Citrus Sinensis ID: 017170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
Protein Sequence
MSPPLLLGVEEEGQSNVSLMASSPSDCISQNVSGLQERNYLGLSDCSSVDSSAASSLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEcccccccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEcccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEccccccccccccccHcccccccccccccccccccccccccccccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccccHcccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHHccEEEcccccccccccccccHHHHHHHccccccEccEEcccccEEEEccccHHHHHHHHHHHHEEcccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
mspplllgveeegqsnvslmasspsdcisqnvsglqernylglsdcssvdssaasslpvdnknklnLKATElrlglpgsesperepdlsllssgkldekplfpllpskdgicpgsqknvvsgnkrgfsdtmdrFSEVKssvyteknwmfsvgpdsespqsvgqgkfpgnsgmnpmlrptGAQQAIMKEMApnalersrpaangthnkasasnnnmsapaakaqvvgwppirsfrknslattsknndevdgkpgpgaLFIKVsmdgapylrkvdlrtytnYGELSSALEKMFscftigqcgsheapgremlsesklkdllhgseyvltyedkdgdwmlvgdvpweMFIDSCKRLKImkgsdaiglapramekskirn
Flexible Loop (DISEMBL)
MSPPLLLGVEEEGQSNVSLMASSPSDCISQNVSGLQERNYLGLSDCSSVDSsaasslpvdnknklnlKATELrlglpgsesperePDLSLLSSGKLDEKPLFPLlpskdgicpgsqknvvsgnkrgfsdtmdrfSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHNKAsasnnnmsapaaKAQVVGWPPIRSFRKnslattsknndevdgkpgpGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKgsdaiglapramekskirn
Low Complexity Region (SEG)
MSPPLLLGVEEEGQSNVSLMASSPSDCISQNVSGLQERNYLGLsdcssvdssaassLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHnkasasnnnmsapaakaQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN
Disordered region (IsUnstruct)
*************************************************************************************************************************************************NWM***********************************************************************************************************ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGS*************LKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAI**************
Disordered Region (DISOPRED)
******L***************************************************************ELRLGLPG***********************************************************************************************************************************************************************************FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIG************************SEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIM********************
Disordered Region (DISEMBL)
MSPPLLLGVEEEGQSNVSLMASSPSDCISQNVSGLQERNYLGLSD************PVDNKNKLNLKATELRLGL*************LLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSV************GKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPR*********
Disordered Region (DISPRO)
*****LLG****GQSNVSLMASSPSDCISQNVSGLQ*R***GL********************KLNLKATELRLGLPGS****************LDEKPLFPLLPSK*************************************************************************************************************PAAKAQVVGWPPIRSFRKNSLATT************PGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAME******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPPLLLGVEEEGQSNVSLMASSPSDCISQNVSGLQERNYLGLSDCSSVDSSAASSLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	376	2.2.26 [Sep-21-2011]
Q38827	338	Auxin-responsive protein	yes	no	0.877	0.976	0.662	1e-129
Q38826	321	Auxin-responsive protein	no	no	0.787	0.922	0.630	1e-108
Q9ZSY8	305	Auxin-responsive protein	no	no	0.779	0.960	0.487	2e-77
P0C132	277	Auxin-responsive protein	yes	no	0.412	0.559	0.678	2e-56
Q5Z749	266	Auxin-responsive protein	no	no	0.406	0.575	0.651	6e-55
P13089	243	Auxin-induced protein AUX	no	no	0.422	0.654	0.631	3e-53
Q38832	228	Auxin-responsive protein	no	no	0.422	0.697	0.629	2e-52
P93830	229	Auxin-responsive protein	no	no	0.428	0.703	0.604	3e-51
O24407	236	Auxin-responsive protein	no	no	0.414	0.661	0.606	6e-51
Q75GB1	257	Auxin-responsive protein	no	no	0.369	0.540	0.658	1e-50

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/370 (66%), Positives = 286/370 (77%), Gaps = 40/370 (10%)

Query: 10  EEEGQSNVSLMASSP-SDCISQN-VSGLQERNYLGLSDCSSVDSSAASSLPVDNKNKLNL 67
           EEE QSNVS+ +SSP S+CIS+N + GL+E NYLGLSDCSSV SS  S L  D+K  ++L
Sbjct: 4   EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKATISL 63

Query: 68  KATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGF 127
           KATEL LGLPGS+SP R+ +L+LLS  KLDEKP FPLLPSKD IC  SQKN  SGNKRGF
Sbjct: 64  KATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGF 123

Query: 128 SDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMK 187
           SDTMD+F+E KSSVYTEKNWMF   P++ + QSV +   P N        P G       
Sbjct: 124 SDTMDQFAEAKSSVYTEKNWMF---PEAAATQSVTKKDVPQNI-------PKG------- 166

Query: 188 EMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDE 247
                              ++S +NN+ S PAAKAQ+VGWPP+RS+RKN+LATT KN+DE
Sbjct: 167 -------------------QSSTTNNSSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDE 207

Query: 248 VDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGR 307
           VDG+PG GALF+KVSMDGAPYLRKVDLR+YTNYGELSSALEKMF+ FT+GQCGS+ A G+
Sbjct: 208 VDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGK 267

Query: 308 EMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL--A 365
           +MLSE+KLKDLL+G +YVLTYEDKDGDWMLVGDVPWEMFID CK+LKIMKG DAIGL  A
Sbjct: 268 DMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAA 327

Query: 366 PRAMEKSKIR 375
           PRAMEKSK+R
Sbjct: 328 PRAMEKSKMR 337

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/341 (63%), Positives = 244/341 (71%), Gaps = 45/341 (13%)

Query: 35  LQERNYLGLSDCSSVDSSAASSLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSG 94
           L+ERNYLGLSDCSSVDSS   +  V  K+ LN KATELRLGLP S+SPERE D  LLS  
Sbjct: 19  LKERNYLGLSDCSSVDSSTIPN--VVGKSNLNFKATELRLGLPESQSPERETDFGLLSPR 76

Query: 95  KLDEKPLFPLLPSKD-GICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGP 153
             DEK LFPLLPSKD G      KNVVSGNKRGF+DT D FS VK SV            
Sbjct: 77  TPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVR----------- 125

Query: 154 DSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNN 213
                        PG  G+N ML P       +K+++ +  E    A  G +N       
Sbjct: 126 -------------PGG-GINMMLSPK------VKDVSKSIQEERSHAKGGLNN------- 158

Query: 214 NMSAPAAKAQVVGWPPIRSFRKNSLAT-TSKNNDEVDGKPGPGALFIKVSMDGAPYLRKV 272
              APAAKAQVVGWPPIRS+RKN++A+ TSKN DEVDGKPG G LF+KVSMDGAPYLRKV
Sbjct: 159 ---APAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKV 215

Query: 273 DLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKD 332
           DLRTYT+Y +LSSALEKMFSCFT+GQCG H A GRE +SE KLKDLLHGSE+VLTYEDKD
Sbjct: 216 DLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKD 275

Query: 333 GDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 373
           GDWMLVGDVPWE+F ++C++LKIMKGSD+IGLAP A+EKSK
Sbjct: 276 GDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSK 316

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  290 bits (741), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/357 (48%), Positives = 221/357 (61%), Gaps = 64/357 (17%)

Query: 31  NVSGLQERNYLGLSDCSSVDSSAAS--SLPVDNKNKLNLKATELRLGLPGSESPEREPDL 88
           +VS   E +Y+GLS+  +++++  S  +   DN N LN KATELRLGLPGSESPER    
Sbjct: 2   SVSVAAEHDYIGLSEFPTMEATTMSDKTKTRDNNNGLNFKATELRLGLPGSESPER---- 57

Query: 89  SLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWM 148
                  +D +     L      CP      VSG KR FSD ++              W+
Sbjct: 58  -------VDSR----FLALNKSSCP------VSGAKRVFSDAIN----------DSNKWV 90

Query: 149 FSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAANGTHNKA 208
           FS G  + +   VG G              +G + +++K+        ++PA      K+
Sbjct: 91  FSPG-STTATGDVGSG--------------SGPRTSVVKDGKSTTF--TKPAVPVKEKKS 133

Query: 209 SASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSK----NN---DEVDGKPGPG--ALFI 259
           SA+     APA+KAQVVGWPPIRSFRKNS+A++      NN   +E + K GP    L++
Sbjct: 134 SAT-----APASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYV 188

Query: 260 KVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLL 319
           KVSM+GAPYLRK+DL+TY +Y ELSSALEKMFSCFTIGQ GSH   GR+ L+ES+L DLL
Sbjct: 189 KVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLL 248

Query: 320 HGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
            GSEYV+TYEDKD DWMLVGDVPWEMFI SCK+L+IMK S+AIGLAPR MEK + RN
Sbjct: 249 RGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 127/165 (76%), Gaps = 10/165 (6%)

Query: 219 AAKAQVVGWPPIRSFRKNSLATTS-KNNDEVDGKPGPGAL------FIKVSMDGAPYLRK 271
           A KAQVVGWPP+RS+RKN LA  + K  D  DG             F+KVSMDGAPYLRK
Sbjct: 116 APKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRK 175

Query: 272 VDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDK 331
           VDL+ Y +Y ELS ALEKMFS FTIG CGSH   G   ++ESK+ DLL+GSEYV TYEDK
Sbjct: 176 VDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDK 232

Query: 332 DGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
           DGDWMLVGDVPWEMF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct: 233 DGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5Z749|IAA21_ORYSJ Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1

 Score =  214 bits (546), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/158 (65%), Positives = 123/158 (77%), Gaps = 5/158 (3%)

Query: 224 VVGWPPIRSFRKNSLATTS-----KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYT 278
           VVGWPPIRS+RKN++A +      K++ E    P  G L++KVSMDGAPYLRKVDL+ Y 
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168

Query: 279 NYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV 338
           NY ELS ALEKMFSCFT+G   S+   GR+ LS+ +L DL +G+E VLTYEDKD DWMLV
Sbjct: 169 NYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLV 228

Query: 339 GDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
           GDVPW MF DSC+RL+IMKGSDA+GLAPRA +KSK RN
Sbjct: 229 GDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 122/163 (74%), Gaps = 4/163 (2%)

Query: 216 SAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLR 275
           + P AK QVVGWPP+RSFRKN LA      +E +    P A F+KVSMDGAPYLRKVDL+
Sbjct: 83  AKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLK 142

Query: 276 TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDW 335
            Y +Y ELS +L KMFS FT G C S     ++ ++ESKL DLL+ S+YV TYEDKDGDW
Sbjct: 143 MYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDW 200

Query: 336 MLVGDVPWEMFIDSCKRLKIMKGSDAI--GLAPRAMEKSKIRN 376
           MLVGDVPWEMF++SCKRL+IMKG +AI  GLAPRAM K K R+
Sbjct: 201 MLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 124/162 (76%), Gaps = 3/162 (1%)

Query: 216 SAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGAL-FIKVSMDGAPYLRKVDL 274
           S P AKAQVVGWPP+R++RKN +A       E     G G + F+KVSMDGAPYLRKVDL
Sbjct: 69  SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDL 128

Query: 275 RTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGD 334
           + YT+Y +LS AL KMFS FT+G  G+      + ++ESK+ DLL+ SEYV +YEDKDGD
Sbjct: 129 KMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGD 186

Query: 335 WMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
           WMLVGDVPW MF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct: 187 WMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/167 (60%), Positives = 126/167 (75%), Gaps = 6/167 (3%)

Query: 209 SASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPY 268
           SA   + + P AKAQVVGWPP+RS+RKN + +  K++    G P   A F+KVSMDGAPY
Sbjct: 68  SACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSS----GGP-EAAAFVKVSMDGAPY 122

Query: 269 LRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTY 328
           LRK+DLR Y +Y ELS+AL  MFS FT+G+ G  E    + ++E KL DL++  +YV +Y
Sbjct: 123 LRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEG-MIDFMNERKLMDLVNSWDYVPSY 181

Query: 329 EDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIR 375
           EDKDGDWMLVGDVPW MF+D+CKRL++MKGSDAIGLAPRAMEK K R
Sbjct: 182 EDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/173 (60%), Positives = 128/173 (73%), Gaps = 17/173 (9%)

Query: 218 PAAKAQVVGWPPIRSFRKNSLA----TT---SKNNDEVDGKPG--------PGALFIKVS 262
           P AKAQVVGWPP+RSFRKN ++    TT   ++ ND+  G  G            ++KVS
Sbjct: 65  PPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVS 124

Query: 263 MDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS 322
           MDGAPYLRK+DL+ Y  Y +LS+AL KMFS FTIG  G      ++ ++ESKL DLL+GS
Sbjct: 125 MDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGS 182

Query: 323 EYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIR 375
           +YV TYEDKDGDWMLVGDVPWEMF+DSCKR++IMKGS+AIGLAPRA+EK K R
Sbjct: 183 DYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNR 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GB1|IAA17_ORYSJ Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/155 (65%), Positives = 121/155 (78%), Gaps = 16/155 (10%)

Query: 224 VVGWPPIRSFRKNSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYG 281
           VVGWPPIRS+RKN++AT     + ++ + K G G L++KVSMDGAPYLRKVDL+TY NY 
Sbjct: 117 VVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYK 176

Query: 282 ELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDV 341
           +LS+ALEKMF  FT G+ G         LSES+ KD     EYVLTYEDKDGDWMLVGDV
Sbjct: 177 DLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGDV 222

Query: 342 PWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
           PWEMF +SC+RL+IMKGSDAIGLAPRA++KSK RN
Sbjct: 223 PWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
302398567	373	ARF domain class transcription factor [M	0.981	0.989	0.792	1e-161
255575999	382	transcription factor, putative [Ricinus	0.994	0.979	0.764	1e-154
356496563	359	PREDICTED: auxin-responsive protein IAA8	0.925	0.969	0.696	1e-140
356531397	354	PREDICTED: auxin-responsive protein IAA8	0.922	0.980	0.695	1e-139
2388689	339	GH1 protein [Glycine max]	0.861	0.955	0.714	1e-136
217072382	348	unknown [Medicago truncatula]	0.917	0.991	0.688	1e-135
357517101	356	Indoleacetic acid-induced-like protein [	0.917	0.969	0.688	1e-135
449451363	380	PREDICTED: auxin-responsive protein IAA9	0.994	0.984	0.668	1e-135
388523129	348	unknown [Medicago truncatula]	0.917	0.991	0.686	1e-135
356526729	350	PREDICTED: auxin-responsive protein IAA9	0.914	0.982	0.684	1e-135

>gi|302398567|gb|ADL36578.1| ARF domain class transcription factor [Malus x domestica]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 301/380 (79%), Positives = 322/380 (84%), Gaps = 11/380 (2%)

Query: 1   MSPPLLLGVEEEGQSNVSLMASSPS-DCISQNVSGLQERNYLGLSDCSSVDSSAASSLPV 59
           MSPPLL G EEEGQSN S++A S S DCISQN SGL+ERNYLGLSDCSSVDSS  S+L  
Sbjct: 1   MSPPLL-GGEEEGQSNGSMVAFSRSMDCISQNSSGLKERNYLGLSDCSSVDSSTVSNLSE 59

Query: 60  DNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNV 119
             KN LN KATELRLGLPGS+SPEREPDL LL+SGKLDEKPLFPLLPSKDGIC  SQKN 
Sbjct: 60  GTKNNLNFKATELRLGLPGSQSPEREPDLCLLNSGKLDEKPLFPLLPSKDGICSSSQKN- 118

Query: 120 VSGNKRGFSDTMDRFSEVKSSVYTEKNWMF-SVGPDSESPQSVGQGKFPGNSGMNPML-- 176
             GNKRGF+DTMD FSEVKS+ YTE NWMF + G DSESP+SVGQGKFP NS +N +L  
Sbjct: 119 --GNKRGFADTMDGFSEVKSNAYTEGNWMFHAAGSDSESPESVGQGKFPVNS-INVLLSS 175

Query: 177 RPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKN 236
           RP+G Q  I KE A    E+S     G+HN   ASNN  SAPAAKAQVVGWPPIRSFRKN
Sbjct: 176 RPSGCQPTITKE-ARTKQEQSNATNGGSHNPLGASNNG-SAPAAKAQVVGWPPIRSFRKN 233

Query: 237 SLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTI 296
           SLATTSKNNDEV+GKPGPG LF+KVSMDGAPYLRKVDLRTY+ Y +LSSALEKMFSCFTI
Sbjct: 234 SLATTSKNNDEVNGKPGPGGLFVKVSMDGAPYLRKVDLRTYSTYQDLSSALEKMFSCFTI 293

Query: 297 GQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIM 356
           GQ GSH APGRE LSESKL+DLLHGSEYVLTYEDKDGDWMLVGDVPWEMFID+CKRLKIM
Sbjct: 294 GQYGSHGAPGRERLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIM 353

Query: 357 KGSDAIGLAPRAMEKSKIRN 376
           KGSDAIGLAPRAMEKSK RN
Sbjct: 354 KGSDAIGLAPRAMEKSKNRN 373

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575999|ref|XP_002528895.1| transcription factor, putative [Ricinus communis] gi|223531649|gb|EEF33475.1| transcription factor, putative [Ricinus communis]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 292/382 (76%), Positives = 323/382 (84%), Gaps = 8/382 (2%)

Query: 1   MSPPLLLGVEEEGQSNVSLMASSPS-DCISQNVSGLQERNYLGLSDCSSVDSSAASSLPV 59
           MSPPLL GVE+ GQS VSL+ASSPS DCISQN   L+ERNYLGLSDCSSVDSSA  SL  
Sbjct: 1   MSPPLL-GVEDGGQSKVSLVASSPSVDCISQNGCRLKERNYLGLSDCSSVDSSAVPSLSE 59

Query: 60  DNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDG--ICPGSQK 117
           +N N LNLKATELRLGLPGS SPER+ ++SLL SGKLDEKPLFPLLP KDG  IC   QK
Sbjct: 60  ENNNNLNLKATELRLGLPGSLSPERDTEVSLLISGKLDEKPLFPLLPLKDGHGICSLPQK 119

Query: 118 NVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMF-SVGPDSESPQSVGQGKFPGNSGMNPML 176
           +VVSGNKRGFSDTMD FSEVK S Y+EKNW+F S G +S+SPQSVGQGKF G SG+N ML
Sbjct: 120 HVVSGNKRGFSDTMDGFSEVKGSAYSEKNWLFHSAGTESDSPQSVGQGKFSGASGINTML 179

Query: 177 --RPTGAQQAIMKEMAPNALERSRPAANGTH-NKASASNNNMSAPAAKAQVVGWPPIRSF 233
             RP+G Q  ++KE+A N L+    AAN T  N+   SN++ SAPAAKAQVVGWPPI+SF
Sbjct: 180 SSRPSGPQSTLIKEVAHNVLQDRSLAANATKLNQTGTSNHSGSAPAAKAQVVGWPPIKSF 239

Query: 234 RKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSC 293
           RKN+LATTSKNNDEVDGKPGPG LF+KVSMDGAPYLRKVDLRT++ Y ELS ALEKMFSC
Sbjct: 240 RKNTLATTSKNNDEVDGKPGPGTLFVKVSMDGAPYLRKVDLRTHSTYQELSRALEKMFSC 299

Query: 294 FTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRL 353
           FTIGQCGSH AP RE LSESKL+DLL+GSEY LTYEDKDGDWMLVGDVPWEMFI++CKRL
Sbjct: 300 FTIGQCGSHGAPEREKLSESKLRDLLNGSEYALTYEDKDGDWMLVGDVPWEMFIETCKRL 359

Query: 354 KIMKGSDAIGLAPRAMEKSKIR 375
           KIMK SDAIGLAPRAMEK KI+
Sbjct: 360 KIMKSSDAIGLAPRAMEKFKIK 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496563|ref|XP_003517136.1| PREDICTED: auxin-responsive protein IAA8 [Glycine max]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/386 (69%), Positives = 301/386 (77%), Gaps = 38/386 (9%)

Query: 1   MSPPLLLGVEEEGQSNVSLMASSPS----DCISQNVSGLQERNYLGLSDCSSVDSSAAS- 55
           MSPP ++  EEEG+SNVS   +S S    D  SQN +GL+ERNYLGLSDCSSVDSSA++ 
Sbjct: 2   MSPPAVV-TEEEGRSNVSSTVASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTV 60

Query: 56  -SLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPG 114
            SL  + K  +NLKATELRLGLPGS+SPEREPDL  LS  KLDEKPLFPLLP+KDGIC  
Sbjct: 61  PSLCDEKKENMNLKATELRLGLPGSQSPEREPDLFSLSPAKLDEKPLFPLLPTKDGICLS 120

Query: 115 SQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNP 174
           +QK VVSGNKRGF+DTMD FS                           QGKF GN+GMN 
Sbjct: 121 AQKTVVSGNKRGFADTMDGFS---------------------------QGKFAGNTGMNA 153

Query: 175 ML--RPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRS 232
           ML  RP+GAQ + MKE+     ER     NGT +  + ++ + SAPA+KAQVVGWPPIRS
Sbjct: 154 MLSPRPSGAQPSAMKEIPSKLQERPCSTKNGTGHNHTGASISGSAPASKAQVVGWPPIRS 213

Query: 233 FRKNSLATTS-KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF 291
           FRKNS+ATT+ KNNDEVDGKPG GALF+KVSMDGAPYLRKVDLR+YT Y ELSSALEKMF
Sbjct: 214 FRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMF 273

Query: 292 -SCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSC 350
            SCFT+GQCGSH APGREMLSESKL+DLLHGSEYVLTYEDKDGDWMLVGDVPWEMFID+C
Sbjct: 274 LSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTC 333

Query: 351 KRLKIMKGSDAIGLAPRAMEKSKIRN 376
           KRLKIMKGSDAIGLAPRAMEKSK R+
Sbjct: 334 KRLKIMKGSDAIGLAPRAMEKSKSRS 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531397|ref|XP_003534264.1| PREDICTED: auxin-responsive protein IAA8-like [Glycine max]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/381 (69%), Positives = 296/381 (77%), Gaps = 34/381 (8%)

Query: 1   MSPPLLLGVEEEGQSNVSLMASSPSDCISQNVSGLQERNYLGLSDCSSVDSSAAS--SLP 58
           MSPP L+  EEEG+S V+  +S   DC SQN +GL+ERNYLGLSDCSSVDS A++  SL 
Sbjct: 1   MSPPTLV-TEEEGRSTVASDSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLC 59

Query: 59  VDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKN 118
            + K  +NLKATELRLGLPG +SPEREPDL  LSS KLDEKPLFPLLP+KDGIC   QK 
Sbjct: 60  DEKKENMNLKATELRLGLPGFQSPEREPDLFSLSSPKLDEKPLFPLLPTKDGICSSGQKA 119

Query: 119 VVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPML-- 176
           VVSGNKRGF+DTMD FS                           QGKF GN+GMN +L  
Sbjct: 120 VVSGNKRGFADTMDGFS---------------------------QGKFAGNTGMNAVLSP 152

Query: 177 RPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKN 236
           RP+GAQ + MKE      ER     NGT +  + ++ + SAPA+KAQVVGWPPIRSFRKN
Sbjct: 153 RPSGAQPSAMKETPSKLSERPCSTNNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKN 212

Query: 237 SLATTS-KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMF-SCF 294
           S+ATT+ KNNDEVDGKPG GALF+KVSMDGAPYLRKVDLR+YT Y ELSSALEKMF SCF
Sbjct: 213 SMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCF 272

Query: 295 TIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLK 354
           T+GQCGSH APGREMLSESKL+DLLHGSEYVLTYEDKDGDWMLVGDVPWEMFI++CKRLK
Sbjct: 273 TLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLK 332

Query: 355 IMKGSDAIGLAPRAMEKSKIR 375
           IMKGSDAIGLAPRAMEKSK R
Sbjct: 333 IMKGSDAIGLAPRAMEKSKSR 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2388689|gb|AAB70005.1| GH1 protein [Glycine max]

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/357 (71%), Positives = 283/357 (79%), Gaps = 33/357 (9%)

Query: 26  DCISQNVSGLQERNYLGLSDCSSVDSSAAS--SLPVDNKNKLNLKATELRLGLPGSESPE 83
           D  SQN +GL+ERNYLGLSDCSSVDSSA++  SL  + K  +NLKATELRLGLPGS+SPE
Sbjct: 10  DRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRLGLPGSQSPE 69

Query: 84  REPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYT 143
           REPDL  LS  KLDEKPLFPLLP+KDGIC  +QK VVSGNKRGF+DTMD FS        
Sbjct: 70  REPDLFSLSPAKLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMDGFS-------- 121

Query: 144 EKNWMFSVGPDSESPQSVGQGKFPGNSGMNPML--RPTGAQQAIMKEMAPNALERSRPAA 201
                              QGKF GN+GMN ML  RP+GAQ + MKE+     ER     
Sbjct: 122 -------------------QGKFAGNTGMNAMLSPRPSGAQPSAMKEIPSKLQERPCSTK 162

Query: 202 NGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTS-KNNDEVDGKPGPGALFIK 260
           NGT +  + ++ + SAPA+KAQVVGWPPIRSFRKNS+ATT+ KNNDEVDGKPG GALF+K
Sbjct: 163 NGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVK 222

Query: 261 VSMDGAPYLRKVDLRTYTNYGELSSALEKMF-SCFTIGQCGSHEAPGREMLSESKLKDLL 319
           VSMDGAPYLRKVDLR+YT Y ELSSALEKMF SCFT+GQCGSH APGREMLSESKL+DLL
Sbjct: 223 VSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLL 282

Query: 320 HGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
           HGSEYVLTYEDKDGDWMLVGDVPWEMFID+CKRLKIMKGSDAIGLAPRAMEKSK R+
Sbjct: 283 HGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072382|gb|ACJ84551.1| unknown [Medicago truncatula]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/379 (68%), Positives = 285/379 (75%), Gaps = 34/379 (8%)

Query: 1   MSPPLLLGVEEEGQSNVSLMAS-SPS--DCISQNVSGLQERNYLGLSDCSSVDSSAASSL 57
           MSPPLLL  EEEGQSN S +AS SP   D  SQ  +GL+ERNYLGLSDCSSVDSS   SL
Sbjct: 1   MSPPLLLP-EEEGQSNPSTVASASPQSLDRFSQTAAGLKERNYLGLSDCSSVDSSTVPSL 59

Query: 58  PVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQK 117
             + K  LNLKATELRLGLPGS+SPER+ DL  L+S KLDEKPLFPLLP+KDGIC  SQK
Sbjct: 60  SDEKKENLNLKATELRLGLPGSQSPERDLDLFPLNSTKLDEKPLFPLLPTKDGICSLSQK 119

Query: 118 NVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLR 177
            VVSGNKRGF+DT++ F E K +  T  N + S                          R
Sbjct: 120 TVVSGNKRGFADTLEVFPEAKYTANTRVNILLSP-------------------------R 154

Query: 178 PTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNS 237
           P+GAQ   +KEM    ++ S   ANGT    S      SAPAAKAQVVGWPPIRSFRKNS
Sbjct: 155 PSGAQPTTIKEMPKKVVQESPCTANGTGAPISG-----SAPAAKAQVVGWPPIRSFRKNS 209

Query: 238 LATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIG 297
           LATTSKNNDEVDGKPG  ALF+KVSMDGAPYLRKVDLR YT Y ELSS LEKMFSCFT+G
Sbjct: 210 LATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLG 269

Query: 298 QCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 357
           QCGSH  PG+EMLSESKLKD LHGSEYV+TYEDKDGDWMLVGDVPW+MFID+CKRLKIMK
Sbjct: 270 QCGSHGGPGKEMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMK 329

Query: 358 GSDAIGLAPRAMEKSKIRN 376
           GSDAIGLAPRAMEKSK R+
Sbjct: 330 GSDAIGLAPRAMEKSKSRS 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517101|ref|XP_003628839.1| Indoleacetic acid-induced-like protein [Medicago truncatula] gi|355522861|gb|AET03315.1| Indoleacetic acid-induced-like protein [Medicago truncatula]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/379 (68%), Positives = 285/379 (75%), Gaps = 34/379 (8%)

Query: 1   MSPPLLLGVEEEGQSNVSLMAS-SPS--DCISQNVSGLQERNYLGLSDCSSVDSSAASSL 57
           MSPPLLL  EEEGQSN S +AS SP   D  SQ  +GL+ERNYLGLSDCSSVDSS   SL
Sbjct: 9   MSPPLLLP-EEEGQSNPSTVASASPQSLDRFSQTAAGLKERNYLGLSDCSSVDSSTVPSL 67

Query: 58  PVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQK 117
             + K  LNLKATELRLGLPGS+SPER+ DL  L+S KLDEKPLFPLLP+KDGIC  SQK
Sbjct: 68  SDEKKENLNLKATELRLGLPGSQSPERDLDLFPLNSTKLDEKPLFPLLPTKDGICSLSQK 127

Query: 118 NVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLR 177
            VVSGNKRGF+DT++ F E K +  T  N + S                          R
Sbjct: 128 TVVSGNKRGFADTLEVFPEAKYTANTRVNILLSP-------------------------R 162

Query: 178 PTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNS 237
           P+GAQ   +KEM    ++ S   ANGT    S      SAPAAKAQVVGWPPIRSFRKNS
Sbjct: 163 PSGAQPTTIKEMPKKVVQESPCTANGTGAPISG-----SAPAAKAQVVGWPPIRSFRKNS 217

Query: 238 LATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIG 297
           LATTSKNNDEVDGKPG  ALF+KVSMDGAPYLRKVDLR YT Y ELSS LEKMFSCFT+G
Sbjct: 218 LATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLG 277

Query: 298 QCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 357
           QCGSH  PG+EMLSESKLKD LHGSEYV+TYEDKDGDWMLVGDVPW+MFID+CKRLKIMK
Sbjct: 278 QCGSHGGPGKEMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMK 337

Query: 358 GSDAIGLAPRAMEKSKIRN 376
           GSDAIGLAPRAMEKSK R+
Sbjct: 338 GSDAIGLAPRAMEKSKSRS 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451363|ref|XP_004143431.1| PREDICTED: auxin-responsive protein IAA9-like [Cucumis sativus] gi|449499818|ref|XP_004160925.1| PREDICTED: auxin-responsive protein IAA9-like [Cucumis sativus]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/380 (66%), Positives = 295/380 (77%), Gaps = 6/380 (1%)

Query: 1   MSPPLLLGVEEEGQSNVSLMASSPS-DCISQNVSGLQERNYLGLSDCSSVDSSAASSLPV 59
           MSPPLL  VEE    NV ++A+SPS DC SQN +  +ERNYL LS CSSVDSSA S+L  
Sbjct: 1   MSPPLLNSVEE-ALGNVPVVAASPSMDCHSQNGTKFRERNYLRLSPCSSVDSSAVSNLSE 59

Query: 60  DNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNV 119
           +NK+ LNLKATELRLGLPGS SPER+ + +L+SS + DEK L  LLPS DG     QKN+
Sbjct: 60  ENKSNLNLKATELRLGLPGSLSPERDQEFTLISSVEPDEKTLLQLLPSTDGYSVSLQKNI 119

Query: 120 VSGNKRGFSDTMDRFSEVKSSVYTEKNWMF-SVGPDSESPQSVGQGKFPGNSGMNPML-- 176
           VSG+KR FSDTM+ +SEVK  +YTE+NWMF +   D ESP  V QGKF  NSG+N ML  
Sbjct: 120 VSGSKRVFSDTMEGYSEVKGPLYTERNWMFHAASSDPESPYPVSQGKFHANSGINAMLSS 179

Query: 177 RPTGAQQAIMKEMAPNALERSRPAANGTHN-KASASNNNMSAPAAKAQVVGWPPIRSFRK 235
           R +G    I KE+    L+       G+ N    ASN++ +APAAKAQVVGWPPI+SFRK
Sbjct: 180 RASGPHPNITKELPSKGLQEWPCETKGSDNGNKGASNDHNNAPAAKAQVVGWPPIKSFRK 239

Query: 236 NSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFT 295
           NS  T SKNNDEVDGKPG  ALF+KVSM+GAPYLRKVDLRTY+ Y ELSSALEKMFSCFT
Sbjct: 240 NSFVTNSKNNDEVDGKPGSSALFVKVSMEGAPYLRKVDLRTYSTYQELSSALEKMFSCFT 299

Query: 296 IGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKI 355
           +GQCGSH A GR+ LSESKL+D LHGSEYVLTYED+DGDWMLVG++PWEMFIDSCKRLKI
Sbjct: 300 LGQCGSHGASGRDKLSESKLRDHLHGSEYVLTYEDRDGDWMLVGEIPWEMFIDSCKRLKI 359

Query: 356 MKGSDAIGLAPRAMEKSKIR 375
           +KGSDAIGLAPRA E++K R
Sbjct: 360 VKGSDAIGLAPRATERTKNR 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523129|gb|AFK49626.1| unknown [Medicago truncatula]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/379 (68%), Positives = 284/379 (74%), Gaps = 34/379 (8%)

Query: 1   MSPPLLLGVEEEGQSNVSLMAS-SPS--DCISQNVSGLQERNYLGLSDCSSVDSSAASSL 57
           MSPPLLL  EEEGQSN S +AS SP   D  SQ  +GL+ERNYLGLSDCSSVDSS   SL
Sbjct: 1   MSPPLLLP-EEEGQSNPSTVASASPQSLDRFSQTAAGLKERNYLGLSDCSSVDSSTVPSL 59

Query: 58  PVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQK 117
             + K  LNLKATELRLGLPGS+SPER+ DL  L+S KLDEKPLFPLLP+KDGIC  SQK
Sbjct: 60  SDEKKENLNLKATELRLGLPGSQSPERDLDLFPLNSTKLDEKPLFPLLPTKDGICSLSQK 119

Query: 118 NVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLR 177
            VVSGNKRGF+DT++ F E K +  T  N + S                          R
Sbjct: 120 TVVSGNKRGFADTLEVFPEAKYTANTRVNILLSP-------------------------R 154

Query: 178 PTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNS 237
           P+GAQ   +KEM    ++ S   ANGT    S      SAPAAKAQVVGWPPIRSFRKNS
Sbjct: 155 PSGAQPTTIKEMPKKVVQESPCTANGTGAPISG-----SAPAAKAQVVGWPPIRSFRKNS 209

Query: 238 LATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIG 297
           LATTSKNNDEVDGKPG  ALF+KVSMDGAPYLRKVDLR YT Y ELSS LEKMFSCFT+G
Sbjct: 210 LATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLG 269

Query: 298 QCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMK 357
           QCGSH  PG+EMLSESKLKD LHGSEYV+TYEDKDGDWMLVGDVPW+MFID+CKRLKIMK
Sbjct: 270 QCGSHGGPGKEMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMK 329

Query: 358 GSDAIGLAPRAMEKSKIRN 376
           G DAIGLAPRAMEKSK R+
Sbjct: 330 GFDAIGLAPRAMEKSKSRS 348

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526729|ref|XP_003531969.1| PREDICTED: auxin-responsive protein IAA9-like [Glycine max]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/380 (68%), Positives = 294/380 (77%), Gaps = 36/380 (9%)

Query: 1   MSPPLLLGVEEEGQSNVSLMAS--SPS-DCISQNVSGLQERNYLGLSDCSSVDSSAASSL 57
           MSPPLL+  E+EGQSN S++AS  SPS +C + N + L+ERNYLGLSDCSSVDSS   SL
Sbjct: 1   MSPPLLVTEEDEGQSNASMVASASSPSSECFTLNEARLKERNYLGLSDCSSVDSSIVPSL 60

Query: 58  PVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQK 117
             + K  LNLKATELRLGLPGS+SPER+PDL  LSS KLDEKPLF LLP+KDGIC  SQK
Sbjct: 61  SDEKKENLNLKATELRLGLPGSQSPERDPDLFSLSSTKLDEKPLFSLLPTKDGICSLSQK 120

Query: 118 NVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPML- 176
            VVSGNKRGF+DT+D                                +FPGN+G+N ML 
Sbjct: 121 TVVSGNKRGFADTIDP-------------------------------EFPGNAGINMMLS 149

Query: 177 -RPTGAQQAIMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRK 235
            +P+G +   +KE+    L+    AANGT +  + ++ + SAPAAKAQVVGWPPIRSFRK
Sbjct: 150 PKPSGVKPTTVKEIPSKVLQEHPSAANGTGHNHTGASISSSAPAAKAQVVGWPPIRSFRK 209

Query: 236 NSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFT 295
           NSLATTSKNNDEVDGKPG  A+F+KVSMDGAPYLRKVDL  YT Y ELSSALEKMFSCFT
Sbjct: 210 NSLATTSKNNDEVDGKPGAAAIFVKVSMDGAPYLRKVDLTNYTTYRELSSALEKMFSCFT 269

Query: 296 IGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKI 355
           +GQCGSH APGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPW+MFID+CKRLKI
Sbjct: 270 LGQCGSHGAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKI 329

Query: 356 MKGSDAIGLAPRAMEKSKIR 375
           MKGSDAIGLAPRAMEKS+ R
Sbjct: 330 MKGSDAIGLAPRAMEKSRSR 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	376
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.409	0.504	0.693	8.5e-70
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.75	0.834	0.51	7.2e-68
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.409	0.578	0.660	1.6e-57
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.401	0.662	0.634	2.7e-56
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.372	0.544	0.660	1.6e-55
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.404	0.644	0.597	3.8e-55
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.369	0.528	0.653	5.4e-55
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.398	0.533	0.589	2.9e-54
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.390	0.641	0.620	2e-51
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.388	0.600	0.616	2.3e-50

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
 Identities = 113/163 (69%), Positives = 132/163 (80%)

Query:   223 QVVGWPPIRSFRKNSLATTSK----NN---DEVDGKPGPG--ALFIKVSMDGAPYLRKVD 273
             QVVGWPPIRSFRKNS+A++      NN   +E + K GP    L++KVSM+GAPYLRK+D
Sbjct:   143 QVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKID 202

Query:   274 LRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDG 333
             L+TY +Y ELSSALEKMFSCFTIGQ GSH   GR+ L+ES+L DLL GSEYV+TYEDKD 
Sbjct:   203 LKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDS 262

Query:   334 DWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
             DWMLVGDVPWEMFI SCK+L+IMK S+AIGLAPR MEK + RN
Sbjct:   263 DWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 153/300 (51%), Positives = 193/300 (64%)

Query:    81 SPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNK---RGFSDTMDRFSEV 137
             SP  E D + +S  K  E  L   LP        ++ N++S  K   + F   +    E+
Sbjct:    51 SPLAEDDKATISL-KATELTLG--LPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEI 107

Query:   138 KSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERS 197
              SS   + N   +    S++     + K    +  N M     A Q++ K+  P  + + 
Sbjct:   108 CSSSQ-KNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKG 166

Query:   198 RPAANGTHXXXXXXXXXXXXXXXXXQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGAL 257
             + +                      Q+VGWPP+RS+RKN+LATT KN+DEVDG+PG GAL
Sbjct:   167 QSSTTNN---------SSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGAL 217

Query:   258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKD 317
             F+KVSMDGAPYLRKVDLR+YTNYGELSSALEKMF+ FT+GQCGS+ A G++MLSE+KLKD
Sbjct:   218 FVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKD 277

Query:   318 LLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLA--PRAMEKSKIR 375
             LL+G +YVLTYEDKDGDWMLVGDVPWEMFID CK+LKIMKG DAIGLA  PRAMEKSK+R
Sbjct:   278 LLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 541 (195.5 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 105/159 (66%), Positives = 125/159 (78%)

Query:   223 QVVGWPPIRSFRKNSLATTS---KNNDEVDGKPGP--GALFIKVSMDGAPYLRKVDLRTY 277
             QVVGWPPIRS+RKN++A +    K  D+ + K  P  G L++KVSMDGAPYLRKVDL+ Y
Sbjct:   108 QVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMY 167

Query:   278 TNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML 337
              NY ELS ALEKMFSCFT+G   S+   GR+ LS+ +L DL +G+E VLTYEDKD DWML
Sbjct:   168 KNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWML 227

Query:   338 VGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
             VGDVPW MF DSC+RL+IMKGSDA+GLAPRA +KSK RN
Sbjct:   228 VGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 2.7e-56, Sum P(3) = 2.7e-56
 Identities = 99/156 (63%), Positives = 120/156 (76%)

Query:   223 QVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGAL-FIKVSMDGAPYLRKVDLRTYTNYG 281
             QVVGWPP+R++RKN +A       E     G G + F+KVSMDGAPYLRKVDL+ YT+Y 
Sbjct:    76 QVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYK 135

Query:   282 ELSSALEKMFSCFTIGQCGSHEAPGR-EMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD 340
             +LS AL KMFS FT+G  G   A G  + ++ESK+ DLL+ SEYV +YEDKDGDWMLVGD
Sbjct:   136 DLSDALAKMFSSFTMGSYG---AQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGD 192

Query:   341 VPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
             VPW MF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct:   193 VPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 502 (181.8 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 103/156 (66%), Positives = 122/156 (78%)

Query:   223 QVVGWPPIRSFRKNSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNY 280
             QVVGWPPIRS+RKN++AT     + ++ + K G G L++KVSMDGAPYLRKVDL+TY NY
Sbjct:   116 QVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNY 175

Query:   281 GELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD 340
              +LS+ALEKMF  FT G+ G         LSES+ KD     EYVLTYEDKDGDWMLVGD
Sbjct:   176 KDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGD 221

Query:   341 VPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
             VPWEMF +SC+RL+IMKGSDAIGLAPRA++KSK RN
Sbjct:   222 VPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
 Identities = 101/169 (59%), Positives = 126/169 (74%)

Query:   223 QVVGWPPIRSFRKNSLA----TT---SKNNDEVDGKPGPGA--------LFIKVSMDGAP 267
             QVVGWPP+RSFRKN ++    TT   ++ ND+  G  G  +         ++KVSMDGAP
Sbjct:    70 QVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAP 129

Query:   268 YLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLT 327
             YLRK+DL+ Y  Y +LS+AL KMFS FTIG  G      ++ ++ESKL DLL+GS+YV T
Sbjct:   130 YLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPT 187

Query:   328 YEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
             YEDKDGDWMLVGDVPWEMF+DSCKR++IMKGS+AIGLAPRA+EK K R+
Sbjct:   188 YEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 492 (178.3 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 102/156 (65%), Positives = 119/156 (76%)

Query:   223 QVVGWPPIRSFRKNSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNY 280
             QVVGWPPIRS+RKN++AT     N ++VD K G G L++KVSMDGAPYLRKVDL+TY NY
Sbjct:   123 QVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNY 182

Query:   281 GELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD 340
              ++S  LEKMF  F+ G+ G+          E++ KD     EYVLTYEDKDGDWMLVGD
Sbjct:   183 KDMSLGLEKMFIGFSTGKEGA----------ENQ-KD----GEYVLTYEDKDGDWMLVGD 227

Query:   341 VPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 376
             VPWEMF DSC+RL+IMKGSDAIGLAPRA EKSK RN
Sbjct:   228 VPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 494 (179.0 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 89/151 (58%), Positives = 117/151 (77%)

Query:   223 QVVGWPPIRSFRKNSLATTS-KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYG 281
             QVVGWPP+RS+RKN+LA ++ K   E  GK   G  ++KVSMDGAPYLRKVDL+TY++Y 
Sbjct:   127 QVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYE 186

Query:   282 ELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDV 341
             +LS ALEKMFSCF  G+  SH+   R+ L++    D L   EYVLTYEDKD DWMLVGD+
Sbjct:   187 DLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDL 246

Query:   342 PWEMFIDSCKRLKIMKGSDAIGLAPRAMEKS 372
             PW++F  SC++L+IM+GSDA G+APR++E++
Sbjct:   247 PWDLFTTSCRKLRIMRGSDAAGMAPRSLEQT 277

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 95/153 (62%), Positives = 118/153 (77%)

Query:   223 QVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGE 282
             QVVGWPP+RS+RKN + +  K++    G P   A F+KVSMDGAPYLRK+DLR Y +Y E
Sbjct:    82 QVVGWPPVRSYRKNVMVSCQKSS----GGP-EAAAFVKVSMDGAPYLRKIDLRMYKSYDE 136

Query:   283 LSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVP 342
             LS+AL  MFS FT+G+ G  E    + ++E KL DL++  +YV +YEDKDGDWMLVGDVP
Sbjct:   137 LSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVP 195

Query:   343 WEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIR 375
             W MF+D+CKRL++MKGSDAIGLAPRAMEK K R
Sbjct:   196 WPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 98/159 (61%), Positives = 119/159 (74%)

Query:   223 QVVGWPPIRSFRKNSLAT--TSKNNDEVDG-KPG------PGALFIKVSMDGAPYLRKVD 273
             QVVGWPP+R++RKN +    TS   +E    K G       GA  +KVSMDGAPYLRKVD
Sbjct:    82 QVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVD 141

Query:   274 LRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGR-EMLSESKLKDLLHGSEYVLTYEDKD 332
             L+ Y +Y +LS AL KMFS FT+G  G   A G  + ++ESKL +LL+ SEYV +YEDKD
Sbjct:   142 LKMYKSYQDLSDALAKMFSSFTMGNYG---AQGMIDFMNESKLMNLLNSSEYVPSYEDKD 198

Query:   333 GDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEK 371
             GDWMLVGDVPWEMF++SCKRL+IMKGS+A+GLAPRAMEK
Sbjct:   199 GDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38827	IAA9_ARATH	No assigned EC number	0.6621	0.8776	0.9763	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	376
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-85

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  256 bits (656), Expect = 2e-85
 Identities = 129/304 (42%), Positives = 147/304 (48%), Gaps = 116/304 (38%)

Query: 65  LNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNK 124
           LNLKATELRLGLPG   PE E                                + V+ NK
Sbjct: 1   LNLKATELRLGLPGGSEPESE-----------------------------PSTSSVTSNK 31

Query: 125 RGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGNSGMNPMLRPTGAQQA 184
           RG       FSEV                        G     G                
Sbjct: 32  RG-------FSEV---------------------TEDGISSSLGEDKST----------- 52

Query: 185 IMKEMAPNALERSRPAANGTHNKASASNNNMSAPAAKAQVVGWPPIRSFRKNSLATTSKN 244
                                  + +SN + + P AKAQVVGWPP+RS+RKNSL      
Sbjct: 53  ----------------------ISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSLREKKS- 89

Query: 245 NDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEA 304
                        ++KVSMDGAPYLRKVDL+ Y +Y ELSSALEKMFSCFTIG       
Sbjct: 90  -----------GSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG------- 131

Query: 305 PGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL 364
                  ES L DLL+GSEYV TYEDKDGDWMLVGDVPWEMF++SCKRL+IMKGS+AIGL
Sbjct: 132 -------ESGLLDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGL 184

Query: 365 APRA 368
           APR+
Sbjct: 185 APRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	376
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.39
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.1
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.81
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.75
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.68
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.19
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	95.75
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.07
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.85
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.84
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	94.78
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	93.59
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	90.21

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=3.1e-68  Score=489.01  Aligned_cols=139  Identities=70%  Similarity=1.156  Sum_probs=6.0

Q ss_pred             CCCCcccCCccCCCCcccccccccccccCCCCCCCCCCCCCccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccc
Q 017170          215 MSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCF  294 (376)
Q Consensus       215 ~~~pa~kaqVVGWPPVrS~RKN~l~~~~k~~~e~~~~~~~~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~  294 (376)
                      ...|++++|+||||||++||||.+..         .+....++||||+|||+||||||||++|+||++|+.+|++||.+|
T Consensus        77 ~~~p~~~~~~vgwpp~~s~r~n~~~~---------~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~  147 (215)
T PF02309_consen   77 SSPPASKAQVVGWPPVRSFRKNSLSE---------KQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCF  147 (215)
T ss_dssp             ---------BTTBS----S-------------------------------------------------------------
T ss_pred             CCCCcccccccCCCcccccccccccc---------cccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCC
Confidence            45577889999999999999998771         112234799999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccCCChhHHHhhceeeEEecCCcccCcchhH
Q 017170          295 TIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRA  368 (376)
Q Consensus       295 ~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGDVPWemFv~svKRLrImk~Sea~glapr~  368 (376)
                      .|.+|++++      +++..+.+++++++|+|||||+||||||||||||+|||.+|||||||+.+|++||+||+
T Consensus       148 ~i~~~~~~~------~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  148 SIEQCGSHG------LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             Ccccccccc------ccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            999998744      34566677788899999999999999999999999999999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.39  E-value=0.00032  Score=54.77  Aligned_cols=68  Identities=24%  Similarity=0.458  Sum_probs=54.9

Q ss_pred             ceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEE
Q 017170          258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML  337 (376)
Q Consensus       258 fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML  337 (376)
                      -|||+..|. +=|.+.+..--+|++|...+++.|...                          ...+.|.|.|.||||..
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~Y~D~dgD~V~   55 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------------------------DEDFQLKYKDEDGDLVT   55 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------------------------TSSEEEEEEETTSSEEE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------------------------CccEEEEeeCCCCCEEE
Confidence            489999997 333588888889999999999999751                          24799999999999998


Q ss_pred             ccC-CChhHHHhhcee
Q 017170          338 VGD-VPWEMFIDSCKR  352 (376)
Q Consensus       338 VGD-VPWemFv~svKR  352 (376)
                      +-+ .=|++.+..+++
T Consensus        56 i~sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   56 ISSDEDLQEAIEQAKE   71 (84)
T ss_dssp             ESSHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHh
Confidence            875 568888887753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.10  E-value=0.0023  Score=50.04  Aligned_cols=66  Identities=23%  Similarity=0.420  Sum_probs=52.2

Q ss_pred             ceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEE
Q 017170          258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML  337 (376)
Q Consensus       258 fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML  337 (376)
                      =|||+-.|.  -|.+-+..--+|++|...+.+.|..                          ....+.|.|+|.||||..
T Consensus         3 ~vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~--------------------------~~~~~~l~Y~Dedgd~v~   54 (81)
T smart00666        3 DVKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL--------------------------DNQSFTLKYQDEDGDLVS   54 (81)
T ss_pred             cEEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC--------------------------CCCCeEEEEECCCCCEEE
Confidence            378887554  6777788889999999999999974                          113689999999999987


Q ss_pred             ccC-CChhHHHhhce
Q 017170          338 VGD-VPWEMFIDSCK  351 (376)
Q Consensus       338 VGD-VPWemFv~svK  351 (376)
                      +.+ .=|.+.+..++
T Consensus        55 l~sd~Dl~~a~~~~~   69 (81)
T smart00666       55 LTSDEDLEEAIEEYD   69 (81)
T ss_pred             ecCHHHHHHHHHHHH
Confidence            665 57777777666

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.81  E-value=0.0036  Score=52.13  Aligned_cols=68  Identities=25%  Similarity=0.311  Sum_probs=52.6

Q ss_pred             ceEEeecCCccCceecCC---CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCC
Q 017170          258 FIKVSMDGAPYLRKVDLR---TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGD  334 (376)
Q Consensus       258 fVKV~MDG~pIGRKVDL~---~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD  334 (376)
                      -|||.-+|.-+=-++++.   ..-+|++|...+.+.|...                         ...+|+|.|.|.|||
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-------------------------~~~~~~l~Y~Dedgd   56 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-------------------------PDADLSLTYTDEDGD   56 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-------------------------CCCcEEEEEECCCCC
Confidence            489999998555555554   4679999999999999751                         125799999999999


Q ss_pred             eEEccCCChhHHHhhcee
Q 017170          335 WMLVGDVPWEMFIDSCKR  352 (376)
Q Consensus       335 wMLVGDVPWemFv~svKR  352 (376)
                      |..+-+.  +.|...+.+
T Consensus        57 ~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          57 VVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEEEccH--HHHHHHHHH
Confidence            9988776  666655554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.75  E-value=0.0069  Score=46.99  Aligned_cols=66  Identities=23%  Similarity=0.411  Sum_probs=51.6

Q ss_pred             ceEEeecCCccCceecCC-CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170          258 FIKVSMDGAPYLRKVDLR-TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM  336 (376)
Q Consensus       258 fVKV~MDG~pIGRKVDL~-~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  336 (376)
                      -|||+-.|.  -|.+=+. ..-+|++|...|.+.|...                          ...+.+.|.|.||||.
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~--------------------------~~~~~l~y~D~e~d~v   53 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD--------------------------AVSFKLKYPDEDGDLV   53 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC--------------------------CCcEEEEeeCCCCCEE
Confidence            378888875  4445455 8889999999999999741                          0368999999999999


Q ss_pred             EccC-CChhHHHhhce
Q 017170          337 LVGD-VPWEMFIDSCK  351 (376)
Q Consensus       337 LVGD-VPWemFv~svK  351 (376)
                      .+.+ .=|++.++.++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          54 TISSDEDLEEAIEEAR   69 (81)
T ss_pred             EeCCHHHHHHHHHHHh
Confidence            8887 57777777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.68  E-value=0.0053  Score=50.15  Aligned_cols=56  Identities=23%  Similarity=0.339  Sum_probs=44.4

Q ss_pred             ceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEE
Q 017170          258 FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWML  337 (376)
Q Consensus       258 fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwML  337 (376)
                      =|||...|.  -+.+-|..--+|++|...+.++|..-                         +.+.|.|-|.|.||||.+
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------------------------~~~~f~LkY~Ddegd~v~   54 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------------------------DMSAFDLKYLDDDEEWVL   54 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------------------------CCCeeEEEEECCCCCeEE
Confidence            389999887  45566666669999999999999740                         125799999999999987


Q ss_pred             ccC
Q 017170          338 VGD  340 (376)
Q Consensus       338 VGD  340 (376)
                      +--
T Consensus        55 lts   57 (82)
T cd06407          55 LTC   57 (82)
T ss_pred             eec
Confidence            643

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.19  E-value=0.013  Score=48.28  Aligned_cols=53  Identities=17%  Similarity=0.292  Sum_probs=45.5

Q ss_pred             eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170          259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV  338 (376)
Q Consensus       259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  338 (376)
                      |||.-.|.-+--+++-+..-+|++|...+.++|..                          +  .+.|.|-|.||||.++
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l--------------------------~--~f~lKYlDde~e~v~l   54 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL--------------------------N--DIQIKYVDEENEEVSV   54 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC--------------------------C--cceeEEEcCCCCEEEE
Confidence            78999998777777777788999999999999974                          1  4789999999999876


Q ss_pred             c
Q 017170          339 G  339 (376)
Q Consensus       339 G  339 (376)
                      -
T Consensus        55 s   55 (81)
T cd06396          55 N   55 (81)
T ss_pred             E
Confidence            4

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=95.75  E-value=0.049  Score=45.16  Aligned_cols=74  Identities=18%  Similarity=0.409  Sum_probs=50.5

Q ss_pred             ceEEeecCCccCceecCCCCC-ChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170          258 FIKVSMDGAPYLRKVDLRTYT-NYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM  336 (376)
Q Consensus       258 fVKV~MDG~pIGRKVDL~~y~-sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  336 (376)
                      -+|+.-.|.  -|++=+..-. +|.+|...+.+.|....                       .....+.+.|.|.|||+.
T Consensus         2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~~-----------------------~~~~~flIKYkD~dGDlV   56 (81)
T cd06401           2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGKL-----------------------GSSDDVLIKYKDEDGDLI   56 (81)
T ss_pred             eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcccc-----------------------CCcccEEEEEECCCCCEE
Confidence            367777666  4665555433 99999999999997410                       112479999999999999


Q ss_pred             EccCC---ChhHHHhhceeeEEe
Q 017170          337 LVGDV---PWEMFIDSCKRLKIM  356 (376)
Q Consensus       337 LVGDV---PWemFv~svKRLrIm  356 (376)
                      =+.+-   -|..=+...+||+|.
T Consensus        57 TIts~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          57 TIFDSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             EeccHHHHHHHHhcCcceEEEEe
Confidence            99875   343334444555553

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.07  E-value=0.056  Score=45.00  Aligned_cols=56  Identities=18%  Similarity=0.344  Sum_probs=44.6

Q ss_pred             eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170          259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV  338 (376)
Q Consensus       259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  338 (376)
                      ||++-.|.-.--.+|.  .-+|++|.+.+.+||..                         ..+..|++.|.|.|||---+
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-------------------------~~~q~ft~kw~DEEGDp~ti   55 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-------------------------HNDQPFTLKWIDEEGDPCTI   55 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-------------------------CCCCcEEEEEECCCCCceee
Confidence            7999999855555665  77899999999999974                         12357999999999998766


Q ss_pred             cCC
Q 017170          339 GDV  341 (376)
Q Consensus       339 GDV  341 (376)
                      ...
T Consensus        56 SS~   58 (83)
T cd06404          56 SSQ   58 (83)
T ss_pred             cCH
Confidence            543

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.85  E-value=0.055  Score=45.07  Aligned_cols=52  Identities=23%  Similarity=0.352  Sum_probs=38.4

Q ss_pred             CccCceecCC--CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccC
Q 017170          266 APYLRKVDLR--TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGD  340 (376)
Q Consensus       266 ~pIGRKVDL~--~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGD  340 (376)
                      .|-||.+=++  ...+|.+|..++.+-|+.-.                      . ....|.|.|.|.||||.|.--
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~----------------------~-~~~~~~L~YlDDEgD~VllT~   60 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD----------------------F-ETHLYALSYVDDEGDIVLITS   60 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc----------------------c-cCCcccEEEEcCCCCEEEEec
Confidence            4567765544  37899999999999997510                      0 024699999999999988653

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.84  E-value=0.097  Score=43.71  Aligned_cols=60  Identities=25%  Similarity=0.449  Sum_probs=43.9

Q ss_pred             cceEEeecC---CccCcee--cCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcC
Q 017170          257 LFIKVSMDG---APYLRKV--DLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDK  331 (376)
Q Consensus       257 ~fVKV~MDG---~pIGRKV--DL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDk  331 (376)
                      +.||.+..|   .+=-|++  |=....+|++|...+.++|..                         +.+..|+|.|.|.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-------------------------l~~~~ftlky~De   55 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-------------------------LRGKNFQLFWKDE   55 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-------------------------cCCCcEEEEEECC
Confidence            357777776   2233444  446667999999999999963                         1235799999999


Q ss_pred             CCCeEEccCC
Q 017170          332 DGDWMLVGDV  341 (376)
Q Consensus       332 EGDwMLVGDV  341 (376)
                      |||..-+...
T Consensus        56 eGDlvtIssd   65 (87)
T cd06402          56 EGDLVAFSSD   65 (87)
T ss_pred             CCCEEeecCH
Confidence            9999776653

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.78  E-value=0.069  Score=44.24  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=48.8

Q ss_pred             eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170          259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV  338 (376)
Q Consensus       259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  338 (376)
                      ||..-|..=-=-.+|.....+|++++.-|++||...                          ...|+|-|.|.+||.+-+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~--------------------------~~~f~i~Y~D~~gDLLPI   56 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIP--------------------------NVDFLIGYTDPHGDLLPI   56 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCC--------------------------CCcEEEEEeCCCCCEecc
Confidence            666666662222455555699999999999999751                          247999999999999977


Q ss_pred             c-CCChhHHHhhcee
Q 017170          339 G-DVPWEMFIDSCKR  352 (376)
Q Consensus       339 G-DVPWemFv~svKR  352 (376)
                      - |+-+..=++++++
T Consensus        57 nNDdNf~kAlssa~p   71 (80)
T cd06403          57 NNDDNFLKALSSANP   71 (80)
T ss_pred             cCcHHHHHHHHcCCC
Confidence            5 4455555667763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=93.59  E-value=0.18  Score=41.94  Aligned_cols=66  Identities=23%  Similarity=0.320  Sum_probs=50.4

Q ss_pred             eEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEc
Q 017170          259 IKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLV  338 (376)
Q Consensus       259 VKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLV  338 (376)
                      -||+-+|.  .|++-...-=+|..|.+.|+.+|....                          ..+.|||.|.|||..=+
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~--------------------------~~~~vtYiDeD~D~ITl   54 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE--------------------------IKVGVTYIDNDNDEITL   54 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh--------------------------hHeEEEEEcCCCCEEEe
Confidence            48888887  899988888999999999999998621                          13789999999998755


Q ss_pred             cC-CChhHHHhhcee
Q 017170          339 GD-VPWEMFIDSCKR  352 (376)
Q Consensus       339 GD-VPWemFv~svKR  352 (376)
                      -| .=.+.|..-..|
T Consensus        55 ssd~eL~d~~~~~~~   69 (82)
T cd06397          55 SSNKELQDFYRLSHR   69 (82)
T ss_pred             cchHHHHHHHHhccc
Confidence            44 555555553333

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=90.21  E-value=0.85  Score=38.19  Aligned_cols=65  Identities=20%  Similarity=0.402  Sum_probs=50.4

Q ss_pred             cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170          257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM  336 (376)
Q Consensus       257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  336 (376)
                      .-|||+-.|.  .|-|-+..--+|++|...+.++|..                           ...++|-|.|. ||..
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~~~~~iKykDE-GD~i   52 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------KRRLKIKMKDD-GDMI   52 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCceEEEEEcC-CCCc
Confidence            4589999898  6677777777899999999999974                           13689999999 9998


Q ss_pred             EccCC-ChhHHHhhce
Q 017170          337 LVGDV-PWEMFIDSCK  351 (376)
Q Consensus       337 LVGDV-PWemFv~svK  351 (376)
                      -++|- =.++-+.++|
T Consensus        53 ti~sq~DLd~Ai~~a~   68 (86)
T cd06408          53 TMGDQDDLDMAIDTAR   68 (86)
T ss_pred             cccCHHHHHHHHHHHH
Confidence            88874 3344455554

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	376
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 53/412 (12%), Positives = 116/412 (28%), Gaps = 118/412 (28%)

Query: 5   LLLGVEEEGQSNVSLMASSPSDC--ISQNVSGL-QERNY----LGLSD------------ 45
           LL  ++    S     ++       I   +  L + + Y    L L +            
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 46  -C----SSVDSSAASSLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKP 100
            C    ++        L       ++L      + L   E        SLL    LD +P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEV------KSLLLK-YLDCRP 315

Query: 101 LFPLLPSKDGICPGS--QKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESP 158
               LP +  +   +  + ++++ + R    T D +  V     T    +     +   P
Sbjct: 316 --QDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT---IIESSLNVLEP 368

Query: 159 QSVGQ-----GKFPGNSGMNPML-------RPTGAQQAIMKEMAPNAL--ERSRPAANGT 204
               +       FP ++ +  +L               ++ ++   +L  ++ + +    
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 205 HN---KASASNNNMSAPAAKAQVVG-WPPIRSFRKNSLATTSKNN--------------- 245
            +   +      N    A    +V  +   ++F  + L     +                
Sbjct: 429 PSIYLELKVKLENE--YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 246 -DEVDGKPGPGALFI-------KVSMDGAPYLRK-------VDLRTYTNY--------GE 282
            + +        +F+       K+  D   +            L+ Y  Y          
Sbjct: 487 PERMTLFR---MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 283 LSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGS---EYVLTYEDK 331
           L +A+   F    + +   +       L  SK  DLL  +   E    +E+ 
Sbjct: 544 LVNAILD-F----LPKIEEN-------LICSKYTDLLRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 49/281 (17%), Positives = 84/281 (29%), Gaps = 74/281 (26%)

Query: 117 KNVVSGNKRGF------SDTMDRFSEVKSS-----VYTEKN---------WMFSVGPDSE 156
           K+++S  +  F       D  D    + S      +   K+         W         
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL-----S 73

Query: 157 SPQSVGQGKFPGNSGMNPMLRPTGAQQAIMKEMAPNALERSRPAA--NGTHNKASASNNN 214
             + + Q KF     +  +LR     + +M  +     + S          ++      N
Sbjct: 74  KQEEMVQ-KF-----VEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRL----YN 121

Query: 215 MSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPG--ALFIKVSMDGAPYLRKV 272
            +   AK  V    P    R+  L      N  +DG  G G   + + V +       K+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKM 180

Query: 273 DLRTY-TNYGELSSA---LEKMFS-CFTIG----QCGSHEAPGREMLSESK--LKDLLHG 321
           D + +  N    +S    LE +    + I         H +  +  +   +  L+ LL  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 322 SEY-----VLTYEDKDGDWMLVGDV----PWEMFIDSCKRL 353
             Y     VL             +V     W  F  SCK L
Sbjct: 241 KPYENCLLVL-------L-----NVQNAKAWNAFNLSCKIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	376
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.89
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.59
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.63
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	93.65
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.68
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	80.71

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.89  E-value=0.015  Score=47.39  Aligned_cols=59  Identities=15%  Similarity=0.238  Sum_probs=45.2

Q ss_pred             CccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCC
Q 017170          255 GALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGD  334 (376)
Q Consensus       255 ~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGD  334 (376)
                      +.+=|||+-.|.-+  .+.+...-+|++|...|.++|..                         ..+..++|.|.|.|||
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~-------------------------~~~~~f~lky~DEeGD   57 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF-------------------------DNEQLFTMKWIDEEGD   57 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC-------------------------CSSCCEEEEECCSSSC
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC-------------------------CCCCeEEEEEECCCCC
Confidence            45789999999844  44444467999999999999974                         1235799999999999


Q ss_pred             eEEccC
Q 017170          335 WMLVGD  340 (376)
Q Consensus       335 wMLVGD  340 (376)
                      +.-+-.
T Consensus        58 ~itisS   63 (89)
T 1vd2_A           58 PCTVSS   63 (89)
T ss_dssp             CEECCS
T ss_pred             cccccC
Confidence            865543

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.59  E-value=0.019  Score=46.78  Aligned_cols=72  Identities=17%  Similarity=0.201  Sum_probs=52.8

Q ss_pred             CCccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCC
Q 017170          254 PGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDG  333 (376)
Q Consensus       254 ~~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG  333 (376)
                      .+.+-||..-|..--=-.+|-....+|++|...|+++|..                          ....|++.|.|.||
T Consensus         4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L--------------------------~~~~f~i~Y~D~dG   57 (86)
T 1wmh_B            4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHG   57 (86)
T ss_dssp             -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTS
T ss_pred             CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC--------------------------CCCCEEEEEECCCC
Confidence            3567788888888333345555678999999999999974                          12469999999999


Q ss_pred             CeEEccCC-ChhHHHhhce
Q 017170          334 DWMLVGDV-PWEMFIDSCK  351 (376)
Q Consensus       334 DwMLVGDV-PWemFv~svK  351 (376)
                      |++-.-+. =..+=+.++|
T Consensus        58 DLlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           58 DLLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             CEEECCSHHHHHHHTTSSS
T ss_pred             CEeeecCHHHHHHHHHhCC
Confidence            99987765 3344455666

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.63  E-value=0.042  Score=45.76  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=44.2

Q ss_pred             ccceEEeecCC----ccCceecCCC-----------CCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccC
Q 017170          256 ALFIKVSMDGA----PYLRKVDLRT-----------YTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLH  320 (376)
Q Consensus       256 ~~fVKV~MDG~----pIGRKVDL~~-----------y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~  320 (376)
                      ++-||++..|.    .=-|++=|..           ..+|++|...+.++|..                         +.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-------------------------l~   59 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-------------------------LR   59 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------SC
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-------------------------cC
Confidence            56788888752    2335544431           24899999999999963                         12


Q ss_pred             CCceEEEEEcCCCCeEEccCC
Q 017170          321 GSEYVLTYEDKDGDWMLVGDV  341 (376)
Q Consensus       321 gseyvLtYEDkEGDwMLVGDV  341 (376)
                      +..|+|.|.|.|||+.-+-+.
T Consensus        60 ~~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           60 PGGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             SSCEEEEEECTTCCEEEECSH
T ss_pred             CCcEEEEEECCCCCEEEecCH
Confidence            457999999999999877664

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=93.65  E-value=0.097  Score=44.71  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CccceEEeecCC----ccCceecCC-----------CCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhccc
Q 017170          255 GALFIKVSMDGA----PYLRKVDLR-----------TYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLL  319 (376)
Q Consensus       255 ~~~fVKV~MDG~----pIGRKVDL~-----------~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll  319 (376)
                      ..+-||++..|.    .==|++=|.           .-.+|++|...+.++|..                         +
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~-------------------------L   73 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA-------------------------L   73 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT-------------------------S
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc-------------------------c
Confidence            468899999752    123544443           245999999999999963                         1


Q ss_pred             CCCceEEEEEcCCCCeEEccCC
Q 017170          320 HGSEYVLTYEDKDGDWMLVGDV  341 (376)
Q Consensus       320 ~gseyvLtYEDkEGDwMLVGDV  341 (376)
                      .+..|+|.|.|.|||+.-+-..
T Consensus        74 ~~~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           74 RPGGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             CSSCEEEEEECTTCCEEEECSH
T ss_pred             CCCcEEEEEECCCCCEEEecCH
Confidence            2357999999999998877654

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.68  E-value=0.83  Score=37.90  Aligned_cols=76  Identities=17%  Similarity=0.399  Sum_probs=54.2

Q ss_pred             CccceEEeecCCc----c--CceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEE
Q 017170          255 GALFIKVSMDGAP----Y--LRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTY  328 (376)
Q Consensus       255 ~~~fVKV~MDG~p----I--GRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtY  328 (376)
                      +++-|||+-+...    +  .|.|=+..--+|++|...+.+-|..+..     .              +.  .....|-|
T Consensus         4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-----~--------------~i--~~~~klkY   62 (98)
T 1q1o_A            4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-----N--------------NI--SPITKIKY   62 (98)
T ss_dssp             SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-----S--------------CC--CCCCCEEE
T ss_pred             ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-----c--------------cc--cceeEEEE
Confidence            3467888877431    2  2666677788899999999999975210     0              00  12367999


Q ss_pred             EcCCCCeEEccC-CChhHHHhhce
Q 017170          329 EDKDGDWMLVGD-VPWEMFIDSCK  351 (376)
Q Consensus       329 EDkEGDwMLVGD-VPWemFv~svK  351 (376)
                      +|.|||+...++ .=|+|-++++|
T Consensus        63 kDEdGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           63 QDEDGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEcCHHHHHHHHHHHH
Confidence            999999987776 58999888763

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=80.71  E-value=3.3  Score=33.80  Aligned_cols=56  Identities=11%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170          257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM  336 (376)
Q Consensus       257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  336 (376)
                      .-+||.--|...=--|.-..--++++|-..+..+|+.                            +.++|.|-|.|||-.
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L----------------------------~~~~ikY~DEenD~v   58 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV   58 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC----------------------------CceEEEEEcCCCCEE
Confidence            4578888888443346444577899999999999963                            358999999999987


Q ss_pred             EccC
Q 017170          337 LVGD  340 (376)
Q Consensus       337 LVGD  340 (376)
                      -|=-
T Consensus        59 ~i~S   62 (87)
T 2bkf_A           59 SINS   62 (87)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            6543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	376
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.69
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.77
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	80.48

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0013  Score=51.56  Aligned_cols=66  Identities=11%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             cceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeE
Q 017170          257 LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWM  336 (376)
Q Consensus       257 ~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwM  336 (376)
                      .=|||+..|..|=-+|-+....+|.+|...|.+.|..                            ..+.|.|.|.|+||.
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l----------------------------~~~~lkY~Ddd~e~v   56 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL----------------------------NTIQIKYLDEENEEV   56 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC----------------------------SSEEEEEECTTSCEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc----------------------------ccceEEEEcCCCCEE
Confidence            4589999888665577777889999999999999974                            137899999999998


Q ss_pred             Ecc-CCChhHHHhhc
Q 017170          337 LVG-DVPWEMFIDSC  350 (376)
Q Consensus       337 LVG-DVPWemFv~sv  350 (376)
                      ++. |.=.++.+..+
T Consensus        57 ~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1          57 SINSQGEYEEALKMA   71 (85)
T ss_dssp             EECSHHHHHHHHHHH
T ss_pred             EEecHHHHHHHHHHH
Confidence            775 44455555443

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0085  Score=45.85  Aligned_cols=72  Identities=17%  Similarity=0.141  Sum_probs=53.3

Q ss_pred             CCccceEEeecCCccCceecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCC
Q 017170          254 PGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDG  333 (376)
Q Consensus       254 ~~~~fVKV~MDG~pIGRKVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEG  333 (376)
                      .+..-|||+..+.  -|.+=|..--+|.+|...+.+.|..                            ..++|-|+|.||
T Consensus        10 ~~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~----------------------------~~~~lkY~Dedg   59 (85)
T d1ip9a_          10 LKTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDT----------------------------DNFKLQTKLFDG   59 (85)
T ss_dssp             CCCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTS----------------------------SCEEEEECCSSS
T ss_pred             CCCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCC----------------------------CceEEEEEcCCC
Confidence            4568899999998  4555555668899999999999963                            148899999999


Q ss_pred             CeEEccC-CChhHHHhhceeeEE
Q 017170          334 DWMLVGD-VPWEMFIDSCKRLKI  355 (376)
Q Consensus       334 DwMLVGD-VPWemFv~svKRLrI  355 (376)
                      ||..+-+ .=+++=++...||.+
T Consensus        60 d~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          60 SGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             CCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CEEEEeCHHHHHHHHHhcCcEEE
Confidence            9976554 455655555545543

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=1.5  Score=33.59  Aligned_cols=55  Identities=18%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             eecCCCCCChHHHHHHHHHhhccccccCCCCCCCCcccccchhhhhcccCCCceEEEEEcCCCCeEEccCC-ChhHHHhh
Q 017170          271 KVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDV-PWEMFIDS  349 (376)
Q Consensus       271 KVDL~~y~sY~eLs~aLe~MF~~~~~g~~gs~g~~~~e~~~e~~L~dll~gseyvLtYEDkEGDwMLVGDV-PWemFv~s  349 (376)
                      .+|.....+|++.+.-|++|-..                          .+-+++|.|.|.+||.+-.-.. -+.-=+.+
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l--------------------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~s   70 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQI--------------------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALAS   70 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTC--------------------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTS
T ss_pred             eeccccccCHHHHHHHHHHHcCC--------------------------CCCcEEEEEecCCCCcccccCchHHHHHHHh
Confidence            46777789999999999999864                          1247999999999999987644 44444556


Q ss_pred             ce
Q 017170          350 CK  351 (376)
Q Consensus       350 vK  351 (376)
                      ++
T Consensus        71 a~   72 (82)
T d1wmhb_          71 GP   72 (82)
T ss_dssp             SS
T ss_pred             cC
Confidence            66