Citrus Sinensis ID: 017238

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MLFLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
ccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccEEEEccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccccccccccccccccEEEccccccccccccEEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEccccccccEEEEEEEccccccEEEEEEccEEEEEEEccEEEEEEcccccccccEEEEEEEEcccccccccccccEEEEEEcEEEcccEEEEEEEEEEccccccccEEEEEEcccEEEcc
ccEEEcccEEEcccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHEHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEEcccccccccccccccccHcccccccccccEEcccEEEEEEHHHEEEEEcccccEEEEEEEEEEEEEEEEccccccEEcccccEEEccccEcccEEEcccccccEEEEccccccEEEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEccccccccEEEEcEEEEEEccccEEEEEEEEcccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEccEEEEEEEEEccccccccEEEEEEccccEEEEc
mlflksmpviasptHYIFQIVRAGITFLactqvempplmgIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMidngfplttepnilremiappniVSKMLSVVtgnssnvsdilpgatascvpwrptdvkyanneVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNcllsglpdltlsfanpsilhdvrfhpcvrfrpweshqilsfvppdgqfKLMSYRVKklkstpiyvkpqltsdagtcrISVMVGirndpgktiDSIILQfqlppcilsadltsnhgtvnvlsnkictwsigripkdkapslsgtmVLETGLetlrvfptFQVEFRIMGVAlsglqidkldlqnvpnrlYKGFRAvtrageyevrs
MLFLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLkstpiyvkpqltsdagtcrISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKgfravtrageyevrs
MLFLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
*****SMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRA*******
**FLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVS*******************************VKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVL********VFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MLFLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MLFLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSV********************PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
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iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLFLKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q5R478418 AP-3 complex subunit mu-1 yes no 0.978 0.877 0.461 9e-96
Q9Y2T2418 AP-3 complex subunit mu-1 yes no 0.978 0.877 0.461 9e-96
Q5ZMP7418 AP-3 complex subunit mu-1 yes no 0.978 0.877 0.447 1e-95
Q24K11418 AP-3 complex subunit mu-1 yes no 0.978 0.877 0.461 2e-95
Q9JKC8418 AP-3 complex subunit mu-1 yes no 0.978 0.877 0.458 4e-95
P53676418 AP-3 complex subunit mu-1 yes no 0.976 0.875 0.454 3e-94
P47795418 AP-1 complex subunit mu O N/A no 0.978 0.877 0.461 3e-93
P53678418 AP-3 complex subunit mu-2 no no 0.978 0.877 0.469 2e-90
Q8R2R9418 AP-3 complex subunit mu-2 no no 0.978 0.877 0.463 3e-90
P53677418 AP-3 complex subunit mu-2 no no 0.978 0.877 0.458 8e-90
>sp|Q5R478|AP3M1_PONAB AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1 Back     alignment and function desciption
 Score =  350 bits (899), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 172/373 (46%), Positives = 248/373 (66%), Gaps = 6/373 (1%)

Query: 8   PVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNF 67
           PVI++P HY+  I R  + F++  Q E+PPL  IEFL RVAD   DY GE +E  IKDN 
Sbjct: 47  PVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNV 106

Query: 68  VIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCV 127
           VIVYELL+EM+DNGFPL TE NIL+E+I PP I+  +++ +TG SSNV D LP    S +
Sbjct: 107 VIVYELLEEMLDNGFPLATESNILKELIKPPTILRSVVNSITG-SSNVGDTLPTGQLSNI 165

Query: 128 PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP 187
           PWR   VKY NNE Y D+VEE+DAII++ G  V  EI G +     LSG+PDL+LSF NP
Sbjct: 166 PWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNP 225

Query: 188 SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SDA 244
            +L DV FHPC+RF+ WES ++LSF+PPDG F+L+SYRV  + L + P+YVK  ++  + 
Sbjct: 226 RLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKEN 285

Query: 245 GTC-RISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGR 302
            +C R  + +G + + GKTI+ I +   +P  +L+ +LT   G+       K+ TW +G+
Sbjct: 286 SSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGK 345

Query: 303 IPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGF 362
           I   K PSL G + L++G       P+  ++F+I  +A+SGL++++LD+     + +KG 
Sbjct: 346 ITPQKLPSLKGLVNLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGV 405

Query: 363 RAVTRAGEYEVRS 375
           + VT+AG+++VR+
Sbjct: 406 KYVTKAGKFQVRT 418
Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.
Pongo abelii (taxid: 9601)
>sp|Q9Y2T2|AP3M1_HUMAN AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZMP7|AP3M1_CHICK AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q24K11|AP3M1_BOVIN AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JKC8|AP3M1_MOUSE AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1 Back     alignment and function description
>sp|P53676|AP3M1_RAT AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1 Back     alignment and function description
>sp|P47795|AP1M_DIPOM AP-1 complex subunit mu OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description
>sp|P53678|AP3M2_RAT AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2R9|AP3M2_MOUSE AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|P53677|AP3M2_HUMAN AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
255542950415 clathrin coat adaptor ap3 medium chain, 0.992 0.896 0.868 0.0
225450531415 PREDICTED: AP-3 complex subunit mu-1 [Vi 0.981 0.886 0.858 0.0
224122880415 predicted protein [Populus trichocarpa] 0.992 0.896 0.846 0.0
224124446415 predicted protein [Populus trichocarpa] 0.992 0.896 0.846 0.0
356505759415 PREDICTED: AP-3 complex subunit mu-1-lik 0.992 0.896 0.841 0.0
288551435415 clathrin-associated adaptor complexes me 0.992 0.896 0.854 0.0
363808242415 uncharacterized protein LOC100799191 [Gl 0.992 0.896 0.838 0.0
356535002415 PREDICTED: AP-3 complex subunit mu-1-lik 0.992 0.896 0.830 0.0
449443514415 PREDICTED: AP-3 complex subunit mu-1-lik 0.992 0.896 0.825 0.0
449520597415 PREDICTED: AP-3 complex subunit mu-1-lik 0.992 0.896 0.822 0.0
>gi|255542950|ref|XP_002512538.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] gi|223548499|gb|EEF49990.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/372 (86%), Positives = 341/372 (91%)

Query: 4   LKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLI 63
            K   VIASPTHY+FQIVR GITFLACTQVEMPPLM IEFLCRVA+ILSDYL  LNEDLI
Sbjct: 44  FKQQSVIASPTHYLFQIVREGITFLACTQVEMPPLMAIEFLCRVANILSDYLEGLNEDLI 103

Query: 64  KDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGAT 123
           KDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSD LP AT
Sbjct: 104 KDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDTLPNAT 163

Query: 124 ASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLS 183
           +SCVPWR TDVKYANNEVYVDLVEEMDAIINRDGVL+KCEIYGE+QVN  ++G+PDLTLS
Sbjct: 164 SSCVPWRTTDVKYANNEVYVDLVEEMDAIINRDGVLMKCEIYGELQVNSHITGVPDLTLS 223

Query: 184 FANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSD 243
           F NPSIL DVRFHPCVRFRPWESHQILSFVPPDG FKLMSYRVKKLK+ PIYVKPQLTSD
Sbjct: 224 FTNPSILDDVRFHPCVRFRPWESHQILSFVPPDGLFKLMSYRVKKLKTVPIYVKPQLTSD 283

Query: 244 AGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRI 303
           AGTCRI++MVGI+NDPGK IDSI +QF LPPCILSADLTSNHG VNVLSNK+C WSI RI
Sbjct: 284 AGTCRINLMVGIKNDPGKMIDSINVQFHLPPCILSADLTSNHGVVNVLSNKMCVWSIDRI 343

Query: 304 PKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFR 363
           PKDK PSLSGT+VLETGLE L VFP FQ+ FRI GVALSGLQIDKLDL+ VPNRLYKGFR
Sbjct: 344 PKDKTPSLSGTLVLETGLERLHVFPIFQLSFRIQGVALSGLQIDKLDLKVVPNRLYKGFR 403

Query: 364 AVTRAGEYEVRS 375
           A+TRAG YEVRS
Sbjct: 404 ALTRAGLYEVRS 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450531|ref|XP_002281428.1| PREDICTED: AP-3 complex subunit mu-1 [Vitis vinifera] gi|296089804|emb|CBI39623.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122880|ref|XP_002318939.1| predicted protein [Populus trichocarpa] gi|222857315|gb|EEE94862.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124446|ref|XP_002330025.1| predicted protein [Populus trichocarpa] gi|222871450|gb|EEF08581.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505759|ref|XP_003521657.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|288551435|gb|ADC53238.1| clathrin-associated adaptor complexes medium subunit [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|363808242|ref|NP_001242747.1| uncharacterized protein LOC100799191 [Glycine max] gi|255641304|gb|ACU20929.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356535002|ref|XP_003536038.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449443514|ref|XP_004139522.1| PREDICTED: AP-3 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520597|ref|XP_004167320.1| PREDICTED: AP-3 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2027564415 ZIP4 "AT1G56590" [Arabidopsis 0.986 0.891 0.808 2.2e-167
UNIPROTKB|F2Z4I2418 AP3M1 "AP-3 complex subunit mu 0.978 0.877 0.461 3.6e-89
UNIPROTKB|Q9Y2T2418 AP3M1 "AP-3 complex subunit mu 0.978 0.877 0.461 3.6e-89
UNIPROTKB|Q5R478418 AP3M1 "AP-3 complex subunit mu 0.978 0.877 0.461 3.6e-89
RGD|70969418 Ap3m2 "adaptor-related protein 0.978 0.877 0.469 3.6e-89
UNIPROTKB|F1SU34418 AP3M1 "Uncharacterized protein 0.978 0.877 0.461 4.6e-89
UNIPROTKB|E1C4U4418 AP3M2 "Uncharacterized protein 0.976 0.875 0.457 9.6e-89
UNIPROTKB|Q5ZMP7418 AP3M1 "AP-3 complex subunit mu 0.976 0.875 0.449 9.6e-89
UNIPROTKB|Q24K11418 AP3M1 "AP-3 complex subunit mu 0.978 0.877 0.461 9.6e-89
MGI|MGI:1929214418 Ap3m2 "adaptor-related protein 0.978 0.877 0.466 9.6e-89
TAIR|locus:2027564 ZIP4 "AT1G56590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
 Identities = 299/370 (80%), Positives = 340/370 (91%)

Query:     5 KSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIK 64
             K++PVIASPTHY+FQIVR GITFLAC+QVEMPPLM IEFLCRVAD+LS+YLG LNEDLIK
Sbjct:    45 KALPVIASPTHYLFQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIK 104

Query:    65 DNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATA 124
             DNF+IVYELLDEMIDNGFPLTTEP+IL+EMIAPPN+VSKMLSVVTGN+SNVSD LP    
Sbjct:   105 DNFIIVYELLDEMIDNGFPLTTEPSILKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAG 164

Query:   125 SCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSF 184
             SCVPWRPTD KY++NEVYVDLVEEMDAI+NRDG LVKCEIYGEVQ+N  L+G PDLTLSF
Sbjct:   165 SCVPWRPTDPKYSSNEVYVDLVEEMDAIVNRDGELVKCEIYGEVQMNSQLTGFPDLTLSF 224

Query:   185 ANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDA 244
             ANPSIL D+RFHPCVR+RPWESHQ+LSFVPPDG+FKLMSYRVKKLK+TP+YVKPQ+TSD+
Sbjct:   225 ANPSILEDMRFHPCVRYRPWESHQVLSFVPPDGEFKLMSYRVKKLKNTPVYVKPQITSDS 284

Query:   245 GTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIP 304
             GTCRISV+VGIR+DPGKTI+SI L FQLP C+ SADL+SNHGTV +LSNK CTW+IGRIP
Sbjct:   285 GTCRISVLVGIRSDPGKTIESITLSFQLPHCVSSADLSSNHGTVTILSNKTCTWTIGRIP 344

Query:   305 KDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRA 364
             KDK P LSGT+ LE GLE L VFPTF++ F+IMG+ALSGL+I+KLDLQ +P RLYKGFRA
Sbjct:   345 KDKTPCLSGTLALEPGLERLHVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRA 404

Query:   365 VTRAGEYEVR 374
              TRAGE++VR
Sbjct:   405 QTRAGEFDVR 414
GO:0005622 "intracellular" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009630 "gravitropism" evidence=IMP
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
UNIPROTKB|F2Z4I2 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2T2 AP3M1 "AP-3 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R478 AP3M1 "AP-3 complex subunit mu-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|70969 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU34 AP3M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4U4 AP3M2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP7 AP3M1 "AP-3 complex subunit mu-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K11 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1929214 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q24K11AP3M1_BOVINNo assigned EC number0.46110.97860.8779yesno
Q5R478AP3M1_PONABNo assigned EC number0.46110.97860.8779yesno
Q9JKC8AP3M1_MOUSENo assigned EC number0.45840.97860.8779yesno
Q9Y2T2AP3M1_HUMANNo assigned EC number0.46110.97860.8779yesno
P53676AP3M1_RATNo assigned EC number0.45430.9760.8755yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.30560.92260.8122yesno
Q9GPF1AP3M_DICDINo assigned EC number0.43080.9760.8693yesno
Q5ZMP7AP3M1_CHICKNo assigned EC number0.44770.97860.8779yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022573001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (415 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-111
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 2e-73
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 9e-69
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 2e-63
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 3e-45
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 1e-35
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 2e-30
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 7e-30
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 4e-29
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 3e-25
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 1e-16
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 8e-12
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-05
cd09257246 cd09257, AP_muniscins_like_MHD, Mu-homology domain 7e-04
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 0.001
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information 
 Score =  325 bits (835), Expect = e-111
 Identities = 116/248 (46%), Positives = 162/248 (65%), Gaps = 3/248 (1%)

Query: 127 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 186
           VPWR   VKY NNE+YVD+VEE+DAI+++ G  V  E+ G +  N  LSG+PDLTLS  N
Sbjct: 1   VPWRRAGVKYTNNEIYVDVVEEIDAIVDKSGKPVSGEVSGSIDCNSRLSGMPDLTLSLNN 60

Query: 187 PSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVK--KLKSTPIYVKPQLTSDA 244
           P +L D  FHPCVR   WES ++LSF+PPDG+F LMSYRV    L   P+YVKPQ++   
Sbjct: 61  PGLLDDPSFHPCVRLSRWESDRVLSFIPPDGKFTLMSYRVDLNSLVQLPVYVKPQISLGK 120

Query: 245 GTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVL-SNKICTWSIGRI 303
           G  R  + VG R + GKTI++++++  LP  + S  LT++HGT +   S K   WSIG++
Sbjct: 121 GGGRFEISVGPRGNLGKTIENVVVEIPLPKGVKSLRLTASHGTFSFDSSTKTLVWSIGKL 180

Query: 304 PKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFR 363
              K P+L G++ LE+G E     P+  V F+I G   SGL++D LD+ N   + +KG +
Sbjct: 181 TPGKTPTLRGSISLESGEEAPSEPPSISVSFKIPGYLPSGLKVDSLDIYNEKYKPFKGVK 240

Query: 364 AVTRAGEY 371
            +T+AG+Y
Sbjct: 241 YITKAGKY 248

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric adaptor protein complex 3 (AP-3) medium mu3 subunit, which includes two closely related homologs, mu3A (P47A, encoded by ap3m1) and mu1B (P47B, encoded by ap3m2). Mu3A is ubiquitously expressed, but mu3B is specifically expressed in neurons and neuroendocrine cells. AP-3 is particularly important for targeting integral membrane proteins to lysosomes and lysome-related organelles at trans-Golgi network (TGN) and/or endosomes, such as the yeast vacuole, fly pigment granules and mammalian melanosomes, platelet dense bodies and the secretory lysosomes of cytotoxic T lymphocytes. Unlike AP-1 and AP-2, which function in conjunction with clathrin which is a scaffolding protein participating in the formation of coated vesicles, the nature of the outer shell of AP-3 containing coats remains to be elucidated. Membrane-anchored cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-3 mu3 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 248
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211368 cd09257, AP_muniscins_like_MHD, Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.74
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.27
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 98.97
KOG0934145 consensus Clathrin adaptor complex, small subunit 98.93
KOG0935143 consensus Clathrin adaptor complex, small subunit 98.74
KOG0936182 consensus Clathrin adaptor complex, small subunit 98.42
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 97.96
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 96.65
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 92.93
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 92.27
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-90  Score=630.82  Aligned_cols=367  Identities=29%  Similarity=0.537  Sum_probs=332.9

Q ss_pred             CCceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHhHhhCCcccc
Q 017238            6 SMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLT   85 (375)
Q Consensus         6 ~~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~l~e~~i~~n~~~i~~llde~id~G~p~~   85 (375)
                      -+||.+.|++.|+|++.+++|+|++|..|.|.+++++||..+.+++..|||.++|+.|++||.+||||||||+||||||+
T Consensus        43 r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqn  122 (446)
T KOG0938|consen   43 RSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQN  122 (446)
T ss_pred             CCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCcc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHhhhcCCCcchhccc--ccccCCCCCccCCCCCCCCcCCcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEE
Q 017238           86 TEPNILREMIAPPNIVSKML--SVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCE  163 (375)
Q Consensus        86 t~~~~lk~~i~~~s~~~k~~--~~~~g~~~~~~~~~~~~~~~~~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~  163 (375)
                      |+++.|+.+|..+...++.-  +......+++.....+.....++||+.|++|++||+|+||.|+++..++++|++++++
T Consensus       123 te~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~  202 (446)
T KOG0938|consen  123 TEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSD  202 (446)
T ss_pred             CChhHHHhhhhhhhhhccccccCCcCCCCcccccccccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEee
Confidence            99999999999887755411  1000001111112223456789999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEeeCCCCeeEEEecCCc---------------------------ccccceecceeecCCCCCCceEEEeCCC
Q 017238          164 IYGEVQVNCLLSGLPDLTLSFANPS---------------------------ILHDVRFHPCVRFRPWESHQILSFVPPD  216 (375)
Q Consensus       164 v~G~i~~~~~LsG~P~~~l~ln~~~---------------------------~l~d~~fH~cV~~~~f~~~~~i~f~PPd  216 (375)
                      |.|.|.|+++|||||+|+++|||..                           .++||+||+||++++|++++.|+|+|||
T Consensus       203 VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPD  282 (446)
T KOG0938|consen  203 VSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPD  282 (446)
T ss_pred             cccEEEEEEeccCCcccccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCC
Confidence            9999999999999999999999863                           2899999999999999999999999999


Q ss_pred             CcEEEEEEEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCC--CceeeEEEEEeCCCCceeeEEEEcceeceeEeC-
Q 017238          217 GQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTIDSIILQFQLPPCILSADLTSNHGTVNVLSN-  293 (375)
Q Consensus       217 G~F~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~~~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~-  293 (375)
                      |+|+||+||++...++||.|.|.++.- +..++++.+++++.++  ..+.+|.++||+|+++..++++++.|++ +|.+ 
T Consensus       283 Ge~ELMkYr~~enInlPFrV~PiV~el-~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gka-ky~ps  360 (446)
T KOG0938|consen  283 GEFELMKYRVTENINLPFRVTPIVTEL-GRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKA-KYVPS  360 (446)
T ss_pred             CceEeEeeeeccCcccceEeeeheecc-cceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCcc-ccCcc
Confidence            999999999999999999999999854 5799999999999875  3899999999999999999999999999 9999 


Q ss_pred             -cEEEEEeCCCCCCCCceEEEEEEeecCC--cCCCCCccEEEEEEECceeccccEEeEEEe-e-cCCCcccccEEEEEec
Q 017238          294 -KICTWSIGRIPKDKAPSLSGTMVLETGL--ETLRVFPTFQVEFRIMGVALSGLQIDKLDL-Q-NVPNRLYKGFRAVTRA  368 (375)
Q Consensus       294 -~~l~W~I~~~~~~~~~~l~g~~~~~~~~--~~~~~~~~i~v~F~i~~~s~SGl~V~~l~v-~-~~~~~~~k~vky~t~s  368 (375)
                       ++++|+|.++.|.+|.+++|++++.+..  ...|..|||+++|++|+++.|||.|++++| + +++|+..|||||+|+|
T Consensus       361 en~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitka  440 (446)
T KOG0938|consen  361 ENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKA  440 (446)
T ss_pred             cceEEEEecccCCcccceeEEEEEeccCccccccccCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEeccc
Confidence             9999999999999999999999997654  234789999999999999999999999999 3 5789999999999999


Q ss_pred             ccEEEc
Q 017238          369 GEYEVR  374 (375)
Q Consensus       369 g~y~ir  374 (375)
                      |+||+|
T Consensus       441 GsyEiR  446 (446)
T KOG0938|consen  441 GSYEIR  446 (446)
T ss_pred             ceeeeC
Confidence            999998

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 3e-57
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 4e-41
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 5e-36
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-34
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 6e-24
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 2e-21
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-18
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 6e-18
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 1e-17
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-17
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-16
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 1e-14
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 9e-12
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/254 (40%), Positives = 163/254 (64%), Gaps = 5/254 (1%)
Query: 127 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 186
           +PWR   VKY NNE Y D+VEE+DAII++ G  V  EI G +     LSG+PDL+LSF N
Sbjct: 8   IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 187 PSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SD 243
           P +L DV FHPC+RF+ WES ++LSF+PPDG F+L+SYRV  + L + P+YVK  ++  +
Sbjct: 68  PRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHNISFKE 127
Query: 244 AGTC-RISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIG 301
             +C R  + +G + + GKTI+ I +   +P  +L+ +LT   G+       K+  W +G
Sbjct: 128 NSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVG 187
Query: 302 RIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKG 361
           +I   K PSL G + L++G       P   ++F+I  +A+SGL++++LD+     + +KG
Sbjct: 188 KITPQKLPSLKGLVNLQSGAPKPEENPNLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKG 247
Query: 362 FRAVTRAGEYEVRS 375
            + +T+AG+++VR+
Sbjct: 248 VKYITKAGKFQVRT 261
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 3e-79
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 5e-75
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 5e-68
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 6e-68
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-61
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 1e-59
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 6e-17
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-16
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  249 bits (635), Expect = 3e-79
 Identities = 97/395 (24%), Positives = 169/395 (42%), Gaps = 34/395 (8%)

Query: 8   PVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNF 67
           PV        F + R+ I   A T+  +   M  EFL ++ D+++ Y G+++E+ IK+NF
Sbjct: 46  PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNF 105

Query: 68  VIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCV 127
           V++YELLDE++D G+P  +E   L+  I    I S+  +    +               +
Sbjct: 106 VLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITS------QVTGQI 159

Query: 128 PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP 187
            WR   +KY  NE+++D++E ++ +++  G ++   + G V +   LSG+P+      + 
Sbjct: 160 GWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDK 219

Query: 188 ---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV 226
                                  + D  FH CVR   ++S + +SF+PPDG+F+LM YR 
Sbjct: 220 IVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRT 279

Query: 227 KKLKSTPIYVKPQLTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNH 285
            K    P  V P +     T   + V++     P      I ++   P       +    
Sbjct: 280 TKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMK 339

Query: 286 GTVN-VLSNKICTWSIGRIPKDKAPSLSGTMVLETG-----LETLRVFPTFQVEFRIMGV 339
           G      S     W I R+   K   +S  + L             +   F+V F   G+
Sbjct: 340 GKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGL 399

Query: 340 ALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 374
            +  L++ +  L    + + K  R + R+G YE R
Sbjct: 400 KVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 434
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.87
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.84
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.8
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.12
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 89.8
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 89.77
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 89.04
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 85.42
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=1.1e-85  Score=657.44  Aligned_cols=362  Identities=27%  Similarity=0.510  Sum_probs=319.8

Q ss_pred             CCCceEEeCCEEEEEEEeCCEEEEEEEcCCCChhhHHHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHhHhhCCccc
Q 017238            5 KSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPL   84 (375)
Q Consensus         5 ~~~Pv~~~~~~~~~~~~~~~l~~v~v~~~~~n~~~~~~~L~~~~~vl~~y~~~l~e~~i~~n~~~i~~llde~id~G~p~   84 (375)
                      +.+|+++.++++++|+++++|||+++++.+.|++++++|||++.++|++|||+++|+.|++||+.+|++||||+|+|+|+
T Consensus        43 ~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~  122 (435)
T 2vgl_M           43 VRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQ  122 (435)
T ss_dssp             CCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEEC
T ss_pred             CCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChHHHhhhcCCCcchhcccccccCCCCCccCCCCCCCCcCCcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEE
Q 017238           85 TTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEI  164 (375)
Q Consensus        85 ~t~~~~lk~~i~~~s~~~k~~~~~~g~~~~~~~~~~~~~~~~~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~v  164 (375)
                      +|++++|++++.++++.+++... .+     +...|+++.+++|||+.|++|++|||||||+|+++++++++|.+++++|
T Consensus       123 ~t~~~~l~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV  196 (435)
T 2vgl_M          123 NSETGALKTFITQQGIKSQHQTK-EE-----QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHV  196 (435)
T ss_dssp             CCCHHHHGGGCCCCCCCCC-----------------------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEE
T ss_pred             ecCHHHHHHHhcccccccccccc-cc-----ccccccccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEE
Confidence            99999999999999987765311 11     1234456677899999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeeCCCCeeEEEecCC---------------------cccccceecceeecCCCCCCceEEEeCCCCcEEEEE
Q 017238          165 YGEVQVNCLLSGLPDLTLSFANP---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMS  223 (375)
Q Consensus       165 ~G~i~~~~~LsG~P~~~l~ln~~---------------------~~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~  223 (375)
                      .|+|.|+|+|+|+|+|+|+||++                     ..++||+|||||++++|+++|.|+|+||||+|+||+
T Consensus       197 ~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~  276 (435)
T 2vgl_M          197 SGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMR  276 (435)
T ss_dssp             EEEEEEEEECSSCCEEEEEECSSSCC-----------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEE
T ss_pred             EEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEE
Confidence            99999999999999999999874                     257899999999999999999999999999999999


Q ss_pred             EEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCCC--ceeeEEEEEeCCCCceeeEEEEcceeceeEeC--cEEEEE
Q 017238          224 YRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWS  299 (375)
Q Consensus       224 Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~~--~~~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~  299 (375)
                      ||++....+||.++||++.. +++++|+.++++++++.  .+++|.|+||+|+.+..+.+++++|++ +|++  ++++|+
T Consensus       277 Yr~~~~~~~P~~i~~~~~~~-~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~  354 (435)
T 2vgl_M          277 YRTTKDIILPFRVIPLVREV-GRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWK  354 (435)
T ss_dssp             EEECSSCCCSEEEEEEEECC-TTTEEEEEEEEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEE-EEETTTTEEEEE
T ss_pred             EEecCCcCCCeEEEEEEEec-CCCEEEEEEEEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeE-EEccCCCEEEEE
Confidence            99998888999999999954 45789999998876653  699999999999999999999999999 9988  999999


Q ss_pred             eCCCCCCCCceEEEEEEeecCC-cCCCCCccEEEEEEECceeccccEEeEEEeec-----CCCcccccEEEEEecccEEE
Q 017238          300 IGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEFRIMGVALSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYEV  373 (375)
Q Consensus       300 I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~s~SGl~V~~l~v~~-----~~~~~~k~vky~t~sg~y~i  373 (375)
                      |++++++.+++++|+++|.+.. ...+.++||+|+|++| +++||++|+++++.+     ++|+|+|||||+|+||+|++
T Consensus       355 I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~  433 (435)
T 2vgl_M          355 IKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET  433 (435)
T ss_dssp             EEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEE
T ss_pred             eccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEE
Confidence            9999999999999999997643 3456799999999999 999999999999944     37999999999999999999


Q ss_pred             cC
Q 017238          374 RS  375 (375)
Q Consensus       374 r~  375 (375)
                      |+
T Consensus       434 R~  435 (435)
T 2vgl_M          434 RC  435 (435)
T ss_dssp             CC
T ss_pred             cC
Confidence            96
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 2e-68
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 9e-25
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 4e-18
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  214 bits (547), Expect = 2e-68
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 28/276 (10%)

Query: 127 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 186
           + WR   +KY  NE+++D++E ++ +++  G ++   + G V +   LSG+P+      +
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 187 P---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYR 225
                                   + D  FH CVR   ++S + +SF+PPDG+F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 226 VKKLKSTPIYVKPQLTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSN 284
             K    P  V P +     T   + V++     P      I ++   P       +   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 285 HGTVN-VLSNKICTWSIGRIPKDKAPSLSGTMVL-ETGLETLRVFPTFQVEFRIM----G 338
            G      S     W I R+   K   +S  + L  T  +     P   + F +     G
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSG 240

Query: 339 VALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 374
           + +  L++ +  L    + + K  R + R+G YE R
Sbjct: 241 LKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 99.9
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.8
d1ifqa_127 Sec22b {Mouse (Mus musculus) [TaxId: 10090]} 86.91
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-62  Score=459.83  Aligned_cols=246  Identities=26%  Similarity=0.490  Sum_probs=220.1

Q ss_pred             CcccCCCCCcccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeeEEEecCCc------------------
Q 017238          127 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS------------------  188 (375)
Q Consensus       127 ~~WR~~~~~~~~nei~vdV~E~v~~~~~~~G~i~~~~v~G~i~~~~~LsG~P~~~l~ln~~~------------------  188 (375)
                      +|||+.|++|++|||||||+|+++++++++|.++.++|.|+|.|+|+|+|+|+|+|+||++.                  
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            69999999999999999999999999999999999999999999999999999999998653                  


Q ss_pred             ---ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCccEEEEEEEeecCCC--Cce
Q 017238          189 ---ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTI  263 (375)
Q Consensus       189 ---~l~d~~fH~cV~~~~f~~~~~i~f~PPdG~F~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~~  263 (375)
                         .++|++||+||+++.|++++.|+|+||||+|+||+||++....+||.+.+++.... +.++++.++++++.+  ..+
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~-~~~~~~~i~l~~~~~~~~~~  159 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFKPSLLA  159 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEET-TTEEEEEEEEEECSCTTCEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEecc-CcEEEEEEEEEeccCCCeee
Confidence               48999999999999999999999999999999999999988899999999998654 567888888887644  389


Q ss_pred             eeEEEEEeCCCCceeeEEEEcceeceeEeC--cEEEEEeCCCCCCCCceEEEEEEeecCCcCC-CCCccEEEEEEECcee
Q 017238          264 DSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGLETL-RVFPTFQVEFRIMGVA  340 (375)
Q Consensus       264 ~~v~I~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~i~v~F~i~~~s  340 (375)
                      ++|.|+||+|..+..++++++.|++ +|+.  ++++|+|++++++.+++|+|++++.+..... ..++|++|+|++| ++
T Consensus       160 ~~v~I~iP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         160 QKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEEECCTTEEEEEEEESSSEE-EEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SC
T ss_pred             eEEEEEeeCCCcccCceEEecCceE-EEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCCcEEEEEEec-cc
Confidence            9999999999999999999999999 9998  9999999999999999999999997654333 4588999999999 79


Q ss_pred             ccccEEeEEEeec-----CCCcccccEEEEEecccEEEcC
Q 017238          341 LSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYEVRS  375 (375)
Q Consensus       341 ~SGl~V~~l~v~~-----~~~~~~k~vky~t~sg~y~ir~  375 (375)
                      +||++|++|+|.+     ++|+++|||||+|+||+|++|.
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            9999999999943     4689999999999999999995
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure