Citrus Sinensis ID: 017166

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSKLSSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF
Secondary Structure (PSIPRED)
cccEEEEEEccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccccccccccccccccccEEEEEEcccHHHHcHHHHHHHHHHHHcccEEHHHHHccccEEEEEcHHHHHHHHHccHHccccccHHHccccEEEccccccccccccHHHccccccccccccccccccccccHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcEcccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHccHHcEEEHHHHHHHHHcccccccEEEEccccHHHHHHccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MPMGIELHSVKVIsggwsvaakpcdtCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVceqapaavTCKADAAALCVTcdndihsanplarrherlpiepffdsadsiVKSSAfnflvpsdqnggseftgasehdgvdsaswlipnskpgienagemksgdmffidpfidlndfdypnsfqnhhsagmdsvvpvqttkpepipaqaaapiplinnencfdidfcrsklssfnyqsqsvssssldvgvvpdgnsmsdisytfgrnmstgsgadpsvtvsapganqasqlcgIDREARVLRYREKRKNRKFEKTIRYHSRKayaetrprIKGRFAKRAEADSEVDRLYKSAASAAGayladsqygvvpsf
Flexible Loop (DISEMBL)
MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSKLSSFNYqsqsvssssldvgvvpdGNSMSDISYTFGRNMSTGSGADPSVTVSapganqasqlcgidrearvlryrekrknrkfektiryhsrkayaetrprikgrfakraeadseVDRLYKSAASAAgayladsqygvvpsf
Low Complexity Region (SEG)
MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEpipaqaaapipLINNENCFDIDFCRSKLssfnyqsqsvssssLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKsaasaagayladsQYGVVPSF
Disordered region (IsUnstruct)
*****ELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLV*****************************************GDMFFIDPFIDLNDFDYPNSF**************************AAPIPLINNENCFDIDFCRSKLSSF*********************************************************CGIDREARVLRY*******************************************************Y************
Disordered Region (DISOPRED)
**********************PCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPI************NENCFDIDFCRSKLSSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMS************************************KRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE*******************LADSQYGVVPSF
Disordered Region (DISEMBL)
MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSKLSSF************DVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFA*********DRLYKSAASAAGAYLADSQYGVVPSF
Disordered Region (DISPRO)
****IEL**VKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNF***********************A*WL*PNS**GIENAGEMKSGDMFFIDPFIDLNDFDYPNS*****SAGMDSVVPVQTTKPEPIPAQ*AAPIPLINNENCFDIDFCRSKLSSFNYQSQSVSSSSLDVGVVPDGNSMS***************ADP***V**************D*EARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA*S*V*RLYKS***A*GA*L******VVPSF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSKLSSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q9FHH8	355	Zinc finger protein CONST	yes	no	0.901	0.954	0.543	6e-99
Q940T9	362	Zinc finger protein CONST	no	no	0.864	0.897	0.478	3e-76
Q9SK53	294	Zinc finger protein CONST	no	no	0.699	0.894	0.468	8e-68
Q96502	347	Zinc finger protein CONST	no	no	0.869	0.942	0.416	5e-63
O50055	355	Zinc finger protein CONST	no	no	0.890	0.943	0.404	6e-58
Q39057	373	Zinc finger protein CONST	no	no	0.885	0.892	0.373	1e-55
Q9FDX8	395	Zinc finger protein HD1 O	no	no	0.204	0.194	0.575	5e-15
Q9C7E8	433	Zinc finger protein CONST	no	no	0.231	0.200	0.4	3e-12
O22800	402	Zinc finger protein CONST	no	no	0.228	0.213	0.393	5e-12
O82256	332	Zinc finger protein CONST	no	no	0.223	0.253	0.370	4e-11

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score =  361 bits (926), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 212/390 (54%), Positives = 259/390 (66%), Gaps = 51/390 (13%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVW 62
           MG  L S+K ISGGW  AA+ CD CK+  AAVFCRVDSAFLC+ CD RIH+   +H RVW
Sbjct: 1   MGFGLESIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS-FTRHERVW 59

Query: 63  MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADS----IVK 118
           +CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++    I  
Sbjct: 60  VCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISA 119

Query: 119 SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNS-------KPGIENAGEMKSGDMF 171
           SS F  L  S     +     ++  G+    WL+PN        + G EN   MK    F
Sbjct: 120 SSTFGILGSSTTVDLTAVPVMADDLGL--CPWLLPNDFNEPAKIEIGTEN---MKGSSDF 174

Query: 172 FIDPFIDLNDFDYPNSFQNHH-SAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDID 230
               F  L DF++PNSF +H  +AG DS+VPVQ TK E        P+PL NN++CFDID
Sbjct: 175 MFSDFDRLIDFEFPNSFNHHQNNAGGDSLVPVQ-TKTE--------PLPLTNNDHCFDID 225

Query: 231 FCRSKLSSFNY----QSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVS 286
           FCRSKLS+F Y     S SVS+SS++ GVVPDGN+ + ++ +   + +TG          
Sbjct: 226 FCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTG---------- 275

Query: 287 APGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
             G +QAS +   DREARVLRYREKRKNRKFEKTIRY SRKAYAE+RPRIKGRFAKR E 
Sbjct: 276 --GDHQASSM---DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE- 329

Query: 347 DSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
            +E D ++ S   A+ A+   +QYGVVP+F
Sbjct: 330 -TENDDIFLSHVYASAAH---AQYGVVPTF 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 189/395 (47%), Positives = 243/395 (61%), Gaps = 70/395 (17%)

Query: 19  VAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVT 75
           +A+K CD+CK+A AA++CR D+AFLCL+CD ++H      ++HARVWMCEVCEQAPA VT
Sbjct: 1   MASKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVT 60

Query: 76  CKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD--SADSIVKSSAFNFL---VPSDQ 130
           CKADAAALCVTCD DIHSANPLARRHER+P+ PF+D  S+D  VK +A NFL     SD 
Sbjct: 61  CKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDI 120

Query: 131 NGGSEFTGASEHDGVDSASW-LIPNSK------------------PGIENAGEMKSGDMF 171
           +G     G+ E +  ++ASW L+PN K                  PG  ++ EM +G  +
Sbjct: 121 DG----NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPG--DSPEMNTGQQY 174

Query: 172 FI---DPFIDLN--DFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENC 226
                DP++DL+  + D        +S+G D VVPV+              IP + NENC
Sbjct: 175 LFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVE---------NRTVRIPTV-NENC 224

Query: 227 FDIDFCRSKL-----SSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADP 281
           F++DF            +N  S SVSSSS++VGVVPDG S++D+SY +G   +  SGAD 
Sbjct: 225 FEMDFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPAT--SGAD- 281

Query: 282 SVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFA 341
                 PG  +A  L   +REARV+RYREKRKNRKFEKTIRY SRKAYAE RPRIKGRFA
Sbjct: 282 ------PGTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFA 335

Query: 342 KRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           KR + +   D          G +   S +G+VP+F
Sbjct: 336 KRTDTNESND-----VVGHGGIF---SGFGLVPTF 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score =  257 bits (657), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 157/335 (46%), Positives = 203/335 (60%), Gaps = 72/335 (21%)

Query: 20  AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTC 76
           +++ CD+CK+ AA +FCR D+AFLC +CD +IH      ++H RVW+CEVCEQAPA VTC
Sbjct: 4   SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63

Query: 77  KADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSAD-SIVKSSAFNFLVPSDQNGGSE 135
           KADAAALCVTCD DIHSANPL+RRHER+PI PF+D+   +   SS+ NF+   D++GG  
Sbjct: 64  KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---DEDGGDV 120

Query: 136 FTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYPN--SFQNHHS 193
                      +ASWL+  +K GIE        ++F        +D DYP        +S
Sbjct: 121 -----------TASWLL--AKEGIEIT------NLF--------SDLDYPKIEVTSEENS 153

Query: 194 AGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSKLSS--FNYQSQSVSSSSL 251
           +G D VVPVQ                L  NE+ F+ D   SK+S   FN+ +Q+VS+ ++
Sbjct: 154 SGNDGVVPVQNK--------------LFLNEDYFNFDLSASKISQQGFNFINQTVSTRTI 199

Query: 252 DVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDREARVLRYREK 311
           DV +VP+               S G  A+ + T +      A QL   +REARVLRYREK
Sbjct: 200 DVPLVPE---------------SGGVTAEMTNTETP-----AVQLSPAEREARVLRYREK 239

Query: 312 RKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
           RKNRKFEKTIRY SRKAYAE RPRIKGRFAKR ++
Sbjct: 240 RKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDS 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score =  241 bits (616), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 156/375 (41%), Positives = 219/375 (58%), Gaps = 48/375 (12%)

Query: 14  SGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQA 70
           SG W   A+ CDTC++AA  V+C  DSA+LC  CD R+H      ++H RV +C+ CE A
Sbjct: 9   SGTW---ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESA 65

Query: 71  PAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQ 130
           PAA  CKADAA+LC  CD +IHSANPLARRH+R+PI P   SA+S         + PS+ 
Sbjct: 66  PAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPL--SANSCSS------MAPSET 117

Query: 131 NGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFD--YPNSF 188
           +  ++       D  + ASWL+PN  PG +N G   +G +F ++ ++DL D+     N F
Sbjct: 118 DADND------EDDREVASWLLPN--PG-KNIGNQNNGFLFGVE-YLDLVDYSSSMDNQF 167

Query: 189 QNHH------SAGMDSVVPVQTTKPEPIPAQAAAPIPL-INNENCFDIDFCRSKLSSFNY 241
           +++       S G D VVP+Q  +      Q+     L IN        +  + L   N+
Sbjct: 168 EDNQYTHYQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNH 227

Query: 242 QSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGIDR 301
              S S SS+D+ VVP+ ++ SDI+    R  +T    D    +S P      QL  ++R
Sbjct: 228 ---SASVSSMDISVVPE-STASDITVQHPR--TTKETID---QLSGPPTQVVQQLTPMER 278

Query: 302 EARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKSAASAA 361
           EARVLRYREK+K RKF+KTIRY SRKAYAE RPRIKGRFAKR E ++E + ++ +     
Sbjct: 279 EARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFST----- 333

Query: 362 GAYLADSQYGVVPSF 376
            + ++++ YG+VPSF
Sbjct: 334 -SLMSETGYGIVPSF 347

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score =  224 bits (572), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 154/381 (40%), Positives = 207/381 (54%), Gaps = 46/381 (12%)

Query: 13  ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQ 69
           +   W   A+ CDTC++AA  V+CR DSA+LC +CD ++H      ++H RV +C+ CE+
Sbjct: 4   VESNW---AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCER 60

Query: 70  APAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPS 128
           APAA  CKADAA+LC TCD++IHSANPLARRH+R+PI P  + S  S   + +    V  
Sbjct: 61  APAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTD 120

Query: 129 DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF------ 182
            +N         + D  ++ASWL+PNS     N      GD      F++L D+      
Sbjct: 121 PENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGD-----EFLNLVDYSSSDKQ 175

Query: 183 --DYPNSFQ-----NHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFCRSK 235
             D  N +Q        S G D VVP+Q    + +  Q      L  + NC      RS 
Sbjct: 176 FTDQSNQYQLDCNVPQRSYGEDGVVPLQIEVSKGM-YQEQQNFQL--SINCGSWGALRSS 232

Query: 236 LSSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQ 295
             S    S  V+ SS+D+GVVP+  + SD + +  R+        P      P    A  
Sbjct: 233 NGSL---SHMVNVSSMDLGVVPESTT-SDATVSNPRS--------PKAVTDQPPYPPAQM 280

Query: 296 LCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYK 355
           L   DREARVLRYREK+K RKFEKTIRY SRKAYAE RPRIKGRFAK+ + D E ++ + 
Sbjct: 281 LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFS 340

Query: 356 SAASAAGAYLADSQYGVVPSF 376
           +  +       D+ YG+VPSF
Sbjct: 341 TMIT------FDTGYGIVPSF 355

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/396 (37%), Positives = 203/396 (51%), Gaps = 63/396 (15%)

Query: 13  ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHN---CMNKHARVWMCEVCEQ 69
           I  G +  A+PCDTC++ A  V+C  DSA+LC++CD ++H+     ++H RV +CE CE+
Sbjct: 9   IGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCER 68

Query: 70  APAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF----FDSADSIVKSSAFNFL 125
           APAA  C+AD A+LC  CD+++HSANPLARRH+R+PI P     F S  +    S     
Sbjct: 69  APAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMT 128

Query: 126 VPS-----DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLN 180
            P      DQ  G E     + D  + ASWL PNS    +     ++  + F D +++L 
Sbjct: 129 DPEKRLVVDQEEGEE----GDKDAKEVASWLFPNS----DKNNNNQNNGLLFSDEYLNLV 180

Query: 181 DF----------DYPNSFQN----HHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENC 226
           D+          +Y    QN      S G D VVP++  +               N +N 
Sbjct: 181 DYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLEESRGHQCH--------NQQNF 232

Query: 227 -FDIDFCRSKL-----SSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGAD 280
            F+I +  S        S N+   +   SS++ GVVP+    S    T   +  T  G  
Sbjct: 233 QFNIKYGSSGTHYNDNGSINH---NAYISSMETGVVPE----STACVTTASHPRTPKGTV 285

Query: 281 PSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRF 340
                 A      +QL  +DREARVLRYREKRK RKFEKTIRY SRKAYAE RPR+ GRF
Sbjct: 286 EQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRF 345

Query: 341 AKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           AKR E ++E               + ++ YG+VPSF
Sbjct: 346 AKR-EIEAEEQGF-------NTMLMYNTGYGIVPSF 373

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 61/80 (76%), Gaps = 3/80 (3%)

Query: 21  AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
           A+PCD C+AA + V+CR D+A+LC +CD R+H      ++H RV +CE CE+APAA+ C+
Sbjct: 32  ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91

Query: 78  ADAAALCVTCDNDIHSANPL 97
           ADAAALCV CD  +HSANPL
Sbjct: 92  ADAAALCVACDVQVHSANPL 111

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)

Query: 23  PCDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAVTCKAD 79
           PCD C    A +FCR D+A LCL CD ++H  N ++ KH R  +C+ C   P +V C  D
Sbjct: 8   PCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTD 67

Query: 80  AAALCVTCDNDIHSANPLARRHERLPIEPF 109
              LC  CD D+H +  ++  H R  +E F
Sbjct: 68  NLILCQECDWDVHGSCSVSDAHVRSAVEGF 97

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 24  CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAVTCKADA 80
           C+ C    A +FCR D+A LCL CD  +H  N ++ KH R  +C+ C + P +V C  D 
Sbjct: 12  CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query: 81  AALCVTCDNDIHSANPLARRHERLPIEPF 109
             LC  CD D+H +   +  HER  +E F
Sbjct: 72  LVLCQECDWDVHGSCSSSATHERSAVEGF 100

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 24  CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADA 80
           CD C ++ A V+C+ DSA LCL CD ++H       KH R  +C+ C ++P+++ C+ + 
Sbjct: 13  CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETER 72

Query: 81  AALCVTCDNDIHSANPLARRHERLPIEPF 109
           + LC  CD   H+A+  +  H R P E F
Sbjct: 73  SVLCQNCDWQHHTAS--SSLHSRRPFEGF 99

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
255586039	388	zinc finger protein, putative [Ricinus c	0.957	0.927	0.659	1e-132
358248978	374	zinc finger protein CONSTANS-LIKE 5-like	0.936	0.941	0.646	1e-118
359806156	365	zinc finger protein CONSTANS-LIKE 5-like	0.909	0.936	0.627	1e-117
449520712	375	PREDICTED: zinc finger protein CONSTANS-	0.954	0.957	0.633	1e-115
357479803	375	CONSTANS-like zinc finger protein [Medic	0.941	0.944	0.592	1e-113
224142289	362	predicted protein [Populus trichocarpa]	0.890	0.925	0.610	1e-113
224117602	339	predicted protein [Populus trichocarpa]	0.843	0.935	0.611	1e-110
225446176	361	PREDICTED: zinc finger protein CONSTANS-	0.909	0.947	0.559	1e-103
9759262	351	CONSTANS-like B-box zinc finger protein-	0.901	0.965	0.551	1e-103
449457121	368	PREDICTED: zinc finger protein CONSTANS-	0.936	0.956	0.582	1e-102

>gi|255586039|ref|XP_002533687.1| zinc finger protein, putative [Ricinus communis] gi|223526413|gb|EEF28695.1| zinc finger protein, putative [Ricinus communis]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/402 (65%), Positives = 307/402 (76%), Gaps = 42/402 (10%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHA 59
           MGIE+ S+K ++GGW+VAA+ CD+CK AAAAVFCR DSAFLCLNCD +IH     +++H 
Sbjct: 1   MGIEMESLKSLTGGWTVAARRCDSCKTAAAAVFCRADSAFLCLNCDAKIHAANKLVSRHE 60

Query: 60  RVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKS 119
           RVWMCEVCEQAPAAVTCKADAAALCVTCD DIHSANPLARRHER+P+EPFFDSA SIVKS
Sbjct: 61  RVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSAGSIVKS 120

Query: 120 SAFNFLVPSDQNG-GSEFTGASEH--DGVDSASWLIPNSKP--------GIENAGEMK-- 166
           S FNFLVP+D NG GS      +H  D V+  SWL+PN           GIEN  EMK  
Sbjct: 121 SPFNFLVPTDHNGAGSAAFNHQQHEDDDVEGVSWLLPNPSSTMINSKLGGIEN-HEMKSG 179

Query: 167 ------SGDMFF--IDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPI 218
                 SGD+FF  +DPF+DL +F   N   NH SA  DSVVPVQ TKP      AA+ I
Sbjct: 180 HGGGGGSGDLFFTEMDPFLDL-EFHQNN---NHSSAANDSVVPVQITKP-----AAASSI 230

Query: 219 PLINNENCFDIDFCRSKLSSFNYQS----QSVSSSSLDVGVVPDGNSMSDISYTFGRNMS 274
           P++NN+ C+DIDFCR+KLSSFNY +    QSVSSSSLDVGVVPDG+S SDISY FGRNM+
Sbjct: 231 PVMNNDICYDIDFCRTKLSSFNYPTQSLSQSVSSSSLDVGVVPDGSSTSDISYPFGRNMN 290

Query: 275 TGSGADPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRP 334
           T +  DPS  +S    NQA+Q+CGI+REARVLRYREKRKNRKFEKTIRY SRKAYAETRP
Sbjct: 291 TCT--DPSGPISGNSTNQAAQMCGINREARVLRYREKRKNRKFEKTIRYASRKAYAETRP 348

Query: 335 RIKGRFAKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           RIKGRFAKR E D+++DRLY S +S   +YL D+QYGVVP+F
Sbjct: 349 RIKGRFAKRTEIDTDMDRLYNSPSSV--SYLGDAQYGVVPTF 388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248978|ref|NP_001239972.1| zinc finger protein CONSTANS-LIKE 5-like [Glycine max] gi|260513716|gb|ACX42570.1| CONSTANS-like zinc finger protein [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 256/396 (64%), Positives = 291/396 (73%), Gaps = 44/396 (11%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNK----H 58
           MGIE    K     WSV  KPCD+CK A+AA+FCR DSAFLC+ CD  IH C NK    H
Sbjct: 1   MGIERGGFKGFRSAWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSNIH-CSNKLASRH 59

Query: 59  ARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK 118
            RVWMCEVCEQAPAAVTCKADAAALCVTCD+DIHSANPLA+RHER+P+EPFFDSA+SIVK
Sbjct: 60  ERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVK 119

Query: 119 SSA---FNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPG--IENAGEMKSGDMFF- 172
           +SA   F F+VPSD  G S+   A   D  D+A+WLIPN   G  + +A E+KS ++FF 
Sbjct: 120 ASAAATFGFIVPSDDGGASD---AFAPDDSDAAAWLIPNPNFGSKLMDAPEIKSKEIFFS 176

Query: 173 -IDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINN------EN 225
            +DPF+   DFDY NSFQN++SAG DSVVPVQ  KP   P       PLINN      E 
Sbjct: 177 EMDPFL---DFDYSNSFQNNNSAGNDSVVPVQ--KPSLAP-------PLINNHHHHQSET 224

Query: 226 CFDIDFCRSKLSSFNY----QSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADP 281
           CFD+DFCRSKLSSFNY     SQSVSSSSLDVGVVPDGN++SD+SY+FGRN S  SG   
Sbjct: 225 CFDVDFCRSKLSSFNYPSNSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGI-- 282

Query: 282 SVTVSAPGANQ-ASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRF 340
            V VS     Q A+QLCG+DREARVLRYREKRKNRKFEKTIRY SRKAYAETRPRIKGRF
Sbjct: 283 -VVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRF 341

Query: 341 AKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           AKR E DS+V+RLY   +      + D+ YGVVPSF
Sbjct: 342 AKRTEIDSDVERLY---SPGPAVLMLDTPYGVVPSF 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806156|ref|NP_001240941.1| zinc finger protein CONSTANS-LIKE 5-like [Glycine max] gi|260513720|gb|ACX42572.1| CONSTANS-like zinc finger protein [Glycine max]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 249/397 (62%), Positives = 287/397 (72%), Gaps = 55/397 (13%)

Query: 3   MGIELHSVKVISGGWSVA-AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNK---- 57
           MGIE   +K    GWSV   KPCD+CK A+AA+FC +DSAFLC+ CD +IH C NK    
Sbjct: 1   MGIERGGLKGFRSGWSVPPKKPCDSCKLASAALFCHLDSAFLCIACDSKIH-CANKLASR 59

Query: 58  HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV 117
           H RVWMCEVCEQAPA+VTCKADAAALCVTCD+DIHSANPLA+RHER+P+EPFFDSA+SIV
Sbjct: 60  HERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIV 119

Query: 118 KSSA---FNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPG--IENAGEMKSGDMFF 172
           K+SA   F F+VPSD    S+       D  DSA+WLIPN   G  + +A E+KS ++FF
Sbjct: 120 KASATASFGFVVPSDDGAASDVFAP---DDSDSAAWLIPNPNFGSKLMDAPEIKSKEIFF 176

Query: 173 --IDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINN------- 223
             +DPF+   DFDY NSFQNH+SA  DSVVPVQ TKP   P       P INN       
Sbjct: 177 SEMDPFL---DFDYSNSFQNHNSAVNDSVVPVQ-TKPSLAP-------PPINNHQHHHQS 225

Query: 224 ENCFDIDFCRSKLSSFNY----QSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGA 279
           E CFDIDFCRSKLSSFNY     SQSVSSSSLDVGVVPDGN++SD+SY+ G  +S G G 
Sbjct: 226 ETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQG- 284

Query: 280 DPSVTVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGR 339
                        A+QLCG+DREARVLRYREKRKNRKFEKTIRY SRKAYAETRPRIKGR
Sbjct: 285 -------------ATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGR 331

Query: 340 FAKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           FAKR E DS+V+RLY   +  A A + D+ YGVVP+F
Sbjct: 332 FAKRTEIDSDVERLY---SPGAAALMLDTPYGVVPTF 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520712|ref|XP_004167377.1| PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis sativus]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/390 (63%), Positives = 287/390 (73%), Gaps = 31/390 (7%)

Query: 3   MGIELHSV-KVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNK---- 57
           MGI+  SV K   GGW V AKPCD+CK   AAV+CR DSAFLCL CD +IH C NK    
Sbjct: 1   MGIDGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLPCDAKIH-CANKLASR 59

Query: 58  HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV 117
           H RVWMCEVCEQAPA V CKADAAALCVTCD DIHSANPLARRHER+P+EPFFDS +S+V
Sbjct: 60  HERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSTESVV 119

Query: 118 KSSA-FNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNS--KPGIENAGEMK--SGDMFF 172
           KSS+ FNFLVP ++       GA  H+ V+ +SWL+ NS     + +  E+K  SGD  F
Sbjct: 120 KSSSVFNFLVP-NETTAPVCDGAHHHEEVEVSSWLLSNSFFNSKLVDGPEIKPPSGDHLF 178

Query: 173 IDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKP--EPIPAQAAAPIPLINNENCFDID 230
            +      DF+YPN   N+HSA  DSVVPVQ TKP   P+  Q  +P      ENC+DID
Sbjct: 179 FNEMDSFIDFEYPNPV-NNHSAINDSVVPVQ-TKPLLTPVINQTHSP------ENCYDID 230

Query: 231 FCRSKLSSFNYQSQ----SVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVS 286
           FCRSKL+SF YQ Q    SVSSSSL+VGVVP+GNS+SDISY  G+N+ST  GAD  + +S
Sbjct: 231 FCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSVSDISYPMGQNVST--GADSGLPLS 288

Query: 287 APGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
             G NQA+QLCG+DREARVLRYREKRKNRKFEKTIRY SRKAYAETRPRIKGRFAKR + 
Sbjct: 289 GSG-NQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDM 347

Query: 347 DSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
            SEVD +Y SAAS+   +L D+QYGVVP+F
Sbjct: 348 LSEVDEIYGSAASS--VFLTDAQYGVVPTF 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479803|ref|XP_003610187.1| CONSTANS-like zinc finger protein [Medicago truncatula] gi|355511242|gb|AES92384.1| CONSTANS-like zinc finger protein [Medicago truncatula]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/395 (59%), Positives = 276/395 (69%), Gaps = 41/395 (10%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHN---CMNKHA 59
           MGIE   +K + GGWSV  K CD+CK   AA+FCR DSAFLC+NCD  IH+     ++H 
Sbjct: 1   MGIERGGLKSLRGGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHE 60

Query: 60  RVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK- 118
           RVWMCEVCEQAPA+VTCKADAAALCVTCD+DIHSANPLARRHER+P+EPFFDSA+S+VK 
Sbjct: 61  RVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKS 120

Query: 119 -------SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPG--IENAGEMKSGD 169
                  +++FNF+VP+D   G         D  ++A+WLIPN   G  +    ++K+ +
Sbjct: 121 SSAAAAAAASFNFVVPTDDGYG--------QDDAEAAAWLIPNPNFGSKLNETQDIKTRE 172

Query: 170 MFF--IDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCF 227
           MFF  +DPF+D  D+       N  +A  DSVVPVQ TKP P      AP+   N+E CF
Sbjct: 173 MFFSDMDPFLDF-DYSNNFQNNNCSNAMNDSVVPVQ-TKPTP------APMMNHNSEGCF 224

Query: 228 DIDFCRSKLSSFNY----QSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSV 283
           DIDFCRSKLSSFNY     S SVSSSSLDVGVVPDGN++S+ISY FG       G    V
Sbjct: 225 DIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDGNTVSEISYNFGSESMVSGG----V 280

Query: 284 TVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
             S  G   A+QLCG+DREARV+RYREKRKNRKFEKTIRY SRKAYAETRPRIKGRFAKR
Sbjct: 281 NSSNQGVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 340

Query: 344 AEADSEVDRLYKSA--ASAAGAYLADSQYGVVPSF 376
            E DS+VDRLY  A   S   + L D  YGVVP+F
Sbjct: 341 TEIDSDVDRLYNPADPLSVPSSMLMDCPYGVVPTF 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142289|ref|XP_002324491.1| predicted protein [Populus trichocarpa] gi|222865925|gb|EEF03056.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/401 (61%), Positives = 288/401 (71%), Gaps = 66/401 (16%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHN------CMN 56
           MGIE+ S+K ++GGWSVAAK CD+CK AAAA FCR DSAFLCLNCD +IH+       M+
Sbjct: 1   MGIEVESLKNLTGGWSVAAKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSQVNSKIMS 60

Query: 57  KHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSI 116
           +H RVWMCEVCEQAPAAVTCKADAAALCVTCD DIHSANPLARRHER+PIEPF++SA+SI
Sbjct: 61  RHERVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSANPLARRHERVPIEPFYNSAESI 120

Query: 117 VK-SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIP--------NSKPGIENAGEMKS 167
           VK S+AFN L+P  +NG S   G  ++D V+  SWL+         NSK  IEN   +K+
Sbjct: 121 VKTSTAFNILIPG-ENGVS---GYDQNDDVEGVSWLLQSNHTTHDHNSKLQIENP-VVKT 175

Query: 168 GDMFF--IDPFIDLNDFDYPNSF-----QNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPL 220
           GDMFF  IDPF++L   +Y NS      + H  AG DSVVPVQ TKP        AP+P+
Sbjct: 176 GDMFFSEIDPFLEL---EYQNSIDASYEKIHGGAGADSVVPVQ-TKP--------APLPV 223

Query: 221 INNENCFDIDFCRSKLS----SFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTG 276
           IN+E+CFDIDFCRSKL+    S    S SVSSSSLDVGVVPDGNS+              
Sbjct: 224 INHESCFDIDFCRSKLTSFSYSSQSLSHSVSSSSLDVGVVPDGNSI-------------- 269

Query: 277 SGADPSVTVSAPGANQ-ASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPR 335
                 + +S   ANQ A+QL GIDREARVLRYRE+RKNRKFEKTIRY SRKAYAETRPR
Sbjct: 270 ------MPLSGWTANQAATQLAGIDREARVLRYRERRKNRKFEKTIRYASRKAYAETRPR 323

Query: 336 IKGRFAKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           IKGRFAKR E +S++D LY S +S    ++AD+QYGVVPSF
Sbjct: 324 IKGRFAKRTEMESDMDNLYNSPSSV--PFMADTQYGVVPSF 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117602|ref|XP_002331677.1| predicted protein [Populus trichocarpa] gi|222874096|gb|EEF11227.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/396 (61%), Positives = 279/396 (70%), Gaps = 79/396 (19%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHN------CMN 56
           MGIE+ S+K ++GGWSVAAK CD+CK AAAA FCR DSAFLCLNCD +IH+       M+
Sbjct: 1   MGIEVESLKNLTGGWSVAAKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSGVNSKIMS 60

Query: 57  KHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSI 116
           +H RVWMCEVCEQAPAAVTCKADAAALCVTCD DIHSANPLARRHER+P+EPF+DSA+SI
Sbjct: 61  RHERVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSANPLARRHERVPVEPFYDSAESI 120

Query: 117 VK-SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--I 173
           VK SSAFNFL                                         +GDMFF  +
Sbjct: 121 VKTSSAFNFL-----------------------------------------TGDMFFCEM 139

Query: 174 DPFIDLNDFDYPNSFQNHHS-------AGMDSVVPVQTTKPEPIPAQAAAPIPLINNENC 226
           DPF+D   F+Y NS    +        AG DSVVPVQ  KP        AP+P+I+++NC
Sbjct: 140 DPFLD---FEYQNSMDGRYKQSHGGGGAGADSVVPVQN-KP--------APLPVIDHKNC 187

Query: 227 FDIDFCRSKLSSFN-----YQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADP 281
           FDIDFCRSKL+SF+       S SVSSSSLDVGVVPDGNSMSDISY FGR+M+T +  DP
Sbjct: 188 FDIDFCRSKLTSFSSYPSQSLSHSVSSSSLDVGVVPDGNSMSDISYPFGRSMNTYT--DP 245

Query: 282 SVTVSAPGANQAS-QLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRF 340
           S+ +S    NQA+ QL GIDREARVLRYREKRKNRKFEKTIRY SRKAYAETRPRIKGRF
Sbjct: 246 SMPISGSTTNQAAAQLAGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRF 305

Query: 341 AKRAEADSEVDRLYKSAASAAGAYLADSQYGVVPSF 376
           AKR E +S++D LY S +S    +LAD+ YGVVPSF
Sbjct: 306 AKRTEMESDMDTLYNSPSSV--PFLADTHYGVVPSF 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446176|ref|XP_002277953.1| PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Vitis vinifera]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/393 (55%), Positives = 273/393 (69%), Gaps = 51/393 (12%)

Query: 3   MGI-ELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKH 58
           MG  EL+     +  W++AAKPCD+CK+AAA +FCR DSAFLC+ CD +IH      ++H
Sbjct: 1   MGFQELNGKTFSAATWALAAKPCDSCKSAAALLFCRADSAFLCVGCDSKIHGANKLASRH 60

Query: 59  ARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK 118
            RVWMCEVCEQAPA+VTCKADAAALCVTCD DIHSANPLARRH+R+P+ PF+DSA+S+VK
Sbjct: 61  ERVWMCEVCEQAPASVTCKADAAALCVTCDRDIHSANPLARRHDRVPVVPFYDSAESLVK 120

Query: 119 SS--AFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--ID 174
           S+  A  FLVP          GA + +  ++ASWL+PN  P +    E+KSG++FF  ID
Sbjct: 121 STAAAVGFLVPG---------GAGDEEDSEAASWLLPN--PKLPEGPEVKSGEVFFSDID 169

Query: 175 PFIDLNDFDYPNS----FQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINN--ENCFD 228
           PF+   DFDYP++      +HH  G D VVPVQ   P P         P+ N+  +NCF+
Sbjct: 170 PFL---DFDYPDAKFPHHHHHHCGGNDGVVPVQAKDPSP---------PVTNHPADNCFE 217

Query: 229 IDFCRSKLSSFNYQS--QSVSSSSLDVGVVPDG--NSMSDISYTFGRNMSTGSGADPSVT 284
           +DF RSKLS++NY +   S S SS DVGVVPDG  NSMSD SY   + +S          
Sbjct: 218 LDFSRSKLSAYNYTAQSLSQSISSSDVGVVPDGNCNSMSDTSYPSMKQVSG-------GG 270

Query: 285 VSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRA 344
                 +QA+QL G+DREARVLRYREKRKNRKFEKTIRY SRKAYAETRPRIKGRFAKR 
Sbjct: 271 GGGSTGSQATQLSGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 330

Query: 345 EADSE-VDRLYKSAASAAGAYLADSQYGVVPSF 376
           E +SE VD +Y SA++A  A++ D+ YGVVPS+
Sbjct: 331 EMESEMVDHIYNSASAA--AFMVDAGYGVVPSY 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759262|dbj|BAB09583.1| CONSTANS-like B-box zinc finger protein-like [Arabidopsis thaliana]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/386 (55%), Positives = 260/386 (67%), Gaps = 47/386 (12%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVW 62
           MG  L S+K ISGGW  AA+ CD CK+  AAVFCRVDSAFLC+ CD RIH+   +H RVW
Sbjct: 1   MGFGLESIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS-FTRHERVW 59

Query: 63  MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADS----IVK 118
           +CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++    I  
Sbjct: 60  VCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISA 119

Query: 119 SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNS-------KPGIENAGEMKSGDMF 171
           SS F  L  S     +     ++  G+    WL+PN        + G EN   MK    F
Sbjct: 120 SSTFGILGSSTTVDLTAVPVMADDLGL--CPWLLPNDFNEPAKIEIGTEN---MKGSSDF 174

Query: 172 FIDPFIDLNDFDYPNSFQNHH-SAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDID 230
               F  L DF++PNSF +H  +AG DS+VPVQ TK E        P+PL NN++CFDID
Sbjct: 175 MFSDFDRLIDFEFPNSFNHHQNNAGGDSLVPVQ-TKTE--------PLPLTNNDHCFDID 225

Query: 231 FCRSKLSSFNYQSQSVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGA 290
           FCRSKLS+F Y SQSVS+SS++ GVVPDGN+ + ++ +   + +TG            G 
Sbjct: 226 FCRSKLSAFTYPSQSVSTSSIEYGVVPDGNTNNSVNRSTITSSTTG------------GD 273

Query: 291 NQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEV 350
           +QAS +   DREARVLRYREKRKNRKFEKTIRY SRKAYAE+RPRIKGRFAKR E  +E 
Sbjct: 274 HQASSM---DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE--TEN 328

Query: 351 DRLYKSAASAAGAYLADSQYGVVPSF 376
           D ++ S   A+ A+   +QYGVVP+F
Sbjct: 329 DDIFLSHVYASAAH---AQYGVVPTF 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457121|ref|XP_004146297.1| PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis sativus] gi|449520710|ref|XP_004167376.1| PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis sativus]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/388 (58%), Positives = 267/388 (68%), Gaps = 36/388 (9%)

Query: 3   MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNK----H 58
           MGI+     V++G      +PC  CKA  AAV+CR DSAFLCL+CD +IH C NK    H
Sbjct: 1   MGID--GATVVNG---FRGRPCGFCKADPAAVYCRPDSAFLCLSCDAKIH-CANKLASRH 54

Query: 59  ARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK 118
            RVWMCEVCEQAPA VTCKADAAALCVTCD DIHSANPLA RHER+P+EPFFD+A+S+VK
Sbjct: 55  DRVWMCEVCEQAPAVVTCKADAAALCVTCDADIHSANPLASRHERVPVEPFFDTAESVVK 114

Query: 119 SSA-FNFLVPSDQNGGSEFTGASEHDGVDSASWLI--PNSKPGIENAGEMKS---GDMFF 172
           SS+  NFLVP + N      G   H+ V+ ASWL+  P+    + +  E+K+   GD  F
Sbjct: 115 SSSVLNFLVPDETNVCD---GVHHHEEVEVASWLLSNPSFNSKLVHGPEIKTQLGGDHLF 171

Query: 173 IDPFIDLNDFDYPNSFQNHHSAGMDSVVPVQTTKPEPIPAQAAAPIPLINNENCFDIDFC 232
                   DF+YPNS  + H+   DS+VPVQ TKP+P P       P    ENC+DI+FC
Sbjct: 172 FTEMDSFIDFEYPNSVNDDHNDIKDSIVPVQ-TKPDPTPVINHTHSP----ENCYDIEFC 226

Query: 233 RSKLSSFNYQSQ----SVSSSSLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAP 288
           RSKL+SF YQ Q    SVSSSSLDVGVVP   SMS+ SY  G     G   D  + +S  
Sbjct: 227 RSKLNSFGYQPQSLSHSVSSSSLDVGVVPQAISMSETSYPMG-----GQTGDSGLPLSGS 281

Query: 289 GANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADS 348
           G NQA+QLCG+DREARVLRYREKRKNRKFEKT+RY SRKAYAETRPRIKGRFAKR +  S
Sbjct: 282 G-NQATQLCGMDREARVLRYREKRKNRKFEKTVRYASRKAYAETRPRIKGRFAKRTDMLS 340

Query: 349 EVDRLYKSAASAAGAYLADSQYGVVPSF 376
           EVD +Y SAAS     L D+QYG+VP+F
Sbjct: 341 EVDEMYGSAASH--VLLTDAQYGLVPTF 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2172545	355	COL5 "CONSTANS-like 5" [Arabid	0.843	0.892	0.534	6.2e-85
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.614	0.665	0.358	3.8e-58
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.332	0.425	0.544	4.2e-57
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.904	0.957	0.396	4.6e-57
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.452	0.417	0.375	5.4e-53
TAIR|locus:2143206	373	CO "CONSTANS" [Arabidopsis tha	0.893	0.900	0.371	1.9e-51
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.436	0.415	0.359	4.2e-49
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.428	0.470	0.412	5.4e-31
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.452	0.656	0.375	7.1e-29
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.231	0.200	0.4	1e-23

TAIR|locus:2172545 COL5 "CONSTANS-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 194/363 (53%), Positives = 230/363 (63%)

Query:     3 MGIELHSVKVISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVW 62
             MG  L S+K ISGGW  AA+ CD CK+  AAVFCRVDSAFLC+ CD RIH+   +H RVW
Sbjct:     1 MGFGLESIKSISGGWGAAARSCDACKSVTAAVFCRVDSAFLCIACDTRIHS-FTRHERVW 59

Query:    63 MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK---- 118
             +CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++ V     
Sbjct:    60 VCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISA 119

Query:   119 SSAFNFLVPSDQNGGSEFTGASEH-DGVDSASWLIPN--SKPG-IENAGE-MKSGDMFFI 173
             SS F  L  S      + T      D +    WL+PN  ++P  IE   E MK    F  
Sbjct:   120 SSTFGILGSSTT---VDLTAVPVMADDLGLCPWLLPNDFNEPAKIEIGTENMKGSSDFMF 176

Query:   174 DPFIDLNDFDYPNSFQNHH--SAGMDSVVPVQT-TKPEXXXXXXXXXXXLINNENCFDID 230
               F  L DF++PNSF NHH  +AG DS+VPVQT T+P            L NN++CFDID
Sbjct:   177 SDFDRLIDFEFPNSF-NHHQNNAGGDSLVPVQTKTEP----------LPLTNNDHCFDID 225

Query:   231 FCRSKLXXXX----XXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVS 286
             FCRSKL                  ++ GVVPDGN+ + +      N ST       +T S
Sbjct:   226 FCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSV------NRST-------ITSS 272

Query:   287 APGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEA 346
               G +   Q   +DREARVLRYREKRKNRKFEKTIRY SRKAYAE+RPRIKGRFAKR E 
Sbjct:   273 TTGGDH--QASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTET 330

Query:   347 DSE 349
             +++
Sbjct:   331 END 333

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
 Identities = 94/262 (35%), Positives = 134/262 (51%)

Query:    14 SGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQA 70
             SG W   A+ CDTC++AA  V+C  DSA+LC  CD R+H      ++H RV +C+ CE A
Sbjct:     9 SGTW---ARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESA 65

Query:    71 PAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQ 130
             PAA  CKADAA+LC  CD +IHSANPLARRH+R+PI P   SA+S   SS    + PS+ 
Sbjct:    66 PAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPL--SANSC--SS----MAPSET 117

Query:   131 NGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLN---DFDYPNS 187
             +  ++       D  + ASWL+PN    I N        + ++D  +D +   D  + ++
Sbjct:   118 DADND------EDDREVASWLLPNPGKNIGNQNNGFLFGVEYLD-LVDYSSSMDNQFEDN 170

Query:   188 FQNHH--SAGMDSVVPVQTTKPEXXXXXXXXXXXL-INNENCFDIDFCRSKLXXXXXXXX 244
                H+  S G D VVP+Q  +             L IN        +  + L        
Sbjct:   171 QYTHYQRSFGGDGVVPLQVEESTSHLQQSQQNFQLGINYGFSSGAHYNNNSLKDLNHSAS 230

Query:   245 XXXXXXLDVGVVPDGNSMSDIS 266
                   +D+ VVP+  + SDI+
Sbjct:   231 VSS---MDISVVPESTA-SDIT 248

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 79/145 (54%), Positives = 102/145 (70%)

Query:    20 AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTC 76
             +++ CD+CK+ AA +FCR D+AFLC +CD +IH      ++H RVW+CEVCEQAPA VTC
Sbjct:     4 SSRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTC 63

Query:    77 KADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK-SSAFNFLVPSDQNGGSE 135
             KADAAALCVTCD DIHSANPL+RRHER+PI PF+D+       SS+ NF+   D++GG  
Sbjct:    64 KADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---DEDGGDV 120

Query:   136 FTGASEHDGVDSASWLIPNSKPGIE 160
                        +ASWL+  +K GIE
Sbjct:   121 -----------TASWLL--AKEGIE 132

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 149/376 (39%), Positives = 195/376 (51%)

Query:    13 ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCM-NKHARVWMCEVCEQ 69
             +   W   A+ CDTC++AA  V+CR DSA+LC +CD ++H  N + ++H RV +C+ CE+
Sbjct:     4 VESNW---AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCER 60

Query:    70 APAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPS 128
             APAA  CKADAA+LC TCD++IHSANPLARRH+R+PI P  + S  S   + +    V  
Sbjct:    61 APAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTD 120

Query:   129 DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDF-DYP 185
              +N         + D  ++ASWL+PNS     N      GD F   +D       F D  
Sbjct:   121 PENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQFTDQS 180

Query:   186 NSFQ---N--HHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKLXXXX 240
             N +Q   N    S G D VVP+Q    +            IN   C      RS      
Sbjct:   181 NQYQLDCNVPQRSYGEDGVVPLQIEVSKGMYQEQQNFQLSIN---CGSWGALRSS---NG 234

Query:   241 XXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSVTVSAPGANQASQLCGID 300
                       +D+GVVP+  + SD + +  R+        P      P    A  L   D
Sbjct:   235 SLSHMVNVSSMDLGVVPESTT-SDATVSNPRS--------PKAVTDQPPYPPAQMLSPRD 285

Query:   301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAEADSEVDRLYKXXXXX 360
             REARVLRYREK+K RKFEKTIRY SRKAYAE RPRIKGRFAK+ + D E ++ +      
Sbjct:   286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMITF 345

Query:   361 XXXXXXXXQYGVVPSF 376
                      YG+VPSF
Sbjct:   346 DTG------YGIVPSF 355

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 321 (118.1 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
 Identities = 69/184 (37%), Positives = 106/184 (57%)

Query:    21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
             A+PCD C+AA + V+CR D+A+LC +CD R+H      ++H RV +CE CE+APAA+ C+
Sbjct:    32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91

Query:    78 ADAAALCVTCDNDIHSANPLARRHERLPIEPF---FDSADSIVKSSAF---NFLVPSDQN 131
             ADAAALCV CD  ++SANPLARRH+R+P+ P       A S++  +       L   D+ 
Sbjct:    92 ADAAALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEE 151

Query:   132 GGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNS 187
               S    + + D  ++ +    N      N+    +G M+F  +D + DL  ++  Y N 
Sbjct:   152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNR 210

Query:   188 FQNH 191
              +N+
Sbjct:   211 IENN 214

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2143206 CO "CONSTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 146/393 (37%), Positives = 198/393 (50%)

Query:    13 ISGGWSVAAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQ 69
             I  G +  A+PCDTC++ A  V+C  DSA+LC++CD ++H+     ++H RV +CE CE+
Sbjct:     9 IGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCER 68

Query:    70 APAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF----FDSADSIVKSSAFNFL 125
             APAA  C+AD A+LC  CD+++HSANPLARRH+R+PI P     F S  +    S     
Sbjct:    69 APAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMT 128

Query:   126 VPS-----DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLN 180
              P      DQ  G E     + D  + ASWL PNS    +N     +G + F D +++L 
Sbjct:   129 DPEKRLVVDQEEGEE----GDKDAKEVASWLFPNSD---KNNNNQNNG-LLFSDEYLNLV 180

Query:   181 DF----DYP--NSFQNHH--------SAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENC 226
             D+    DY     +  H         S G D VVP++  +               N +N 
Sbjct:   181 DYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLEESRGHQCH--------NQQNF 232

Query:   227 -FDIDFCRS--KLXXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTFGRNMSTGSGADPSV 283
              F+I +  S                  ++ GVVP+    S    T   +  T  G     
Sbjct:   233 QFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPE----STACVTTASHPRTPKGTVEQQ 288

Query:   284 TVSAPGANQASQLCGIDREARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKR 343
                A      +QL  +DREARVLRYREKRK RKFEKTIRY SRKAYAE RPR+ GRFAKR
Sbjct:   289 PDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348

Query:   344 AEADSEVDRLYKXXXXXXXXXXXXXQYGVVPSF 376
              E ++E ++ +               YG+VPSF
Sbjct:   349 -EIEAE-EQGFNTMLMYNTG------YGIVPSF 373

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IGI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 284 (105.0 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 64/178 (35%), Positives = 100/178 (56%)

Query:    21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
             A+PCD C+AA + V+CR D+A+LC +CD R+H      ++H RV +CE CE+APAA+ C+
Sbjct:    32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91

Query:    78 ADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFT 137
             ADAAALCV CD  +HSANPL      +P       A+++V ++    L   D+   S   
Sbjct:    92 ADAAALCVACDVQVHSANPLPAI--TIPATSVL--AEAVVATATV--LGDKDEEVDSWLL 145

Query:   138 GASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNSFQNH 191
              + + D  ++ +    N      N+    +G M+F  +D + DL  ++  Y N  +N+
Sbjct:   146 LSKDSDNNNNNNNNNDNDNNDNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNRIENN 202

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 75/182 (41%), Positives = 109/182 (59%)

Query:    21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
             A+PCD C+AA + V+CR D+A+LC +CD R+H      ++H RV +CE CEQAPAA+ C+
Sbjct:    32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALACR 91

Query:    78 ADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFT 137
             ADAAALCV CD  +HSANPLARRH+R+P+ P    A +I  +S     V +     +   
Sbjct:    92 ADAAALCVACDVQVHSANPLARRHQRVPVAPL--PAITIPATSVLAEAVVAT----ATVL 145

Query:   138 GASEHDGVDSASWLI----PNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNSFQ 189
             G  + + VDS  W+I     N+     N+    +G M+F  +D + DL  ++  Y N  +
Sbjct:   146 GGKDEE-VDS--WIILSKDSNNNNNNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNRIE 201

Query:   190 NH 191
             N+
Sbjct:   202 NN 203

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 69/184 (37%), Positives = 106/184 (57%)

Query:    21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCK 77
             A+PCD C+AA + V+CR D+A+LC +CD R+H      ++H RV +CE CE+APAA+ C+
Sbjct:    32 ARPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACR 91

Query:    78 ADAAALCVTCDNDIHSANPLARRHERLPIEPF---FDSADSIVKSSAF---NFLVPSDQN 131
             ADAAALCV CD  ++SANPLARRH+R+P+ P       A S++  +       L   D+ 
Sbjct:    92 ADAAALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEE 151

Query:   132 GGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFF--IDPFIDLNDFD--YPNS 187
               S    + + D  ++ +    N      N+    +G M+F  +D + DL  ++  Y N 
Sbjct:   152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNG-MYFGEVDEYFDLVGYNSYYDNR 210

Query:   188 FQNH 191
              +N+
Sbjct:   211 IENN 214

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 36/90 (40%), Positives = 50/90 (55%)

Query:    23 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMN-KHARVWMCEVCEQAPAAVTCKAD 79
             PCD C    A +FCR D+A LCL CD ++H  N ++ KH R  +C+ C   P +V C  D
Sbjct:     8 PCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTD 67

Query:    80 AAALCVTCDNDIHSANPLARRHERLPIEPF 109
                LC  CD D+H +  ++  H R  +E F
Sbjct:    68 NLILCQECDWDVHGSCSVSDAHVRSAVEGF 97

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FHH8	COL5_ARATH	No assigned EC number	0.5435	0.9015	0.9549	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
pfam06203	45	pfam06203, CCT, CCT motif	4e-25
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-09
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	1e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-07
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	1e-06
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	5e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 95.8 bits (239), Expect = 4e-25
 Identities = 32/45 (71%), Positives = 39/45 (86%)

Query: 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
           REA +LRY+EKRK RKF+K IRY SRKA AE+RPR+KGRF K++E
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 59  ARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI 106
            R   C+     PA   C+   A LC TCD   H      R H  + +
Sbjct: 1   QRAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 62  WMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI 106
            +C+   + P ++ C+ D A LCV CD  +H        H R+P+
Sbjct: 1   RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 23 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWM 63
           CD       ++FC  D A LC++CDL +H   + H RV +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH---SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 20 AAKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWM 63
           A  CD+     A  FC    A LC  CD   H     H  V +
Sbjct: 2  RAPKCDSHGDEPAEFFCEECGALLCRTCDEAEH---RGHTVVLL 42

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 60  RVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI 106
           +  +C   E+ P  + C+     LC  C    H      + H  +P+
Sbjct: 2   KERLCPEHEEKPLELYCEDCQQLLCEECALSGH------KGHTVVPL 42

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.79
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.49
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.15
smart00336	42	BBOX B-Box-type zinc finger.	97.07
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.88
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.55
smart00336	42	BBOX B-Box-type zinc finger.	95.85
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.51
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	95.36
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.13

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.79  E-value=2.7e-20  Score=134.75  Aligned_cols=45  Identities=67%  Similarity=1.100  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhcccCCCcccccchhhhhhhCCCCCceeecCCC
Q 017166          301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE  345 (376)
Q Consensus       301 R~~~v~ry~eKr~~R~f~k~irY~~Rk~~A~~RpRvkGrF~k~~~  345 (376)
                      |+++|+||+|||++|+|+|+|+|++||++|+.|||||||||+.++
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            789999999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.49  E-value=6.5e-05  Score=51.41  Aligned_cols=38  Identities=39%  Similarity=0.934  Sum_probs=33.7

Q ss_pred             eeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeec
Q 017166           63 MCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI  106 (376)
Q Consensus        63 LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv  106 (376)
                      +|+.|+.+++.+||..|...+|..|+...|.      .|+++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6889988899999999999999999988864      7988886

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.15  E-value=0.00035  Score=47.75  Aligned_cols=38  Identities=39%  Similarity=0.885  Sum_probs=33.5

Q ss_pred             CCCccCCCceeEEeecCCcccccccchhhhccccCCceeee
Q 017166           23 PCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWM   63 (376)
Q Consensus        23 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~L   63 (376)
                      .|+.+..+++.+||..|.+.+|..|+...|.   .|.+++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~---~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS---GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC---CCCEeeC
Confidence            5999998899999999999999999988776   5888764

>smart00336 BBOX B-Box-type zinc finger

Probab=97.07  E-value=0.00041  Score=48.05  Aligned_cols=41  Identities=34%  Similarity=0.599  Sum_probs=35.2

Q ss_pred             eeeeeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeec
Q 017166           60 RVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI  106 (376)
Q Consensus        60 Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv  106 (376)
                      |..+|+.|+..++.+||..|...+|..|....|      +.|.++||
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999889999999999999999998765      56877765

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.88  E-value=0.0004  Score=48.70  Aligned_cols=40  Identities=25%  Similarity=0.513  Sum_probs=34.2

Q ss_pred             eeeeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeec
Q 017166           61 VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPI  106 (376)
Q Consensus        61 v~LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv  106 (376)
                      .++|..|+..++.+||..|...||..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4579999988899999999999999999999754      888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.55  E-value=0.00083  Score=61.64  Aligned_cols=91  Identities=21%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             CCCCCccCCCceeEEeecCCcccccccchhhhcc---ccCCceeeeeccccCcCce--EEecCCcccc----ccccCcCc
Q 017166           21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAA--VTCKADAAAL----CVTCDNDI   91 (376)
Q Consensus        21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~a---asRH~Rv~LCd~C~~apA~--v~C~~D~a~L----C~~CD~~i   91 (376)
                      ...|+.|....... |..|...+|..|+.++|..   ...|.++.+|..+....+.  +.|..+...+    +..++...
T Consensus         5 ~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (340)
T KOG1601|consen    5 AEDLDSCRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFV   83 (340)
T ss_pred             cccccccCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            44567776655555 9999999999999999987   2478888898888733333  4555555555    56688888


Q ss_pred             cCCCCCCCCcceeeccCCCCC
Q 017166           92 HSANPLARRHERLPIEPFFDS  112 (376)
Q Consensus        92 H~aN~la~rH~Rvpv~~~~~~  112 (376)
                      |..++...+|..+++.+....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~  104 (340)
T KOG1601|consen   84 SENNPNSLRHPPVPSMPSSNS  104 (340)
T ss_pred             ccccCCCCCCCCccccccccc
Confidence            888888888887777665543

>smart00336 BBOX B-Box-type zinc finger

Probab=95.85  E-value=0.0081  Score=41.48  Aligned_cols=40  Identities=33%  Similarity=0.623  Sum_probs=33.4

Q ss_pred             CCCCCccCCCceeEEeecCCcccccccchhhhccccCCceeee
Q 017166           21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWM   63 (376)
Q Consensus        21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~L   63 (376)
                      .+.|..+...++.+||..|.+.+|..|....|.   .|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H~---~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEHR---GHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhcC---CCceecC
Confidence            456999998899999999999999999987664   5766553

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.51  E-value=0.01  Score=41.50  Aligned_cols=40  Identities=23%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             CCCCCccCCCceeEEeecCCcccccccchhhhccccCCceeee
Q 017166           21 AKPCDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMNKHARVWM   63 (376)
Q Consensus        21 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aasRH~Rv~L   63 (376)
                      ...|+.|....+.+||..+...||..|....|..   |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~---H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG---HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT---SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC---CEEeEC
Confidence            4579999998899999999999999999988874   777654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=95.36  E-value=0.0096  Score=39.16  Aligned_cols=25  Identities=40%  Similarity=0.577  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhhcccCCCccccc
Q 017166          299 IDREARVLRYREKRKNRKFEKTIRYH  324 (376)
Q Consensus       299 ~~R~~~v~ry~eKr~~R~f~k~irY~  324 (376)
                      ..|.+.|+||.||||.|... +..|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            57999999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.13  E-value=0.0044  Score=64.24  Aligned_cols=75  Identities=28%  Similarity=0.524  Sum_probs=63.2

Q ss_pred             CCCCCccCCCc--eeEEeecCCcccccccchhhhcc---ccCCceee----------------eeccccCcCceEEecCC
Q 017166           21 AKPCDTCKAAA--AAVFCRVDSAFLCLNCDLRIHNC---MNKHARVW----------------MCEVCEQAPAAVTCKAD   79 (376)
Q Consensus        21 ~~~Cd~C~~~~--A~vyC~aD~A~LC~~CD~~vH~a---asRH~Rv~----------------LCd~C~~apA~v~C~~D   79 (376)
                      .-.|..|++++  |+|+|.....|.|.-|-.+.|-+   .++|.-++                -|.-++...-.+||.+|
T Consensus       162 a~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~c  241 (699)
T KOG4367|consen  162 ALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQC  241 (699)
T ss_pred             hhhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEec
Confidence            45699998764  89999999999999999999977   56665443                28888887889999999


Q ss_pred             ccccccccCcCccCCC
Q 017166           80 AAALCVTCDNDIHSAN   95 (376)
Q Consensus        80 ~a~LC~~CD~~iH~aN   95 (376)
                      .+++|..|-.+..++|
T Consensus       242 k~pvc~~clee~khs~  257 (699)
T KOG4367|consen  242 KMPVCYQCLEEGKHSS  257 (699)
T ss_pred             CChHHHHHHHhhcccc
Confidence            9999999999887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	9e-04

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 20/98 (20%), Positives = 24/98 (24%), Gaps = 20/98 (20%)

Query: 24  CDTCKAAAAAVFCRVDSAFLCLNCDLRIHNCMN-------------KHARVWMCEVCEQA 70
           CD   A  A   C       C  C    H                  H R  MC   E  
Sbjct: 9   CDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDE 68

Query: 71  PAAVTCKADAAALCVTC-DNDIHSANPLARRHERLPIE 107
              + C  D   +C  C     H      R H+   + 
Sbjct: 69  KVNMYCVTDDQLICALCKLVGRH------RDHQVAALS 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	97.99
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.82
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	94.5
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	93.13
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	92.07
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	91.94
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	90.88
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	89.61
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	88.59
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	86.7
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	85.89
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	85.45

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=97.99  E-value=3.2e-06  Score=68.23  Aligned_cols=80  Identities=21%  Similarity=0.427  Sum_probs=65.2

Q ss_pred             CCCCccCC---CceeEEeecCCcccccccchhhhcc---ccCCcee----------eeeccccCcCceEEecCCcccccc
Q 017166           22 KPCDTCKA---AAAAVFCRVDSAFLCLNCDLRIHNC---MNKHARV----------WMCEVCEQAPAAVTCKADAAALCV   85 (376)
Q Consensus        22 ~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~a---asRH~Rv----------~LCd~C~~apA~v~C~~D~a~LC~   85 (376)
                      ..|+.|..   .+|+.+|-.+.+.||..|...+|..   ..+|..+          .+|+.++..+..+||..|...+|.
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~   83 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA   83 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence            46999984   6899999999999999999998974   4577654          358888777899999999999999


Q ss_pred             ccCc-CccCCCCCCCCcceeecc
Q 017166           86 TCDN-DIHSANPLARRHERLPIE  107 (376)
Q Consensus        86 ~CD~-~iH~aN~la~rH~Rvpv~  107 (376)
                      .|.. ..|.      .|..+||.
T Consensus        84 ~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           84 LCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHTTTS------SSCBCCCC
T ss_pred             hcCCCCCcC------CCCeecCC
Confidence            9986 5664      36666654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.82  E-value=0.008  Score=48.08  Aligned_cols=43  Identities=23%  Similarity=0.502  Sum_probs=37.8

Q ss_pred             eeeccccC---cCceEEecCCccccccccCcCccCCCCCCCCccee
Q 017166           62 WMCEVCEQ---APAAVTCKADAAALCVTCDNDIHSANPLARRHERL  104 (376)
Q Consensus        62 ~LCd~C~~---apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rv  104 (376)
                      ..|++|..   .+|..+|..|...||..|...+|..++.+.+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            46999984   57999999999999999999989888777889876

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=93.13  E-value=0.046  Score=40.23  Aligned_cols=50  Identities=22%  Similarity=0.406  Sum_probs=39.6

Q ss_pred             cCCceeeeeccccCcCceEEecCCccccccccCcC-ccCCCCCCCCcceeeccCCCC
Q 017166           56 NKHARVWMCEVCEQAPAAVTCKADAAALCVTCDND-IHSANPLARRHERLPIEPFFD  111 (376)
Q Consensus        56 sRH~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~-iH~aN~la~rH~Rvpv~~~~~  111 (376)
                      .+..+..+|..+...+-.+||..|...+|..|... -|.      .|..+||...+.
T Consensus         3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~   53 (64)
T 2d8u_A            3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ   53 (64)
T ss_dssp             CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred             CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence            35566678999977889999999999999999764 553      588888876654

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=92.07  E-value=0.045  Score=33.53  Aligned_cols=19  Identities=47%  Similarity=0.630  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHhhcccCCC
Q 017166          301 REARVLRYREKRKNRKFEK  319 (376)
Q Consensus       301 R~~~v~ry~eKr~~R~f~k  319 (376)
                      |.+.|+||.||||.|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5678999999999987654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=91.94  E-value=0.061  Score=37.82  Aligned_cols=46  Identities=22%  Similarity=0.450  Sum_probs=36.8

Q ss_pred             CceeeeeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeeccCC
Q 017166           58 HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF  109 (376)
Q Consensus        58 H~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv~~~  109 (376)
                      ..|..+|..+...+-.+||..|...+|..|...-|.      .|..+||...
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea   48 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDA   48 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC-
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHH
Confidence            356678999977789999999999999999876553      5888888754

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=90.88  E-value=0.15  Score=36.30  Aligned_cols=43  Identities=23%  Similarity=0.491  Sum_probs=34.7

Q ss_pred             eeeeccccCcCceEEecCCccccccccCc-CccCCCCCCCCcceeeccCCC
Q 017166           61 VWMCEVCEQAPAAVTCKADAAALCVTCDN-DIHSANPLARRHERLPIEPFF  110 (376)
Q Consensus        61 v~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH~aN~la~rH~Rvpv~~~~  110 (376)
                      ..+|..+. .+-.+||..|...+|..|.. .-|      +.|..+||...+
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~   51 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGPS   51 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCTT
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHHh
Confidence            45798887 77899999999999999987 445      358888887654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=89.61  E-value=0.09  Score=40.96  Aligned_cols=43  Identities=23%  Similarity=0.502  Sum_probs=35.9

Q ss_pred             eeeccccC---cCceEEecCCccccccccCcCccCCCCCCCCccee
Q 017166           62 WMCEVCEQ---APAAVTCKADAAALCVTCDNDIHSANPLARRHERL  104 (376)
Q Consensus        62 ~LCd~C~~---apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rv  104 (376)
                      .+|+.|..   .+|...|..|.+.+|..|-...|...+...+|+.+
T Consensus        31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             ccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            56999975   56899999999999999988778777777888654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=88.59  E-value=0.16  Score=35.46  Aligned_cols=41  Identities=24%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             eeeeccccCcCceEEecCCccccccccC-cCccCCCCCCCCcceeecc
Q 017166           61 VWMCEVCEQAPAAVTCKADAAALCVTCD-NDIHSANPLARRHERLPIE  107 (376)
Q Consensus        61 v~LCd~C~~apA~v~C~~D~a~LC~~CD-~~iH~aN~la~rH~Rvpv~  107 (376)
                      ..+|..+...+..+||..|...+|..|. ..-|.      .|..+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            3568888767789999999999999997 44564      47667764

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=86.70  E-value=0.3  Score=37.73  Aligned_cols=48  Identities=25%  Similarity=0.487  Sum_probs=37.3

Q ss_pred             CceeeeeccccCcCceEEecCCccccccccCc-CccCCCCCCCCcceeeccCCCC
Q 017166           58 HARVWMCEVCEQAPAAVTCKADAAALCVTCDN-DIHSANPLARRHERLPIEPFFD  111 (376)
Q Consensus        58 H~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH~aN~la~rH~Rvpv~~~~~  111 (376)
                      ..+..+|+.++..+-.+||..|...+|..|.. .-|      ..|.-+||.....
T Consensus        15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~   63 (84)
T 2dja_A           15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFE   63 (84)
T ss_dssp             CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCC
T ss_pred             CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHH
Confidence            34455788887778999999999999999987 445      3577777776654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=85.89  E-value=0.42  Score=32.19  Aligned_cols=29  Identities=28%  Similarity=0.595  Sum_probs=24.5

Q ss_pred             eeccccCcCceEEecCCccccccccCc-Ccc
Q 017166           63 MCEVCEQAPAAVTCKADAAALCVTCDN-DIH   92 (376)
Q Consensus        63 LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH   92 (376)
                      +|..++ .+-.+||..|...+|..|.. .-|
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H   34 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH   34 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence            688886 67899999999999999987 445

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.45  E-value=0.42  Score=34.96  Aligned_cols=44  Identities=23%  Similarity=0.467  Sum_probs=34.2

Q ss_pred             eeeeeccccCcCceEEecCCccccccccCc-CccCCCCCCCCcceeeccCCC
Q 017166           60 RVWMCEVCEQAPAAVTCKADAAALCVTCDN-DIHSANPLARRHERLPIEPFF  110 (376)
Q Consensus        60 Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~-~iH~aN~la~rH~Rvpv~~~~  110 (376)
                      +..+|..+. .+-.+||..|...+|..|.. .-|      +.|..+||....
T Consensus        13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea~   57 (59)
T 2yrg_A           13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGPS   57 (59)
T ss_dssp             CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSSC
T ss_pred             cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHHh
Confidence            345788887 57899999999999999987 444      358888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	93.65
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	92.77
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	92.29
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	88.57
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	86.57

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.013  Score=42.73  Aligned_cols=50  Identities=22%  Similarity=0.397  Sum_probs=40.1

Q ss_pred             CCceeeeeccccCcCceEEecCCccccccccCcCccCCCCCCCCcceeeccCCCC
Q 017166           57 KHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD  111 (376)
Q Consensus        57 RH~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~iH~aN~la~rH~Rvpv~~~~~  111 (376)
                      .+.|...|..+...+..+||..|...+|..|....++     ..|+-++|...+.
T Consensus         7 ~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H-----k~H~~~~i~~a~~   56 (71)
T d2djaa1           7 THLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH-----RDHQVASLNDRFE   56 (71)
T ss_dssp             CCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT-----TTCCBCCCCSSCC
T ss_pred             cccCCCcCcccCCccceeEcCCCCceeccccccCCCC-----CCCcCcCHHHHHH
Confidence            4677788999988899999999999999999764322     2588888876664

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.018  Score=39.30  Aligned_cols=44  Identities=25%  Similarity=0.475  Sum_probs=36.2

Q ss_pred             CceeeeeccccCcCceEEecCCccccccccCcC-ccCCCCCCCCcceeecc
Q 017166           58 HARVWMCEVCEQAPAAVTCKADAAALCVTCDND-IHSANPLARRHERLPIE  107 (376)
Q Consensus        58 H~Rv~LCd~C~~apA~v~C~~D~a~LC~~CD~~-iH~aN~la~rH~Rvpv~  107 (376)
                      |.|..+|..+...+-.+||..|...+|..|... .|.      .|+-.+|.
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~   46 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS   46 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence            778889999998899999999999999999654 453      47666654

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.028  Score=38.82  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=35.5

Q ss_pred             eeeccccCcCceEEecCCccccccccCcC-ccCCCCCCCCcceeeccCCCC
Q 017166           62 WMCEVCEQAPAAVTCKADAAALCVTCDND-IHSANPLARRHERLPIEPFFD  111 (376)
Q Consensus        62 ~LCd~C~~apA~v~C~~D~a~LC~~CD~~-iH~aN~la~rH~Rvpv~~~~~  111 (376)
                      |+|..+...+..+||..|...+|..|... .|      +.|.-.+|..++.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~~a~~   46 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVFQ   46 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTCCS
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHHHHHH
Confidence            58999988899999999999999999654 45      2487777776653

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.098  Score=34.37  Aligned_cols=38  Identities=26%  Similarity=0.642  Sum_probs=29.8

Q ss_pred             eeeccccCcCceEEecCCccccccccCcC-ccCCCCCCCCcceeec
Q 017166           62 WMCEVCEQAPAAVTCKADAAALCVTCDND-IHSANPLARRHERLPI  106 (376)
Q Consensus        62 ~LCd~C~~apA~v~C~~D~a~LC~~CD~~-iH~aN~la~rH~Rvpv  106 (376)
                      .+|..++ .+-.+||..|...+|..|... .|      +.|.-+||
T Consensus         2 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           2 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             CcchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            3688885 678999999999999999754 45      34777775

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=86.57  E-value=0.18  Score=32.86  Aligned_cols=36  Identities=33%  Similarity=0.705  Sum_probs=27.2

Q ss_pred             eccccCcCceEEecCCccccccccCcC-ccCCCCCCCCcceeec
Q 017166           64 CEVCEQAPAAVTCKADAAALCVTCDND-IHSANPLARRHERLPI  106 (376)
Q Consensus        64 Cd~C~~apA~v~C~~D~a~LC~~CD~~-iH~aN~la~rH~Rvpv  106 (376)
                      |+.++ .+-.+||..|...+|..|... -|      +.|.-+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            66775 578999999999999999653 35      34666664