.9

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcc------c
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP------I  219 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~------~  219 (376)
                      +..+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++.+............      .
T Consensus         6 v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T d2yzqa1           6 IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW   79 (156)
T ss_dssp             STTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC---------------
T ss_pred             HHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhh
Confidence            34589999999999999999999999999999999975   67   899999999998765432211100000      0


Q ss_pred             c-----ccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          220 L-----QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       220 ~-----~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                      .     ...............++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|++||++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            0     000111111122346788999999999999999999999999999999999999999999999999874

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=2.2e-19  Score=145.15  Aligned_cols=130  Identities=9%  Similarity=0.138  Sum_probs=103.2

Q ss_pred             ccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 017163          235 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  314 (376)
Q Consensus       235 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~  314 (376)
                      +++++|.++++++++++++.+|+++|.+++++++||+|+  +++|+++..|+++.+.........   ......+..   
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---   73 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCS---QGDLYHIST---   73 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CC---HHHHHHHHT---
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchh---hhhcccccc---
Confidence            466779889999999999999999999999999999964  799999999999865432221110   000111100   


Q ss_pred             CCCCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          315 ANPSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       315 ~~~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                        .+. .+|..++.+|.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        74 --~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          74 --TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             --SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGG
T ss_pred             --CCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe-CCCEEEEEEEHHHHHHHHHH
Confidence              112 27888999999999999999999999999999999 57999999999999998754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=1.4e-18  Score=138.85  Aligned_cols=119  Identities=21%  Similarity=0.294  Sum_probs=103.5

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccc
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  225 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~  225 (376)
                      ++++|.++++++++++++.+|+++|.+++++++||+++    +   +++|++|..|+++++.....        ...+  
T Consensus         6 V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~----~---~~~Givt~~dl~~~~~~~~~--------~~~~--   68 (127)
T d2ef7a1           6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LETK--   68 (127)
T ss_dssp             GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTCB--
T ss_pred             HHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc----c---chhhhcchhHHHHHHHhhcc--------ccch--
Confidence            44588999999999999999999999999999999964    5   79999999999998764322        1222  


Q ss_pred             cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          226 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       226 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                                +.++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.+.
T Consensus        69 ----------v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          69 ----------AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             ----------GGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----------hhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence                      34447788999999999999999999999999999999999999999999999765

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=4.4e-19  Score=141.85  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=101.9

Q ss_pred             CCCCCCCCCceEeCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccc
Q 017163          145 GNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  219 (376)
Q Consensus       145 ~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~  219 (376)
                      ++|.+|.++++++++++++.+|++.|.+++     ++.+||+|+   ++   +++|+++..+++..             .
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~~-------------~   62 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN-------------D   62 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS-------------C
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeeccccc-------------c
Confidence            456689999999999999999999998774     789999976   67   89999999888641             0


Q ss_pred             cccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163          220 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       220 ~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~  293 (376)
                      ..            ..++++|.++++++++++++.+|+++|.+++++++||||++|+++|+||.+|++.++.+.
T Consensus        63 ~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          63 DD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             TT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             cc------------EEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            11            245566999999999999999999999999999999999999999999999999977543

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=8.1e-19  Score=143.43  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=103.1

Q ss_pred             CCCCCCCCCCceEeCCCCCHHHHHHHHHhCC-----CceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcc
Q 017163          144 DGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP  218 (376)
Q Consensus       144 ~~~~~~~~~~~v~v~~~~sl~~a~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~  218 (376)
                      |++|++|.++++++.+++|+.+|+++|.+++     ++.+||+|+   +|   +++|+++.+|++...            
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~dl~~~~------------   62 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVAD------------   62 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TC---BBCCBCBHHHHTTSC------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CC---CEecccchhhhhhcc------------
Confidence            5678899999999999999999999998874     789999976   67   899999999986521            


Q ss_pred             ccccccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          219 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       219 ~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                       ..            ..+.++|.+++.++.+++++.+|++.|.+++++++||||++|+++|+||.+|+++++.+
T Consensus        63 -~~------------~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          63 -PR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             -TT------------CBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             -cc------------cchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence             11            23445588899999999999999999999999999999999999999999999987654

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=4.5e-18  Score=138.98  Aligned_cols=135  Identities=13%  Similarity=0.182  Sum_probs=104.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|..+++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|..|+++++....................+
T Consensus         8 ~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (145)
T d1o50a3           8 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   81 (145)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             HhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhc
Confidence            368889999999999999999999999999999986   57   899999999999988765433221111111111111


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  293 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~~  293 (376)
                          ....+.+.|. +++++.+++++.+|+++|.+++++++||||++|+++|+||.+|+++.+..+
T Consensus        82 ----~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          82 ----IAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             ----SSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ----cccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence                1122344443 567899999999999999999999999999999999999999999976543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.76  E-value=3e-18  Score=145.14  Aligned_cols=137  Identities=12%  Similarity=0.193  Sum_probs=101.8

Q ss_pred             cccccC--CCceEecCCCCHHHHHHHHHhCCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccc-cccc-----cccccHH
Q 017163          236 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAY-AQIH-----LDEMNIH  306 (376)
Q Consensus       236 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~-~~~~-----~~~~~v~  306 (376)
                      +.++|.  .+++++.+++++.+|++.|.+++++++||+|+ +++++|++|..|+++.+..... ....     +......
T Consensus        22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (179)
T d2ooxe1          22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLL  101 (179)
T ss_dssp             HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHH
T ss_pred             eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchh
Confidence            344564  46899999999999999999999999999984 6899999999999986542111 1000     0001111


Q ss_pred             HHHhcCCCCCCCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCC----CCeEEEEEeHHHHHHHHhcC
Q 017163          307 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG----SKRVEGIISLSDVFRFLLGV  376 (376)
Q Consensus       307 ~~l~~~~~~~~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~----~~~~~GvIs~~Dil~~l~~~  376 (376)
                      .......    ....|.+++++|.++++|.+|++.|.++++|++||+|++    +++++|+||.+||+++|..|
T Consensus       102 ~~~~~~~----~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         102 GLREVER----KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHHHHH----HTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             hhcccce----eeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            1000000    012678899999999999999999999999999999852    23799999999999999754

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=4.9e-19  Score=140.79  Aligned_cols=117  Identities=15%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++..+....              
T Consensus         5 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~~--------------   64 (123)
T d1y5ha3           5 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLDP--------------   64 (123)
T ss_dssp             HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCCT--------------
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCCc--------------
Confidence            367888999999999999999999999999999976   56   8999999999987554332110              


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                          ....++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus        65 ----~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          65 ----NTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             ----TTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ----ccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence                11234566888999999999999999999999999999998 5899999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.75  E-value=4e-20  Score=146.48  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             cCCCceEecCCCCHHHHHHHHHhCCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 017163          240 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  316 (376)
Q Consensus       240 m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  316 (376)
                      |.++++++++++++.+|+++|.+++++++||+|+   +|+++|++|.+|+....... .      +.++.+.        
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-~------~~~~~~~--------   66 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-H------DRFLEEI--------   66 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----------------------------C--------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-c------CceeEEE--------
Confidence            3446679999999999999999999999999985   67999999999986433211 1      1222220        


Q ss_pred             CCcccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHH
Q 017163          317 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  373 (376)
Q Consensus       317 ~~~~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l  373 (376)
                         ..+..++.++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||++..
T Consensus        67 ---~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd-~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          67 ---MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVN-ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ---CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE-TTTEEEEEECHHHHHHHH
T ss_pred             ---EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEc-CCCEEEEEEEHHHhhhcc
Confidence               13455788999999999999999999999999999 579999999999999863

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=2.6e-18  Score=139.47  Aligned_cols=126  Identities=18%  Similarity=0.260  Sum_probs=104.1

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++..........        ...
T Consensus         6 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~~--------~~~   71 (139)
T d2o16a3           6 DMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQG--------DSL   71 (139)
T ss_dssp             GTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC----------------
T ss_pred             HhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhcc--------ccc
Confidence            478889999999999999999999999999999976   57   8999999999999887654332110        000


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                         .....++++|.+++.++++++++.+|+++|.+++++++||+| +|+++|++|++||++.+.
T Consensus        72 ---~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          72 ---AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred             ---ccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence               111245666999999999999999999999999999999998 589999999999998664

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=4.9e-18  Score=138.37  Aligned_cols=120  Identities=13%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.+++.++++++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++.+......      ...      
T Consensus         7 dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~------~~~------   68 (142)
T d1pvma4           7 KIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------PDE------   68 (142)
T ss_dssp             GTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------GGG------
T ss_pred             HhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc------ccc------
Confidence            478899999999999999999999999999999975   56   899999999998866432211      011      


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                            ..++++|.++++++++++++.+|+++|.+++++++||+|++|+++|++|..||++.+.
T Consensus        69 ------~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          69 ------VPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------SBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ------cccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence                  1345568889999999999999999999999999999999999999999999988543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=2.6e-17  Score=131.18  Aligned_cols=114  Identities=14%  Similarity=0.199  Sum_probs=94.4

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      ..+++++.|++++.+|+++|.+++++++||+|+ ..++   +++|++|.+|+.+....            ..+.      
T Consensus         4 i~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~------------~~~~------   61 (126)
T d1zfja4           4 IIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDY------------NAPI------   61 (126)
T ss_dssp             SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCS------------SSBT------
T ss_pred             EeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhcc------------CCce------
Confidence            346789999999999999999999999999964 2245   89999999999763211            1111      


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                           ....|..+++++.+++++.+|+++|.+++++++||||++|+++|+||++|+++...
T Consensus        62 -----~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 -----SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             -----TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                 11235668899999999999999999999999999999999999999999998654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.3e-17  Score=134.17  Aligned_cols=119  Identities=16%  Similarity=0.260  Sum_probs=102.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++..+...       ...     
T Consensus         9 ~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~~-------~~~-----   70 (132)
T d2yzia1           9 VYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGLP-------YDI-----   70 (132)
T ss_dssp             GTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCCC-------TTS-----
T ss_pred             HHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccCc-------cce-----
Confidence            478899999999999999999999999999999976   56   899999999999876543211       122     


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                             .++++|.+++.++++++++.+|++.|.+++++++||++ +|+++|++|.+|+++...+
T Consensus        71 -------~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          71 -------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             -------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             -------eEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                   34555888999999999999999999999999999874 7999999999999997653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=2.3e-18  Score=139.08  Aligned_cols=127  Identities=18%  Similarity=0.126  Sum_probs=103.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.++++++.+++++.+|++.|.+++++++||+|+        +++|+++..++++++........         ....
T Consensus         5 ~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--------~lvg~~~~~~~~~~~~~~~~~~~---------~~~~   67 (135)
T d3ddja2           5 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCKDSC---------SQGD   67 (135)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--------SEEEEEEHHHHHGGGTTCC---C---------CHHH
T ss_pred             EEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--------ceeceeeccchhhhhccccccch---------hhhh
Confidence            477888999999999999999999999999999954        69999999999987754322211         0000


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      ........++++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++++.
T Consensus        68 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          68 LYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            0011223567779999999999999999999999999999999999999999999999998664

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.1e-17  Score=135.99  Aligned_cols=125  Identities=18%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ..+.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++........      ...+...
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~~   80 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGEA   80 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----C------CSBHHHH
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHHHhhcccccc------ccchhhh
Confidence            357789999999999999999999999999999976   67   89999999999998876543211      1111111


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                            ......+..+++++.+++++.+|+++|.+++++++||||++|+++|+||.+|+++.+
T Consensus        81 ------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          81 ------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ------hhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                  011222456788999999999999999999999999999999999999999999865

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=9e-18  Score=136.49  Aligned_cols=124  Identities=10%  Similarity=0.162  Sum_probs=104.7

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++++++|+.+|+++|.+++++++||++.   ++   +++|+++..|+++++......... .....       
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~-------   72 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYG-------   72 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHT-------
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccC-------
Confidence            57888999999999999999999999999999976   56   799999999999988654332110 00111       


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                           ..++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+.
T Consensus        73 -----~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          73 -----KVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             -----CBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -----CCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence                 2455668889999999999999999999999999999999999999999999998664

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=3.5e-17  Score=129.49  Aligned_cols=113  Identities=14%  Similarity=0.159  Sum_probs=99.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCccccccccccc
Q 017163          148 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  227 (376)
Q Consensus       148 ~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l  227 (376)
                      ++|.+++.++.+++++.+|+++|.+++.+.+||+|+   ++   +++|+++..|++++.             ...     
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~---~~~Gii~~~dl~~~~-------------~~~-----   60 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LDS-----   60 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TTS-----
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC---Cc---eeEEEeehhhhhhhh-------------ccc-----
Confidence            468889999999999999999999999999999975   67   899999999997521             112     


Q ss_pred             cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          228 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       228 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                             ++.++|..++.++++++++.+|+++|.++++.++||+|++|+++|+||..|+++.+.
T Consensus        61 -------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          61 -------SVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             -------BSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             -------cccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence                   344557788999999999999999999999999999999999999999999998664

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.72  E-value=4.6e-17  Score=129.89  Aligned_cols=114  Identities=17%  Similarity=0.275  Sum_probs=96.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      .++++++.+++++.+|+++|.+++++++||+++    +   +++|++|..|+++.+......      ...         
T Consensus        12 ~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~----~---~~vGiit~~Di~~~~~~~~~~------~~~---------   69 (127)
T d2rc3a1          12 GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDKP------VKD---------   69 (127)
T ss_dssp             CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSSC------GGG---------
T ss_pred             CCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEccchhhhhhhhccc------ccc---------
Confidence            357899999999999999999999999999963    5   899999999998865432111      111         


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                         ..+.++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++..
T Consensus        70 ---~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          70 ---TQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ---SBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---eeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence               235566889999999999999999999999999999998 69999999999998854

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.71  E-value=5.4e-17  Score=134.47  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=108.4

Q ss_pred             CCCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcc-cccccc
Q 017163          146 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP-ILQQPV  224 (376)
Q Consensus       146 ~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~-~~~~~i  224 (376)
                      ++++|.++++++++++++.+|+++|.+++++++||+++ .+++   .++|+++..|+++++............ ......
T Consensus        13 V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3          13 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             HHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccccchhhccccc
Confidence            45689999999999999999999999999999999974 2345   799999999999988765433211000 000000


Q ss_pred             -----ccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          225 -----SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       225 -----~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                           ...........+.++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                 000011122345677889999999999999999999999999999997 699999999999998753

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.8e-17  Score=137.82  Aligned_cols=129  Identities=15%  Similarity=0.227  Sum_probs=95.1

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEE--CCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC------CCCC
Q 017163          245 AMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG------QDAN  316 (376)
Q Consensus       245 ~~v~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~------~~~~  316 (376)
                      +++.++.++.+|.++|.+++++++||+  +++++++|++|.+|++..+.................+....      ....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            456678899999999999999999999  45789999999999998765332221110001100000000      0000


Q ss_pred             CCc-ccCCCcceEecCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEeHHHHHHHHhc
Q 017163          317 PSL-GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  375 (376)
Q Consensus       317 ~~~-~im~~~~~~~~~~~tl~~a~~~m~~~~~~~l~VVd~~~~~~~GvIs~~Dil~~l~~  375 (376)
                      ... ++|.+++.+|.+++++.+|+++|.+++++++||+|+  |+++|+||++||++++.+
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            111 278889999999999999999999999999999884  899999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=3.3e-17  Score=129.44  Aligned_cols=114  Identities=17%  Similarity=0.222  Sum_probs=99.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++++++|+.+|++.|.+++++.+||.++    |   +++|++|.+|+++++......       ...      
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~----~---~~~Gvit~~Di~~~l~~~~~~-------~~~------   64 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDDL-------AEV------   64 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCCT-------TTS------
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC----C---cEEEEEEeeeccccccccccc-------cce------
Confidence            68889999999999999999999999999999853    5   899999999999987653221       122      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                            .+.++|++++.++++++++.+|+++|.+++++++||++ +|+++|++|.+|++++
T Consensus        65 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          65 ------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ------BHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ------eEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                  34555888999999999999999999999999999985 7999999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.7e-17  Score=133.44  Aligned_cols=119  Identities=9%  Similarity=0.113  Sum_probs=99.6

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      ..+++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++........       ..       
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~---~~vGiit~~di~~~~~~~~~~~~-------~~-------   70 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERIEF-------EK-------   70 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSBCG-------GG-------
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---cc---ccccEEEcchhHHHhhccccccc-------cc-------
Confidence            567899999999999999999999999999975   57   89999999999998865432211       00       


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                      .+..+++++|.+++.++.+++++.+++++|.+++  .+||+|++|+++|+||.+|+++.+.
T Consensus        71 ~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          71 LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cccccccccccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHH
Confidence            1123456678889999999999999999998765  5999999999999999999998654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=1.2e-16  Score=131.67  Aligned_cols=123  Identities=22%  Similarity=0.201  Sum_probs=100.6

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      .++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++......      ....++.+.-  
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~~--   76 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEAL--   76 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHHH--
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhhhe--
Confidence            468999999999999999999999999999976   56   899999999999887643221      1122332220  


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                          .....+..++.++.+++++.+|+++|.+++++++||||++|+++|++|++|+++.+.
T Consensus        77 ----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          77 ----LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             ----HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ----eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                122335567889999999999999999999999999999999999999999998654

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=2.4e-17  Score=130.66  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=82.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccc
Q 017163          149 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  228 (376)
Q Consensus       149 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~  228 (376)
                      +|.++++++++++++.+|+++|.+++++++||+|+   +|   +++|++|.+|++....             ..      
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~~-------------~~------   60 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------EE------   60 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhhc-------------cc------
Confidence            56778999999999999999999999999999976   67   8999999999876211             11      


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  290 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~  290 (376)
                            .+.++|.++++++++++++.+|+++|.+++++++||+|++|+++|++|++|+++..
T Consensus        61 ------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             ------chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                  24455888899999999999999999999999999999999999999999998743

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.69  E-value=6.3e-17  Score=129.75  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             CCCCCCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccc
Q 017163          147 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  226 (376)
Q Consensus       147 ~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~  226 (376)
                      +++|.++++++++++++.+|+++|.+++++++||++.+. .+   +++|+++..|+++++.......        .    
T Consensus         4 ~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~~--------~----   67 (131)
T d2riha1           4 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDLD--------G----   67 (131)
T ss_dssp             GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCTT--------S----
T ss_pred             HHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeeccccccccccccc--------c----
Confidence            347899999999999999999999999999999996422 34   7999999999999876543221        0    


Q ss_pred             ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          227 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       227 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                               ....+..++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.
T Consensus        68 ---------~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          68 ---------PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ---------BSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ---------ccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                     111134567789999999999999999999999999999999999999999873

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.6e-16  Score=129.63  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=100.5

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      .++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++......      ....++...   
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~---   83 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA---   83 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH---
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhc---
Confidence            457899999999999999999999999999976   67   899999999999877543211      112222221   


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  291 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~  291 (376)
                         ......|..++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++.+.
T Consensus        84 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ---LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               1233446778899999999999999999999999999999999999999999998653

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=1.8e-18  Score=136.80  Aligned_cols=116  Identities=19%  Similarity=0.240  Sum_probs=59.9

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcccccccccccccc
Q 017163          151 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  230 (376)
Q Consensus       151 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i~  230 (376)
                      ..+++++.|++++.+|+++|.+++++++||+++....+   +++|++|.+|+.......          ...+....   
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~---   66 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI---   66 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C---
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE---
Confidence            34567899999999999999999999999997533355   899999999985422111          11122221   


Q ss_pred             ccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHH
Q 017163          231 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  289 (376)
Q Consensus       231 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~  289 (376)
                             ..+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++.
T Consensus        67 -------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 -------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             -------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                   1135578999999999999999999999999999999999999999999874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.9e-15  Score=122.57  Aligned_cols=134  Identities=10%  Similarity=0.106  Sum_probs=101.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCceeEEEecCCCCCCcceEEEeeehhhHHHHHhhhccCCCCCcc----cc-cccccccc
Q 017163          154 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP----IL-QQPVSSIQ  228 (376)
Q Consensus       154 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~~~~~g~~~~l~giit~~dil~~l~~~~~~~~~~~~----~~-~~~i~~l~  228 (376)
                      .+.+.+++++.+|+++|.+++++++||+++ .+++   +++|++|.+|+++++............    .+ ........
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPP   94 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCT
T ss_pred             EEECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhh
Confidence            356678889999999999999999999963 2356   899999999999988654322211000    00 00111111


Q ss_pred             ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 017163          229 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  292 (376)
Q Consensus       229 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiis~~Di~~~~~~  292 (376)
                      .......++++|.+++.++.+++++.+++++|.+++.+++||+| +|+++|+||++|+++.+.+
T Consensus        95 ~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          95 YTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             TCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            22233467889999999999999999999999999999999986 7999999999999997653