Citrus Sinensis ID: 017168

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------

MFHLLFYYAAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHEEcccEEEccccccccccccccccccccccccccccEEccccEEEEEEccccccccEEEcccccccHHHHHHHcccccccccccccEEEcccccccccHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

cccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccHHcccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

MFHLLFYYAAELLTTNKLSELACLALYLMYEKkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAgslfqqypydipteaFTFEIFKQAFVAVQSCVVHLQKVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVVdrpykagesivvwcgpqpnskllinygfvdednpydRLVVEAAlntedpqyqdKRMVAQRNGKLSVQVFHVHAGrekeaisdmlpylrlgyvsdtsEMQSVIsslgpicpvspcmeRAVLDQLADYFKARlagypatlsedeamltdynlhpkkrVATQLVRMEKKMLNACLQVTADMIMllpdvtvspcpapyaplln

MFHLLFYYAAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGEsivvwcgpqpNSKLLINYGFVDEDNPYDRLVVEAALntedpqyqDKRMVAQRNGKLSVQVFHVHAGrekeaisdmlPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTvspcpapyaplln

MFHLLFYYAAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

*FHLLFYYAAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNT**********VAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCP********

*FHLLFYYAAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLS*************KKRVATQLVRMEKKMLNACLQVTAD**********************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		376	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.872	0.563	0.238	6e-16
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.837	0.530	0.235	2e-15
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.837	0.529	0.235	5e-15
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.837	0.534	0.241	8e-15
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.837	0.529	0.241	8e-15
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.837	0.529	0.241	9e-15
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.837	0.529	0.241	1e-14
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.837	0.530	0.238	3e-14
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.837	0.535	0.238	4e-14
Q7SXS7		596	Histone-lysine N-methyltr	yes	no	0.819	0.516	0.243	1e-13

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 164/365 (44%), Gaps = 37/365 (10%)

Query: 23  CLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEIL 82
            LA +L+ E+     SFWLPYI+ L  +        ++PL ++E E+ YL  +    ++ 
Sbjct: 156 TLAFHLLCERAD-PNSFWLPYIKTLPNE-------YDTPLYFNEDEVQYLQSTQAILDVF 207

Query: 83  ERAEGIKREYNELDTVWFMAGSLFQQYPY--DIP-TEAFTFEIFKQAFVAVQSCVVHLQK 139
            + +   R+Y      +F    + Q +P    +P  ++FTF+ ++ A  +V +    +  
Sbjct: 208 SQYKNTARQY-----AYFY--KVIQTHPNANKLPLKDSFTFDDYRWAVSSVMTRQNQIPT 260

Query: 140 VSLAR-RFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSK 198
              +R   AL+PL       +          DD  + V  + +K+GE I ++ G + N++
Sbjct: 261 EDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFKSGEQIYIFYGTRSNAE 320

Query: 199 LLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAIS 258
            +I+ GF  E+N +DR+ ++  ++  D  Y  K  V  R G  +  VF +H   E    +
Sbjct: 321 FVIHNGFFFENNLHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHV-TEPPISA 379

Query: 259 DMLPYLRL---------GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKAR-- 307
            +L +LR+         G++     +  + +      PVS   E  +  +L  + +AR  
Sbjct: 380 QLLAFLRVFCMNEDELKGHLIGDHAIDKIFTLGNSEFPVS--WENEI--KLWTFLEARAS 435

Query: 308 --LAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVS 365
             L  Y  T+ +D  +L   ++     +A +L R+EK++L   L+  +D   L    +  
Sbjct: 436 LLLKTYKTTVEDDNKVLEQPDMTFHSAMAIKLRRVEKEILEKALKSASDNRKLYSKNSEE 495

Query: 366 PCPAP 370
             P P
Sbjct: 496 GTPLP 500

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q7SXS7\|SETD3_DANRE Histone-lysine N-methyltransferase setd3 OS=Danio rerio GN=setd3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		376
225452167		509	PREDICTED: histone-lysine N-methyltransf	0.976	0.721	0.885	0.0
359488614		515	PREDICTED: histone-lysine N-methyltransf	0.976	0.712	0.885	0.0
296090251		428	unnamed protein product [Vitis vinifera]	0.973	0.855	0.887	0.0
224117488		502	SET domain protein [Populus trichocarpa]	0.976	0.731	0.869	0.0
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.973	0.702	0.866	0.0
356571407		502	PREDICTED: probable ribulose-1,5 bisphos	0.973	0.729	0.838	0.0
356511552		503	PREDICTED: probable ribulose-1,5 bisphos	0.973	0.727	0.836	0.0
357497055		501	SET domain protein [Medicago truncatula]	0.973	0.730	0.825	0.0
22326803		514	Rubisco methyltransferase family protein	0.976	0.714	0.817	1e-180
297807453		516	SET domain-containing protein [Arabidops	0.976	0.711	0.814	1e-179

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/367 (88%), Positives = 342/367 (93%)

Query: 10  AELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETEL 69
           AELLTTNKLSELACLALYLMYEKKQGKKSFW PYIRELDRQRGRGQLAVESPLLWSE+EL
Sbjct: 143 AELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIRELDRQRGRGQLAVESPLLWSESEL 202

Query: 70  AYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVA 129
           AYLTGSPTKAE+LERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAF FEIFKQAFVA
Sbjct: 203 AYLTGSPTKAEVLERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFPFEIFKQAFVA 262

Query: 130 VQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVV 189
           +QSCVVHLQKVSLARRFALVPLGPPLLAY S CKAMLAAVD +VQLVVDRPYKAGESIVV
Sbjct: 263 IQSCVVHLQKVSLARRFALVPLGPPLLAYRSNCKAMLAAVDGSVQLVVDRPYKAGESIVV 322

Query: 190 WCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVH 249
           WCGPQPNSKLL+NYGFVDEDN YDR+VVEAALNTEDPQYQDKRMVAQRNGKL+VQ FHV 
Sbjct: 323 WCGPQPNSKLLLNYGFVDEDNSYDRIVVEAALNTEDPQYQDKRMVAQRNGKLTVQKFHVS 382

Query: 250 AGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLA 309
            G+E+EA+SDMLPYLRLGYVSD SEMQSVISS GPICPVSPCMERAVLDQL DYF+ RLA
Sbjct: 383 VGKEREAVSDMLPYLRLGYVSDPSEMQSVISSQGPICPVSPCMERAVLDQLVDYFERRLA 442

Query: 310 GYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPA 369
           GYP T+SEDE +L D NL+PKK VATQLVR+EKKMLNACL+ T D+I  LPD TVSPCPA
Sbjct: 443 GYPTTMSEDECLLADSNLNPKKLVATQLVRLEKKMLNACLKATVDLINQLPDHTVSPCPA 502

Query: 370 PYAPLLN 376
           PY PLL 
Sbjct: 503 PYTPLLK 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356571407\|ref\|XP_003553868.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 1 [Glycine max] gi\|356571409\|ref\|XP_003553869.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356511552\|ref\|XP_003524489.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		376
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.973	0.712	0.786	2.6e-157
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.848	0.632	0.276	3.5e-16
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.835	0.528	0.233	2.4e-13
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.835	0.528	0.230	2.4e-13
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.832	0.526	0.236	4.1e-13
UNIPROTKB\|B7ZUF3		582	setd3 "Histone-lysine N-methyl	0.867	0.560	0.238	5.1e-13
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.835	0.527	0.230	5.3e-13
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.835	0.527	0.230	5.3e-13
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.837	0.653	0.251	5.9e-13
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.835	0.527	0.230	6.9e-13

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
 Identities = 288/366 (78%), Positives = 316/366 (86%)

Query:    10 AELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETEL 69
             AELLTTNKLSELACLALYLMYEKKQGKKS W PYIRELDRQRGRGQL  ESPLLWSE EL
Sbjct:   148 AELLTTNKLSELACLALYLMYEKKQGKKSVWYPYIRELDRQRGRGQLDAESPLLWSEAEL 207

Query:    70 AYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVA 129
              YLTGSPTKAE+LERAEGIKREYNELDTVWFMAGSLFQQYP+DIPTEAF+FEIFKQAFVA
Sbjct:   208 DYLTGSPTKAEVLERAEGIKREYNELDTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVA 267

Query:   130 VQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV 189
             +QSCVVHLQ V LARRFALVPLGPPLLAY S CK               RPYKAG+ IVV
Sbjct:   268 IQSCVVHLQNVGLARRFALVPLGPPLLAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVV 327

Query:   190 WCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVH 249
             WCGPQPN+KLL+NYGFVDEDNPYDR++VEAALNTEDPQYQDKRMVAQRNGKLS QVF V 
Sbjct:   328 WCGPQPNAKLLLNYGFVDEDNPYDRVIVEAALNTEDPQYQDKRMVAQRNGKLSQQVFQVR 387

Query:   250 AGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLA 309
              G+E+EA+ DMLPYLRLGY+SD SEMQSVISS GP+CP+SPCMERAVLDQLA+YF  RL+
Sbjct:   388 VGKEREAVQDMLPYLRLGYMSDPSEMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLS 447

Query:   310 GYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPA 369
             GYP T  ED+A+L D +L P+KRVAT+LV++EKK+L ACL  T D++  LPD  +SPCPA
Sbjct:   448 GYPTTPKEDDALLADPSLSPRKRVATRLVQLEKKILVACLTTTVDLLNQLPDTAISPCPA 507

Query:   370 PYAPLL 375
             PYAP L
Sbjct:   508 PYAPSL 513

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		376
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	4e-28

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  106 bits (266), Expect = 4e-28
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 221 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVIS 280
           L+  DP Y+DK  + +RNG L    F +          ++L YLRL  +SD         
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSW--ELLAYLRLLCLSDEELTAWKSV 58

Query: 281 SLGPIC-----PVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 335
            LG +      P+SP  E   L  L    K  L+ YP TL EDEA+L   NL  + R+A 
Sbjct: 59  LLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAV 118

Query: 336 QLVRMEKKML 345
           +L   EK++L
Sbjct: 119 RLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		376
KOG1337		472	consensus N-methyltransferase [General function pr	100.0
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.96
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.81
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	98.93
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.74
KOG2589		453	consensus Histone tail methylase [Chromatin struct	91.21
KOG1085		392	consensus Predicted methyltransferase (contains a	91.12

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.3e-35  Score=295.72  Aligned_cols=326  Identities=34%  Similarity=0.431  Sum_probs=261.8

Q ss_pred             HHHHHHHHHHHhcCCCCCChhhHhhcccccCCCccccCCCCCCCHhhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 017168           22 ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFM  101 (376)
Q Consensus        22 ~~Lal~Ll~E~~~~~~S~w~pYl~~LP~~~~~~~~~~~~p~~w~~~el~~L~gs~l~~~~~~~~~~~~~~y~~~~~~~~~  101 (376)
                      .++++++++++..+..|.|++|+.+||.       .+++|++|..+++..|.+++....+..+...++..+..+..++..
T Consensus       112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (472)
T KOG1337|consen  112 IALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS  184 (472)
T ss_pred             HHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence            7899999999998888999999999999       579999999999999999999999998888888877666654332


Q ss_pred             hccccccCCCCCCCCCcchhhHHHHHHhhccceeecccc------ccccceeeeecCCCccCCCCcCceeEeeeCCeEEE
Q 017168          102 AGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQL  175 (376)
Q Consensus       102 ~~~~~~~~~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~------~~~~~~~LvP~~D~lNhh~~~~~~~~~~~~~~~~~  175 (376)
                      ....+....    .+.+|++.|.||+++|.||+|+.+..      ......+|+|++||+||......+.++..++.+.+
T Consensus       185 ~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l  260 (472)
T KOG1337|consen  185 HPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVEL  260 (472)
T ss_pred             ccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEE
Confidence            222222221    23389999999999999999997633      12346899999999986444446677777789999


Q ss_pred             EEeccCCCCCeEEcccCCCChHhHhhhcCcccCCCCCCeEEEEeecCCCCccHHHHHHHHHHcCCccceEEEEeeCCccc
Q 017168          176 VVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKE  255 (376)
Q Consensus       176 ~a~~~i~~Geei~~~YG~~~N~~lL~~YGFv~~~Np~D~v~l~~~~~~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~  255 (376)
                      ++.++|++||||||+||+++|++||++||||.++||+|.|.+.+.+...++.+..|.+.+..++......|.+...+.+.
T Consensus       261 ~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (472)
T KOG1337|consen  261 VAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPV  340 (472)
T ss_pred             EEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999998877788877776432


Q ss_pred             hhhhhhhHhHhhcC---CChHHHHHHHH----h---cCCCCCCCHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHhhcc
Q 017168          256 AISDMLPYLRLGYV---SDTSEMQSVIS----S---LGPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEAMLTD  324 (376)
Q Consensus       256 ~~~~ll~~lRv~~~---~~~~el~~~~~----~---~~~~~~~s~~~E~~~~~~L~~~-l~~~L~~y~ttieeD~~~L~~  324 (376)
                        .+++...++..+   ..+.++.....    .   .....+++..+|...+..+... +...+..+.+++++++..+.+
T Consensus       341 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~  418 (472)
T KOG1337|consen  341 --SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKD  418 (472)
T ss_pred             --hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcc
Confidence              222222222222   22212222111    1   1235677889999999999998 888889999999999999998


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017168          325 YNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLP  360 (376)
Q Consensus       325 ~~ls~r~~~A~~~R~~eK~iL~~~l~~l~~~~~~l~  360 (376)
                      ..++....++..++..+|+||.+++..+....+.+.
T Consensus       419 ~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~  454 (472)
T KOG1337|consen  419 NILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLLH  454 (472)
T ss_pred             cccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhcc
Confidence            888889999999999999999999999986666664

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		376
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		1e-14
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		1e-05
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		1e-05

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 153/344 (44%), Gaps = 29/344 (8%) Query: 23 CLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEIL 82 LA +L+ E+ SFW PYI+ L + ++PL + E E+ YL + ++ Sbjct: 155 ALAFHLLCERA-SPNSFWQPYIQTLPSE-------YDTPLYFEEDEVRYLQSTQAIHDVF 206 Query: 83 ERAEGIKREYNELDTVWFMAGSLFQQYPY--DIP-TEAFTFEIFKQAFVAVQSCVVHLQK 139 + + R+Y +F + Q +P+ +P ++FT+E ++ A +V + + Sbjct: 207 SQYKNTARQY-----AYFY--KVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQNQIPT 259 Query: 140 VSLAR-RFALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSK 198 +R AL+PL + + ++AGE I ++ G + N++ Sbjct: 260 EDGSRVTLALIPLWDXCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAE 319 Query: 199 LLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAIS 258 +I+ GF ++N +DR+ ++ ++ D Y K V R G + VF +H E + Sbjct: 320 FVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFALHF-TEPPISA 378 Query: 259 DMLPYLRL---------GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLA 309 +L +LR+ ++ S + + + PVS E + L D L Sbjct: 379 QLLAFLRVFCXTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLK 438 Query: 310 GYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTA 353 Y T+ ED+++L +++L + + A +L EK++L ++ A Sbjct: 439 TYKTTIEEDKSVLKNHDLSVRAKXAIKLRLGEKEILEKAVKSAA 482

PyMOL of 3smt

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		376
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	2e-63
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-58
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	7e-48
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  210 bits (534), Expect = 2e-63
 Identities = 77/349 (22%), Positives = 150/349 (42%), Gaps = 23/349 (6%)

Query: 18  LSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPT 77
                 LA +L+ E+     SFW PYI+ L  +        ++PL + E E+ YL  +  
Sbjct: 150 AMGNIALAFHLLCERA-SPNSFWQPYIQTLPSE-------YDTPLYFEEDEVRYLQSTQA 201

Query: 78  KAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHL 137
             ++  + +   R+Y     V                 ++FT+E ++ A  +V +    +
Sbjct: 202 IHDVFSQYKNTARQYAYFYKVIQT----HPHANKLPLKDSFTYEDYRWAVSSVMTRQNQI 257

Query: 138 QKVSLAR-RFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPN 196
                +R   AL+PL       +          DD  + V  + ++AGE I ++ G + N
Sbjct: 258 PTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSN 317

Query: 197 SKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEA 256
           ++ +I+ GF  ++N +DR+ ++  ++  D  Y  K  V  R G  +  VF +H       
Sbjct: 318 AEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEP-PI 376

Query: 257 ISDMLPYLRLGYVSD---------TSEMQSVISSLGPICPVSPCMERAVLDQLADYFKAR 307
            + +L +LR+  +++          S +  + +      PVS   E  +   L D     
Sbjct: 377 SAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLL 436

Query: 308 LAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMI 356
           L  Y  T+ ED+++L +++L  + ++A +L   EK++L   ++  A   
Sbjct: 437 LKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNR 485

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		376
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	98.37
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	98.36
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.24
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.66
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	96.71
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	96.69
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	96.28
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	96.02
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	95.8
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	95.26
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	95.25
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	95.14
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	94.69
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	94.34
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	94.28
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	94.2
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	93.7
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	93.63
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	93.35
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	92.13
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	91.95
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	90.02
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	82.78

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=4.8e-61  Score=483.35  Aligned_cols=336  Identities=24%  Similarity=0.364  Sum_probs=287.2

Q ss_pred             cchhhhhccCCC---ChhHHHHHHHHHHHhcCCCCCChhhHhhcccccCCCccccCCCCCCCHhhhhcccCCchHHHHHH
Q 017168            7 YYAAELLTTNKL---SELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILE   83 (376)
Q Consensus         7 s~~~~~l~~~~l---~~~~~Lal~Ll~E~~~~~~S~w~pYl~~LP~~~~~~~~~~~~p~~w~~~el~~L~gs~l~~~~~~   83 (376)
                      |.+++++....+   .++..|+++|++|+. |+.|+|+||+++||+       .+++|++|+++|++.|+||++...+.+
T Consensus       136 s~l~~~~~~~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~-------~~~~pl~w~~eel~~L~gt~l~~~v~~  207 (497)
T 3smt_A          136 SVLGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPS-------EYDTPLYFEEDEVRYLQSTQAIHDVFS  207 (497)
T ss_dssp             STTHHHHHHCHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCS-------CCCSGGGCCHHHHHTTSSSSHHHHHHH
T ss_pred             hhcccccccccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCC-------CCCCCCcCCHHHHhhccCCcHHHHHHH
Confidence            445655554322   356789999999995 899999999999999       689999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccccCCCC--CC-CCCcchhhHHHHHHhhccceeecccccc-ccceeeeecCCCccCCC
Q 017168           84 RAEGIKREYNELDTVWFMAGSLFQQYPYD--IP-TEAFTFEIFKQAFVAVQSCVVHLQKVSL-ARRFALVPLGPPLLAYS  159 (376)
Q Consensus        84 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~~-~~~~t~~~f~wA~~~v~SRa~~~~~~~~-~~~~~LvP~~D~lNhh~  159 (376)
                      +.+.+.++|..+...       +..+|..  ++ .+.+|+++|+||+++|+||+|.++.... ....+|||++||+||.+
T Consensus       208 ~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~  280 (497)
T 3smt_A          208 QYKNTARQYAYFYKV-------IQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTN  280 (497)
T ss_dssp             HHHHHHHHHHHHHHH-------C----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECS
T ss_pred             HHHHHHHHHHHHHHH-------HHhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCC
Confidence            888888999877643       3444432  22 3568999999999999999998864321 12579999999999766


Q ss_pred             CcCceeEeeeCCeEEEEEeccCCCCCeEEcccCCCChHhHhhhcCcccCCCCCCeEEEEeecCCCCccHHHHHHHHHHcC
Q 017168          160 SKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNG  239 (376)
Q Consensus       160 ~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~~N~~lL~~YGFv~~~Np~D~v~l~~~~~~~d~~~~~k~~lL~~~g  239 (376)
                      ..+++.|+.+++.+++++.++|++||||||+||+++|++||.+|||++++||+|.|.|++.++.+|+++..|.++|+.+|
T Consensus       281 ~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~n~~Ll~~YGFv~~~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~g  360 (497)
T 3smt_A          281 GLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAG  360 (497)
T ss_dssp             CSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCCHHHHHHHHSCCCTTCTTCEEEEEEECCTTSTTHHHHHHHHHHTT
T ss_pred             cccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCChHHHHHHCCCCCCCCCCceEEEEecCCCcchhHHHHHHHHHHcC
Confidence            55667888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceEEEEeeCCccchhhhhhhHhHhhcCCChHHHHHHHHhc----------CCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 017168          240 KLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSL----------GPICPVSPCMERAVLDQLADYFKARLA  309 (376)
Q Consensus       240 ~~~~~~f~l~~~~~~~~~~~ll~~lRv~~~~~~~el~~~~~~~----------~~~~~~s~~~E~~~~~~L~~~l~~~L~  309 (376)
                      +.....|.+..++ .+++.+|++++|+++++ ++++..+....          ....|+|.+||.+++++|...|..+|+
T Consensus       361 l~~~~~f~l~~~~-~~~~~~Ll~~LRvl~~~-~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~  438 (497)
T 3smt_A          361 IPTSSVFALHFTE-PPISAQLLAFLRVFCMT-EEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLK  438 (497)
T ss_dssp             CCSEEEEEEESSS-SCSCHHHHHHHHHHTCC-HHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceeeeecCC-CCCCHHHHHHHHHHhCC-HHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHH
Confidence            9887788887664 35789999999999996 68888775432          124689999999999999999999999


Q ss_pred             cCCCChHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017168          310 GYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL  359 (376)
Q Consensus       310 ~y~ttieeD~~~L~~~~ls~r~~~A~~~R~~eK~iL~~~l~~l~~~~~~l  359 (376)
                      .|+||+++|+++|+++.++.|.++|+++|+|||+||+++++.++.....+
T Consensus       439 ~Y~TtieeDe~lL~~~~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~~~  488 (497)
T 3smt_A          439 TYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYY  488 (497)
T ss_dssp             TCSSCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888899999999999999999999999998766543

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		376
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	1e-27
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	3e-25

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure


class: All alpha proteins
fold: RuBisCo LSMT C-terminal, substrate-binding domain
superfamily: RuBisCo LSMT C-terminal, substrate-binding domain
family: RuBisCo LSMT C-terminal, substrate-binding domain
domain: RuBisCo LSMT C-terminal, substrate-binding domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  105 bits (263), Expect = 1e-27
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 221 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSE--MQSV 278
           ++  DP + DK  VA+ NG      F +   R       +LPYLRL  +  T    ++S+
Sbjct: 8   ISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLRLVALGGTDAFLLESL 65

Query: 279 ISS--LGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 335
                 G +   VS   E  +   + +  K+ LAGY  T+ +D  +  + NL  +  +A 
Sbjct: 66  FRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELK-EGNLDSRLAIAV 124

Query: 336 QLVRMEKKMLNACLQ 350
            +   EK +L     
Sbjct: 125 GIREGEKMVLQQIDG 139

PyMOL of d2h2ja1

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		376
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	99.97
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.87
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.49
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	96.64
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	94.75
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	94.62

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.97  E-value=1.2e-30  Score=239.57  Aligned_cols=185  Identities=22%  Similarity=0.309  Sum_probs=148.9

Q ss_pred             cchhhhhccCCCChhHHHHHHHHHHHhcCCCCCChhhHhhcccccCCCccccCCCCCCCHhhhhcccCCchHHHHHHHHH
Q 017168            7 YYAAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAE   86 (376)
Q Consensus         7 s~~~~~l~~~~l~~~~~Lal~Ll~E~~~~~~S~w~pYl~~LP~~~~~~~~~~~~p~~w~~~el~~L~gs~l~~~~~~~~~   86 (376)
                      +.+++.+.  ...++..|+++|++|+. +..|.|+||+++||+       ...+|++|+.++++.|+|+.+...+....+
T Consensus        64 ~~~~~~~~--~~~~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  133 (261)
T d2h2ja2          64 SEIGRVCS--ELKPWLSVILFLIRERS-REDSVWKHYFGILPQ-------ETDSTIYWSEEELQELQGSQLLKTTVSVKE  133 (261)
T ss_dssp             SGGGTTTT--TSCHHHHHHHHHHHHHH-CTTCTTHHHHTTSCS-------CCSCGGGCCHHHHHTTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHh--hcCcHHHHHHHHHHHHh-CCCCchhhhhhcccc-------ccCCcccCCHHHHHHcCCcHHHHHHHHHHH
Confidence            34444443  35789999999999995 899999999999999       578999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccCCCCCCCCCcchhhHHHHHHhhccceeeccccccccceeeeecCCCccCCCCcCceeE
Q 017168           87 GIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAML  166 (376)
Q Consensus        87 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~~~~~~~~LvP~~D~lNhh~~~~~~~~  166 (376)
                      .+.++|..+...      ++...+.. ....++++.|.||+++|.||+|..++   ..+.+|+|++||+|| +..+|+.+
T Consensus       134 ~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~a~~~v~sr~~~~~~---~~~~~l~P~~d~~NH-sc~pn~~~  202 (261)
T d2h2ja2         134 YVKNECLKLEQE------IILPNKRL-FPDPVTLDDFFWAFGILRSRAFSRLR---NENLVVVPMADLINH-SAGVTTED  202 (261)
T ss_dssp             HHHHHHHHHHHH------TTTTTTTT-CCSCCCHHHHHHHHHHHHHHSBCCC------CCBCCTTGGGCEE-CSSCCSCC
T ss_pred             HHHHHHHHHHHH------HHhhhhhh-ccCccCHHHHHHHHHHhhcccccccc---cccccchhhhHHhhc-CCCCCccc
Confidence            999999887653      23333322 23458999999999999999998753   246799999999996 54444432


Q ss_pred             -----------eeeCCeEEEEEeccCCCCCeEEcccCC-CChHhHhhhcCcccCC-CCC
Q 017168          167 -----------AAVDDAVQLVVDRPYKAGESIVVWCGP-QPNSKLLINYGFVDED-NPY  212 (376)
Q Consensus       167 -----------~~~~~~~~~~a~~~i~~Geei~~~YG~-~~N~~lL~~YGFv~~~-Np~  212 (376)
                                 ...++.++++|.|+|++||||||+||+ ++|++||.+||||+++ |||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         203 HAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             CCCC-----------CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             ccccccCcccccCCCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence                       223568999999999999999999995 7999999999999876 886

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure