Citrus Sinensis ID: 017253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFEEAEKVRKAREEEVIRIT
cHHHHHHHHHHHccccEEEEEEccccccccccEEEcccccccccccEEEEEccccccccccccEEEccccccEEEEEccccccccccEEEEEEEEEEcccccccccEEEccccccccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccEEEEEEccccEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccc
cHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccEEccccEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEccccccHHHccccccEEEEEccccccccccEEEEEEEEcccccEEcEcEcccccccEEEEEEEEcccccEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEEccccEEccEEEEccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcc
MMLKLLVLFLFFQISVSEIFFeerfddgwrsrwvisdwkrsegkagyfkhtagkwhgdpddkgiqthTDARHYAISakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQkkfggdapyslmfgpdicgtqkKHLHVILSYqgqnypikkelecetdKLTHFYTfilrpdasysilidnrerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkipyidnpefeddpdlyvlkpikYVGIEVWQvkagsvydnilicddpAYAKQVVEEVLSNREIEKEGFEEAEKVRKAREEEVIRIT
MMLKLLVLFLFFQISVSEIFFeerfddgwrsRWVISDWKRSEGKAGYFKhtagkwhgdpddKGIQTHTDARHYAIsakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTfilrpdasysILIDNRerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLsnreiekegfeeaekvrkareeevirit
MMlkllvlflffQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNReiekegfeeaekvrkareeevIRIT
**LKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVN***************************************************************W***RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVL****************************
*MLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKI**********WDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN**************************
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPK***********DGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEK*********************
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREI*KEGFEEAEKVR***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFEEAEKVRKAREEEVIRIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
O04153424 Calreticulin-3 OS=Arabido yes no 0.978 0.863 0.778 1e-172
Q40401416 Calreticulin OS=Nicotiana N/A no 0.917 0.824 0.645 1e-130
P93508415 Calreticulin OS=Ricinus c N/A no 0.887 0.8 0.656 1e-129
O04151425 Calreticulin-1 OS=Arabido no no 0.941 0.828 0.623 1e-128
Q9ZPP1416 Calreticulin OS=Berberis N/A no 0.935 0.841 0.644 1e-128
Q38858424 Calreticulin-2 OS=Arabido no no 0.949 0.837 0.615 1e-128
O81919416 Calreticulin OS=Beta vulg N/A no 0.917 0.824 0.630 1e-126
Q9XF98421 Calreticulin OS=Prunus ar N/A no 0.903 0.802 0.646 1e-125
Q9SLY8424 Calreticulin OS=Oryza sat no no 0.911 0.804 0.611 1e-120
Q9SP22420 Calreticulin OS=Zea mays N/A no 0.909 0.809 0.607 1e-117
>sp|O04153|CALR3_ARATH Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2 Back     alignment and function desciption
 Score =  606 bits (1562), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/375 (77%), Positives = 329/375 (87%), Gaps = 9/375 (2%)

Query: 4   KLLVLFLFFQISV--------SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKW 55
           KL     FF +SV        SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW
Sbjct: 7   KLSFFCFFFLVSVLTLAPLAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKW 66

Query: 56  HGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYV 115
            GDPD+KGIQT+ DA+HYAISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YV
Sbjct: 67  PGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYV 126

Query: 116 NQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILR 175
           NQK+FGGD PYSLMFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILR
Sbjct: 127 NQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILR 186

Query: 176 PDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235
           PDASYS+L+DN+ER+ GSMYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+D
Sbjct: 187 PDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFD 246

Query: 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDN 295
           SIP+EIPD KAK+P++WDE+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDN
Sbjct: 247 SIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDN 306

Query: 296 PEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS-NREIEKE 354
           PEFEDDPDLYVLK IKY GIEVWQVKAGS++DNILICDDPAYA+ +V++  + +RE EKE
Sbjct: 307 PEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRESEKE 366

Query: 355 GFEEAEKVRKAREEE 369
            F EAEK RKARE+E
Sbjct: 367 LFAEAEKERKAREDE 381
Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1 Back     alignment and function description
>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPP1|CALR_BERST Calreticulin OS=Berberis stolonifera PE=2 SV=1 Back     alignment and function description
>sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 Back     alignment and function description
>sp|O81919|CALR_BETVU Calreticulin OS=Beta vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q9SLY8|CALR_ORYSJ Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2 Back     alignment and function description
>sp|Q9SP22|CALR_MAIZE Calreticulin OS=Zea mays GN=CRT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
255638717408 unknown [Glycine max] 0.967 0.887 0.828 0.0
356566955421 PREDICTED: calreticulin-3-like, partial 0.967 0.859 0.831 0.0
255547520423 calreticulin, putative [Ricinus communis 0.973 0.860 0.854 1e-180
356531872422 PREDICTED: calreticulin-3-like [Glycine 0.967 0.857 0.820 1e-179
224146178421 predicted protein [Populus trichocarpa] 0.986 0.876 0.850 1e-178
224093048424 predicted protein [Populus trichocarpa] 0.965 0.851 0.812 1e-177
217074662393 unknown [Medicago truncatula] 0.967 0.921 0.832 1e-174
357507831421 Calreticulin-3 [Medicago truncatula] gi| 0.967 0.859 0.832 1e-174
356545437418 PREDICTED: calreticulin-3-like [Glycine 0.893 0.799 0.865 1e-173
297849152423 hypothetical protein ARALYDRAFT_888076 [ 0.981 0.867 0.785 1e-172
>gi|255638717|gb|ACU19663.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/362 (82%), Positives = 334/362 (92%)

Query: 5   LLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGI 64
           L  L L  Q++VSEI FEERFDDGWRSRWV SDWK SEGKAG FKHTAGKW GDPDDKGI
Sbjct: 14  LFCLLLLIQVAVSEIVFEERFDDGWRSRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGI 73

Query: 65  QTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDA 124
           QT +DA+H+AISAKIPEF+NKNRTLV+QYS++FEQ+IECGGGYIKLLS +VNQKKFGGD 
Sbjct: 74  QTSSDAKHFAISAKIPEFTNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDT 133

Query: 125 PYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILI 184
           PY LMFGPD+CGT  K LHVILSY GQNYPIKK+L+CETD+LTHFYTFILRPDA+YS+L+
Sbjct: 134 PYILMFGPDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDRLTHFYTFILRPDATYSVLV 193

Query: 185 DNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDP 244
           DNRERDSGSMYTDWDILPPRKIK V AKKPADW++REYI+DP+ VKPEGYDSIP+EIPDP
Sbjct: 194 DNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEREYIEDPDDVKPEGYDSIPREIPDP 253

Query: 245 KAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDL 304
            AK+P+NWDE+EDG WKPPKIPNPAYKGPW+ K+IKNPNYKG+WK P+IDNPEFEDDPDL
Sbjct: 254 NAKEPENWDEEEDGKWKPPKIPNPAYKGPWKRKKIKNPNYKGRWKTPWIDNPEFEDDPDL 313

Query: 305 YVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFEEAEKVRK 364
           YVLKPIKYVGIEVWQVK GSV+DN+LICDDP YAKQVVEEV +NREIEKEGFEEAEKVRK
Sbjct: 314 YVLKPIKYVGIEVWQVKGGSVFDNVLICDDPDYAKQVVEEVFANREIEKEGFEEAEKVRK 373

Query: 365 AR 366
           A+
Sbjct: 374 AK 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356566955|ref|XP_003551690.1| PREDICTED: calreticulin-3-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|255547520|ref|XP_002514817.1| calreticulin, putative [Ricinus communis] gi|223545868|gb|EEF47371.1| calreticulin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356531872|ref|XP_003534500.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|224146178|ref|XP_002325909.1| predicted protein [Populus trichocarpa] gi|222862784|gb|EEF00291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224093048|ref|XP_002309786.1| predicted protein [Populus trichocarpa] gi|222852689|gb|EEE90236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074662|gb|ACJ85691.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357507831|ref|XP_003624204.1| Calreticulin-3 [Medicago truncatula] gi|355499219|gb|AES80422.1| Calreticulin-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356545437|ref|XP_003541149.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|297849152|ref|XP_002892457.1| hypothetical protein ARALYDRAFT_888076 [Arabidopsis lyrata subsp. lyrata] gi|297338299|gb|EFH68716.1| hypothetical protein ARALYDRAFT_888076 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
TAIR|locus:2201816424 CRT3 "calreticulin 3" [Arabido 0.885 0.780 0.815 1.7e-160
UNIPROTKB|P93508415 P93508 "Calreticulin" [Ricinus 0.885 0.797 0.658 1e-132
TAIR|locus:2195326424 CRT1b "calreticulin 1b" [Arabi 0.885 0.780 0.643 5.2e-129
TAIR|locus:2010723425 CRT1a "calreticulin 1a" [Arabi 0.877 0.771 0.649 2.2e-128
UNIPROTKB|Q9SLY8424 LOC_Os07g14270 "Calreticulin" 0.874 0.771 0.629 5.5e-125
DICTYBASE|DDB_G0283539424 crtA "calreticulin" [Dictyoste 0.879 0.775 0.501 7.1e-100
ZFIN|ZDB-GENE-000208-17418 calr "calreticulin" [Danio rer 0.863 0.772 0.524 3.5e-98
ZFIN|ZDB-GENE-030131-4042419 calrl2 "calreticulin, like 2" 0.866 0.773 0.510 1.4e-96
ZFIN|ZDB-GENE-030131-9907417 calrl "calreticulin like" [Dan 0.866 0.776 0.519 1.8e-96
UNIPROTKB|Q7Z1E6398 crt "Calreticulin" [Bombyx mor 0.877 0.824 0.520 3.7e-96
TAIR|locus:2201816 CRT3 "calreticulin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
 Identities = 270/331 (81%), Positives = 305/331 (92%)

Query:    14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHY 73
             ++ SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW GDPD+KGIQT+ DA+HY
Sbjct:    25 LAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHY 84

Query:    74 AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
             AISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YVNQK+FGGD PYSLMFGPD
Sbjct:    85 AISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPD 144

Query:   134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
             ICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILRPDASYS+L+DN+ER+ GS
Sbjct:   145 ICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGS 204

Query:   194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
             MYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+DSIP+EIPD KAK+P++WD
Sbjct:   205 MYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWD 264

Query:   254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYV 313
             E+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDNPEFEDDPDLYVLK IKY 
Sbjct:   265 EEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYA 324

Query:   314 GIEVWQVKAGSVYDNILICDDPAYAKQVVEE 344
             GIEVWQVKAGS++DNILICDDPAYA+ +V++
Sbjct:   325 GIEVWQVKAGSIFDNILICDDPAYARSIVDD 355
GO:0005509 "calcium ion binding" evidence=IEA;ISS
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;IGI
GO:0009507 "chloroplast" evidence=ISM
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP
GO:0055074 "calcium ion homeostasis" evidence=IGI
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
UNIPROTKB|P93508 P93508 "Calreticulin" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2195326 CRT1b "calreticulin 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010723 CRT1a "calreticulin 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SLY8 LOC_Os07g14270 "Calreticulin" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283539 crtA "calreticulin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-17 calr "calreticulin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4042 calrl2 "calreticulin, like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9907 calrl "calreticulin like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z1E6 crt "Calreticulin" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27798CALR_CAEELNo assigned EC number0.48800.87160.8253yesno
O04153CALR3_ARATHNo assigned EC number0.77860.97860.8632yesno
P18418CALR_RATNo assigned EC number0.50900.86360.7764yesno
P29413CALR_DROMENo assigned EC number0.46320.96790.8916yesno
P27797CALR_HUMANNo assigned EC number0.50600.86360.7745yesno
Q9XF98CALR_PRUARNo assigned EC number0.64600.90370.8028N/Ano
O81919CALR_BETVUNo assigned EC number0.63080.91710.8245N/Ano
Q9SP22CALR_MAIZENo assigned EC number0.60700.90900.8095N/Ano
P52193CALR_BOVINNo assigned EC number0.50300.86360.7745yesno
Q9ZPP1CALR_BERSTNo assigned EC number0.64480.93580.8413N/Ano
Q8K3H7CALR_CRIGRNo assigned EC number0.50600.86360.7745yesno
Q40401CALR_NICPLNo assigned EC number0.64530.91710.8245N/Ano
P28491CALR_PIGNo assigned EC number0.47760.91970.8249yesno
Q23858CALR_DICDINo assigned EC number0.48210.96790.8537yesno
Q9STD3CALR_CHLRENo assigned EC number0.53370.90100.8023N/Ano
Q7Z1E6CALR_BOMMONo assigned EC number0.51620.89300.8391N/Ano
P14211CALR_MOUSENo assigned EC number0.51210.86360.7764yesno
P15253CALR_RABITNo assigned EC number0.48040.91970.8229yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070148
hypothetical protein (425 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-135
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  388 bits (999), Expect = e-135
 Identities = 165/362 (45%), Positives = 216/362 (59%), Gaps = 52/362 (14%)

Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGD-PDDKGIQTHTDARHYAI 75
           ++F E+FDD   W  RW+ S  K+ +   G +K  AGK++G    DKG+ T  DA+ YAI
Sbjct: 1   VYFFEQFDDDDLWEKRWIPSKAKKDD--DGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAI 58

Query: 76  SAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDI 134
           SAK P+ FSNK +TLVVQY ++ +Q I+CGG YIKLLS   +QK F G+ PY++MFGPDI
Sbjct: 59  SAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDI 118

Query: 135 CGTQKKHLHVIL------SYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRE 188
           CG+  K +H I        Y+ + + IKK +    DKLTH YT I+RPD ++ ILID   
Sbjct: 119 CGSDTKKVHFIFRHKPITGYKEEKHLIKKPISR-CDKLTHLYTLIIRPDNTFEILIDGEV 177

Query: 189 RDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD-SIPKEIPDPK 245
             SGS+  D+D    PP++I     KKP DWDDRE I DP A KPE +D   P+ IPDP 
Sbjct: 178 VKSGSLLEDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPN 237

Query: 246 AKKPDNW-------------------DEDEDGLWKPPKIPNPA----------------- 269
           A KP+ W                   D++EDG W+ P IPNP                  
Sbjct: 238 AVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGKPPMIKNPK 297

Query: 270 YKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNI 329
           YKG W+P  I NPNYKG WK   I NP++ +DP+ Y L+PI  +G E+WQVK+G ++DNI
Sbjct: 298 YKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILFDNI 357

Query: 330 LI 331
           LI
Sbjct: 358 LI 359

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.88
KOG0675558 consensus Calnexin [Posttranslational modification 99.83
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.82
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-130  Score=946.55  Aligned_cols=352  Identities=54%  Similarity=1.055  Sum_probs=339.6

Q ss_pred             HHHHHHhhccceeeeeeccCC--CccCCCeEecccccCCCCCCcEEEeccccCCCCC-CcceeeccccchhhhhccCCCC
Q 017253            6 LVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEF   82 (374)
Q Consensus         6 ~~~~~~~~~~~~~v~F~E~F~--~~~~~rWv~S~~~k~~~~~G~~~~~~g~~~~~~~-d~GL~~~~~ak~yaIs~~l~~~   82 (374)
                      +.+|++++++++.|||.|.|.  ++|+.|||+|++++.  ..|.|.+++|+|+++++ |+||+|++++||||||++|+.|
T Consensus         8 ~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~F   85 (406)
T KOG0674|consen    8 LCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPF   85 (406)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeecccccc
Confidence            444445677788999999995  459999999999754  46999999999999987 9999999999999999999999


Q ss_pred             CCCCCceEEEEEEeeeceeeccCceEEeccccccccccCCCCCeeEEEcccccCCCCceEEEEEeecCCccccccCCccc
Q 017253           83 SNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE  162 (374)
Q Consensus        83 ~~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~~~~~~~~~~~~~  162 (374)
                      +|++|+|||||+|||+|.|+|||||||||+++.||.+|+++|||.||||||+||++|+|||+||+|+++||++++.++|+
T Consensus        86 snK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK~i~Ck  165 (406)
T KOG0674|consen   86 SNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKKDIRCK  165 (406)
T ss_pred             cccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEEEcCCCceEEEEcCeeeccCCccCCCCCCCCccccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 017253          163 TDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIP  242 (374)
Q Consensus       163 ~D~~tHlYTLii~pdntyei~IDg~~~~~gsl~~dw~~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~dWDd~p~~Ip  242 (374)
                      +|++|||||||||||+||+|+|||+.+.+|||.+||+++||+.|.||.++||+||+++++|+||+++||++|+ .|++||
T Consensus       166 ~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~pehip  244 (406)
T KOG0674|consen  166 DDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-KPEHIP  244 (406)
T ss_pred             cCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-cccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 699999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCccCcCCCCCCCcccccCccCCCCCCCCCCCCCcCCceeEeEEEEeecC
Q 017253          243 DPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKA  322 (374)
Q Consensus       243 DP~a~kP~dWd~~~dG~We~p~I~NP~ykG~W~p~~I~NP~ykG~W~~~~I~NP~Y~~d~~~~~~~~i~~vG~elW~~~~  322 (374)
                      ||+|+||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|.||.|..++.++.+.+|++||||||||+|
T Consensus       245 DpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKS  324 (406)
T KOG0674|consen  245 DPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKS  324 (406)
T ss_pred             CcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeceEEecCCHHHHHHHHHHhhcc-hhHHHhhhHHHH
Q 017253          323 GSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAE  360 (374)
Q Consensus       323 g~~FDNili~~d~~~A~~~~~~t~~~-~~~E~~~~~~~~  360 (374)
                      |+||||||||+|+++|++++++||+. +.+|+++++++.
T Consensus       325 gtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~  363 (406)
T KOG0674|consen  325 GTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKAD  363 (406)
T ss_pred             ceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhh
Confidence            99999999999999999999999998 999999987654

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
3rg0_A332 Structural And Functional Relationships Between The 4e-78
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 3e-58
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-50
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-05
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-49
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 8e-06
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 3e-49
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 2e-05
1hhn_A101 Calreticulin P-Domain Length = 101 3e-23
1k9c_A74 Solution Structure Of Calreticulin P-Domain Subdoma 3e-15
1k91_A37 Solution Structure Of Calreticulin P-Domain Subdoma 5e-06
3ici_C38 Crystal Structure Of Cyclophilin B In Complex With 8e-05
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  288 bits (736), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 210/330 (63%), Gaps = 37/330 (11%)
Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
           I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+
Sbjct: 7   IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76  SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
           SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPDIC
Sbjct: 64  SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
           G   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS+ 
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
            DWD LPP+KIK  +A KP DWD+R  IDDP   KPE                  +WD+ 
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315
             G             G W+P++I NP+YKG W  P IDNPE+  D ++Y       +G+
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGL 272
Query: 316 EVWQVKAGSVYDNILICDDPAYAKQVVEEV 345
           ++WQVK+G+++DN LI +D AYA++   E 
Sbjct: 273 DLWQVKSGTIFDNFLITNDEAYAEEFGNET 302
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74 Back     alignment and structure
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 221-256) Length = 37 Back     alignment and structure
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With Calmegin Fragment Length = 38 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-120
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-116
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 6e-73
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 7e-14
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 2e-40
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 8e-14
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
 Score =  349 bits (896), Expect = e-120
 Identities = 149/357 (41%), Positives = 219/357 (61%), Gaps = 38/357 (10%)

Query: 17  SEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHY 73
             I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR Y
Sbjct: 5   PAIYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFY 61

Query: 74  AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
           A+SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPD
Sbjct: 62  ALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPD 121

Query: 134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
           ICG   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS
Sbjct: 122 ICGPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGS 181

Query: 194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
           +  DWD LPP+KIK  +A KP DWD+R  IDDP   KPE +D                  
Sbjct: 182 LEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWD------------------ 223

Query: 254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYV 313
                             G W+P++I NP+YKG W  P IDNPE+  D ++Y       +
Sbjct: 224 -------------KGGSGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVL 270

Query: 314 GIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS-NREIEKEGFEEAEKVRKAREEE 369
           G+++WQVK+G+++DN LI +D AYA++   E     +  EK+  ++ ++ ++ + E 
Sbjct: 271 GLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEH 327
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.93
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 99.92
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.51
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.4
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.27
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-127  Score=960.55  Aligned_cols=342  Identities=38%  Similarity=0.765  Sum_probs=305.9

Q ss_pred             HhhccceeeeeeccCCCccCCCeEecccccCC------CCCCcEEEeccccCCCCCCcceeeccccchhhhhccCCC-CC
Q 017253           11 FFQISVSEIFFEERFDDGWRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FS   83 (374)
Q Consensus        11 ~~~~~~~~v~F~E~F~~~~~~rWv~S~~~k~~------~~~G~~~~~~g~~~~~~~d~GL~~~~~ak~yaIs~~l~~-~~   83 (374)
                      ...++++++||+|+|+++|++|||+|++++++      .|.|+|.+++|++++.++|+||||+++|||||||++|++ |+
T Consensus        18 ~~p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~   97 (424)
T 1jhn_A           18 KAPVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFL   97 (424)
T ss_dssp             CCCCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEEC
T ss_pred             ecCCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCccc
Confidence            34566899999999999999999999998763      367999999999999999999999999999999999997 99


Q ss_pred             CCCCceEEEEEEeeeceeeccCceEEecccc--ccccccCCCCCeeEEEcccccCCCCceEEEEEeecCCc-------cc
Q 017253           84 NKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN-------YP  154 (374)
Q Consensus        84 ~~~k~LVvQYeVk~q~~i~CGGaYiKLl~~~--~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~~~-------~~  154 (374)
                      +++|+||||||||||++|+|||||||||+..  +++++|+++|||+||||||+|| .++||||||||+|.+       |.
T Consensus        98 ~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~~~~d~~~f~~~TpY~IMFGPD~CG-~~~kvH~I~~~knp~~g~~~ekh~  176 (424)
T 1jhn_A           98 FDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHA  176 (424)
T ss_dssp             SSSSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECC
T ss_pred             cCCCCEEEEEEEEecccccccceEEEeecCcccCCHhHcCCCCCceEeccCCccC-CCCeEEEEEecCCCCCCchhhhcc
Confidence            9999999999999999999999999999974  7999999999999999999999 799999999998754       55


Q ss_pred             cccCC---ccccCCccceEEEEEcCCCceEEEEcCeeeccCCccCCCC--CCCCccccCCCCCCCCCCCCCCccCCCCCC
Q 017253          155 IKKEL---ECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAV  229 (374)
Q Consensus       155 ~~~~~---~~~~D~~tHlYTLii~pdntyei~IDg~~~~~gsl~~dw~--~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~  229 (374)
                      .++++   +|++|++||||||||+|||||+|+|||+++.+|||++||+  ++||++|+||+|+||+||+++++|+||+|+
T Consensus       177 ~~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~  256 (424)
T 1jhn_A          177 KRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAV  256 (424)
T ss_dssp             CCCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC-------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCC
T ss_pred             cCCcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccHHhccccCCCcccccCccccCccccccccccCCcccC
Confidence            55554   3568999999999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             CCCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCC
Q 017253          230 KPEGYDS--------------------IPKEIPDPKAKKPDNWDEDEDGLWK-------------------PPKIPNPAY  270 (374)
Q Consensus       230 KP~dWDd--------------------~p~~IpDP~a~kP~dWd~~~dG~We-------------------~p~I~NP~y  270 (374)
                      ||+|||+                    +|++|+||+|+||+|||++++|+|+                   ||||+||+|
T Consensus       257 KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~y  336 (424)
T 1jhn_A          257 KPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNY  336 (424)
T ss_dssp             CCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTC
T ss_pred             CccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccc
Confidence            9999974                    4779999999999999998887776                   477778888


Q ss_pred             CccCccCcCCCCCCCcccccCccCCCCCCCCCCCCCcCCceeEeEEEEeecCCceeceEEecCCHHHHHHHHHHhhcc-h
Q 017253          271 KGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-R  349 (374)
Q Consensus       271 kG~W~p~~I~NP~ykG~W~~~~I~NP~Y~~d~~~~~~~~i~~vG~elW~~~~g~~FDNili~~d~~~A~~~~~~t~~~-~  349 (374)
                      +|+|+||+|+||+|+|+|+||+|+||+|++|.++++|.+|++||||||||++|++|||||||+|+++|++++++||.. +
T Consensus       337 kG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~  416 (424)
T 1jhn_A          337 KGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKK  416 (424)
T ss_dssp             CCSCCCCEEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC--
T ss_pred             cCcccCCccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhh
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999999 7


Q ss_pred             hHHH
Q 017253          350 EIEK  353 (374)
Q Consensus       350 ~~E~  353 (374)
                      .+|.
T Consensus       417 ~~e~  420 (424)
T 1jhn_A          417 AADG  420 (424)
T ss_dssp             ----
T ss_pred             hhhh
Confidence            7764
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 1e-79
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 4e-34
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 1e-30
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 7e-14
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  242 bits (620), Expect = 1e-79
 Identities = 80/262 (30%), Positives = 121/262 (46%), Gaps = 39/262 (14%)

Query: 17  SEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQTHTDA 70
            E++F + FD G  S W++S  K+ +         G ++    K    P DKG+   + A
Sbjct: 8   GEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRA 67

Query: 71  RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYS 127
           +H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY+
Sbjct: 68  KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 127

Query: 128 LMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPD 177
           +MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD
Sbjct: 128 IMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 186

Query: 178 ASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSI 237
            S+ IL+D    +SG++   + + P   I        +D     +I   +          
Sbjct: 187 NSFEILVDQSIVNSGNL-EPFKMTPFSAIGLELWSMTSDIFFDNFIVCGD---------- 235

Query: 238 PKEIPDPKAKKPDNWDEDEDGL 259
                    +  D+W  D  GL
Sbjct: 236 --------RRVVDDWANDGWGL 249
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.96
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.78
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.57
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.38
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 97.46
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=7.7e-82  Score=596.21  Aligned_cols=222  Identities=33%  Similarity=0.565  Sum_probs=197.0

Q ss_pred             hccceeeeeeccCCCccCCCeEecccccCCC------CCCcEEEeccccCCCCCCcceeeccccchhhhhccCCC-CCCC
Q 017253           13 QISVSEIFFEERFDDGWRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNK   85 (374)
Q Consensus        13 ~~~~~~v~F~E~F~~~~~~rWv~S~~~k~~~------~~G~~~~~~g~~~~~~~d~GL~~~~~ak~yaIs~~l~~-~~~~   85 (374)
                      ..++++|||+|+|+++|.+|||+|++++++.      +.|+|.+.+++..+.++|+||||+++|||||||++|++ |+++
T Consensus         4 p~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~   83 (249)
T d1jhna4           4 PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFD   83 (249)
T ss_dssp             CCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSS
T ss_pred             CCCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccC
Confidence            3568999999999999999999999987653      45666666666566778999999999999999999998 9999


Q ss_pred             CCceEEEEEEeeeceeeccCceEEecccc--ccccccCCCCCeeEEEcccccCCCCceEEEEEeecCCc------ccccc
Q 017253           86 NRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKK  157 (374)
Q Consensus        86 ~k~LVvQYeVk~q~~i~CGGaYiKLl~~~--~d~~~f~~~tpY~IMFGPD~CG~~~~kvH~I~~~~~~~------~~~~~  157 (374)
                      +|+||||||||+|++++|||||||||+.+  +++++|+++|||+||||||+|| .++||||||||+|.+      +++++
T Consensus        84 ~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfIf~~~np~~~~~eek~~~~  162 (249)
T d1jhna4          84 TKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKR  162 (249)
T ss_dssp             SSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCCC
T ss_pred             CCCEEEEEEeeeccCccccceEEEeecCcccCCHhHcCCCCCceEEeCCcccC-CCCEEEEEEEcCCCCCccceeeeecC
Confidence            99999999999999999999999999864  6899999999999999999999 689999999998743      33444


Q ss_pred             C----CccccCCccceEEEEEcCCCceEEEEcCeeeccCCccCCCCCCCCccccCCCCCCCCCCCCCCccCCCCCCCCCC
Q 017253          158 E----LECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEG  233 (374)
Q Consensus       158 ~----~~~~~D~~tHlYTLii~pdntyei~IDg~~~~~gsl~~dw~~~~p~~I~Dp~d~KP~DW~d~~~I~Dp~~~KP~d  233 (374)
                      +    +.+++|++||||||||+|||||||+|||+++.+|+|. +|.+.||++|+||.++||+||+|+++|+||+++||+|
T Consensus       163 p~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le-~~~~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kped  241 (249)
T d1jhna4         163 PDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE-PFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDD  241 (249)
T ss_dssp             CSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC-TTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHH
T ss_pred             CCccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC-cccCCCcccCCCcccCCCCCccccccccCCCcCChhh
Confidence            3    3466899999999999999999999999999999985 6889999999999999999999999999999999999


Q ss_pred             CCC
Q 017253          234 YDS  236 (374)
Q Consensus       234 WDd  236 (374)
                      ||+
T Consensus       242 Wde  244 (249)
T d1jhna4         242 WAN  244 (249)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            996
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure