Citrus Sinensis ID: 017296
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 374 | 2.2.26 [Sep-21-2011] | |||||||
| Q54HW5 | 359 | Guanine nucleotide-bindin | yes | no | 0.860 | 0.896 | 0.302 | 3e-45 | |
| Q9EQ15 | 326 | Guanine nucleotide-bindin | yes | no | 0.839 | 0.963 | 0.298 | 3e-38 | |
| Q9BYB4 | 327 | Guanine nucleotide-bindin | yes | no | 0.794 | 0.908 | 0.284 | 7e-34 | |
| B6K7R8 | 365 | ASTRA-associated protein | N/A | no | 0.901 | 0.923 | 0.265 | 8e-21 | |
| A2RA56 | 440 | ASTRA-associated protein | yes | no | 0.842 | 0.715 | 0.271 | 3e-20 | |
| B8NG55 | 429 | ASTRA-associated protein | N/A | no | 0.863 | 0.752 | 0.236 | 5e-19 | |
| Q9UTR9 | 368 | ASTRA-associated protein | yes | no | 0.901 | 0.915 | 0.250 | 8e-19 | |
| B6HHJ8 | 440 | ASTRA-associated protein | yes | no | 0.820 | 0.697 | 0.252 | 3e-18 | |
| A7ESR0 | 503 | ASTRA-associated protein | N/A | no | 0.868 | 0.646 | 0.251 | 6e-16 | |
| C9STX5 | 404 | ASTRA-associated protein | N/A | no | 0.834 | 0.772 | 0.261 | 7e-16 |
| >sp|Q54HW5|GNB1L_DICDI Guanine nucleotide-binding protein subunit beta-like protein 1 homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 187/384 (48%), Gaps = 62/384 (16%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA--HG 64
PDP +LRGH+ +V V F + P +L++G+ GEL++W+ + + +S+ HS G
Sbjct: 13 PDPYYILRGHKFNVNSVLFDKVNPNLLYSGSGDGELKLWNIEEKKCISTQIAHSEGIGGG 72
Query: 65 IVSVA-----------TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHF 113
++S+ ++SQGRDG +K W I + N + ++TNS
Sbjct: 73 VLSLQWLSNDNNNENNNNNDEICGNILSQGRDGVIKIWSIIDNCTFKN-TYRLETNS--- 128
Query: 114 CKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173
LSL K C S S+
Sbjct: 129 --LSLGK-----------------------------CSSLSSNLLSISGSAIDPTSSTSQ 157
Query: 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF-------VNVLA 226
VEIWDL + +L N+ G+ M+++ Y +++ + +
Sbjct: 158 VEIWDLKNKQVINKLKPNNQQLFEKL-----GLPMSLKLYYENENNDNSNQSNDQIRLCT 212
Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286
GYE+G +L+WD+RN IPL + K+H EP+L ++ + GISG D I+ +N+++ +
Sbjct: 213 GYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYESK 272
Query: 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 346
I K L GIS IR D KI ATAGWD+R+RI+N++K + LAILKYH + ++
Sbjct: 273 QFNITKTHKLNNGGISEIKIRNDEKIYATAGWDKRIRIFNFKKQTPLAILKYHTESVYSI 332
Query: 347 SFSSDCKLMASASEDSTVALWELY 370
F+S+ ++AS S+D +ALW++Y
Sbjct: 333 DFNSN-NILASGSKDCKIALWDIY 355
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Mus musculus GN=Gnb1l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 179/372 (48%), Gaps = 58/372 (15%)
Query: 5 PPPPDPVAVLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVH 59
PPPP P VLRG +++V + F P+LF+G+ G + IW ++Q R + ++
Sbjct: 6 PPPPGPRFVLRGTQSAVNTLHFCPPSQAAGNPLLFSGSQNGLVHIW-SLQTRRIVTTLNG 64
Query: 60 SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
G++ + T P ++++SQGRD + WD+E G + S ++ +S FC+ S++
Sbjct: 65 HGGQGVIWLKTLPQG--HQLLSQGRDLRLCLWDLEEGRNTIMDS--VQLDSVGFCRGSIL 120
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
A K E ++ E S+C K + A M + +W
Sbjct: 121 VRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLG--------LWQT 172
Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
N++ R +LAGYEDGS+ +WDI
Sbjct: 173 NSSLRPL-------------------------------------LLAGYEDGSVTLWDIS 195
Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299
+ + + H EPV+ L D GISG A + + +++LD S +KK L P
Sbjct: 196 ERKV-CSQITCHEEPVMGLDFDSQKAKGISGSAGKVLAVWSLDDQQ-SLQVKKTHELTNP 253
Query: 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359
GI+ +IRPD KI ATAGWD R+R++++R LA+L +H A V+F++D L+A+ S
Sbjct: 254 GIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFAAD-GLLAAGS 312
Query: 360 EDSTVALWELYP 371
+D +++W LYP
Sbjct: 313 KDQRISIWSLYP 324
|
Mus musculus (taxid: 10090) |
| >sp|Q9BYB4|GNB1L_HUMAN Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Homo sapiens GN=GNB1L PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 170/373 (45%), Gaps = 76/373 (20%)
Query: 13 VLRGHRASVTDVCF-----HQTKPILFAGTTGGELRIWDTVQHRTVSS---------SWV 58
VLRG ++ V + F Q +P+LF+G+ G + IW R V++ +W+
Sbjct: 15 VLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVTWL 74
Query: 59 HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL 118
+ G +++SQGRD + WD+ G + S+ ++ S FC+ S+
Sbjct: 75 QTLPQG------------RQLLSQGRDLKLCLWDLAEGRSAVVDSVCLE--SVGFCRSSI 120
Query: 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178
+ A + E ++ E S+C K PK A G +
Sbjct: 121 LAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALK-------PKADAKLGMPM------- 166
Query: 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238
C RL Q C P +LAGYEDGS+++WD+
Sbjct: 167 ------CLRLWQADCSSRPL-------------------------LLAGYEDGSVVLWDV 195
Query: 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298
+ + + H EPV+ L D GISG A + + +++LD + ++ L
Sbjct: 196 SEQKV-CSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQ-ALQVRGTHELTN 253
Query: 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 358
PGI+ +IRPD KI ATAGWD R+R++++R LA+L +H A V+F++D L+A+
Sbjct: 254 PGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVAFTAD-GLLAAG 312
Query: 359 SEDSTVALWELYP 371
S+D ++LW LYP
Sbjct: 313 SKDQRISLWSLYP 325
|
Homo sapiens (taxid: 9606) |
| >sp|B6K7R8|ASA1_SCHJY ASTRA-associated protein 1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 161/388 (41%), Gaps = 51/388 (13%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
P P VLRGH +SVT + F + IL++G G + WD R H+ + I+
Sbjct: 4 PTPFFVLRGHLSSVTSLSF-VSDGILYSGDANGWMICWDLSVMRPTHIWRAHTKS--ILG 60
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
V S V + GRD V W + S+ L++ L +++ N +
Sbjct: 61 VYGCSS---EVVWTHGRDMQVARWHLNPPTGGSHIPLSL---------LHAIQQEKKNDQ 108
Query: 128 QANEPKDCYER-EVGETVDTDSLCDSKDDV-PAEGPKYM--AVAGEQLSEVEIWDLNTAE 183
Q++ G T++L + PA G + V EQL + D + ++
Sbjct: 109 QSSSSLTIVSSVHKGYFFQTNNLTFCSFAISPAAGLLVVPNTVNAEQLDVYALNDTSDSD 168
Query: 184 R---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL------ 234
R C + Q++ P G M +A+ V ++AGYE G ++
Sbjct: 169 RRDNCGKRLQHALEPKPQIEKTGAVMSVALHV-----KYNKVVLVAGYESGHVVQYIADV 223
Query: 235 ------------VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
VW + + A KVH EPVL + S AD IV + +
Sbjct: 224 DAAQKVNVYFQQVWQV------MYAEKVHKEPVLSVVFGNDNGYLYSSSADDYIVRHTIC 277
Query: 283 HSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT 342
S + + + PG +R D KI +AGWD R R+Y + + LA+LKYH T
Sbjct: 278 LSKETHTNPESMKTGHPGQQCLRVRSDDKILVSAGWDGRGRVYGAKSLAKLAVLKYHSET 337
Query: 343 CNAVSFSSDCKLMASASEDSTVALWELY 370
CN + L+A S+DS ++LW++Y
Sbjct: 338 CNCAAIQPGSNLIALGSKDSRISLWQIY 365
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Component of the ASTRA complex involved in chromatin remodeling. Schizosaccharomyces japonicus (strain yFS275 / FY16936) (taxid: 402676) |
| >sp|A2RA56|ASA1_ASPNC ASTRA-associated protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 162/391 (41%), Gaps = 76/391 (19%)
Query: 4 RPPPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA 62
R PP P +LRGH A++ + FHQ L +G G + +WD V R ++W A
Sbjct: 9 RQPPATPTYILRGHAAAIHALQIFHQNLR-LVSGDADGWIVVWDLVSKRP-RATW--KAH 64
Query: 63 HGIVSVATGPSIG---LNKVISQGRDGTVKCW----------------DIE--NGGLSSN 101
G V G S G + +V + GRD ++ W DIE + +S
Sbjct: 65 DGTVLEVKGFSFGNGAVTEVFTHGRDHKLRVWRFSLQDEESLQKVLPVDIEKTSSTAASQ 124
Query: 102 PSL--TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159
P L ++ N+ +FC S+V P A A++ + + E S+ + +
Sbjct: 125 PWLVHSLPVNALNFCAFSMVFLPPDKANTASDASEAPK----ENTSLSSVLIAVPNALNS 180
Query: 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219
G ++++ L R + P + GM MA A L
Sbjct: 181 G------------AIDLFHLPQERRICTI--------PADTEVQTGMVMA--ANLVISPS 218
Query: 220 GFVNVLAGYEDGSILVWDIR----------NPGIP-----LTAMKVHLEPVLCLSIDESC 264
G + V + YEDG ++V R + P L + H +PVL L + +
Sbjct: 219 GELYVASAYEDGRVMVHGCRGSLQEKDLTQSTKTPWKWEKLYVCRAHSQPVLSLHVSPAG 278
Query: 265 NGGISGGADQKIVLYNL------DHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318
N S AD + + + H+ I+ IN + G G IR D KI ATAGW
Sbjct: 279 NYFFSSSADAVLAKHPIPSLGSPGHAPEELPIRS-INTKHAGQQGVRIRSDGKIFATAGW 337
Query: 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
D RVR+Y+ + LA+LK+H C AV+F+
Sbjct: 338 DSRVRVYSCKTMKELAVLKWHKDGCYAVAFA 368
|
Component of the ASTRA complex involved in chromatin remodeling. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) |
| >sp|B8NG55|ASA1_ASPFN ASTRA-associated protein 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 152/381 (39%), Gaps = 58/381 (15%)
Query: 6 PPPDPVAVLRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
PP P +LRGH + + + FHQ L +G G + +WD V R V+ H A
Sbjct: 9 PPASPTYILRGHASPIHGLHIFHQNLR-LISGDADGWIIVWDLVFKRPVAVWKAHEGAIL 67
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCW----------------DI--ENGGLSSNPSL-- 104
V T + + +V + GRD + W DI +N ++ P L
Sbjct: 68 EVKGFTFSNQTVTEVYTHGRDHKLCVWRFRAQDEDLLQKTLPVDISEQNQSQATQPWLVH 127
Query: 105 TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164
++ N+ +FC S++ + EP E D S + P +
Sbjct: 128 SLPVNALNFCAFSMLFLDEEESPDTGEP---------EASDKTSTQSPGKNPPQHHSLFA 178
Query: 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224
++I+ L R + P + GM MAV + S + ++
Sbjct: 179 VPNALNSGAIDIFHLPRERRLCTI--------PADQTTQTGMVMAVTLFYSSTRELYIA- 229
Query: 225 LAGYEDGSILVWDIRNPGIP----------------LTAMKVHLEPVLCLSIDESCNGGI 268
+ YEDG ++V+ +R + + H +P L + + + +
Sbjct: 230 -SAYEDGHVMVFALRGQLTTQDFSGKASSDSWKWERVYVARAHSQPALSIDVFPAGGYFV 288
Query: 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328
S AD +V + + G K+++ + G G IR D ++ ATAGWD RVR+Y+ +
Sbjct: 289 SSSADALVVKHPVP-GFGEVGTVKKVDTKHSGQQGVRIRSDGRVFATAGWDSRVRVYSCK 347
Query: 329 KGSALAILKYHHATCNAVSFS 349
LA+LK+H C V+F+
Sbjct: 348 TLRELAVLKWHKEGCYTVAFA 368
|
Component of the ASTRA complex involved in chromatin remodeling. Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) (taxid: 332952) |
| >sp|Q9UTR9|ASA1_SCHPO ASTRA-associated protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asa1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 160/391 (40%), Gaps = 54/391 (13%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
P P VLRGH +SVT V F L++G G + W R + H+ +
Sbjct: 4 PTPFYVLRGHSSSVTSVLF-DANEYLYSGDEAGFVICWCLTSMRPKCAWRAHTKTILGMQ 62
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE--PYAN 125
+ G ++ + GRD + W I+ ++ N F LS + E Y
Sbjct: 63 IVKGGAL-----CTHGRDCRLVTWKIDFNCMTDN-----------FMSLSKLAELQNYGP 106
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
+ K + + +SL + + E++++D +
Sbjct: 107 EASSETEKSSAFISIHSNIVVNSLTFCPFSYSPQSKIVVLCNTLNFEELDVYDDESLYH- 165
Query: 186 TRLHQNSCGG------SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW--- 236
+ H+ CG P S G M+ + + +V + AGYE G ++ +
Sbjct: 166 PQTHKEDCGKRLQTRIQPEESVGKTGSVMSTSVTV--TDEKYVLLAAGYESGHVVQYICS 223
Query: 237 ---------DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS 287
D + + A K H +PVL S++ + + S GAD I L H T S
Sbjct: 224 LENVKTVTLDFKAVWKMVYAYKSHSQPVL--SVEYAGSKLFSTGADDCICL----HPTPS 277
Query: 288 CVIKKEINLERP--------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339
+ +L P G IR D+KI ATAGWD R R+Y+ + + LA+LKYH
Sbjct: 278 SIADDLGSLPHPIFRKTKHCGQQNIRIRSDNKILATAGWDGRGRVYSCQTLAPLAVLKYH 337
Query: 340 HATCNAVSFSSDCKLMASASEDSTVALWELY 370
N+++F ++A AS+D+ ++LW+LY
Sbjct: 338 SDGINSLAFHPGSNVIALASKDTRISLWKLY 368
|
Component of the ASTRA complex probably involved in chromatin remodeling. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|B6HHJ8|ASA1_PENCW ASTRA-associated protein 1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/392 (25%), Positives = 159/392 (40%), Gaps = 85/392 (21%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIV 66
P PV +LRGH + V + + L +G G + +WD V R V++ W A G V
Sbjct: 11 PATPVYILRGHASPVHALHIYSQNLRLVSGDANGWIVVWDLVTKRPVTA-W--KAHEGAV 67
Query: 67 SVATGPSIG--LNKVISQGRDGTVKCWDIE-------------------NGGLSSNPSL- 104
A G +G ++ + GRD + W + G + P L
Sbjct: 68 LEARGFDVGSGATEIYTHGRDHKLCVWKLRPEDETFLNKTLPVDATESAQPGSKTQPWLL 127
Query: 105 -TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163
++ N+ +FC S+ + N + + + G +T P
Sbjct: 128 HSLPVNALNFCAFSMA---FVNP----DGLPAFPSQSGRPENTLFAV----------PNA 170
Query: 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223
+ G V+I+ L + R + + P+ S GM MAV ++ G +
Sbjct: 171 LDSGG-----VDIFHLPSERRISTI--------PSEQSPKTGMLMAVNLFI--SPSGDLY 215
Query: 224 VLAGYEDGSILVWDIR---------------NP--GIPLTAMKVHLEPVLCLSIDESCNG 266
V + YEDG ++V+ R NP L A + H +PVL L + S
Sbjct: 216 VASAYEDGHVMVFVHRGALKSASFEREYISNNPLKWDKLYAGRPHSQPVLSLDVAPSHGY 275
Query: 267 GISGGADQKIVLYNLDHSTGSCVIK----------KEINLERPGISGTSIRPDSKIAATA 316
IS AD IV + + ++ + I K +N + G G IR D K+ ATA
Sbjct: 276 FISSSADALIVKHPIPNTGSAGYIPTAGYKEESPLKIVNTKHSGQQGLRIRSDEKVFATA 335
Query: 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSF 348
GWD R+R+Y+ + LA+LK+H C +++F
Sbjct: 336 GWDSRIRVYSGKTMKELAVLKWHKDGCYSIAF 367
|
Component of the ASTRA complex involved in chromatin remodeling. Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485) |
| >sp|A7ESR0|ASA1_SCLS1 ASTRA-associated protein 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 161/398 (40%), Gaps = 73/398 (18%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MS P P P +LRGH + F + L G G + +W R V+ W
Sbjct: 1 MSIPPGAPQPSYILRGHATPIHVAKFIRGNTRLITGDAEGWVVLWSLETRRGVAV-W--- 56
Query: 61 AAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDI---ENGGLSS------------NPSL 104
AHG V + G + +++ G+D + W + E +S P +
Sbjct: 57 RAHGGVLLGVGEWGERGEGIVTHGKDNKLIIWKLPPSEEDSMSKILPVDTVSEERRKPWI 116
Query: 105 --TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162
+ N+ +FC ++ + N P + ER KDD G +
Sbjct: 117 LHILDVNTMNFCAFAMC----PIVTEVN-PAEHEER-------------GKDDEAQLGME 158
Query: 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGR---GMCMAVQAYLPSKSQ 219
+ + EQL + + ++ T+E H + N S G GM M++ + ++
Sbjct: 159 WEGESEEQLL-IAVPNILTSESIDIFHIPTLHRIHNIPSPGPDKPGMIMSLSLFFHPITK 217
Query: 220 GFVNVLAGYEDGSILVWDIRNPGI----------PLTAMKVHLEPVLCLSIDESCNGG-- 267
+ V++GYEDGS+ V+ + +P + K H++P+L LS+D +
Sbjct: 218 -CLTVISGYEDGSVSVFALSSPSTRTPSSPEQWNTIYQSKSHIQPILSLSVDPGRDRKFF 276
Query: 268 ISGGADQKIVLYNLDHSTGSCVIK----------------KEINLERPGISGTSIRPDSK 311
I+ GAD +I+ Y + +T K + G G IR D K
Sbjct: 277 ITSGADDRIIKYLIPATTTPFSPSKSTSKSTTISSTKYEPKILKSAHAGQQGIEIRNDGK 336
Query: 312 IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
IA TAGWD R R+Y K LA+LK+H C AV+ +
Sbjct: 337 IAVTAGWDGRARVYEVTKMRELAVLKWHKEGCFAVAVA 374
|
Component of the ASTRA complex involved in chromatin remodeling. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) |
| >sp|C9STX5|ASA1_VERA1 ASTRA-associated protein 1 OS=Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) GN=asa1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 149/363 (41%), Gaps = 51/363 (14%)
Query: 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG 64
P P P +LRGH+A V + F L +G G + +WD R + H A
Sbjct: 26 PETPHPRTILRGHKAQVHALAFVGNNDRLASGDAEGYVALWDLTIMRPTAVWQPHDNA-- 83
Query: 65 IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124
I+ + G +++I+ GRD + W + S +L+ K L EP
Sbjct: 84 ILGIQ---GWGADRIITHGRDHKLAVWKLAT---SDEANLSKK------LPLDDTSEP-- 129
Query: 125 NAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK-------YMAVAGEQLSE-VEI 176
P+ + V+T + C VP + P +AV SE ++I
Sbjct: 130 ------RPQPWLLHLID--VNTMNFCAFAACVPTDPPPAGDDPELLLAVPNTLASESIDI 181
Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
+ L T TR H G GM MA+ A +P + +LAGYE+G
Sbjct: 182 YHLPTQ---TRRHTVKSPGQ-------NGMVMAL-ALVPQGDS--LTLLAGYENGVTTAM 228
Query: 237 DIRNP-GIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK-- 291
+ G T + H +PVL L + ++ AD + + + G V++
Sbjct: 229 HLSAASGTWNTTYRTQPHSQPVLSLDVSPDGLSFVTSSADAVVARHPVPPPAGMEVLEQP 288
Query: 292 -KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 350
K +N + G R D ++ AT GWD VR+Y+ + +A+LK+H C AV+F+S
Sbjct: 289 LKVVNTKHSGQQSLRFRDDGRVFATGGWDAMVRVYSGKTMKEVAVLKWHEVGCYAVAFAS 348
Query: 351 DCK 353
K
Sbjct: 349 ALK 351
|
Component of the ASTRA complex involved in chromatin remodeling. Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) (taxid: 526221) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 374 | ||||||
| 359492190 | 382 | PREDICTED: guanine nucleotide-binding pr | 0.991 | 0.971 | 0.710 | 1e-157 | |
| 224104761 | 387 | predicted protein [Populus trichocarpa] | 0.994 | 0.961 | 0.702 | 1e-155 | |
| 255562629 | 441 | conserved hypothetical protein [Ricinus | 0.981 | 0.832 | 0.680 | 1e-146 | |
| 297799000 | 386 | EMB2757 [Arabidopsis lyrata subsp. lyrat | 0.994 | 0.963 | 0.648 | 1e-144 | |
| 42567255 | 386 | transducin/WD40 domain-containing protei | 0.994 | 0.963 | 0.648 | 1e-142 | |
| 356517988 | 387 | PREDICTED: ASTRA-associated protein 1-li | 0.991 | 0.958 | 0.634 | 1e-141 | |
| 323511860 | 375 | decreased size exclusion limit 1 [Nicoti | 0.986 | 0.984 | 0.671 | 1e-140 | |
| 449449559 | 383 | PREDICTED: guanine nucleotide-binding pr | 0.989 | 0.966 | 0.644 | 1e-140 | |
| 357466903 | 364 | Guanine nucleotide-binding protein subun | 0.967 | 0.994 | 0.650 | 1e-138 | |
| 242091842 | 402 | hypothetical protein SORBIDRAFT_10g00205 | 0.965 | 0.898 | 0.539 | 1e-118 |
| >gi|359492190|ref|XP_002278969.2| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Vitis vinifera] gi|302142603|emb|CBI19806.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/383 (71%), Positives = 318/383 (83%), Gaps = 12/383 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHRASVTDVCFH + ILF G++ GELRIWDTVQHRTVSS+WVHS
Sbjct: 1 MSKRPPP-DPVAVLRGHRASVTDVCFHPSNSILFTGSSDGELRIWDTVQHRTVSSAWVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHG+V VA P IG NK++SQGRDGTVK WDIE GGLS +PSLTIKTN+YHFCKLSL+K
Sbjct: 60 AAHGVVCVAASPLIGDNKLVSQGRDGTVKYWDIEEGGLSRSPSLTIKTNAYHFCKLSLMK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSK-----------DDVPAEGPKYMAVAGE 169
+P A A+QA PK ++ +V +TVD + L DS D AEGPKY+A+AGE
Sbjct: 120 KPCACARQAEGPKHYHDMDVKDTVDAEMLNDSSGKAQESLTECSDAAHAEGPKYVAIAGE 179
Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
Q SEVEIWDLNTAER +L Q GGS N+ +K RGMCMAVQA+LPS+SQGF+N+L+GYE
Sbjct: 180 QSSEVEIWDLNTAERIAQLPQKCLGGSSNYCTKSRGMCMAVQAFLPSESQGFLNILSGYE 239
Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 289
DG+++ WDIRNPGIP+T++K HLEP+L + +D SC+GGISG AD KIV++ LD+ GSCV
Sbjct: 240 DGTMVWWDIRNPGIPITSVKFHLEPILSICLDGSCSGGISGAADNKIVIFGLDNPMGSCV 299
Query: 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
+KKEI+LERPGISGTS+R D KIAATAGWD R+RI+NYRKGSALAILKYH ATCNAVSFS
Sbjct: 300 VKKEISLERPGISGTSVRSDGKIAATAGWDHRIRIFNYRKGSALAILKYHRATCNAVSFS 359
Query: 350 SDCKLMASASEDSTVALWELYPP 372
DCKLMAS+SEDSTVALWELYPP
Sbjct: 360 PDCKLMASSSEDSTVALWELYPP 382
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104761|ref|XP_002313556.1| predicted protein [Populus trichocarpa] gi|222849964|gb|EEE87511.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 272/387 (70%), Positives = 315/387 (81%), Gaps = 15/387 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRP P DPVAVLRGHRASV D FH +KP+LF G+T GELRIWDTVQHRTVSSS VHS
Sbjct: 1 MSKRPAP-DPVAVLRGHRASVMDASFHPSKPLLFTGSTDGELRIWDTVQHRTVSSSRVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+SVA P IG NKVISQGRDGTVKCWDI+NGGLS PSLTIKTN+YHFCKLSLVK
Sbjct: 60 AAHGIISVAASPLIGDNKVISQGRDGTVKCWDIDNGGLSREPSLTIKTNAYHFCKLSLVK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSK--------------DDVPAEGPKYMAV 166
+P ++ +Q P +E++ ETVDT+SL + +D+ A+G KY+AV
Sbjct: 120 KPNSSVRQGEGPNYKHEKDDTETVDTNSLGNKGINYEEDPVECSNPLEDLHADGSKYIAV 179
Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
AGEQ SEVEIWDLNTAER RL Q+ GGS N S+ RGMCMAVQA+LPS+SQGF+ +L
Sbjct: 180 AGEQSSEVEIWDLNTAERLARLPQSCIGGSSNISTNKRGMCMAVQAFLPSESQGFLYILV 239
Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286
GYEDGS+L+WD+RNPG + ++K H EPVL L +D C+GGISG AD KI LY+LD S G
Sbjct: 240 GYEDGSMLLWDMRNPGAFVNSVKFHTEPVLSLCVDGLCSGGISGAADDKIALYSLDVSVG 299
Query: 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 346
SCV+KKEI+LERPG+SGTSIRPDSKIAATAGWD RVRIYNYRKG+ALAILKYHHATCNAV
Sbjct: 300 SCVMKKEISLERPGVSGTSIRPDSKIAATAGWDHRVRIYNYRKGNALAILKYHHATCNAV 359
Query: 347 SFSSDCKLMASASEDSTVALWELYPPH 373
++S+DCKLMASASED+T+ALWELYPP
Sbjct: 360 TYSTDCKLMASASEDTTIALWELYPPQ 386
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562629|ref|XP_002522320.1| conserved hypothetical protein [Ricinus communis] gi|223538398|gb|EEF40004.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/382 (68%), Positives = 303/382 (79%), Gaps = 15/382 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
M KRPPPPDP+ VLRGHRASVTD CFH +KPILF G+ GELRIWDTVQHRT+SS+WVHS
Sbjct: 1 MIKRPPPPDPITVLRGHRASVTDACFHPSKPILFTGSADGELRIWDTVQHRTISSAWVHS 60
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+S+A+ G +KVISQG+DGTVK WDI+ GGLS P +TI+TNSYHFCKLSLVK
Sbjct: 61 AAHGIISIASCNLNGNDKVISQGKDGTVKLWDIQEGGLSRVPVVTIRTNSYHFCKLSLVK 120
Query: 121 EPYANAKQANEPKDCYEREVGETVDTD-------------SLC--DSKDDVPAEGPKYMA 165
+P P +E E ETVDT+ S C DS++D + K +A
Sbjct: 121 KPGDKVVHDKGPNHQHEIEALETVDTNVSYDRENRHNENSSKCSSDSEEDKHIDVLKCVA 180
Query: 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL 225
+AGEQ SEVEIWDLNTAER +RL QN GGS + +++ RGMCMAVQA+LPS+SQGF+N+L
Sbjct: 181 IAGEQSSEVEIWDLNTAERISRLAQNCSGGSSSITTQKRGMCMAVQAFLPSESQGFLNLL 240
Query: 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285
AGYEDGS+L WD+R+PG+PLT++K H EPVL L ID C GGISG AD KIVL++LD+
Sbjct: 241 AGYEDGSMLWWDMRSPGVPLTSVKFHTEPVLSLCIDGWCTGGISGAADDKIVLFSLDNCL 300
Query: 286 GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA 345
GSCVIKKEI LERPGISGTSIR D KIAA AGWD RVRIYNYRKG+ALAILKYHHATCNA
Sbjct: 301 GSCVIKKEITLERPGISGTSIRADGKIAAAAGWDHRVRIYNYRKGNALAILKYHHATCNA 360
Query: 346 VSFSSDCKLMASASEDSTVALW 367
VS+SSDCKL+ASASED+TVALW
Sbjct: 361 VSYSSDCKLLASASEDTTVALW 382
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799000|ref|XP_002867384.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] gi|297313220|gb|EFH43643.1| EMB2757 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/384 (64%), Positives = 307/384 (79%), Gaps = 12/384 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHR SV DV FH +KP+LF G+ GELRIWDT+QHR VSS+W HS
Sbjct: 1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKPLLFTGSADGELRIWDTIQHRAVSSAWAHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A+G+++VA P +G NK+ISQGRDGTVKCWDIE+GGLS +P L ++T++YHFCK SLVK
Sbjct: 60 RANGVLAVAASPWLGENKIISQGRDGTVKCWDIEDGGLSRDPLLILETSAYHFCKFSLVK 119
Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSKDDVP----------AEGPKYMAVAGE 169
+P + ++A + ++C E++ G+T DS+ V AEG ++AV GE
Sbjct: 120 KPKTSLQEAVSHLQNCDEQDDGDTRSVQLGDDSERSVEDSGLLQDGDHAEGTTFVAVVGE 179
Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
Q +EVEIWD+NT ++ +L Q+S SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDINTGDKIIQLPQSSLDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239
Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 289
DGS+L+WDIRN IPLT++K H EPVL LSI SC+GGISGGAD KIV+YNL+HS GSC
Sbjct: 240 DGSMLLWDIRNAKIPLTSVKFHSEPVLSLSIASSCDGGISGGADDKIVMYNLNHSAGSCT 299
Query: 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
++KEI LERPG+SGTSIRPD KIAATAGWD R+R+YNYRKG+ALAILKYH ATCNAVS+S
Sbjct: 300 MRKEITLERPGVSGTSIRPDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYS 359
Query: 350 SDCKLMASASEDSTVALWELYPPH 373
DC+LMASASED+TVALW+LYPPH
Sbjct: 360 PDCELMASASEDATVALWKLYPPH 383
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567255|ref|NP_194715.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|75674124|dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gi|332660286|gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/384 (64%), Positives = 305/384 (79%), Gaps = 12/384 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+ GELRIWDT+QHR VSS+W HS
Sbjct: 1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A+G+++VA P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119
Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDS----------KDDVPAEGPKYMAVAGE 169
+P + ++A + + C E++ G+T + DS +D AEG ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179
Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
Q +EVEIWDLNT ++ +L Q+S SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239
Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 289
DGSIL+WDIRN IPLT++K H EPVL LS+ SC+GGISGGAD KIV+YNL+HSTGSC
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCT 299
Query: 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
I+KEI LERPG+SGTSIR D KIAATAGWD R+R+YNYRKG+ALAILKYH ATCNAVS+S
Sbjct: 300 IRKEITLERPGVSGTSIRVDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYS 359
Query: 350 SDCKLMASASEDSTVALWELYPPH 373
DC+LMASASED+TVALW+LYPPH
Sbjct: 360 PDCELMASASEDATVALWKLYPPH 383
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517988|ref|XP_003527666.1| PREDICTED: ASTRA-associated protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 245/386 (63%), Positives = 306/386 (79%), Gaps = 15/386 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MS+RPPP DPVAVLRGHRASVTD+ FH +KPILF+G+ GE+RIWDT+QHRTVSS+W+HS
Sbjct: 1 MSRRPPP-DPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGIV+VA S+G NK +SQGRDGTVK W++ + GLS P LTIKTN+YHFCK S+VK
Sbjct: 60 AAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA--------------EGPKYMAV 166
+ +K+ +D Y E+G D + L D +++ EG +Y+A+
Sbjct: 120 KHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVAL 179
Query: 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226
+GE+ SEVEIWDL +AE+ +L ++ S + +KGRGMCMA+Q +LPS+SQGF+NVLA
Sbjct: 180 SGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGRGMCMALQLFLPSESQGFLNVLA 239
Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286
GYEDGS+L WD+RNPG+P+T++K H EPVL + D SC GGISG AD KIV+Y+LDHS+G
Sbjct: 240 GYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSVCNDGSCKGGISGAADDKIVMYSLDHSSG 299
Query: 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 346
+CV+KKEI+L+RPGISGTSIRPD KIAATAGWD R+RIYNYRKG+ALAILKYHH TCNAV
Sbjct: 300 TCVVKKEISLDRPGISGTSIRPDGKIAATAGWDHRLRIYNYRKGNALAILKYHHGTCNAV 359
Query: 347 SFSSDCKLMASASEDSTVALWELYPP 372
++SSDCKLMASASED+TV LWELYPP
Sbjct: 360 TYSSDCKLMASASEDTTVGLWELYPP 385
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|323511860|gb|ADX87418.1| decreased size exclusion limit 1 [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/378 (67%), Positives = 296/378 (78%), Gaps = 9/378 (2%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRP P DPV+VLRGHRASV D+CFH + ILF+G+T GELRIW+TVQ+RTVSS+WVHS
Sbjct: 1 MSKRPAP-DPVSVLRGHRASVADICFHPSNSILFSGSTDGELRIWNTVQYRTVSSAWVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+ VA P +G NKVISQGRDGTVKCWD GGLS P LTIKTNSYHFCKLS+ K
Sbjct: 60 AAHGIICVAASPVLGDNKVISQGRDGTVKCWDFGGGGLSRTPLLTIKTNSYHFCKLSIAK 119
Query: 121 EPYANAK----QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176
P K + NE D +RE TDS+ K EGPKY+A+AGEQ S VEI
Sbjct: 120 SPSEAMKIDDLEVNEIVDGMQREEQGDQPTDSI-KFKGKELIEGPKYVAIAGEQASVVEI 178
Query: 177 WDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235
WD+NTAER +L +S GSP N + RGMCMAVQA+LPS+SQG ++++AGYEDGSI
Sbjct: 179 WDVNTAERIAQLPHSS--GSPSNQTPNQRGMCMAVQAFLPSESQGLLSIMAGYEDGSIAW 236
Query: 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295
WD+RN G+PLT++K H EPVL L ID SC GG+SG AD+KI+++ LDHS GSC+I+KEI
Sbjct: 237 WDLRNLGVPLTSVKFHSEPVLSLCIDGSCKGGLSGAADEKILMFALDHSMGSCLIRKEIV 296
Query: 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM 355
LERPGI+GTSIRPD KIAATAGWD RVRIYNYRKG LAILKYH+ATCN VSFS+D KL+
Sbjct: 297 LERPGIAGTSIRPDGKIAATAGWDHRVRIYNYRKGKPLAILKYHNATCNTVSFSADSKLL 356
Query: 356 ASASEDSTVALWELYPPH 373
ASASED+TVALWELY P
Sbjct: 357 ASASEDTTVALWELYLPR 374
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449559|ref|XP_004142532.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] gi|449511779|ref|XP_004164051.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 247/383 (64%), Positives = 299/383 (78%), Gaps = 13/383 (3%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHRASV DV FH ++P+LF+G+ GELRIWDT Q+RTVSS+WVHS
Sbjct: 1 MSKRPPP-DPVAVLRGHRASVMDVSFHPSEPLLFSGSADGELRIWDTAQNRTVSSAWVHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+SVA SIG N+V+SQGRDGTVKCWDI++ LS P+++IKTN+YHFCKLSLVK
Sbjct: 60 AAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRTLSRVPTVSIKTNAYHFCKLSLVK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV-----------PAEGPKYMAVAGE 169
+P ++ N+ +C + V+ L S D +G KY+AV+GE
Sbjct: 120 QP-SDFSSHNDGPNCINDRDEKPVEATILGCSGDKAQGISTEHSYRSEVDGLKYVAVSGE 178
Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
Q SEVEIWDLN ER RL NS G PN S+K RG+CMAVQA+LPSKSQGF+NVL+GYE
Sbjct: 179 QSSEVEIWDLNAGERLLRLPPNSEGDCPNISTKDRGLCMAVQAFLPSKSQGFLNVLSGYE 238
Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 289
DGS+L WD+RNP +PL ++K H+EPVL + +D SC+G ISG AD+K+V+++LDHSTG+C+
Sbjct: 239 DGSMLWWDLRNPRVPLASVKCHVEPVLSICVDGSCHGAISGAADEKVVMFSLDHSTGTCL 298
Query: 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
+K+EI LERPGI+ SIR D KI ATAGWD RVRIYNYRKG+ LAILKYH A CNAVS+S
Sbjct: 299 VKREITLERPGIAKVSIRSDDKIVATAGWDHRVRIYNYRKGNPLAILKYHQALCNAVSYS 358
Query: 350 SDCKLMASASEDSTVALWELYPP 372
DCKLMASASED TVALWELYPP
Sbjct: 359 EDCKLMASASEDRTVALWELYPP 381
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466903|ref|XP_003603736.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] gi|355492784|gb|AES73987.1| Guanine nucleotide-binding protein subunit beta-like protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/372 (65%), Positives = 295/372 (79%), Gaps = 10/372 (2%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKR P DPVAVLRGHRASVTD+CFH +KPILF+G+ GELRIWDT + +T+SS+W+HS
Sbjct: 1 MSKRAAP-DPVAVLRGHRASVTDICFHPSKPILFSGSADGELRIWDTFRRQTLSSAWLHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
AAHGI+++A+ S+G NK +SQGRDGTVK WD ++ GLS PS+TIKTNSYHFCK SL K
Sbjct: 60 AAHGILALASSSSLGTNKFVSQGRDGTVKVWDFDDTGLSRIPSVTIKTNSYHFCKFSLAK 119
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
+K KDC E E V T+ C +EG Y+A++GE SEVEIWDL
Sbjct: 120 NQSTGSKAGEASKDCLETE---EVHTNQSCSES----SEGLSYVALSGENSSEVEIWDLK 172
Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
+AER RL + S + SSKG MCMA+Q +PS+SQGF+NV+AGYEDG++L WD+RN
Sbjct: 173 SAERFARLPSSIGSNSSSVSSKG--MCMALQLCVPSESQGFLNVMAGYEDGTMLWWDVRN 230
Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300
PG+P++++K H EPVL + ID SC GGISG AD++IV+Y+LDHS+G+CV+ KEI LERPG
Sbjct: 231 PGVPVSSVKFHSEPVLSIGIDGSCKGGISGAADERIVMYSLDHSSGTCVVNKEITLERPG 290
Query: 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 360
ISGTSIRPD KIAATAGWD R+RIYNYRKG+ALA+LKYHHATCNAV+FSSDCKLMASAS
Sbjct: 291 ISGTSIRPDGKIAATAGWDHRIRIYNYRKGNALAVLKYHHATCNAVNFSSDCKLMASASA 350
Query: 361 DSTVALWELYPP 372
D+TVALWELYPP
Sbjct: 351 DTTVALWELYPP 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242091842|ref|XP_002436411.1| hypothetical protein SORBIDRAFT_10g002050 [Sorghum bicolor] gi|241914634|gb|EER87778.1| hypothetical protein SORBIDRAFT_10g002050 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/376 (53%), Positives = 267/376 (71%), Gaps = 15/376 (3%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
DPVAVLRGHRA+V D CFH + P+LF+G GELR WDT HRT SS W H+ + G+ SV
Sbjct: 14 DPVAVLRGHRAAVNDACFHPSLPLLFSGAADGELRAWDTASHRTASSVWAHAGSAGVYSV 73
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A G +G NK+ISQGRDGT KCW IE GLS P T+KT++YHFCK+SLVK +A +
Sbjct: 74 AAGAGLG-NKIISQGRDGTCKCWVIEEAGLSRKPLFTVKTSTYHFCKMSLVKSSLTHATK 132
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK------------YMAVAGEQLSEVEI 176
+ + E ++ C + PA P+ +A+AGE+ S+VE+
Sbjct: 133 SGSTCSASDVEPKRLSSENTECHGVN--PAVAPQEHDQCTTSNGHNMLAIAGEESSQVEL 190
Query: 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236
WD+ +A + L Q + N +K +G+CMAVQA++P +S G+VN+L+ YEDGS L W
Sbjct: 191 WDIASARKIVTLPQTCSTDTANHPTKKKGLCMAVQAFIPHESAGYVNILSSYEDGSTLWW 250
Query: 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 296
D+R PG+PL+++K H E L ++ID CNGGISGGAD K+V++ LDH G+ +++KEI L
Sbjct: 251 DVRKPGLPLSSVKYHSESALSIAIDGFCNGGISGGADDKVVMFTLDHPKGAFILRKEIEL 310
Query: 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 356
ERPGI+GT+IRPD+KIAATAGWD R+R+YNY KG+ALA+LKYH A+CNAV+FSSDCKLMA
Sbjct: 311 ERPGIAGTAIRPDNKIAATAGWDHRIRVYNYNKGNALAVLKYHSASCNAVTFSSDCKLMA 370
Query: 357 SASEDSTVALWELYPP 372
S S D+TVALW+LYPP
Sbjct: 371 SCSADTTVALWDLYPP 386
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 374 | ||||||
| TAIR|locus:2123869 | 386 | EMB2757 "AT4G29860" [Arabidops | 0.994 | 0.963 | 0.648 | 1.8e-133 | |
| DICTYBASE|DDB_G0289181 | 359 | gnb1l "guanine nucleotide-bind | 0.516 | 0.537 | 0.373 | 2.9e-48 | |
| ZFIN|ZDB-GENE-050320-77 | 323 | gnb1l "guanine nucleotide bind | 0.430 | 0.498 | 0.352 | 1.2e-39 | |
| UNIPROTKB|Q9BYB4 | 327 | GNB1L "Guanine nucleotide-bind | 0.614 | 0.703 | 0.334 | 1.3e-29 | |
| UNIPROTKB|F1NF00 | 328 | GNB1L "Uncharacterized protein | 0.534 | 0.609 | 0.369 | 4.4e-29 | |
| MGI|MGI:1338057 | 326 | Gnb1l "guanine nucleotide bind | 0.582 | 0.668 | 0.336 | 1.9e-28 | |
| UNIPROTKB|F1MBU4 | 321 | GNB1L "Uncharacterized protein | 0.585 | 0.682 | 0.345 | 1.9e-28 | |
| UNIPROTKB|F1RK57 | 293 | GNB1L "Uncharacterized protein | 0.553 | 0.706 | 0.336 | 3.1e-28 | |
| RGD|1594165 | 326 | Gnb1l "guanine nucleotide bind | 0.588 | 0.674 | 0.324 | 8.2e-28 | |
| UNIPROTKB|A4RJA0 | 469 | asa1 "ASTRA-associated protein | 0.157 | 0.125 | 0.474 | 9.7e-19 |
| TAIR|locus:2123869 EMB2757 "AT4G29860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
Identities = 249/384 (64%), Positives = 305/384 (79%)
Query: 1 MSKRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60
MSKRPPP DPVAVLRGHR SV DV FH +K +LF G+ GELRIWDT+QHR VSS+W HS
Sbjct: 1 MSKRPPP-DPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHS 59
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A+G+++VA P +G +K+ISQGRDGTVKCWDIE+GGLS +P L ++T +YHFCK SLVK
Sbjct: 60 RANGVLAVAASPWLGEDKIISQGRDGTVKCWDIEDGGLSRDPLLILETCAYHFCKFSLVK 119
Query: 121 EPYANAKQA-NEPKDCYEREVGETVDTDSLCDSK----------DDVPAEGPKYMAVAGE 169
+P + ++A + + C E++ G+T + DS+ D AEG ++AV GE
Sbjct: 120 KPKNSLQEAESHSRGCDEQDGGDTCNVQIADDSERSEEDSGLLQDKDHAEGTTFVAVVGE 179
Query: 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE 229
Q +EVEIWDLNT ++ +L Q+S SPN S+KGRGMCMAVQ + P +SQGF++VLAGYE
Sbjct: 180 QPTEVEIWDLNTGDKIIQLPQSSPDESPNASTKGRGMCMAVQLFCPPESQGFLHVLAGYE 239
Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV 289
DGSIL+WDIRN IPLT++K H EPVL LS+ SC+GGISGGAD KIV+YNL+HSTGSC
Sbjct: 240 DGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNHSTGSCT 299
Query: 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349
I+KEI LERPG+SGTSIR D KIAATAGWD R+R+YNYRKG+ALAILKYH ATCNAVS+S
Sbjct: 300 IRKEITLERPGVSGTSIRVDGKIAATAGWDHRIRVYNYRKGNALAILKYHRATCNAVSYS 359
Query: 350 SDCKLMASASEDSTVALWELYPPH 373
DC+LMASASED+TVALW+LYPPH
Sbjct: 360 PDCELMASASEDATVALWKLYPPH 383
|
|
| DICTYBASE|DDB_G0289181 gnb1l "guanine nucleotide-binding protein subunit beta-like protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 77/206 (37%), Positives = 122/206 (59%)
Query: 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK-------SQGFVNV 224
S+VEIWDL + +L N+ K G+ M+++ Y ++ S + +
Sbjct: 156 SQVEIWDLKNKQVINKLKPNN----QQLFEK-LGLPMSLKLYYENENNDNSNQSNDQIRL 210
Query: 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
GYE+G +L+WD+RN IPL + K+H EP+L ++ + GISG D I+ +N+++
Sbjct: 211 CTGYENGELLIWDLRNTSIPLVSSKLHNEPILSFALSNNSTKGISGSGDTNIIEFNINYE 270
Query: 285 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 344
+ I K L GIS IR D KI ATAGWD+R+RI+N++K + LAILKYH +
Sbjct: 271 SKQFNITKTHKLNNGGISEIKIRNDEKIYATAGWDKRIRIFNFKKQTPLAILKYHTESVY 330
Query: 345 AVSFSSDCKLMASASEDSTVALWELY 370
++ F+S+ ++AS S+D +ALW++Y
Sbjct: 331 SIDFNSN-NILASGSKDCKIALWDIY 355
|
|
| ZFIN|ZDB-GENE-050320-77 gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 60/170 (35%), Positives = 101/170 (59%)
Query: 205 GMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC 264
GM M+++ + G V + AGYEDGS+++WD+ + P + +KVH EPV+ L +D
Sbjct: 156 GMLMSMKMW--QADSGPV-LCAGYEDGSVVLWDVSHRR-PFSLLKVHPEPVMSLDVDVCR 211
Query: 265 NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324
GISG ++ + + LD+ S + I + PG+S IR D KI A+AGWD +R+
Sbjct: 212 QKGISGSSENILQSWRLDNQQ-SLQMHDSIQMTNPGVSQLRIRADGKILASAGWDNNIRV 270
Query: 325 YNYRKGSALAILKYHHATCNAVSFSSDC----KLMASASEDSTVALWELY 370
+ ++K LA+L++H N+V+FS +L+A+ S+D +++W +Y
Sbjct: 271 FGWKKLKPLAVLQHHTDMVNSVAFSDHQDPTQRLLAAGSKDQRISVWSIY 320
|
|
| UNIPROTKB|Q9BYB4 GNB1L "Guanine nucleotide-binding protein subunit beta-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 85/254 (33%), Positives = 139/254 (54%)
Query: 128 QANEPKDC-YEREVGETVDTDSLC-DS----KDDVPAEG-PKY-MAVAGEQLSEVEIWDL 179
Q + K C ++ G + DS+C +S + + A G P++ +AV G EV+I ++
Sbjct: 86 QGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRSSILAGGQPRWTLAVPGRGSDEVQILEM 145
Query: 180 NTAERCTRLHQNSCGGSPNFSSK-GRGMCMAV-QAYLPSKSQGFVNVLAGYEDGSILVWD 237
+ + C P +K G MC+ + QA S+ +LAGYEDGS+++WD
Sbjct: 146 PSKT-------SVCALKPKADAKLGMPMCLRLWQADCSSRPL----LLAGYEDGSVVLWD 194
Query: 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297
+ + + + H EPV+ L D GISG A + + +++LD + ++ L
Sbjct: 195 VSEQKV-CSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQQ-ALQVRGTHELT 252
Query: 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357
PGI+ +IRPD KI ATAGWD R+R++++R LA+L +H A V+F++D L+A+
Sbjct: 253 NPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQCVAFTAD-GLLAA 311
Query: 358 ASEDSTVALWELYP 371
S+D ++LW LYP
Sbjct: 312 GSKDQRISLWSLYP 325
|
|
| UNIPROTKB|F1NF00 GNB1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 81/219 (36%), Positives = 129/219 (58%)
Query: 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS- 216
AEG MA A + L EV++ +L + + C P +K GM M ++ + S
Sbjct: 120 AEGRWLMATAAKALEEVQVLELPSKT-------SVCTLKPEVGAK-LGMPMCLKLWQGSC 171
Query: 217 KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKI 276
SQ ++LAGYEDGS+L+W++ + G L+ + H EPV+ L D GISG +++ +
Sbjct: 172 GSQP--SLLAGYEDGSVLLWNL-STGKVLSQLICHQEPVMSLDFDSEKAKGISGSSEKVL 228
Query: 277 VLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL 336
+++L+ + ++K L GIS +IRPD KI ATAGWD R+RI+ ++K LA+L
Sbjct: 229 SIWSLNEQQ-NLQVQKTHRLVNAGISDITIRPDKKILATAGWDHRIRIFGWKKLKPLAVL 287
Query: 337 KYHHATCNAVSFS-----SDCKLMASASEDSTVALWELY 370
YH AT ++VSFS SD +L+A+ ++D +++W +Y
Sbjct: 288 DYHTATVHSVSFSDHKSPSD-RLLAAGAKDHRISIWSIY 325
|
|
| MGI|MGI:1338057 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 78/232 (33%), Positives = 128/232 (55%)
Query: 142 ETVDTDSLCDSKDDVPAEGPK--YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF 199
++V DS+ + + G + +AV G+ EV+I ++ + + C P
Sbjct: 105 DSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSKT-------SVCTLKPEA 157
Query: 200 SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS 259
++ GM M + + + S + +LAGYEDGS+ +WDI + + + H EPV+ L
Sbjct: 158 DARP-GMPMCLGLWQTNSSLRPL-LLAGYEDGSVTLWDISERKV-CSQITCHEEPVMGLD 214
Query: 260 IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 319
D GISG A + + +++LD S +KK L PGI+ +IRPD KI ATAGWD
Sbjct: 215 FDSQKAKGISGSAGKVLAVWSLDDQQ-SLQVKKTHELTNPGIAEVTIRPDHKILATAGWD 273
Query: 320 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371
R+R++++R LA+L +H A V+F++D L+A+ S+D +++W LYP
Sbjct: 274 HRIRVFHWRTMKPLAVLAFHSAPVYCVAFAAD-GLLAAGSKDQRISIWSLYP 324
|
|
| UNIPROTKB|F1MBU4 GNB1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 82/237 (34%), Positives = 134/237 (56%)
Query: 140 VGETVDTDSLCDSKDDVPAEGPK--YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197
V + V +S+ + V AEGP+ +AV G EV++ +L + T + SC P
Sbjct: 98 VVDAVHLESVGFCRASVLAEGPQRWMLAVPGRGSDEVQVLELPSK---TSV---SCL-KP 150
Query: 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257
++ GM M +Q + S + +LAGYEDGS+ +WD+ + + + H EPV+
Sbjct: 151 EAGAR-LGMPMCLQLWQAESSPRPL-LLAGYEDGSLALWDVSARKV-CSRVACHSEPVMA 207
Query: 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--INLERPGISGTSIRPDSKIAAT 315
L++D G+SG A++ + +++L+ G +++ + PGI IRPDSKI AT
Sbjct: 208 LALDPRRARGVSGSAEKVLAVWSLE---GQQALQERGGHSAVSPGIPSLKIRPDSKILAT 264
Query: 316 AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372
AGWD RVR++ +R LA+L +H AT + V+F++ L+A+ S D +++W LYPP
Sbjct: 265 AGWDHRVRVFQWRTMKPLAVLAFHSATVHCVAFNTT-GLLAAGSGDQRISVWSLYPP 320
|
|
| UNIPROTKB|F1RK57 GNB1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 74/220 (33%), Positives = 122/220 (55%)
Query: 159 EGPKYMAVAGEQLSEVEIWDL----NTAERCTRLHQ-NSCGGSPNFSSKGRGMCMAVQAY 213
+GP+ ++ G L ++ +WDL NT L C GS + R M +AV
Sbjct: 78 QGPQLLS-QGRDL-KLCLWDLAEGRNTVVDSVHLESVGFCRGSILAGGQPRWM-LAVPGS 134
Query: 214 LPSKSQGFVN--VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271
++ +LAGYEDGS+ +WD+ + + + H EPV+ L +D G+SG
Sbjct: 135 GSDEANSSPRPLLLAGYEDGSVALWDVSEQKV-CSRIACHTEPVMGLDVDSQKARGVSGS 193
Query: 272 ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331
A++ + ++++D + +++ L PGI+ IRPD KI ATAGWD RVR++ ++
Sbjct: 194 AEKALAVWSVDEQQ-ALQVRRTHQLTNPGIADIKIRPDRKILATAGWDHRVRVFLWQTMK 252
Query: 332 ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371
LA+L +H AT + V+F++D L+A+ S D +++W LYP
Sbjct: 253 PLAVLAFHSATVHCVAFAAD-SLLAAGSGDHRISIWSLYP 291
|
|
| RGD|1594165 Gnb1l "guanine nucleotide binding protein (G protein), beta polypeptide 1-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 76/234 (32%), Positives = 129/234 (55%)
Query: 140 VGETVDTDSLCDSKDDVPAEGPK--YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197
V ++V DS+ K + G +AV G+ EV+I ++ + + C P
Sbjct: 103 VMDSVQLDSVGFCKSSILVRGQLCWMLAVPGKGSDEVQILEMPSKT-------SVCTLKP 155
Query: 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257
+K GM M + + + S + +LAGYEDGS+ +WD+ + + + H EPV+
Sbjct: 156 EADAKP-GMPMCLGLWQTNSSLRPL-LLAGYEDGSVTLWDVSERKV-CSQITCHEEPVMG 212
Query: 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317
L D G+SG A + + +++LD S +KK L PGI+ ++RPD ++ ATAG
Sbjct: 213 LDFDSQKAKGVSGSAGKVLAVWSLDDQQ-SLQVKKTHELINPGIAEVTLRPDHRLFATAG 271
Query: 318 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371
WD R+R++++R LA+L +H A + V+F++D L+A+ S+D +++W LYP
Sbjct: 272 WDHRIRVFHWRTIKPLAVLAFHSAPVHCVAFAAD-GLLAAGSKDQRISVWSLYP 324
|
|
| UNIPROTKB|A4RJA0 asa1 "ASTRA-associated protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 145 (56.1 bits), Expect = 9.7e-19, Sum P(4) = 9.7e-19
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 292 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 350
K +N + G G IR D +I ATAGWD RVR+Y+ + LA+LK+H C AV+FS+
Sbjct: 357 KVVNTKHAGQQGLRIRSDGRIFATAGWDSRVRVYSCKTMKELAVLKWHQVGCFAVAFST 415
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54HW5 | GNB1L_DICDI | No assigned EC number | 0.3020 | 0.8609 | 0.8969 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00014488001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00032589001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa) | • | 0.499 | |||||||
 | GSVIVG00003077001 | SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (350 aa) | • | 0.499 | |||||||
 | GSVIVG00025117001 | SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (350 aa) | • | 0.495 | |||||||
 | GSVIVG00014906001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (390 aa) | • | 0.495 | |||||||
 | GSVIVG00036459001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (441 aa) | • | 0.494 | |||||||
 | GSVIVG00015931001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (414 aa) | • | 0.493 | |||||||
 | GSVIVG00023743001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa) | • | 0.492 | |||||||
 | GSVIVG00018848001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (339 aa) | • | 0.491 | |||||||
 | GSVIVG00003105001 | SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (328 aa) | • | 0.490 | |||||||
 | GSVIVG00010426001 | SubName- Full=Chromosome undetermined scaffold_261, whole genome shotgun sequence; Flags- Fragm [...] (130 aa) | • | 0.489 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 374 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 9e-24
Identities = 85/364 (23%), Positives = 149/364 (40%), Gaps = 33/364 (9%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG-P 72
LRGH S+T + F +L +G++ G +++WD + S + +A P
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
+ S DGTVK WD+ G T++ +S L+ + A ++
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLD 177
Query: 133 KDCYEREVGETVDTDSLCDSKDDV-----PAEGPKYMAVAGEQLSEVEIWDLNTAERC-T 186
++ +L D V +G +A + + +WDL+T + +
Sbjct: 178 GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT-IRLWDLSTGKLLRS 236
Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246
L +S +FS G + +G DG+I +WD+R+ L
Sbjct: 237 TLSGHSDSVVSSFSPDGS------------------LLASGSSDGTIRLWDLRSSSSLLR 278
Query: 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306
+ H VL ++ SG +D + L++L TG + + +S S
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL--ETGKLLSSLTLKGHEGPVSSLSF 336
Query: 307 RPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 365
PD S + + D +R+++ R G L L+ H+ +VSFS D ++++S S D TV
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE-GHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 366 LWEL 369
LW+L
Sbjct: 396 LWDL 399
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 4e-20
Identities = 71/360 (19%), Positives = 112/360 (31%), Gaps = 112/360 (31%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
L+GH VT V F +L G
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATG--------------------------------- 27
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
DGT+K WD+E G L +L T
Sbjct: 28 -------------SGDGTIKVWDLETGELLR--TLKGHTGPVRDV--------------- 57
Query: 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189
+ D Y+A + +WDL T E L
Sbjct: 58 -----------------AASADGT---------YLASGSSD-KTIRLWDLETGECVRTLT 90
Query: 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249
+A + P + + D +I VWD+ G LT ++
Sbjct: 91 G----------HTSYVSSVA---FSPDGRI----LSSSSRDKTIKVWDVET-GKCLTTLR 132
Query: 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309
H + V ++ S D I L++L TG CV + ++ + PD
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL--RTGKCV--ATLTGHTGEVNSVAFSPD 188
Query: 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369
+ ++ D +++++ G L L+ H N+V+FS D L+AS SED T+ +W+L
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.1 bits (201), Expect = 4e-17
Identities = 81/368 (22%), Positives = 135/368 (36%), Gaps = 81/368 (22%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ L GH SVT + F +L +G++ G +++WD + +S+ H+ VS
Sbjct: 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---DPVSS 203
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
G + S DGT++ WD+ G L + T S H
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------TLSGH---------------- 241
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
D+ S D +A + +WDL ++ R
Sbjct: 242 ---------------SDSVVSSFSPDG------SLLASGSSD-GTIRLWDLRSSSSLLRT 279
Query: 189 HQ------NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242
S SP+ + +G DG++ +WD+
Sbjct: 280 LSGHSSSVLSVAFSPDGK----------------------LLASGSSDGTVRLWDLETGK 317
Query: 243 -IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301
+ +K H PV LS + +SGG+D + D TG + E + +
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI-RLWDLRTGKPLKTLEGH---SNV 373
Query: 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 361
S PD ++ ++ D VR+++ GS L L H + ++ FS D K +AS S D
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433
Query: 362 STVALWEL 369
+T+ LW+L
Sbjct: 434 NTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 65/360 (18%), Positives = 118/360 (32%), Gaps = 112/360 (31%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSV 68
+ + L+GH V DV L +G++ +R+WD V + + + SV
Sbjct: 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSV 99
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
A P + + S RD T+K WD+E G + +L T+ + S
Sbjct: 100 AFSPDGRI--LSSSSRDKTIKVWDVETGKCLT--TLRGHTDWVNSVAFS----------- 144
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
+ Q +++WDL T + L
Sbjct: 145 -------------------------------PDGTFVASSSQDGTIKLWDLRTGKCVATL 173
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
+ G + A+ P + +L+ DG+I +WD+ G L +
Sbjct: 174 TGH----------TGEVNSV---AFSPDGEK----LLSSSSDGTIKLWDLST-GKCLGTL 215
Query: 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308
+ H V ++ P
Sbjct: 216 RGHENGVNSVAFS----------------------------------------------P 229
Query: 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368
D + A+ D +R+++ R G + L H + ++++S D K +AS S D T+ +W+
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 1e-09
Identities = 57/282 (20%), Positives = 107/282 (37%), Gaps = 32/282 (11%)
Query: 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P++ L GH V+ + F +L A ++ G +R+WD T + H
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---STGKLLRSTLSGHSD 243
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
V++ G + + S DGT++ WD+ + S+ T+ +S ++ +
Sbjct: 244 SVVSSFSPDG-SLLASGSSDGTIRLWDLRSS---SSLLRTLSGHSSSVLSVAFSPDGKLL 299
Query: 126 AKQANEPKDC-YEREVGETVDTDSLCDSKDDVPA----EGPKYMAVAGEQLSEVEIWDLN 180
A +++ ++ E G+ + + +L + V + + G + +WDL
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
T + + G N S S S V +G DG++ +WD+ +
Sbjct: 360 TGK-----PLKTLEGHSNVLSV-------------SFSPDGRVVSSGSTDGTVRLWDL-S 400
Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
G L + H V L SG +D I L++L
Sbjct: 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 70/275 (25%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
+ V L GH + V+ V F IL + + +++WD + +++ + + S
Sbjct: 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--LRGHTDWVNS 140
Query: 68 VATGPSIGLNKVISQG-RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA 126
VA P ++ +DGT+K WD+ G + T + H
Sbjct: 141 VAFSPD---GTFVASSSQDGTIKLWDLRTGKC-------VATLTGH-------------- 176
Query: 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186
EV +S+ S D G K ++ + + +++WDL+T +
Sbjct: 177 ----------TGEV------NSVAFSPD-----GEKLLSSSSD--GTIKLWDLSTGK--- 210
Query: 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPL 245
+ G N +V A+ P +LA EDG+I VWD+R G +
Sbjct: 211 --CLGTLRGHENG-------VNSV-AFSPDG-----YLLASGSEDGTIRVWDLRT-GECV 254
Query: 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
+ H V L+ SG AD I +++
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 50/239 (20%), Positives = 76/239 (31%), Gaps = 79/239 (33%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHS 60
+ LRGH V V F + + + G +++WD + V + V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 61 AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
A S K++S DGT+K WD+ G + T H
Sbjct: 183 VA---------FSPDGEKLLSSSSDGTIKLWDLSTGKC-------LGTLRGH-------- 218
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
E N S+ S D +A E + + +WDL
Sbjct: 219 ENGVN----------------------SVAFSPDG------YLLASGSEDGT-IRVWDLR 249
Query: 181 TAERCTRL--HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237
T E L H NS +A P + + +G DG+I +WD
Sbjct: 250 TGECVQTLSGHTNSVT------------SLAWS---PDGKR----LASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
+ L+GH VT V F L +G+ G +++WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368
G L LK H +V+FS D K +AS S+D T+ LW+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-05
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
+ L+GH VT V F +L +G+ G +R+WD
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 8e-05
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 330 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367
G L LK H +V+FS D L+AS S+D TV +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI---SGGADQKIVLYNLDHSTG 286
+G + VWD+ + +T MK H + V SID S SG D + L++++
Sbjct: 554 EGVVQVWDVARSQL-VTEMKEHEKRVW--SIDYSSADPTLLASGSDDGSVKLWSINQGVS 610
Query: 287 SCVIKKEINL---ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHHAT 342
IK + N+ + P SG S+ A D +V Y+ R L + H T
Sbjct: 611 IGTIKTKANICCVQFPSESGRSL-------AFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663
Query: 343 CNAVSFSSDCKLMASASEDSTVALWEL 369
+ V F D + S+S D+T+ LW+L
Sbjct: 664 VSYVRFV-DSSTLVSSSTDNTLKLWDL 689
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 374 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.9 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.89 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.88 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.87 | |
| PTZ00421 | 493 | coronin; Provisional | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.86 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.86 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.85 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.85 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.85 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.85 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.79 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.77 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.76 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.76 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.75 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.75 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.74 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.73 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.72 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.66 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.66 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.64 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.63 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.6 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.6 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.57 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.56 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.54 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.52 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.52 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.48 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.43 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.43 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.4 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.37 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.37 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.33 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.32 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.29 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.28 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.26 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.25 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.24 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.22 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.2 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.16 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.15 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.11 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.1 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.08 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.06 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.05 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.03 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.02 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.02 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.01 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.0 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.99 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.97 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.96 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.95 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.95 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.93 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.92 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.88 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.88 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.86 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.85 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.84 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.81 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.81 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.8 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.76 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.71 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.66 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.63 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.63 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.57 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.57 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.54 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.53 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.51 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.5 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.49 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.47 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.45 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.45 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.43 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.41 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.4 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.38 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.33 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.3 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.28 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.25 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.21 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.18 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.16 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.15 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.1 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.06 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.02 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.01 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 98.01 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.91 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.85 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.73 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.72 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.71 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.65 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.62 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.54 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.53 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.53 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.53 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.52 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.43 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.32 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.24 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.19 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.13 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.1 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.89 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.82 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.79 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.79 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.69 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.67 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.59 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.49 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.42 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.39 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.38 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.22 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.83 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.82 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.73 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.64 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.58 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.57 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.55 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.45 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.43 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.29 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 95.29 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.17 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.03 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.62 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.47 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.44 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.38 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.13 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.61 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.56 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.43 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.25 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 93.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.01 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.91 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.82 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.68 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 92.14 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.88 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.28 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 91.19 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 91.1 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 90.65 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 90.4 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 90.34 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 89.89 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.46 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.03 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.81 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 88.65 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 88.33 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 88.24 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.86 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 87.78 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 87.7 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.96 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 86.94 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 86.66 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 86.48 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 86.24 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 85.65 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.25 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.0 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 84.86 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 84.78 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.72 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.5 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 82.46 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 81.33 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 81.16 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 80.7 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 80.39 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=313.76 Aligned_cols=347 Identities=18% Similarity=0.265 Sum_probs=249.3
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..++...+.||.++|.|++|+|+|..|+|||-|.++|+||+.+..+..+.++|.+ -|.+++++| |+.+++||+.||
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~--WVlcvawsP--Dgk~iASG~~dg 179 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN--WVLCVAWSP--DGKKIASGSKDG 179 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCcc--EEEEEEECC--CcchhhccccCC
Confidence 3467778899999999999999999999999999999999999888889888874 588999988 789999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeecc----ccccccccCCCCcccccc--cCceeecCCCCCCCCCCC-CC
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE----PYANAKQANEPKDCYERE--VGETVDTDSLCDSKDDVP-AE 159 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 159 (374)
+|++||+.+|++...+. ..+.-++.++..... +.......+.+..+..++ .+..+. ....+...... .-
T Consensus 180 ~I~lwdpktg~~~g~~l---~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRAL---RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRW 255 (480)
T ss_pred eEEEecCCCCCcccccc---cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEE
Confidence 99999999987653321 111111222211111 111111111111111111 111110 01111111000 01
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCcc-CCCCCcCCCCCcceeEEEeeecCC---------------------
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSK--------------------- 217 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 217 (374)
++.-++++|+.|++|++|+...|.++..+..+.. .+....++. +..-..+|-+..
T Consensus 256 GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd---y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 256 GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD---YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch---hhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 2233678999999999999999888777765431 111111100 000000111111
Q ss_pred CCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 218 SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 218 ~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.+....+++||+|.++.+|+.....+++..+.+|..-|+.+.|+|++.+++++|.|..|||||.++ |+.+ ..++.|
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t--Gk~l--asfRGH 408 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT--GKFL--ASFRGH 408 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC--cchh--hhhhhc
Confidence 112236999999999999998777778888999999999999999999999999999999998764 4433 345567
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
-..|+.++++.|.++|+|++.|.|+++||+++.+...-|.+|...|.++.|+|||+.+++|+.|..+|||.
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 77899999999999999999999999999999998889999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=281.97 Aligned_cols=297 Identities=19% Similarity=0.279 Sum_probs=233.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..++|+||...|+++.|++|.++|+|+|.||.+.|||..+..+.+.++. +..-|+.++++|+ ++.++.||.|...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPS--g~~VAcGGLdN~C 121 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPS--GNFVACGGLDNKC 121 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCC--CCeEEecCcCcee
Confidence 45689999999999999999999999999999999999988877766543 3356999999994 6889999999999
Q ss_pred EEEecCCCCCCCCCcee-eeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 89 KCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
-|+++.+.... .... .+....|..- ..|.. +.. +. .+++
T Consensus 122 siy~ls~~d~~--g~~~v~r~l~gHtgy-----------------lScC~------------------f~d-D~--~ilT 161 (343)
T KOG0286|consen 122 SIYPLSTRDAE--GNVRVSRELAGHTGY-----------------LSCCR------------------FLD-DN--HILT 161 (343)
T ss_pred EEEeccccccc--ccceeeeeecCccce-----------------eEEEE------------------EcC-CC--ceEe
Confidence 99999753110 0000 1111111100 00000 001 11 2456
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|.+.-+||+++++.+..+..+ .+..+.+. +.|. ....+++|+-|++.++||+|.+ ...++
T Consensus 162 ~SGD~TCalWDie~g~~~~~f~GH----------~gDV~sls---l~p~---~~ntFvSg~cD~~aklWD~R~~-~c~qt 224 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQVFHGH----------TGDVMSLS---LSPS---DGNTFVSGGCDKSAKLWDVRSG-QCVQT 224 (343)
T ss_pred cCCCceEEEEEcccceEEEEecCC----------cccEEEEe---cCCC---CCCeEEecccccceeeeeccCc-ceeEe
Confidence 777899999999999998888753 23333333 2221 2336999999999999999984 67899
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|...|+++.|.|++..+++||.|+++|+||++....... .+......+|++++||..|++|.+|..|.++.+||.
T Consensus 225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--eccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999999999999999999999999999999986543322 333333457999999999999999999999999999
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
-.++....|.+|++.|+++..+|||..|+|||+|.++|||.
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=284.65 Aligned_cols=286 Identities=20% Similarity=0.303 Sum_probs=226.1
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
.|-+.+|..+.|+++++.|+|||.+|.++||+..+...+.++.+|.. .+.++.|.|..++..++|++.||++|+|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~--~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS--RVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc--ceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 46789999999999999999999999999999999888889989874 4778888885345689999999999999997
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
+-.... .+. .|...+. ...+.+. ++ ++.+++.|.+-
T Consensus 250 ~e~~l~----~l~---gH~~RVs-----------------------------------~VafHPs-G~-~L~TasfD~tW 285 (459)
T KOG0272|consen 250 QETPLQ----DLE---GHLARVS-----------------------------------RVAFHPS-GK-FLGTASFDSTW 285 (459)
T ss_pred CCcchh----hhh---cchhhhe-----------------------------------eeeecCC-Cc-eeeecccccch
Confidence 642211 110 0100000 0012222 33 45677889999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
++||+++++.+....+ ++. ....+ .|.++ ...+++|+-|..-++||+|+..+ +-.+.+|..+
T Consensus 286 RlWD~~tk~ElL~QEG--------Hs~--~v~~i---af~~D----GSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~ 347 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEG--------HSK--GVFSI---AFQPD----GSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKE 347 (459)
T ss_pred hhcccccchhhHhhcc--------ccc--cccee---EecCC----CceeeccCccchhheeecccCcE-EEEecccccc
Confidence 9999999875433322 211 11122 23332 23688899999999999998554 5568899999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
|..|.|+|+|..+||||.|+++++||++.... ...+.+|..-|+.+.|+| .|++|++++.|++++||...+..++
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 99999999999999999999999999986543 345667888899999999 6788999999999999999999999
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 334 AILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 334 ~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+++.||++.|.+++++||+.+++|+|.|.++|+|.
T Consensus 424 ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=254.75 Aligned_cols=293 Identities=20% Similarity=0.324 Sum_probs=224.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.|+..+.||++.|+.+.|+|+|..|+||+.|..|.+|+... -+....+.+|.. .|+.+-+.. ++++++|+|.|++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg--AVM~l~~~~--d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG--AVMELHGMR--DGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccc--eeEeeeecc--CCCEEEEecCCce
Confidence 68888999999999999999999999999999999999542 223455667764 477777765 7789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|+.||+++|++... ...|...+... . +...+..++.+
T Consensus 114 v~~wD~~tG~~~rk-------~k~h~~~vNs~-----------------------------------~-p~rrg~~lv~S 150 (338)
T KOG0265|consen 114 VRGWDAETGKRIRK-------HKGHTSFVNSL-----------------------------------D-PSRRGPQLVCS 150 (338)
T ss_pred EEEEecccceeeeh-------hccccceeeec-----------------------------------C-ccccCCeEEEe
Confidence 99999999965321 11111000000 0 01112357789
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++++|||+++...+.++... +-.....|. +....+++|.-|+.|++||++... .+.+
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~~k--------------yqltAv~f~----d~s~qv~sggIdn~ikvWd~r~~d-~~~~ 211 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFENK--------------YQLTAVGFK----DTSDQVISGGIDNDIKVWDLRKND-GLYT 211 (338)
T ss_pred cCCCceEEEEeecccchhhccccc--------------eeEEEEEec----ccccceeeccccCceeeeccccCc-ceEE
Confidence 999999999999987655444211 001111222 223358899999999999998744 5778
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC--eEEEEEeeecCC--CCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG--SCVIKKEINLER--PGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
+.||.++|+.+...+.+..+++-+-|+++++||++.... +++...+-..|. ......+++|++..+.+|+.|+.+.
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 999999999999999999999999999999999976432 333333333332 2355678999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
+||....+.++.+.+|.+.|++++|+|...+|.+++.|++|.+=
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99998888999999999999999999999999999999999873
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=255.78 Aligned_cols=295 Identities=20% Similarity=0.306 Sum_probs=232.4
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
.|++.+...+.||..+|+.+-|+|+..+++++++|++|++||..+++....+.+|... +..++++.+ +.+++++++
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a~--Gk~l~tcSs 170 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDAS--GKYLATCSS 170 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEecC--ccEEEecCC
Confidence 3566778889999999999999999999999999999999999999998899999865 777888774 589999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|-.+++||.++-- .+++....|-..++.+ . +.+- + ..
T Consensus 171 Dl~~~LWd~~~~~------~c~ks~~gh~h~vS~V-----------------~------------------f~P~-g-d~ 207 (406)
T KOG0295|consen 171 DLSAKLWDFDTFF------RCIKSLIGHEHGVSSV-----------------F------------------FLPL-G-DH 207 (406)
T ss_pred ccchhheeHHHHH------HHHHHhcCcccceeeE-----------------E------------------EEec-C-Ce
Confidence 9999999987520 0111111110000000 0 0011 1 24
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++++.|++|+.|++.++.++-+++.+. ..+.+. .. +.....+++++.|.+|++|-+.+ ...
T Consensus 208 ilS~srD~tik~We~~tg~cv~t~~~h~-----------ewvr~v--~v----~~DGti~As~s~dqtl~vW~~~t-~~~ 269 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTGYCVKTFPGHS-----------EWVRMV--RV----NQDGTIIASCSNDQTLRVWVVAT-KQC 269 (406)
T ss_pred eeecccccceeEEecccceeEEeccCch-----------HhEEEE--Ee----cCCeeEEEecCCCceEEEEEecc-chh
Confidence 6688889999999999999988887542 122111 11 23344688899999999999875 334
Q ss_pred eeeeecCccCeEEEEEecC---------------CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 245 LTAMKVHLEPVLCLSIDES---------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~---------------~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
...+..|..+|.|+++-|. ++.+.++|.|++||+||+. ++.|+ .++..|..+|++++|+|.
T Consensus 270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg~cL--~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 270 KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TGMCL--FTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--CCeEE--EEEecccceeeeeEEcCC
Confidence 5668889999999998222 2467889999999999995 45555 457788899999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
|+||+|...|+++++||++..++++++..|+..|++++|+-+-.+++|||-|.++++|.
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999999999888999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=238.30 Aligned_cols=294 Identities=19% Similarity=0.304 Sum_probs=213.6
Q ss_pred CCCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcc-----cceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
.....+|+||++.|+.++..+. ..+|++++.|.++.+|++.. |.+++.+.+|+ |.+..+..++ +++.++|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~--dg~~alS 80 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSS--DGNFALS 80 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc--eEecceEEcc--CCceEEe
Confidence 3456789999999999999876 57899999999999999854 45577788876 4466666665 7799999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
++.|+++|+||+.+|+... .++.++... + +.. +.+++.
T Consensus 81 ~swD~~lrlWDl~~g~~t~--~f~GH~~dV----l------------------sva------------------~s~dn~ 118 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTR--RFVGHTKDV----L------------------SVA------------------FSTDNR 118 (315)
T ss_pred ccccceEEEEEecCCcEEE--EEEecCCce----E------------------EEE------------------ecCCCc
Confidence 9999999999999874211 011000000 0 000 111221
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
.+++|+.|++|++|++.... ..++... .......| ..|.|... .+.+++++.|++||+||+++.
T Consensus 119 --qivSGSrDkTiklwnt~g~c-k~t~~~~--------~~~~WVsc---vrfsP~~~--~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 119 --QIVSGSRDKTIKLWNTLGVC-KYTIHED--------SHREWVSC---VRFSPNES--NPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred --eeecCCCcceeeeeeecccE-EEEEecC--------CCcCcEEE---EEEcCCCC--CcEEEEccCCceEEEEccCCc
Confidence 46799999999999987543 3343321 10112222 34666542 236999999999999999864
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
...+.+.+|+..++.++++|++..+++|+.||.+.|||++... ++.. + .+...|.+++|+|+...|+ +..+-.
T Consensus 183 -~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k--~lys--l-~a~~~v~sl~fspnrywL~-~at~~s 255 (315)
T KOG0279|consen 183 -QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK--NLYS--L-EAFDIVNSLCFSPNRYWLC-AATATS 255 (315)
T ss_pred -chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc--eeEe--c-cCCCeEeeEEecCCceeEe-eccCCc
Confidence 3456788999999999999999999999999999999997543 3322 2 2345799999999875555 555677
Q ss_pred EEEEEccCCeEEEEec----cc-----CCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 322 VRIYNYRKGSALAILK----YH-----HATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~----~h-----~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
|+|||+.+++.+..++ +. .-...+++|++||..|+.+=.|+.|++|.+.
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999887665443 11 3356789999999999999999999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=233.57 Aligned_cols=277 Identities=18% Similarity=0.286 Sum_probs=201.1
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecc
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~ 110 (374)
-+|+|+|.|.+||+|.+.+|+|..+++ |. ...+..++..+ +...|+.++. .-||++|++++.. .|........
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~-dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HP-DSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cC-ccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCC--CceeEEeccC
Confidence 479999999999999999999998876 43 24577777776 5455666655 6799999998743 1222111100
Q ss_pred eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEecc
Q 017296 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (374)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~ 190 (374)
+++..+. |..+ ++ ..++|++|+++||||++...+.+.+..
T Consensus 84 ------------------------------kNVtaVg--------F~~d-gr-WMyTgseDgt~kIWdlR~~~~qR~~~~ 123 (311)
T KOG0315|consen 84 ------------------------------KNVTAVG--------FQCD-GR-WMYTGSEDGTVKIWDLRSLSCQRNYQH 123 (311)
T ss_pred ------------------------------CceEEEE--------Eeec-Ce-EEEecCCCceEEEEeccCcccchhccC
Confidence 0111110 1111 12 467899999999999998554333322
Q ss_pred CccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE
Q 017296 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~ 270 (374)
+ ..... .... ++...|++|.++|.|++||+++.......+.....+|.++.+.+++..++.+
T Consensus 124 ~---------spVn~-------vvlh--pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 124 N---------SPVNT-------VVLH--PNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred C---------CCcce-------EEec--CCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 1 11111 1111 2233699999999999999987544444445556799999999999999999
Q ss_pred ecCCeEEEEEcCCCCCeEEEE--EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEE
Q 017296 271 GADQKIVLYNLDHSTGSCVIK--KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVS 347 (374)
Q Consensus 271 s~D~~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~ 347 (374)
-.-|++.+|++-..+..-.+. ..++.|...+....||||+++||+++.|++|+||+.++. +.-.++.+|...++..+
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 999999999986543322222 235667778999999999999999999999999999887 44457889999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 348 FSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
||.||+||+|||.|+++|+|++...
T Consensus 266 FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred eccCccEEEecCCCCceeecccccC
Confidence 9999999999999999999998654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=246.17 Aligned_cols=290 Identities=19% Similarity=0.316 Sum_probs=220.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++.+++.||.+.|+||++.|-+.+++|||.|++++|||+.+|+...++.+|... +..++++. ---++.+++.|++|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~--rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSK--RHPYLFSAGEDKQV 217 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecc--cCceEEEecCCCee
Confidence 688999999999999999999999999999999999999999988888888644 56666665 22589999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+.||++.++.+ +...+|...+..+. . . + ...++++|
T Consensus 218 KCwDLe~nkvI-------R~YhGHlS~V~~L~-----------------l--h----------------P--Tldvl~t~ 253 (460)
T KOG0285|consen 218 KCWDLEYNKVI-------RHYHGHLSGVYCLD-----------------L--H----------------P--TLDVLVTG 253 (460)
T ss_pred EEEechhhhhH-------HHhccccceeEEEe-----------------c--c----------------c--cceeEEec
Confidence 99999887543 22223322221111 0 0 0 01257788
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|.++||||+++...+..+.++... +..+ .+.+.. +.+++||-|++|++||++. +..+.++
T Consensus 254 grDst~RvWDiRtr~~V~~l~GH~~~------------V~~V-~~~~~d----pqvit~S~D~tvrlWDl~a-gkt~~tl 315 (460)
T KOG0285|consen 254 GRDSTIRVWDIRTRASVHVLSGHTNP------------VASV-MCQPTD----PQVITGSHDSTVRLWDLRA-GKTMITL 315 (460)
T ss_pred CCcceEEEeeecccceEEEecCCCCc------------ceeE-EeecCC----CceEEecCCceEEEeeecc-CceeEee
Confidence 89999999999999888887654211 0111 121111 1489999999999999987 5567788
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..|...+++++.+|+...++++|.|+ |+-|++..+. . ...+..|..-+.+++...|+ ++++|+.+|.+.+||.+
T Consensus 316 t~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~--f--~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 316 THHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE--F--LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred ecccceeeEEecCCchhhhhccCCcc-ceeccCCccc--h--hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 89999999999999999999999886 8999985432 1 12255566678888888777 77889999999999999
Q ss_pred CCeEEEEecc--------cCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILKY--------HHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~~--------h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++..++.++. -+..|.+..|...|..|+||..|++|++|.-+
T Consensus 390 sg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 390 SGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 8865543321 23567888898899999999999999999754
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=247.47 Aligned_cols=286 Identities=22% Similarity=0.330 Sum_probs=200.6
Q ss_pred eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
+-..+.+|. ..|+++.|+| ++.+|+||+.|.|+|+||+.+.. |....+.+..+. +++.-.|...-++.+.
T Consensus 107 CssS~~GH~--e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeT----p~~t~KgH~~WV--lcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 107 CSSSIAGHG--EAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTET----PLFTCKGHKNWV--LCVAWSPDGKKIASGS 176 (480)
T ss_pred eccccCCCC--CcEEEEEecC--CCceEEecCCCceEEeeccCCCC----cceeecCCccEE--EEEEECCCcchhhccc
Confidence 334566675 4589999998 67899999999999999998752 333444333222 2222223332222222
Q ss_pred CCc-ccccc--cCceeecCCCCCCCC-------CCC-CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcC
Q 017296 132 PKD-CYERE--VGETVDTDSLCDSKD-------DVP-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (374)
Q Consensus 132 ~~~-~~~~~--~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~ 200 (374)
... ...++ .+..+......+... ... .+..+ .+++++.|+.++|||+..++++..+..+...
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~------ 249 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS------ 249 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccc------
Confidence 211 11111 222222222222221 011 11222 5778889999999999999998888654211
Q ss_pred CCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-----------cCCCc---
Q 017296 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-----------ESCNG--- 266 (374)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~--- 266 (374)
..|+ .+ -|..++++||.|++|++|+... +.....+++|...|+.++.+ +.+..
T Consensus 250 ----VTCv----rw----GG~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 250 ----VTCV----RW----GGEGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ----eEEE----EE----cCCceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 1111 11 1334799999999999999875 56678899999999999774 32332
Q ss_pred ----------------------eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 267 ----------------------GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 267 ----------------------~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
+++||.|.++.+|+-.... .....+..|+.-|..+.||||+++||||+.|+.|++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence 7999999999999753221 112345677788999999999999999999999999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
||-++|+.+.++++|-+.|..++|+.|.++|+|+|.|.|+|+|++.
T Consensus 394 W~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 9999999999999999999999999999999999999999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=262.59 Aligned_cols=295 Identities=17% Similarity=0.336 Sum_probs=221.3
Q ss_pred CCCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|.+.+.++.||+..|+++.|.| .+.+|+|++.|+.|+|||+.. ++++.++.+|... |..++|+. .+..++|+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~--Vrd~~~s~--~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKP--VRDASFNN--CGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhh--hhhhhccc--cCCeeeeeec
Confidence 5678999999999999999999 899999999999999999976 7789999999754 77778876 6789999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+++|+||.++|++.. ..+... ...|.. +.++++ -+
T Consensus 279 D~~lKlwDtETG~~~~----~f~~~~---------------------~~~cvk------------------f~pd~~-n~ 314 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLS----RFHLDK---------------------VPTCVK------------------FHPDNQ-NI 314 (503)
T ss_pred ceeeeeeccccceEEE----EEecCC---------------------Cceeee------------------cCCCCC-cE
Confidence 9999999999996421 111000 001111 223332 35
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++|+.|+.|+.||+++++.++....+. +.... ..|.+. + ..+++.++|++++||+.+.+. +
T Consensus 315 fl~G~sd~ki~~wDiRs~kvvqeYd~hL----------g~i~~---i~F~~~---g-~rFissSDdks~riWe~~~~v-~ 376 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKVVQEYDRHL----------GAILD---ITFVDE---G-RRFISSSDDKSVRIWENRIPV-P 376 (503)
T ss_pred EEEecCCCcEEEEeccchHHHHHHHhhh----------hheee---eEEccC---C-ceEeeeccCccEEEEEcCCCc-c
Confidence 6678889999999999998766554321 01111 124332 2 368999999999999997643 2
Q ss_pred eee-eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC--CCeEEEEECCCCCEEEEEeCCCe
Q 017296 245 LTA-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER--PGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 245 ~~~-~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
+.. ...+.....|+..+|.+..++.-+.|+.|.++.+...- +....+....|. ..-..+.|||||++|++|..||.
T Consensus 377 ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 377 IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred chhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 322 22244567788889999999999999999999864321 111111122222 22346889999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEec
Q 017296 322 VRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWE 368 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~ 368 (374)
+.+||.++-+.+..+++|.+.|..+.|+|-.. .+||+|+||.|++|+
T Consensus 456 v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999999665 899999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=264.04 Aligned_cols=345 Identities=17% Similarity=0.229 Sum_probs=226.7
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+++++++|.+.|++|+|++++..++++|.|..|.|||+.+-+++.+++....-..++-+.-.....+.+++++|.+|.++
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 68899999999999999999999999999999999999776666555433222222222111111134899999999999
Q ss_pred EEecCCCCCCCCCcee---eeecceee-------e-----eeeee-ccccccccccCCCCc----ccccccC-c--eeec
Q 017296 90 CWDIENGGLSSNPSLT---IKTNSYHF-------C-----KLSLV-KEPYANAKQANEPKD----CYEREVG-E--TVDT 146 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~---~~~~~~~~-------~-----~~~~~-~~~~~~~~~~~~~~~----~~~~~~~-~--~~~~ 146 (374)
+||..++.+....... ......+. + .+.+. ........+..+.++ +....+. . .+..
T Consensus 264 ~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT 343 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT 343 (775)
T ss_pred EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe
Confidence 9999988653211100 00000000 0 00000 000000000000000 0000000 0 0111
Q ss_pred CCC----------------CCCCCCC--CCCCCceEEEcccCCCeEEEEecCCCceeEE-eccCccCCCCCcCCCCCcce
Q 017296 147 DSL----------------CDSKDDV--PAEGPKYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMC 207 (374)
Q Consensus 147 ~~~----------------~~~~~~~--~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 207 (374)
++. .|..... .......++++++.|+++++|.++.+..... +.+. .++......++
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-----~gH~~svgava 418 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-----NGHTNSVGAVA 418 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-----cccccccceee
Confidence 110 0111111 1123346888999999999999855432211 1111 12222222222
Q ss_pred eEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC----ce----eeeecCccCeEEEEEecCCCceEEEecCCeEEEE
Q 017296 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----PL----TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~----~~----~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lw 279 (374)
++ ..+...++++|+|++|++|++..... +. .+...|...|+|+++.|+...++|||.|.++++|
T Consensus 419 ~~--------~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 419 GS--------KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred ec--------ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 21 12344689999999999999975111 11 1234588999999999998999999999999999
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
+++ ...+...+..|+.++.++.|+|+.+.||+++.|+||+||.+.++++++++.||...|..+.|-.+|+.|+|++
T Consensus 491 ~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 491 DLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 997 2345567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCC
Q 017296 360 EDSTVALWELYP 371 (374)
Q Consensus 360 ~D~~v~~W~~~~ 371 (374)
+||.+|+|++..
T Consensus 567 adGliKlWnikt 578 (775)
T KOG0319|consen 567 ADGLIKLWNIKT 578 (775)
T ss_pred CCCcEEEEeccc
Confidence 999999999864
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=263.01 Aligned_cols=255 Identities=22% Similarity=0.411 Sum_probs=198.3
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-------------------------------ee
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------------------------------TV 53 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-------------------------------~~ 53 (374)
..|.-+..++..-...++|..|++++.+|+.|=.|..|++|.+...+ ..
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 34445667777778899999999999999999999999999976311 11
Q ss_pred eeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCC
Q 017296 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (374)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (374)
.++.+|. ..|+.+.|+| +.+.|+|+|+|+++|+|.+.+..+
T Consensus 445 ~~L~GH~--GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~----------------------------------- 485 (707)
T KOG0263|consen 445 RTLYGHS--GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSC----------------------------------- 485 (707)
T ss_pred EEeecCC--Cceeeeeecc--cccceeeccCCcceeeeeccccee-----------------------------------
Confidence 2233444 3366666666 445666777777777777665311
Q ss_pred cccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEee
Q 017296 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 213 (374)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (374)
.+.+.| +..-|||+. |
T Consensus 486 -----------------------------~V~y~G---H~~PVwdV~--------------------------------F 501 (707)
T KOG0263|consen 486 -----------------------------LVIYKG---HLAPVWDVQ--------------------------------F 501 (707)
T ss_pred -----------------------------EEEecC---CCcceeeEE--------------------------------e
Confidence 001111 123345432 2
Q ss_pred ecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe
Q 017296 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 214 ~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.| .| .++++|+.|++-++|.... ..|+..+.+|...|.|+.|+|+..++++||.|.++|+||+..+. .+ ..
T Consensus 502 ~P---~G-yYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~V--Ri 572 (707)
T KOG0263|consen 502 AP---RG-YYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SV--RI 572 (707)
T ss_pred cC---Cc-eEEEecCCCceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EE--EE
Confidence 11 12 2688999999999999865 56788899999999999999999999999999999999996543 32 33
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 294 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.+|...|.+++|||+|++|++|+.||.|++||+..++++..+.+|++.|.++.|+.||..||+||.|++|++||+..
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999853
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=247.42 Aligned_cols=248 Identities=21% Similarity=0.273 Sum_probs=195.6
Q ss_pred CCeEEeecCCCceeEEEEeCC--CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~--~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..+.+|+||++.|.++.|+|. +.-|+|++.||++++|++.+..++..+.+|. ..|..++|.| +|+.|+|++.|.
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHP--sG~~L~TasfD~ 283 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHP--SGKFLGTASFDS 283 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecC--CCceeeeccccc
Confidence 788999999999999999996 5689999999999999998878888888886 5688999988 568999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+-|+||+.++..... .. +|...+ .+. .+.++| -+++
T Consensus 284 tWRlWD~~tk~ElL~----QE---GHs~~v-----------------~~i------------------af~~DG--SL~~ 319 (459)
T KOG0272|consen 284 TWRLWDLETKSELLL----QE---GHSKGV-----------------FSI------------------AFQPDG--SLAA 319 (459)
T ss_pred chhhcccccchhhHh----hc---cccccc-----------------cee------------------EecCCC--ceee
Confidence 999999988632110 00 000000 000 011222 2678
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+|+.|..-+|||++++.++-.+..+... .+ . ..|.| +...+++|+.|++++|||++.. ..+.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~----------I~--~-V~fsP----NGy~lATgs~Dnt~kVWDLR~r-~~ly 381 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKE----------IL--S-VAFSP----NGYHLATGSSDNTCKVWDLRMR-SELY 381 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccc----------ee--e-EeECC----CceEEeecCCCCcEEEeeeccc-ccce
Confidence 8999999999999999998888754211 11 1 12332 3347999999999999999974 4588
Q ss_pred eeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 247 AMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
++.+|.+-|..|.|+| .+..++|+|.|+++++|.-+. +...+.+..|...|.++.++||+++|++++.|+++++|
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~----~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT----WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcceeeecCCC----cccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 8999999999999997 677889999999999997653 23345677899999999999999999999999999999
Q ss_pred E
Q 017296 326 N 326 (374)
Q Consensus 326 d 326 (374)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=241.97 Aligned_cols=295 Identities=18% Similarity=0.280 Sum_probs=217.0
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCccc--ce--eeeee------eee--ceeeeEEeccCCcc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH--RT--VSSSW------VHS--AAHGIVSVATGPSI 74 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~--~~--~~~~~------~~~--~~~~~~~~~~~~~~ 74 (374)
++..+++-.|+.+|.+.+|+|-.. +|++|+.|.+.++|++... .. ...+. ++. ....+.+++|+.
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-- 245 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-- 245 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--
Confidence 344444555999999999999776 8999999999999998641 11 00000 111 113578888887
Q ss_pred ccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCC
Q 017296 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD 154 (374)
Q Consensus 75 ~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (374)
+++.|++|+.||.+|+|+...+.. . +...|- .|.. . +.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~-~-------tl~~Hk-------gPI~------------s------lK--------- 283 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLI-S-------TLGQHK-------GPIF------------S------LK--------- 283 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhh-h-------hhhccC-------CceE------------E------EE---------
Confidence 678999999999999999865421 0 001110 0000 0 00
Q ss_pred CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE
Q 017296 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (374)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~ 234 (374)
-.++..++++++-|+++.+||.-+++..+.+.-+..+ + ..+. . .+...+++.+.||.|+
T Consensus 284 ---Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~---~---------lDVd-W-----~~~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 284 ---WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP---A---------LDVD-W-----QSNDEFATSSTDGCIH 342 (524)
T ss_pred ---EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC---c---------cceE-E-----ecCceEeecCCCceEE
Confidence 0122345667788999999999888765554322110 0 0010 0 0112588999999999
Q ss_pred EEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC---
Q 017296 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK--- 311 (374)
Q Consensus 235 iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--- 311 (374)
++.+.. ..|..++++|..+|.++.++|.+..|+++|.|+++++|++..... ...+..|...|+.+.++|++.
T Consensus 343 V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 343 VCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred EEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc----hhhhhhhccceeeEeecCCCCccC
Confidence 999975 568899999999999999999999999999999999999754322 123456777789999988543
Q ss_pred ------EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 312 ------IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 312 ------~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+++++.|++|++||+..+.++.++..|..+|.+|+|+|+|++||||+.||.|.+|+....
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 6899999999999999999999999999999999999999999999999999999998654
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=243.70 Aligned_cols=338 Identities=19% Similarity=0.276 Sum_probs=229.4
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
-....++.||-+.|++|.|+.|.++|++||.|-+++||+....+. ...+.+|. ..|+++-|.. +...+++.+.|
T Consensus 135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk--d~VvacfF~~--~~~~l~tvskd 210 (893)
T KOG0291|consen 135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK--DYVVACFFGA--NSLDLYTVSKD 210 (893)
T ss_pred ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC--cceEEEEecc--CcceEEEEecC
Confidence 356778899999999999999999999999999999999876655 33455564 4578887876 45679999999
Q ss_pred CeEEEEecCCCCCCCCC---------------ceeeeecce-------eeee-----e---eeeccccccccccCCCCc-
Q 017296 86 GTVKCWDIENGGLSSNP---------------SLTIKTNSY-------HFCK-----L---SLVKEPYANAKQANEPKD- 134 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~---------------~~~~~~~~~-------~~~~-----~---~~~~~~~~~~~~~~~~~~- 134 (374)
|.+.+|........... ....+...+ |+++ + .+-+........+.....
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 99999998732110000 000000000 0100 0 000000000111110000
Q ss_pred ccccccCceeecCCCCCCC-CCCC-CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 135 CYEREVGETVDTDSLCDSK-DDVP-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
.++......+...+..... ..+. ...+.++++.++.-+.+-||+..+..-+.+.+.+ .. +..+ ..
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--------~~--~i~~---l~ 357 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--------SD--RITS---LA 357 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--------cc--ceee---EE
Confidence 0111111111111111011 1111 1224678888888889999998887655554432 11 1222 23
Q ss_pred eecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
+.|+ ...+++|++||.||+||... +.++.++..|+..|+.+.|...++.+++.|.||+|+.||+....+-.
T Consensus 358 YSpD----gq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR---- 428 (893)
T KOG0291|consen 358 YSPD----GQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR---- 428 (893)
T ss_pred ECCC----CcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee----
Confidence 4433 23799999999999999975 67889999999999999999999999999999999999997543211
Q ss_pred eeecCC-CCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 293 EINLER-PGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 293 ~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..+. ....+++..|.|.++..|+.|.. |.+|++++|+.+..+.||+++|.++.|+|+|..|||+|+|+|||+|+++
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 122221 23678889999999988888864 9999999999999999999999999999999999999999999999986
Q ss_pred C
Q 017296 371 P 371 (374)
Q Consensus 371 ~ 371 (374)
.
T Consensus 509 ~ 509 (893)
T KOG0291|consen 509 S 509 (893)
T ss_pred c
Confidence 4
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=266.95 Aligned_cols=292 Identities=15% Similarity=0.224 Sum_probs=205.9
Q ss_pred eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc----c----eeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
+.+|...|.+++|+++|++|+||+.|++|+|||.... . ++..+..+ ..+.++++.+. +.+++++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR---SKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc---CceeeEEeccC-CCCEEEEEeCC
Confidence 4459999999999999999999999999999997531 1 11122111 24566677653 35789999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+.+++... .+..+..... .. .+.+.+ ..++
T Consensus 555 g~v~lWd~~~~~~~~----~~~~H~~~V~----------------------~l----------------~~~p~~-~~~L 591 (793)
T PLN00181 555 GVVQVWDVARSQLVT----EMKEHEKRVW----------------------SI----------------DYSSAD-PTLL 591 (793)
T ss_pred CeEEEEECCCCeEEE----EecCCCCCEE----------------------EE----------------EEcCCC-CCEE
Confidence 999999998763210 0000000000 00 011111 2256
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++|+.|++|++||+++++.+..+... ....++ .+.+ .....+++|+.||.|++||++....++
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------~~v~~v---~~~~---~~g~~latgs~dg~I~iwD~~~~~~~~ 654 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGVSIGTIKTK-----------ANICCV---QFPS---ESGRSLAFGSADHKVYYYDLRNPKLPL 654 (793)
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecC-----------CCeEEE---EEeC---CCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 77888999999999998876655321 111111 2221 122368999999999999998755566
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC--eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG--SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
..+.+|...|.++.|. ++..+++++.|++|++||+..... .......+..|...+..++|+|++++|++|+.|++|+
T Consensus 655 ~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 655 CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEE
Confidence 7788999999999996 456789999999999999864211 0111234556667788999999999999999999999
Q ss_pred EEEccCCeEEEE-------------ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAI-------------LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~-------------~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|+...+..+.. ...|...|.+++|+|++..|++|+.||+|++|++.
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~~ 793 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEMV 793 (793)
T ss_pred EEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEecC
Confidence 999865543321 13355679999999999999999999999999873
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=233.88 Aligned_cols=352 Identities=19% Similarity=0.266 Sum_probs=229.5
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee---eeeceeeeEEeccCCccccceeee
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
.||-+...+++.|..-|+|++|+|||.+++|+|.||++.++|-.+|+.+..+. .|. ..+.+++|+| |+.+++|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk--GsIfalsWsP--Ds~~~~T 252 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK--GSIFALSWSP--DSTQFLT 252 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc--ccEEEEEECC--CCceEEE
Confidence 46667888899999999999999999999999999999999999999887766 443 4588888887 7899999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeeccee-eeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCC----CC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD----DV 156 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 156 (374)
+|.|+++|+||+.++++...-....+..... .|.. ++ .........+....+..+... +......+... ..
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW--qk-d~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW--QK-DHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTV 328 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEE--eC-CeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEE
Confidence 9999999999999886532100000000000 0100 00 000000000000000000000 00000111111 11
Q ss_pred CCCCCceEEEcccCCCeEEEEecCCCceeEEec-----------c----------------------CccCCCC--CcCC
Q 017296 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH-----------Q----------------------NSCGGSP--NFSS 201 (374)
Q Consensus 157 ~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~-----------~----------------------~~~~~~~--~~~~ 201 (374)
.+++ + .+++|+.|+.|.-||..++.+..... . ....... ....
T Consensus 329 ~~d~-~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 329 SPDG-K-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred cCCC-C-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 1233 3 46789999999999988765432110 0 0000000 0000
Q ss_pred CCCcce------eEEE--------------------eeec---CCCCCceEEEEEecCCcEEEEeccCCC-CceeeeecC
Q 017296 202 KGRGMC------MAVQ--------------------AYLP---SKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKVH 251 (374)
Q Consensus 202 ~~~~~~------~~~~--------------------~~~~---~~~~~~~~~~~gs~dg~i~iwdl~~~~-~~~~~~~~h 251 (374)
+...++ .++. .|.+ ..++....++.|.+||.|++|.+.... .....+..|
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h 486 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH 486 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc
Confidence 000000 0000 0000 001223358889999999999996533 233356679
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC-
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG- 330 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~- 330 (374)
..+|++++++|++.+|+++...+.+.+||+..... ....+..|...|.+++|+|+.+++|+|+.|-.|.||+++.+
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 99999999999999999999999999999975432 33456678889999999999999999999999999999765
Q ss_pred eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 331 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.+....+|...|+.|+|- |...|+|+++|..||+|++.
T Consensus 564 ~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 KHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred hheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 3355556899889999995 56789999999999999985
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=228.71 Aligned_cols=288 Identities=23% Similarity=0.417 Sum_probs=214.3
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+.++++|.++|++++|+|++++|++++.|+.+++||..+++....+..|.. .+..+.+.+ +++.+++++.|+.|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--PVRDVAASA--DGTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc--ceeEEEECC--CCCEEEEEcCCCeEEE
Confidence 467889999999999999999999999999999999988776666655543 355677776 4478999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
||+.+++... .......... +.. +.+ + ..++++++.
T Consensus 78 ~~~~~~~~~~----~~~~~~~~i~--------------------~~~------------------~~~-~-~~~~~~~~~ 113 (289)
T cd00200 78 WDLETGECVR----TLTGHTSYVS--------------------SVA------------------FSP-D-GRILSSSSR 113 (289)
T ss_pred EEcCcccceE----EEeccCCcEE--------------------EEE------------------EcC-C-CCEEEEecC
Confidence 9998753210 1100000000 000 001 1 124555666
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
++.+++||+++++....+..+ .....++ .+.+. ...+++++.||.|++||++. ......+..
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~----------~~~i~~~---~~~~~----~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~ 175 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGH----------TDWVNSV---AFSPD----GTFVASSSQDGTIKLWDLRT-GKCVATLTG 175 (289)
T ss_pred CCeEEEEECCCcEEEEEeccC----------CCcEEEE---EEcCc----CCEEEEEcCCCcEEEEEccc-cccceeEec
Confidence 899999999987766555421 0111111 23222 22466667799999999975 345666778
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
|..++.++.+++++..+++++.|+.+++||++... . ...+..+...+.+++|+|++.++++++.|+.|++||+.++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK--C--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCc--e--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 88899999999998889999999999999996432 1 2223345567999999999989998888999999999988
Q ss_pred eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 331 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98888999999999999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=222.99 Aligned_cols=287 Identities=22% Similarity=0.293 Sum_probs=200.0
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..|.||+.+++.|.|+.+|.+|+|++.|.++.||-...|+.+.++.+|... |-++..+. +..++++|+.|.++|+|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~--~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDW--DSKHLITGSADQTAKLW 79 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecC--CcceeeeccccceeEEE
Confidence 478999999999999999999999999999999999999999999999754 55555443 55799999999999999
Q ss_pred ecCCCCCCCCCceeeeecc-eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc--
Q 017296 92 DIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-- 168 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (374)
|+++|++... .+... ...+ + +.. +..+++++.
T Consensus 80 Dv~tGk~la~----~k~~~~Vk~~----------------------~------------------F~~-~gn~~l~~tD~ 114 (327)
T KOG0643|consen 80 DVETGKQLAT----WKTNSPVKRV----------------------D------------------FSF-GGNLILASTDK 114 (327)
T ss_pred EcCCCcEEEE----eecCCeeEEE----------------------e------------------ecc-CCcEEEEEehh
Confidence 9999965321 11100 0000 0 000 111111111
Q ss_pred --cCCCeEEEEecCCC-------ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 169 --EQLSEVEIWDLNTA-------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 169 --~~d~~i~vWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+..+.|.++|++.. ++...++.+. . . ... ..+.. ....+++|.+||.|.+||++
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--------s--k-it~---a~Wg~---l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--------S--K-ITS---ALWGP---LGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCCc--------c--c-eee---eeecc---cCCEEEEecCCCcEEEEEcc
Confidence 12346888888732 2333333211 0 0 001 11111 11258999999999999999
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
+....+..-+.|...|+.+.+.++...++++|.|.+.++||+..-+ ..+..... ..+.+++++|.-..++.||..
T Consensus 178 ~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~----v~Kty~te-~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 178 TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE----VLKTYTTE-RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred cCceeeechhhhccccccccccCCcceEEecccCccceeeecccee----eEEEeeec-ccccceecccccceEEecCCc
Confidence 7655566667899999999999999999999999999999986432 22233322 358999999976666665543
Q ss_pred Ce--EEEEEccCC------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 320 RR--VRIYNYRKG------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 320 g~--v~iwd~~~~------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.- |--=..+.| +.+...++|.++|++|||+|+|+..+||++||.||+--+
T Consensus 253 eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 253 EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 22 221111222 335678999999999999999999999999999999644
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=237.72 Aligned_cols=232 Identities=21% Similarity=0.426 Sum_probs=185.5
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
-.++|+|+.+ |+..++||..|.+|+|||.++-.++..+.+|.. .+.|+-++ .+.++||++|.|||+||+++|
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG--SVLCLqyd----~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG--SVLCLQYD----ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCC--cEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence 4688999999 677899999999999999998888889989874 36677664 368999999999999999998
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
+... + .+|+|.. .+.
T Consensus 268 e~l~-------t-lihHcea--------------------------------------------------------VLh- 282 (499)
T KOG0281|consen 268 EPLN-------T-LIHHCEA--------------------------------------------------------VLH- 282 (499)
T ss_pred chhh-------H-Hhhhcce--------------------------------------------------------eEE-
Confidence 5321 1 1111100 000
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC--CceeeeecCccC
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEP 254 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~--~~~~~~~~h~~~ 254 (374)
+ .|. .+ .+++.|.|.+|++||+..+. ..+..+.||...
T Consensus 283 -----------l-----------------------rf~----ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 283 -----------L-----------------------RFS----NG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred -----------E-----------------------EEe----CC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 0 010 11 47889999999999997653 234457799999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
|+.+.|+.+ +++++|.|.+|++|++.+ +.+...+++|+.+|.++.+. +++++||+.|.+|++||...|.++.
T Consensus 323 VNvVdfd~k--yIVsASgDRTikvW~~st----~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 323 VNVVDFDDK--YIVSASGDRTIKVWSTST----CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred eeeeccccc--eEEEecCCceEEEEeccc----eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHH
Confidence 999999865 689999999999999853 34456677888888877665 8899999999999999999999999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.++||++-|.++.| |.+.++||+-||+||+||+..
T Consensus 395 vLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 395 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred HHhchHHhhhheee--cCceeeeccccceEEEEeccc
Confidence 99999999999999 778999999999999999854
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=237.03 Aligned_cols=286 Identities=17% Similarity=0.289 Sum_probs=211.8
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
+-+|..|+|.|+|+.|++|+..|.+.+|+..+--.-..++.|. ..|.++.++. ++.+++||..||+||+|+..-+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence 4589999999999999999999999999974322222344565 3477788877 56899999999999999986431
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
++....|.. +...+. .+.+.+. .++++++|++|+||
T Consensus 172 --------Vk~~~ahh~----------------eaIRdl------------------afSpnDs--kF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 172 --------VKIIQAHHA----------------EAIRDL------------------AFSPNDS--KFLTCSDDGTIKIW 207 (464)
T ss_pred --------hHHhhHhhh----------------hhhhee------------------ccCCCCc--eeEEecCCCeEEEE
Confidence 111111100 000000 0112222 35678899999999
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
|....+....+..+.. ..+ + + ...| ...++++|+.|+.|++||.++ +.++.++.+|...|..
T Consensus 208 df~~~kee~vL~GHgw--------dVk--s--v-dWHP----~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 208 DFRMPKEERVLRGHGW--------DVK--S--V-DWHP----TKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLA 269 (464)
T ss_pred eccCCchhheeccCCC--------Ccc--e--e-ccCC----ccceeEEccCCceeEeecCCC-cchhhhhhhccceEEE
Confidence 9887665455543311 111 0 0 1222 233699999999999999997 5567888999999999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
+.|.+.++.|+++|.|..++++|++..... ...+.|...+.+++++| ...++.+||+||.|..|.+...+++..+
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKEL----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhHHH----HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 999999999999999999999999733221 23456778899999999 5778999999999999999755665544
Q ss_pred -cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 337 -KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 337 -~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.+|...|++++|+|=|.+|+|||.|.++|+|.-.+|.
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 4799999999999999999999999999999876653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=210.95 Aligned_cols=287 Identities=16% Similarity=0.283 Sum_probs=207.4
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
|.+....|.+|+++|+++.|+.+|++.+|++.|.+|++||...|.++++..+|... +.-.+.+. |...++++|.|+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~GgDk 81 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGGDK 81 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCCCc
Confidence 33577889999999999999999999999999999999999999999999888644 65555544 557899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.+.+||+.+|++.+. ...|...+ +...++ ...-+++
T Consensus 82 ~v~vwDV~TGkv~Rr-------~rgH~aqV--------NtV~fN-----------------------------eesSVv~ 117 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRR-------FRGHLAQV--------NTVRFN-----------------------------EESSVVA 117 (307)
T ss_pred eEEEEEcccCeeeee-------ccccccee--------eEEEec-----------------------------CcceEEE
Confidence 999999999975431 11111100 001111 0112578
Q ss_pred cccCCCeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+|+-|.++++||-++.. +++.+.. .....+.+.+ ....+++||.||++|.||+|....
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v---------~~heIvaGS~DGtvRtydiR~G~l- 177 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV---------AEHEIVAGSVDGTVRTYDIRKGTL- 177 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe---------cccEEEeeccCCcEEEEEeeccee-
Confidence 89999999999988753 3333321 1111222211 112589999999999999997421
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC--eEEEEECCCCCEEEEEeCCCeE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG--ISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.......||+|++|+++++..+.++.|++++|-|-++ ++.+ ...+.|... -...+|+.....+++|++||.|
T Consensus 178 --~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t--GklL--~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 178 --SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET--GKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred --ehhhcCCcceeEEecCCCCEEEEeeccceeeecccch--hHHH--HHhcccccceeeeeeeecccceeEEeccCCceE
Confidence 2234678999999999999999999999999987653 3221 222233221 2345677777889999999999
Q ss_pred EEEEccCCeEEEEecccCCc-eEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 323 RIYNYRKGSALAILKYHHAT-CNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+||+.+...+..+..|... |.+++++|.-..++++. ++.+.+|-
T Consensus 252 y~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 252 YFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99999999999889877776 88999999877666655 45566663
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=220.86 Aligned_cols=313 Identities=41% Similarity=0.701 Sum_probs=217.7
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|.||.|..+|++|.+.|+++.|-.++. |++|..-|.|++|++.+.+.+..+.++.. ..+..+-.-+ +..+.+-+.
T Consensus 1 ~~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p---~d~l~tqgR 75 (323)
T KOG0322|consen 1 MVPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP---NDSLDTQGR 75 (323)
T ss_pred CCCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC---CcchhhcCC
Confidence 578899999999999999999976554 99999999999999988776555442211 1122222222 257889999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCC-CcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
|..+.+|++..+..... ..+..++.++|..++.+.+.........+ ..+..... . +. +..
T Consensus 76 d~~L~lw~ia~s~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~------------~-D~---g~~- 136 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK------------Q-DG---GDT- 136 (323)
T ss_pred CceEEEEEccCcceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhh------------h-cc---Ccc-
Confidence 99999999987643211 12334566777777665443320000000 00111000 0 00 000
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
-.+++=|-+. ..++....+.. ..+. | .....+++|+++|.+.+||+.....
T Consensus 137 --------tqv~i~dd~~---~~Klgsvmc~~-~~~~------c-----------~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 137 --------TQVQIADDSE---RSKLGSVMCQD-KDHA------C-----------GSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred --------ceeEccCchh---ccccCceeeee-cccc------c-----------cceEEEEEeccCCeEEEEEccCCce
Confidence 0122211110 00111001100 0000 0 0012477899999999999976422
Q ss_pred c---------eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 244 P---------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 244 ~---------~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
. ......|..+|.++.+++.....++|+.+..+..|+++.+++.+....++.....++..+.+.||++++|
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence 1 2234568999999999988778899999999999999988888888888888889999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|||++||||..++.+++..++.|.+.|++++|+|+..++|.+|.|++|.+|+++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999975
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=214.98 Aligned_cols=287 Identities=18% Similarity=0.258 Sum_probs=212.9
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee--eeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+.+++|.+.|.+|+|+.+|..|++|+.|++++||+++.++...... +|. ..+..+++.+. ..+.+++++.|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~--~svdql~w~~~-~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT--DSVDQLCWDPK-HPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC--cchhhheeCCC-CCcceEEecCCceEE
Confidence 5678999999999999999999999999999999998776544332 343 34667777764 457899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||++.+++.. .+.....++ .+ ...+.+.+ +++++
T Consensus 91 ~wd~r~~k~~~----~i~~~~eni-----------------------------~i-----------~wsp~g~~-~~~~~ 125 (313)
T KOG1407|consen 91 IWDIRSGKCTA----RIETKGENI-----------------------------NI-----------TWSPDGEY-IAVGN 125 (313)
T ss_pred EEEeccCcEEE----EeeccCcce-----------------------------EE-----------EEcCCCCE-EEEec
Confidence 99999875421 111100000 00 00122234 45566
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|..|.+.|.++.+.....++....... .+. . .+ ..++.....|.|.|-.... -+++++++
T Consensus 126 kdD~it~id~r~~~~~~~~~~~~e~ne~--------------~w~-~--~n-d~Fflt~GlG~v~ILsyps-Lkpv~si~ 186 (313)
T KOG1407|consen 126 KDDRITFIDARTYKIVNEEQFKFEVNEI--------------SWN-N--SN-DLFFLTNGLGCVEILSYPS-LKPVQSIK 186 (313)
T ss_pred CcccEEEEEecccceeehhcccceeeee--------------eec-C--CC-CEEEEecCCceEEEEeccc-cccccccc
Confidence 6778999999987765554433211110 011 1 11 1456666789999988764 46789999
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
.|.....|+.|+|+++++|+||.|..+.|||++.-- |. ..+.....+|+.++||.||++||||++|..|-|=++++
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--C~--R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--CE--RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhh--hh--eeeccccCceEEEEeccCcceeeccCccceEEeEeccc
Confidence 999999999999999999999999999999986432 21 22334557899999999999999999999999999999
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeCC---------CcEEEecCC
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASED---------STVALWELY 370 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---------~~v~~W~~~ 370 (374)
|..+..++ +.++-.+|||+|...+||.+..| |+||++-+.
T Consensus 263 Gd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 263 GDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99998886 78899999999999999988755 678887653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=238.01 Aligned_cols=183 Identities=20% Similarity=0.381 Sum_probs=147.7
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
..+.+++|+..+.++++++... ..++. .|.| +..++++|...|.+.+||+.+. ..+.+.+
T Consensus 392 a~~SikiWn~~t~kciRTi~~~------------y~l~~---~Fvp----gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~ 451 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG------------YILAS---KFVP----GDRYIVLGTKNGELQVFDLASA-SLVETIR 451 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc------------cEEEE---EecC----CCceEEEeccCCceEEEEeehh-hhhhhhh
Confidence 3468999999999999988531 12221 2443 3346999999999999999863 3456677
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC---CeE--EE----EEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST---GSC--VI----KKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~---~~~--~~----~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
.|.+.|..++..|++..+++||.|.+|++||+.... +.. .+ ...+.. ...+.++.+|||++++|.+-.|.
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccC
Confidence 899999999999999999999999999999985211 111 01 011222 24689999999999999999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+|+||-+.+.++.-.+.||.-+|.|+.+|||+++++|||+|.+||+|-++-++
T Consensus 531 TVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred eEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 99999999999999999999999999999999999999999999999886543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=218.81 Aligned_cols=290 Identities=20% Similarity=0.304 Sum_probs=214.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.-+.+|..|+++|.+++.+|+.++++||+.|..-.||+..+|..+..+.+|.. .|.++.|+. ++.+|+||.-+|.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD--SVt~~~Fsh--dgtlLATGdmsG~v 130 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD--SVTCCSFSH--DGTLLATGDMSGKV 130 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCC--ceEEEEEcc--CceEEEecCCCccE
Confidence 35678999999999999999999999999999999999999998888888864 488999987 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+||++.++... +.+. .+.. ++++- ...+ ...++++|
T Consensus 131 ~v~~~stg~~~--------------~~~~------------~e~~---dieWl--------------~WHp-~a~illAG 166 (399)
T KOG0296|consen 131 LVFKVSTGGEQ--------------WKLD------------QEVE---DIEWL--------------KWHP-RAHILLAG 166 (399)
T ss_pred EEEEcccCceE--------------EEee------------cccC---ceEEE--------------Eecc-cccEEEee
Confidence 99999987421 0000 0000 00000 0011 12467889
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.+=+|.+.+......+..+.. + .....|.|+ | .++++|+.||+|++||+++. .++..+
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~--------~-----ct~G~f~pd---G-Kr~~tgy~dgti~~Wn~ktg-~p~~~~ 228 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNS--------P-----CTCGEFIPD---G-KRILTGYDDGTIIVWNPKTG-QPLHKI 228 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCC--------C-----cccccccCC---C-ceEEEEecCceEEEEecCCC-ceeEEe
Confidence 9999999999998655555543211 1 111234443 3 37999999999999999763 333322
Q ss_pred ec---------------------------------------------------CccCeEEEEE---ecCCCceEEEecCC
Q 017296 249 KV---------------------------------------------------HLEPVLCLSI---DESCNGGISGGADQ 274 (374)
Q Consensus 249 ~~---------------------------------------------------h~~~v~~~~~---~~~~~~~~s~s~D~ 274 (374)
++ +.+.+.|+.+ +...+..|.|+-||
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 20 1111122222 22233447789999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL 354 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 354 (374)
+|.|||+...+.+... .|..+|..+.|-+ ..+|++++.||+|+.||.++|+...++.+|...|..++++|+.++
T Consensus 309 ~i~iyD~a~~~~R~~c-----~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHIC-----EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred eEEEEecccchhheec-----cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence 9999999765433322 2556799999999 779999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEecCC
Q 017296 355 MASASEDSTVALWELY 370 (374)
Q Consensus 355 las~s~D~~v~~W~~~ 370 (374)
++|+|.|++.+++...
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=242.47 Aligned_cols=303 Identities=17% Similarity=0.240 Sum_probs=220.7
Q ss_pred CeEEeecCCCceeEEEE-eCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHRASVTDVCF-HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~-~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+...+.|..+.|.+++| .|+.++|+.++....+|+++..+..+. .+.+|.. .++++.... .+..++|||.|.++
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e--~vlSL~~~~--~g~llat~sKD~sv 389 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTE--AVLSLDVWS--SGDLLATGSKDKSV 389 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchh--heeeeeecc--cCcEEEEecCCceE
Confidence 44556788999999999 578899999999999999998777664 6667764 366666322 34689999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+|.++++.... ..+.....|...+ + .+. + ..++--+++++
T Consensus 390 ilWr~~~~~~~~---~~~a~~~gH~~sv------------------------g-ava----------~-~~~~asffvsv 430 (775)
T KOG0319|consen 390 ILWRLNNNCSKS---LCVAQANGHTNSV------------------------G-AVA----------G-SKLGASFFVSV 430 (775)
T ss_pred EEEEecCCcchh---hhhhhhccccccc------------------------c-eee----------e-cccCccEEEEe
Confidence 999996542210 0111111110000 0 000 0 01112367888
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|.++++|++...+...... .....+....+.-...|.++ . ++...+++||+|.+.+||+++. .....++
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~-~~~~~~t~~aHdKdIN~Vai---a----~ndkLiAT~SqDktaKiW~le~-~~l~~vL 501 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPI-VLTCRYTERAHDKDINCVAI---A----PNDKLIATGSQDKTAKIWDLEQ-LRLLGVL 501 (775)
T ss_pred cCCceEEEecCCCcccccccc-eehhhHHHHhhcccccceEe---c----CCCceEEecccccceeeecccC-ceEEEEe
Confidence 899999999998733211100 00000011112222233332 1 2234689999999999999984 4557789
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.+|+..|.|+.|.+..+.++|+|.|.+||+|.+... .|+ +.+..|...|..+.|=.+++.++|++.||-+++|+++
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f--SCl--kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF--SCL--KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccc--eee--eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 999999999999998888999999999999999654 333 5567788889999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++++..++.+|...|++++-+|+...++||+.|+.|-+|.-
T Consensus 578 t~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 578 TNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred chhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999999999999999999999999999999999953
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=212.53 Aligned_cols=256 Identities=20% Similarity=0.293 Sum_probs=186.2
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
..++..|.||+..|..+..+++|++.+|+|.|+++++||+.+|++...+.+|.. .+.++++++ +.++++||+.|.|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--dVlsva~s~--dn~qivSGSrDkT 128 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--DVLSVAFST--DNRQIVSGSRDKT 128 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC--ceEEEEecC--CCceeecCCCcce
Confidence 468899999999999999999999999999999999999999998888888875 488999987 6689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++|++..+.. ..+..... ..-..|..+. |.....++++
T Consensus 129 iklwnt~g~ck-----~t~~~~~~------------------~~WVscvrfs------------------P~~~~p~Ivs 167 (315)
T KOG0279|consen 129 IKLWNTLGVCK-----YTIHEDSH------------------REWVSCVRFS------------------PNESNPIIVS 167 (315)
T ss_pred eeeeeecccEE-----EEEecCCC------------------cCcEEEEEEc------------------CCCCCcEEEE
Confidence 99999975421 11100000 0000111121 2222457888
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++||+||+++-+....+..+. .+. ....+.|+ | ...++|..||.+.+||++... .++.
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~------------~~v-~t~~vSpD---G-slcasGgkdg~~~LwdL~~~k-~lys 229 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHS------------GYV-NTVTVSPD---G-SLCASGGKDGEAMLWDLNEGK-NLYS 229 (315)
T ss_pred ccCCceEEEEccCCcchhhcccccc------------ccE-EEEEECCC---C-CEEecCCCCceEEEEEccCCc-eeEe
Confidence 9999999999999877655554321 111 11234443 3 257889999999999998744 4554
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-----CCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-----ERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
+ .|...|.+++|.|.... +....+..|++||++.+.....+..+... ....+.+++|++||+.|.+|..|+.|
T Consensus 230 l-~a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 L-EAFDIVNSLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred c-cCCCeEeeEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 4 68999999999998654 44556677999999865432223222222 23456789999999999999999999
Q ss_pred EEEEcc
Q 017296 323 RIYNYR 328 (374)
Q Consensus 323 ~iwd~~ 328 (374)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=227.75 Aligned_cols=300 Identities=21% Similarity=0.263 Sum_probs=212.8
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce---eeeeeeeeceeeeEEeccCCcccccee
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
.+-.|.+..++|..|++.|.-+.||++|++|+|||.|.+..+|+...... .+++.+|. ..|.-+.|+| |.++|
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--~~V~yi~wSP--DdryL 284 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--QPVSYIMWSP--DDRYL 284 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--CceEEEEECC--CCCeE
Confidence 34556788899999999999999999999999999999999999754332 45666665 3477788888 67899
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
++++.|..+++||+.+|.+...-.. ... + ...+. ...++
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~-----------------~~~----~--S~~sc------------------~W~pD 323 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPS-----------------GLG----F--SVSSC------------------AWCPD 323 (519)
T ss_pred EecCchHheeeccCCcchhhhhccc-----------------CcC----C--Cccee------------------EEccC
Confidence 9999999999999999864321000 000 0 00000 01123
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+.+ +++|+.|+++..||+.....-.- + + .......++++. .+|. .+++-..|..|++|+.+
T Consensus 324 g~~--~V~Gs~dr~i~~wdlDgn~~~~W--~----g----vr~~~v~dlait------~Dgk-~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 324 GFR--FVTGSPDRTIIMWDLDGNILGNW--E----G----VRDPKVHDLAIT------YDGK-YVLLVTVDKKIRLYNRE 384 (519)
T ss_pred Cce--eEecCCCCcEEEecCCcchhhcc--c----c----cccceeEEEEEc------CCCc-EEEEEecccceeeechh
Confidence 333 67899999999999875431100 0 0 000122233321 2343 46666789999999986
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC--CCeEEEEECC-CCCEEEEE
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER--PGISGTSIRP-DSKIAATA 316 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp-~~~~l~s~ 316 (374)
.. ..+. +.....+|++++++.++..++..-.+..+.+||++. .+... ...+|. ..+-.-||-- +..+++||
T Consensus 385 ~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e--~~lv~--kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 385 AR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE--NKLVR--KYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred hh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch--hhHHH--HhhcccccceEEEeccCCCCcceEEec
Confidence 52 2221 334567999999999999889999999999999973 22111 111221 1233346653 56899999
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPP 372 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~ 372 (374)
++|+.|.||+..+++++.++.||...|++|+|+|... ++||||.||+||||...++
T Consensus 459 SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 459 SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999999655 8999999999999998754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=214.53 Aligned_cols=289 Identities=20% Similarity=0.330 Sum_probs=207.6
Q ss_pred eEEeecCCCceeEEEEeC---CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 11 VAVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~---~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
..+..||+.+|..|+|+| +|=+|+|++.|+.-.+-+-.+|..+.++.+|..+ +-...+.. +-.+.+|++.|-+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~--na~~aasaaadft 82 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNK--NATRAASAAADFT 82 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCc--hhhhhhhhcccch
Confidence 357899999999999985 6778999999999999999999999999988644 33333322 2246789999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
-++||..+|.... + +..++..+..++ ..+..+ +++
T Consensus 83 akvw~a~tgdelh---------s-------f~hkhivk~~af----------------------------~~ds~~-llt 117 (334)
T KOG0278|consen 83 AKVWDAVTGDELH---------S-------FEHKHIVKAVAF----------------------------SQDSNY-LLT 117 (334)
T ss_pred hhhhhhhhhhhhh---------h-------hhhhheeeeEEe----------------------------cccchh-hhc
Confidence 9999998874211 0 011111111111 011122 456
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
|+.++.+||+|++..+.-..-.. ++....+... +... . ..+++.+.|++||+||.++ +..+++
T Consensus 118 gg~ekllrvfdln~p~App~E~~-------ghtg~Ir~v~-----wc~e--D--~~iLSSadd~tVRLWD~rT-gt~v~s 180 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPKEIS-------GHTGGIRTVL-----WCHE--D--KCILSSADDKTVRLWDHRT-GTEVQS 180 (334)
T ss_pred cchHHHhhhhhccCCCCCchhhc-------CCCCcceeEE-----Eecc--C--ceEEeeccCCceEEEEecc-CcEEEE
Confidence 77788999999987652111111 1111111111 1111 1 2488889999999999997 444555
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+. ...+|+++.+++++. +++-..-++|++||.+... +.+..+.. ..|.+.+++|+...+++|++|..++.||.
T Consensus 181 L~-~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~----~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFG----LLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred Ee-cCCCCcceeeccCCC-EEEEecCceeEEecccccc----ceeeccCc-cccccccccCCCceEEecCcceEEEEEec
Confidence 53 577999999999886 4677778899999986432 11222222 35888999999999999999999999999
Q ss_pred cCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 328 RKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 328 ~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+++.+..+ ++|.++|.+|.|+|||+..|+||+||+||||...+.
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999998886 899999999999999999999999999999988654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=237.73 Aligned_cols=250 Identities=20% Similarity=0.296 Sum_probs=198.7
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
..+++..|++.|.+|.|+|...+++++-..|.|.+||.++...+..+.. ....+.++.|-. .-+++++|+.|..||
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeee--ccceEEEecCCceEE
Confidence 3445667999999999999999999999999999999988777766643 334566666655 337899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+++.++++. ++....|
T Consensus 81 Vfnynt~ek-------V~~FeAH--------------------------------------------------------- 96 (794)
T KOG0276|consen 81 VFNYNTGEK-------VKTFEAH--------------------------------------------------------- 96 (794)
T ss_pred EEeccccee-------eEEeecc---------------------------------------------------------
Confidence 999987631 1000000
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
+..| +++ + ..| ..+.++++|+|-+|++||.++.=...+++.
T Consensus 97 -~DyI-----------R~i--------------------a---vHP----t~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 97 -SDYI-----------RSI--------------------A---VHP----TLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred -ccce-----------eee--------------------e---ecC----CCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 0011 111 1 111 123689999999999999987555678899
Q ss_pred cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEE
Q 017296 250 VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 250 ~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~v~iwd 326 (374)
||..-|.+++|.| +...++++|.|++||+|.+...... ..+.+|..+|.++.|=| |..||+||+.|.+|+|||
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----eeeeccccCcceEEeccCCCcceEEecCCCceEEEee
Confidence 9999999999987 4567999999999999999755433 33557888999999865 567999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++..+++++.||...|+.+-|+|.=..++|||+||+||||+-.
T Consensus 214 yQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 214 YQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred cchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 99999999999999999999999999999999999999999753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=217.20 Aligned_cols=308 Identities=20% Similarity=0.294 Sum_probs=210.2
Q ss_pred CCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCc-cccceeeeccc
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQGR 84 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~ 84 (374)
.||+|...+. |.+.|.+|... ++.++||+.||++++||. .|+....+.+|... +.++++-.. .....|+++|.
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcc--eeeeEEEecCCccceEEEecC
Confidence 4556665554 99999988876 789999999999999996 57888888888754 444443221 11236999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+++++|.++.++..... ++...+|-.. +. .+........
T Consensus 168 Dqtl~Lw~~~~~~~~~~~---~~~~~GHk~~---------------------------V~----------sVsv~~sgtr 207 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKA---LKVCRGHKRS---------------------------VD----------SVSVDSSGTR 207 (423)
T ss_pred CceEEEEEecCchhhhhH---HhHhcccccc---------------------------ee----------EEEecCCCCe
Confidence 999999999876421100 0000011000 00 0001112335
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCc-------------cCCCCCcCCCCC-cceeEEEeeecCCCCCceEEEEEecC
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNS-------------CGGSPNFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYED 230 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gs~d 230 (374)
+++|+.|.++++|+.++.. ..++.... ....+...-.+- .-++++ .+. + ...+++++.|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V-~w~-d----~~v~yS~SwD 280 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV-VWS-D----ATVIYSVSWD 280 (423)
T ss_pred EEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccCceEEecccccceeeE-EEc-C----CCceEeeccc
Confidence 7889999999999933221 11110000 000000000000 001111 121 1 2358899999
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD- 309 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 309 (374)
.+|+.||+...+. ..++. -..+++|+...+....+++||.|..|+|||-+...++.. ...+..|...|.++.++|.
T Consensus 281 HTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v-~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 281 HTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV-SQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred ceEEEEEeecccc-eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee-EEeeecchhhhhheecCCCC
Confidence 9999999987543 33332 356899999999888899999999999999987766655 3456678889999999995
Q ss_pred CCEEEEEeCCCeEEEEEccCCe-EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...++||+.|+++++||+++.+ +++.+.+|...|.++.|+ ++.+|+|||.|++++|+.-.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 4558999999999999999988 899999999999999995 77899999999999998653
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=237.56 Aligned_cols=293 Identities=24% Similarity=0.349 Sum_probs=219.1
Q ss_pred CeEEeecC-CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 10 PVAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 10 ~~~~l~gH-~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
...++.+| ...|.++.|+++|+.|++++.|+.+++|+....+ .+..+.+|. ..|..++|++ +++.+++++.|+
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~--d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSP--DGSYLLSGSDDK 225 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc--cceeeeEECC--CCcEEEEecCCc
Confidence 36677676 8999999999999999999999999999997666 555555665 4588899988 567999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+||+||+..+.. .+++...|...+ .+. .+.+.+ -+++
T Consensus 226 tiriwd~~~~~~------~~~~l~gH~~~v-----------------~~~------------------~f~p~g--~~i~ 262 (456)
T KOG0266|consen 226 TLRIWDLKDDGR------NLKTLKGHSTYV-----------------TSV------------------AFSPDG--NLLV 262 (456)
T ss_pred eEEEeeccCCCe------EEEEecCCCCce-----------------EEE------------------EecCCC--CEEE
Confidence 999999944311 112211111000 000 122222 3577
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-ce
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~-~~ 245 (374)
+|+.|++|+|||++++++...+..+. . ...+ ..|.++ + ..+++++.||.|++||+.+... +.
T Consensus 263 Sgs~D~tvriWd~~~~~~~~~l~~hs--------~--~is~---~~f~~d---~-~~l~s~s~d~~i~vwd~~~~~~~~~ 325 (456)
T KOG0266|consen 263 SGSDDGTVRIWDVRTGECVRKLKGHS--------D--GISG---LAFSPD---G-NLLVSASYDGTIRVWDLETGSKLCL 325 (456)
T ss_pred EecCCCcEEEEeccCCeEEEeeeccC--------C--ceEE---EEECCC---C-CEEEEcCCCccEEEEECCCCceeee
Confidence 89999999999999999888886431 1 1111 123332 2 2588889999999999987432 34
Q ss_pred eeeecCccC--eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC---CeEEEEECCCCCEEEEEeCCC
Q 017296 246 TAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP---GISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 246 ~~~~~h~~~--v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~s~~~dg 320 (374)
..+.++..+ +.++.|+|++.+++++..|+++++||+...... .....|.. .+.+..++++++++++|+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCc
Confidence 566666555 999999999999999999999999999754321 12222222 344556688999999999999
Q ss_pred eEEEEEccCCeEEEEeccc-CCceEEEEEeCCCCEEEEEe--CCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASAS--EDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~las~s--~D~~v~~W~~~ 370 (374)
.|.+||..++..+..+.+| ...+..++++|...++++++ .|+.+++|...
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999989999999 88999999999999999998 79999999764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=202.44 Aligned_cols=272 Identities=17% Similarity=0.258 Sum_probs=201.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
.+..+++-..+.|+.|+..|+++.|++|+. ..||++|+.++. ++.++.+|.. .|.++.|.. ++++++|||+||
T Consensus 31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k--NVtaVgF~~--dgrWMyTgseDg 105 (311)
T KOG0315|consen 31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK--NVTAVGFQC--DGRWMYTGSEDG 105 (311)
T ss_pred eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCC--ceEEEEEee--cCeEEEecCCCc
Confidence 456666666788999999999999999885 789999998765 5777777753 488888876 679999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++||||++...+.+. + .+..+..+.... +++ --++
T Consensus 106 t~kIWdlR~~~~qR~--~-----------------------~~~spVn~vvlh-------------------pnQ-teLi 140 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRN--Y-----------------------QHNSPVNTVVLH-------------------PNQ-TELI 140 (311)
T ss_pred eEEEEeccCcccchh--c-----------------------cCCCCcceEEec-------------------CCc-ceEE
Confidence 999999987432110 0 000000010111 111 1256
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-----
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----- 241 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~----- 241 (374)
+|.+++.|++||+.+..+...+.... ....+. . ... +.+ ..++.+.+.|...+|++-..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~-------~~~i~s--l---~v~---~dg-sml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPED-------DTSIQS--L---TVM---PDG-SMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCC-------Ccceee--E---EEc---CCC-cEEEEecCCccEEEEEccCCCcccc
Confidence 78889999999999876544432210 000111 1 111 123 35777888899999998431
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
-.|+..++.|..-+....++|+..+++++|.|.++++|+.+.. ..+...+..|+..++..+||-|++||++|+.|++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 2356678889999999999999999999999999999998754 3445566778889999999999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceEEEEEe
Q 017296 322 VRIYNYRKGSALAILKYHHATCNAVSFS 349 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h~~~v~~v~~s 349 (374)
+|+|++..++.+..+++|.....+++..
T Consensus 282 ~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999998887777753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=226.12 Aligned_cols=252 Identities=23% Similarity=0.413 Sum_probs=177.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
...+.+|.||+++|.|+.| +.++++|||.|.+|+|||.++|+++.++.+|-. .+.-+.|+. .+++|++.|.+
T Consensus 227 ~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHce--aVLhlrf~n----g~mvtcSkDrs 298 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE--AVLHLRFSN----GYMVTCSKDRS 298 (499)
T ss_pred HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcc--eeEEEEEeC----CEEEEecCCce
Confidence 3567789999999999999 566999999999999999999999998877754 466666654 68999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++||+.+..-++ ..+..-+|..+ +. ....+.+| +++
T Consensus 299 iaVWdm~sps~it----~rrVLvGHrAa----------------------------VN----------vVdfd~ky-IVs 335 (499)
T KOG0281|consen 299 IAVWDMASPTDIT----LRRVLVGHRAA----------------------------VN----------VVDFDDKY-IVS 335 (499)
T ss_pred eEEEeccCchHHH----HHHHHhhhhhh----------------------------ee----------eeccccce-EEE
Confidence 9999998653110 00000011000 00 00122344 556
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|.+|++|++.+++.++++..+. ++.. ...+ ....+++||.|.+|++||++. +..+..
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHk-----------RGIA--ClQY------r~rlvVSGSSDntIRlwdi~~-G~cLRv 395 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHK-----------RGIA--CLQY------RDRLVVSGSSDNTIRLWDIEC-GACLRV 395 (499)
T ss_pred ecCCceEEEEeccceeeehhhhccc-----------ccce--ehhc------cCeEEEecCCCceEEEEeccc-cHHHHH
Confidence 6678999999999999888886541 1211 1111 112588899999999999986 567888
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
++||.+-|.|+.|+.+. +++|+.||.|++||+.... |.+..+ +++
T Consensus 396 LeGHEeLvRciRFd~kr--IVSGaYDGkikvWdl~aal-----------------------dpra~~-----~~~----- 440 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAAL-----------------------DPRAPA-----STL----- 440 (499)
T ss_pred HhchHHhhhheeecCce--eeeccccceEEEEeccccc-----------------------CCcccc-----cch-----
Confidence 99999999999997643 5777777777777764210 000000 111
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++.++-.|.+.|..+.| |...+++++.|.+|-|||+.+
T Consensus 441 ----Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 441 ----CLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ----HHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 23345568999999999 778999999999999999954
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=218.59 Aligned_cols=279 Identities=15% Similarity=0.284 Sum_probs=210.3
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
...|++|+|+.+|.+|++|+.||.+++|+. .|..+.++..|. ..|.++-+.. .+++++|++-|+++.+||.-+|+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~Hk--gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHK--GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccC--CceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 468999999999999999999999999996 466667766665 4588888876 67899999999999999998774
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
+.. ...+|- .+ ..++++.. ..-+++.+.|+.|+|.
T Consensus 310 ~~q-------~f~~~s-----------------~~--~lDVdW~~-------------------~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 310 VKQ-------QFEFHS-----------------AP--ALDVDWQS-------------------NDEFATSSTDGCIHVC 344 (524)
T ss_pred EEE-------eeeecc-----------------CC--ccceEEec-------------------CceEeecCCCceEEEE
Confidence 311 000000 00 00111100 0124566678899999
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
-+....+..++..+. +...+ ..+.+. + .+|+++|.|++++||.+.. ......+++|...|..
T Consensus 345 kv~~~~P~~t~~GH~----------g~V~a---lk~n~t---g-~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 345 KVGEDRPVKTFIGHH----------GEVNA---LKWNPT---G-SLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYT 406 (524)
T ss_pred EecCCCcceeeeccc----------CceEE---EEECCC---C-ceEEEecCCCeeEeeecCC-Ccchhhhhhhccceee
Confidence 887776666665432 11111 123322 2 3688999999999999865 4556778899999999
Q ss_pred EEEecCCC---------ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 258 LSIDESCN---------GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 258 ~~~~~~~~---------~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.++|.+. .+++++.|+++++||+......+. +..|+..|++++|+|+++|+|+|+.||.|.+|+.+
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~----f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT----LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe----eccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 99977653 468999999999999976543333 44577889999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+++.++.+.+ .+.|..|.|+-+|.+|..+-.|+.+++-|+
T Consensus 483 ~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 483 TGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred chheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 9999988874 557999999999999998888999998775
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=224.60 Aligned_cols=292 Identities=20% Similarity=0.291 Sum_probs=214.6
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|......+.-|.+.|..+.|-+....|++|+.|..|++|+....+ .+.++.+- ...+..+.+.+ ++.++++++.
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs--~g~it~~d~d~--~~~~~iAas~ 239 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGS--LGNITSIDFDS--DNKHVIAASN 239 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhcc--CCCcceeeecC--CCceEEeecC
Confidence 456677889999999999999988999999999999999986554 23343332 23477777776 5689999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+.+|+|++...+... +..+|...+...+.. .. ..-
T Consensus 240 d~~~r~Wnvd~~r~~~-------TLsGHtdkVt~ak~~-----------------------------------~~--~~~ 275 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRH-------TLSGHTDKVTAAKFK-----------------------------------LS--HSR 275 (459)
T ss_pred CCceeeeeccchhhhh-------hhcccccceeeehhh-----------------------------------cc--ccc
Confidence 9999999998765322 222222211111100 00 112
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++|+.|.+|++||+....|..++... ..+.-.+.. ...+++|..|+.||+||.+.+. +
T Consensus 276 vVsgs~DRtiK~WDl~k~~C~kt~l~~---------S~cnDI~~~-----------~~~~~SgH~DkkvRfwD~Rs~~-~ 334 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKAYCSKTVLPG---------SQCNDIVCS-----------ISDVISGHFDKKVRFWDIRSAD-K 334 (459)
T ss_pred eeeccccchhhhhhhhhhheecccccc---------ccccceEec-----------ceeeeecccccceEEEeccCCc-e
Confidence 788999999999999987765544321 111111111 1247889999999999998754 3
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
......+. .|+++....++..+++++.|.++++.|+....-.+.+..+--...+..+.+.|||++.|+|+|+.||.|+|
T Consensus 335 ~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 335 TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 44444444 99999999999999999999999999998654333333221112234778999999999999999999999
Q ss_pred EEccCCeEEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 325 YNYRKGSALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
|++.++++-+.+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999998877765443 699999999999999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=224.11 Aligned_cols=295 Identities=22% Similarity=0.348 Sum_probs=218.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCC-CcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D-~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++.|.--..+|..++|+..|..|+-|+.. |.+.||+..+-.-+...++|.. .+.++++++ |++.+++|+.||.
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSp--Dgq~iaTG~eDgK 373 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSP--DGQLIATGAEDGK 373 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECC--CCcEEEeccCCCc
Confidence 4666777777899999999999999988755 7999999987767777778864 488888887 7899999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
||+||..+|-| +.+..-|...+..+ . +. ..+..+++
T Consensus 374 VKvWn~~SgfC-------~vTFteHts~Vt~v-----------------~------------------f~--~~g~~lls 409 (893)
T KOG0291|consen 374 VKVWNTQSGFC-------FVTFTEHTSGVTAV-----------------Q------------------FT--ARGNVLLS 409 (893)
T ss_pred EEEEeccCceE-------EEEeccCCCceEEE-----------------E------------------EE--ecCCEEEE
Confidence 99999988732 22211111100000 0 00 11235667
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC-cEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg-~i~iwdl~~~~~~~~ 246 (374)
++-||+|+.||+...++-+++..+. +..-.|+++ + +.| ..+.+|+.|. .|.+|++.+ ++.+.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~---------p~Qfscvav-----D-~sG-elV~AG~~d~F~IfvWS~qT-GqllD 472 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPE---------PIQFSCVAV-----D-PSG-ELVCAGAQDSFEIFVWSVQT-GQLLD 472 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCC---------ceeeeEEEE-----c-CCC-CEEEeeccceEEEEEEEeec-Ceeee
Confidence 7889999999999988777775421 111123332 1 112 2456677774 599999986 66788
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.+.||..||.+++|++.+..++++|-|.+||+||+=.+.+... ++. ..+.+..++|+|+|+-|+++..||.|.+||
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE---tl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE---TLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee---eEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 8999999999999999999999999999999999855433221 121 235689999999999999999999999999
Q ss_pred ccCCeEEEEecc--------------------cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRKGSALAILKY--------------------HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~~~~~~~~~~--------------------h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+.+.+...+.+ -.....++.+++||+.|.+|+..+.|+|+++.+.
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 987665433221 1246788999999999999999999999988643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=227.32 Aligned_cols=292 Identities=20% Similarity=0.375 Sum_probs=219.1
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..+.||+..|+.++|+.+...++||+ .+.+++|+..+.+++.++.- ..+.+..|.| +++++++|...|.+.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvp--gd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVP--GDRYIVLGTKNGELQVF 439 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecC--CCceEEEeccCCceEEE
Confidence 45679999999999999888888876 57999999999999988642 2566777776 66899999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|+.+..... .++++.+.++.+.+ .+++.. +++|+.|
T Consensus 440 dlaS~~l~E----ti~AHdgaIWsi~~--------------------------------------~pD~~g--~vT~saD 475 (888)
T KOG0306|consen 440 DLASASLVE----TIRAHDGAIWSISL--------------------------------------SPDNKG--FVTGSAD 475 (888)
T ss_pred Eeehhhhhh----hhhccccceeeeee--------------------------------------cCCCCc--eEEecCC
Confidence 998764321 11122221211111 122222 4567778
Q ss_pred CeEEEEecCCC-----c--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 172 SEVEIWDLNTA-----E--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 172 ~~i~vWd~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
++|++||..-- . ....+.+. .........+|.. ++| ++ .+++.+--|++|++|-+.+-..
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~-----rtLel~ddvL~v~---~Sp---dg-k~LaVsLLdnTVkVyflDtlKF- 542 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHT-----RTLELEDDVLCVS---VSP---DG-KLLAVSLLDNTVKVYFLDTLKF- 542 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccc-----eEEeccccEEEEE---EcC---CC-cEEEEEeccCeEEEEEecceee-
Confidence 99999985321 0 11111110 0011112334433 222 23 3678888999999999976433
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
.-.+-||.-||.||.++++...++|||.|.+|++|-++.+.+. +.+-+|++.|.++.|-|....+.++|.|+.|+-
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH----KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH----KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh----hhhhcccCceeEEEEcccceeEEEecCcceEEe
Confidence 4457799999999999999999999999999999999876543 344568889999999999999999999999999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
||-...+.++++.+|...|++++.+|+|.+++|+|.|.+||+|.-++
T Consensus 619 WDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 619 WDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred echhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999999997643
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=215.91 Aligned_cols=263 Identities=19% Similarity=0.295 Sum_probs=192.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
+....|+||+++|..|+|+..|++|+|+|.|-.+++||..+ .+++..+.+|. |.+.++.+-|. +++++|++.|.+
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~--h~vS~V~f~P~--gd~ilS~srD~t 216 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE--HGVSSVFFLPL--GDHILSCSRDNT 216 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc--cceeeEEEEec--CCeeeecccccc
Confidence 45678999999999999999999999999999999999876 45677766665 66888888774 589999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|+.|++.+|-+ +++...|.. ....+. +.....++++
T Consensus 217 ik~We~~tg~c-------v~t~~~h~e-------------------------wvr~v~------------v~~DGti~As 252 (406)
T KOG0295|consen 217 IKAWECDTGYC-------VKTFPGHSE-------------------------WVRMVR------------VNQDGTIIAS 252 (406)
T ss_pred eeEEeccccee-------EEeccCchH-------------------------hEEEEE------------ecCCeeEEEe
Confidence 99999998732 221111100 000000 1112357888
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCC-CcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
++.|+++++|-++++++...+..++.+.+. .+.+... +. .+ ........+...+++++.|++||+||+.. +..+.
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~-~i-~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~ 328 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YP-SI-SEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLF 328 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Cc-ch-hhccCCCCCccEEEeecccceEEEEeccC-CeEEE
Confidence 999999999999998765555443321110 0000000 00 00 00011112334688999999999999986 46788
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
++.+|.+.|..++|+|.|.+++++..|+++++||++.. +|+ ..+..|...++++.|+.+..++++|+-|.++++|.
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cm--k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCM--KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eee--eccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 89999999999999999999999999999999999643 444 33457788899999999999999999999999997
Q ss_pred c
Q 017296 327 Y 327 (374)
Q Consensus 327 ~ 327 (374)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=229.78 Aligned_cols=284 Identities=22% Similarity=0.382 Sum_probs=213.6
Q ss_pred CCeEEeec-CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee-eeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~g-H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+....+.+ |...|.+..|+ +..+++++.|.++.+||..+++.+.. +.+|.. ++-++++.. .++.+++|+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g--~V~~l~~~~--~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 198 RGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG--GVWGLAFPS--GGDKLVSGSTDK 271 (537)
T ss_pred ccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCC--CceeEEEec--CCCEEEEEecCC
Confidence 34455665 66777888887 77899999999999999999998877 888864 466666653 357999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++|+||+.+|.+.. ...+|...+... ....++.+
T Consensus 272 t~rvWd~~sg~C~~-------~l~gh~stv~~~---------------------------------------~~~~~~~~ 305 (537)
T KOG0274|consen 272 TERVWDCSTGECTH-------SLQGHTSSVRCL---------------------------------------TIDPFLLV 305 (537)
T ss_pred cEEeEecCCCcEEE-------EecCCCceEEEE---------------------------------------EccCceEe
Confidence 99999999986532 111111111100 01134567
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+|+.|.+|++|++++++++..+..+ . ....++. + +...+++|+.|++|++||++. ...+.
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~h--------~--~~V~~v~---~------~~~~lvsgs~d~~v~VW~~~~-~~cl~ 365 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRGH--------T--GPVNCVQ---L------DEPLLVSGSYDGTVKVWDPRT-GKCLK 365 (537)
T ss_pred eccCCceEEEEeccCcceEEEeccc--------c--ccEEEEE---e------cCCEEEEEecCceEEEEEhhh-ceeee
Confidence 7899999999999999988877532 1 1111211 1 123699999999999999985 67899
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.+++|...|.++.+++. ..+++|+.|++|++||++... .|. ..+..|...+.. +...++++++++.|++|++||
T Consensus 366 sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-~c~--~tl~~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 366 SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-KCI--HTLQGHTSLVSS--LLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-hhh--hhhcCCcccccc--cccccceeEeccccccEEEee
Confidence 99999999999999875 568999999999999998652 222 223344444433 344577899999999999999
Q ss_pred ccCCeEEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
..+++++.++.+ |...|..+++. .+.++.++.|+++++||+..+
T Consensus 440 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 440 AEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 999999999998 67899988876 467889999999999998653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=201.39 Aligned_cols=285 Identities=19% Similarity=0.352 Sum_probs=202.5
Q ss_pred eEEEEeC--CCCE-EEEec-----CCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 22 TDVCFHQ--TKPI-LFAGT-----TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 22 ~~l~~~~--~~~~-l~s~s-----~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
+++.|+| ++++ ++++. -.|.+.|-+...++.+..........+...++++.+ ..+++++++.||++|+||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 5689998 3333 23332 347888888865555555444444455777888875 4589999999999999995
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
.... .|....+.+. ...+..+.+ .-.+..+++++.|++
T Consensus 91 ~~~s---~Pi~~~kEH~----------------------~EV~Svdwn-----------------~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 91 TMPS---KPIHKFKEHK----------------------REVYSVDWN-----------------TVRRRIFLTSSWDGT 128 (311)
T ss_pred CCCC---cchhHHHhhh----------------------hheEEeccc-----------------cccceeEEeeccCCc
Confidence 3221 1111111100 001111111 111344566699999
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~ 253 (374)
||+||...++.+.++.++ ..|+....+.|..+ ..++++|.||++++||++.+++++. +..|..
T Consensus 129 iKLW~~~r~~Sv~Tf~gh-------------~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~ 191 (311)
T KOG0277|consen 129 IKLWDPNRPNSVQTFNGH-------------NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMS-IEAHNS 191 (311)
T ss_pred eEeecCCCCcceEeecCC-------------ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeE-EEeccc
Confidence 999999998888887543 23333334544322 2588999999999999999887666 778999
Q ss_pred CeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEccCC-
Q 017296 254 PVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKG- 330 (374)
Q Consensus 254 ~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~- 330 (374)
.+.|+.++. +...++||+.|+.|+.||++... ....++..|...|+.+.|||- ..+|||++.|-++||||...+
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999954 56678999999999999997532 123567788889999999996 447899999999999999754
Q ss_pred eEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 331 SALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
..+.+.+.|.+.|..+.||+ ++.++|++++|..+++|+-
T Consensus 269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 34567788999999999998 4559999999999999983
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=210.44 Aligned_cols=301 Identities=19% Similarity=0.302 Sum_probs=216.8
Q ss_pred eEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+..+.||...|+++.|-|.+. +++|||+|.+|.+++-.--+.-.++..|... +.++.++| |++.++|+|.||++-
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskF--V~~VRysP--DG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKF--VNCVRYSP--DGSRFATAGSDGKIY 215 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccc--eeeEEECC--CCCeEEEecCCccEE
Confidence 456789999999999998887 4999999999999984332322344445443 77888888 689999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
++|-.+|+... .+.....| .+.+... ...++++++ ++.+
T Consensus 216 iyDGktge~vg----~l~~~~aH---------------------------kGsIfal--------sWsPDs~~~--~T~S 254 (603)
T KOG0318|consen 216 IYDGKTGEKVG----ELEDSDAH---------------------------KGSIFAL--------SWSPDSTQF--LTVS 254 (603)
T ss_pred EEcCCCccEEE----EecCCCCc---------------------------cccEEEE--------EECCCCceE--EEec
Confidence 99998885211 01000000 0000000 011334443 3445
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|.++||||+.+.++..++..... ...+... ..++ ..+|++-+-+|+|.+++...+. ++..+.
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~---------v~dqqvG--~lWq-----kd~lItVSl~G~in~ln~~d~~-~~~~i~ 317 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGST---------VEDQQVG--CLWQ-----KDHLITVSLSGTINYLNPSDPS-VLKVIS 317 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCc---------hhceEEE--EEEe-----CCeEEEEEcCcEEEEecccCCC-hhheec
Confidence 578999999999998888764321 1111111 1222 1268999999999999998766 788899
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe------------------------------------------
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS------------------------------------------ 287 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~------------------------------------------ 287 (374)
||..+|++++.++++..+++|+.||.|.-|+...+..-
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccc
Confidence 99999999999999999999999999999997421100
Q ss_pred ------------E-------------------EEE-------------------------------------E-------
Q 017296 288 ------------C-------------------VIK-------------------------------------K------- 292 (374)
Q Consensus 288 ------------~-------------------~~~-------------------------------------~------- 292 (374)
. .++ .
T Consensus 398 ~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 398 KSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred ccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 0 000 0
Q ss_pred ----eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE-EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 293 ----EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 293 ----~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
....|+..++.++||||+.|||++...+.|-+||+.+.+. ...+.-|.+.|++++|+|+.+++||||-|.+|.||
T Consensus 478 ~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 0012445578899999999999999999999999987664 23455699999999999999999999999999999
Q ss_pred cCCCCC
Q 017296 368 ELYPPH 373 (374)
Q Consensus 368 ~~~~~~ 373 (374)
++..|.
T Consensus 558 sv~kP~ 563 (603)
T KOG0318|consen 558 SVKKPA 563 (603)
T ss_pred EccChh
Confidence 998774
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=227.37 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=166.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....+|.||+++|+.+.|+|+.++|+|+|+|+++|+|.+.+..++....+|... +-.+.|+| .|-+++|+|.|+|.
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P--~GyYFatas~D~tA 517 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAP--RGYYFATASHDQTA 517 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecC--CceEEEecCCCcee
Confidence 355679999999999999999999999999999999999999998888888754 44555776 46799999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+|........ + +.+|
T Consensus 518 rLWs~d~~~Pl-----R-----------------------------------------------------------ifag 533 (707)
T KOG0263|consen 518 RLWSTDHNKPL-----R-----------------------------------------------------------IFAG 533 (707)
T ss_pred eeeecccCCch-----h-----------------------------------------------------------hhcc
Confidence 99998753110 0 0000
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
-. . ..-| ..|.|+ ..++++||.|.+||+||..+ +..+..+
T Consensus 534 hl-s-------------------------------DV~c---v~FHPN----s~Y~aTGSsD~tVRlWDv~~-G~~VRiF 573 (707)
T KOG0263|consen 534 HL-S-------------------------------DVDC---VSFHPN----SNYVATGSSDRTVRLWDVST-GNSVRIF 573 (707)
T ss_pred cc-c-------------------------------ccce---EEECCc----ccccccCCCCceEEEEEcCC-CcEEEEe
Confidence 00 0 0000 123332 23688999999999999975 5668889
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.||..+|.+++|+|.+.++++|+.||.|++||+..+. +...+..|...+.++.||.+|..||+||.|.+|++||+.
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9999999999999999999999999999999996542 223455677889999999999999999999999999996
Q ss_pred C
Q 017296 329 K 329 (374)
Q Consensus 329 ~ 329 (374)
.
T Consensus 650 ~ 650 (707)
T KOG0263|consen 650 K 650 (707)
T ss_pred h
Confidence 4
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=194.30 Aligned_cols=290 Identities=20% Similarity=0.269 Sum_probs=204.3
Q ss_pred CCCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCccccee---eee-eeeeceeeeEEeccCCccccceeeec
Q 017296 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTV---SSS-WVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
.-.++.+.||++.|..++|+|- |.+|+|+|.|..|++|+...++.. ..+ .+|. ..|.+++++| .+++|++|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~a 79 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASA 79 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEe
Confidence 4567899999999999999997 889999999999999998754432 111 1344 3588999988 67899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
|.|.++-+|.-..++.. ++.+..+| . .+.+. +. + ..+ .
T Consensus 80 SFD~t~~Iw~k~~~efe-----cv~~lEGH----------E--------------nEVK~-Va----------w-s~s-G 117 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFE-----CVATLEGH----------E--------------NEVKC-VA----------W-SAS-G 117 (312)
T ss_pred eccceEEEeecCCCcee-----EEeeeecc----------c--------------cceeE-EE----------E-cCC-C
Confidence 99999999997654211 00000000 0 00000 00 0 112 3
Q ss_pred eEEEcccCCCeEEEEecCCCc---eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 163 YMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
.++++++.|+.|=||.+..+. +...++.+ ..... ++ .+.|+ ...|+++|.|++||+|+-.
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~H--------tqDVK-~V----~WHPt----~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEH--------TQDVK-HV----IWHPT----EDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccc--------ccccc-EE----EEcCC----cceeEEeccCCeEEEEeec
Confidence 467788899999999887543 44444432 11111 11 23332 2368999999999999865
Q ss_pred CCC--CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 240 NPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 240 ~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
... ...+++.+|...|.++.|++.+..+++++.|+++++|-+... + ...|...++.+++. + ..|+|++
T Consensus 181 ~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~---~~~~sr~~Y~v~W~-~-~~IaS~g 250 (312)
T KOG0645|consen 181 DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L---SGMHSRALYDVPWD-N-GVIASGG 250 (312)
T ss_pred CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----c---chhcccceEeeeec-c-cceEecc
Confidence 222 357889999999999999999988999999999999974311 1 11233457778888 3 4799999
Q ss_pred CCCeEEEEEccCC--eE-----EEEecccCCceEEEEEeCC-CCEEEEEeCCCcEEEecCC
Q 017296 318 WDRRVRIYNYRKG--SA-----LAILKYHHATCNAVSFSSD-CKLMASASEDSTVALWELY 370 (374)
Q Consensus 318 ~dg~v~iwd~~~~--~~-----~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~~W~~~ 370 (374)
.|+.|++|.-... ++ .+.-..|+..|++|+|.|. ..+|+|+|.||+|++|.+.
T Consensus 251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999965432 11 2233578999999999995 4599999999999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=229.91 Aligned_cols=253 Identities=19% Similarity=0.360 Sum_probs=202.2
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..|+.-+..|..|+|+|...+++++-..|.|.+||..=+..+..+..|. ..|..+.|.+ ....++|||.|-.||+|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~--~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHP--TQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--CccceeeecC--CCCeEEecCCccEEEEE
Confidence 4566778889999999999999999999999999987777777777775 4588888987 44689999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
+..+.++.-. + .| ..
T Consensus 79 nYk~rrclft----------------L------------------------------------------------~G-Hl 93 (1202)
T KOG0292|consen 79 NYKTRRCLFT----------------L------------------------------------------------LG-HL 93 (1202)
T ss_pred ecccceehhh----------------h------------------------------------------------cc-cc
Confidence 9987543210 0 00 00
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
..||. + .|.+ -.+.++++|+|.+|+||++.+ .+.+..++||
T Consensus 94 DYVRt-----------~-----------------------~FHh----eyPWIlSASDDQTIrIWNwqs-r~~iavltGH 134 (1202)
T KOG0292|consen 94 DYVRT-----------V-----------------------FFHH----EYPWILSASDDQTIRIWNWQS-RKCIAVLTGH 134 (1202)
T ss_pred ceeEE-----------e-----------------------eccC----CCceEEEccCCCeEEEEeccC-CceEEEEecC
Confidence 11211 0 1111 123699999999999999976 5678899999
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCC------CC-------------------eEEEEEeeecCCCCeEEEEE
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS------TG-------------------SCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~------~~-------------------~~~~~~~~~~~~~~v~~~~~ 306 (374)
...|.|..|+|....++|+|.|.+||+||+.+- .+ -.+....+..|..+|..++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 999999999998889999999999999998521 01 11223345678889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCeE--EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 307 RPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 307 sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|.-.+|+||+.|+.|++|.+...+. +.+.++|.+.|+++.|+|...+|.|.|+|++||+||++-.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 99999999999999999999977664 3467899999999999999999999999999999998643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=195.22 Aligned_cols=244 Identities=22% Similarity=0.372 Sum_probs=181.6
Q ss_pred eeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCC
Q 017296 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (374)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (374)
.++++|.. .|.++-|++ |.++++|+|+||.+.|||.-+.. ....+.....+. +..
T Consensus 49 r~LkGH~~--Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~Ttn----K~haipl~s~WV--MtC--------------- 103 (343)
T KOG0286|consen 49 RTLKGHLN--KIYAMDWST--DSRRIVSASQDGKLIVWDSFTTN----KVHAIPLPSSWV--MTC--------------- 103 (343)
T ss_pred EEeccccc--ceeeeEecC--CcCeEEeeccCCeEEEEEccccc----ceeEEecCceeE--EEE---------------
Confidence 45677764 477777776 77899999999999999986631 111111111100 000
Q ss_pred cccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCce--e----EEeccCccCCCCCcCCCCCcce
Q 017296 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--C----TRLHQNSCGGSPNFSSKGRGMC 207 (374)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 207 (374)
.+ .+.+. +++.|+-|+...||++.+.+. . ..+..+ . ++
T Consensus 104 ---------------------A~-sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH----------t--gy- 147 (343)
T KOG0286|consen 104 ---------------------AY-SPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH----------T--GY- 147 (343)
T ss_pred ---------------------EE-CCCCC-eEEecCcCceeEEEecccccccccceeeeeecCc----------c--ce-
Confidence 00 11222 466777889999999986521 1 112111 1 11
Q ss_pred eEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC
Q 017296 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
++...|..+ + .++++|.|.+..+||+++ ++..+.+.+|...|.++++.| +++.+++|+.|++.+|||++...
T Consensus 148 lScC~f~dD---~--~ilT~SGD~TCalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~- 220 (343)
T KOG0286|consen 148 LSCCRFLDD---N--HILTGSGDMTCALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ- 220 (343)
T ss_pred eEEEEEcCC---C--ceEecCCCceEEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-
Confidence 122234432 2 599999999999999987 566888999999999999998 89999999999999999997653
Q ss_pred eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC---CceEEEEEeCCCCEEEEEeCCCc
Q 017296 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH---ATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 287 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~las~s~D~~ 363 (374)
+. ..+..|...|.+++|.|+|.-+++|+.|+++|+||++..+.+..+. |+ ..|++++||-.|++|+.|-.|.+
T Consensus 221 -c~--qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 221 -CV--QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred -ee--EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccccEEEeeecCCc
Confidence 33 3345678889999999999999999999999999999998888876 44 47999999999999999999999
Q ss_pred EEEecC
Q 017296 364 VALWEL 369 (374)
Q Consensus 364 v~~W~~ 369 (374)
+.+||.
T Consensus 297 c~vWDt 302 (343)
T KOG0286|consen 297 CNVWDT 302 (343)
T ss_pred eeEeec
Confidence 999986
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=212.88 Aligned_cols=287 Identities=20% Similarity=0.342 Sum_probs=201.0
Q ss_pred CCCCCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
+..+.+..|.||.++|.|++=+|.. ..++||+.||.|++||+.+..++.++..|... |..+++.- ..++++|+
T Consensus 54 fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~----~~~~tvgd 127 (433)
T KOG0268|consen 54 FAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQ----TSFFTVGD 127 (433)
T ss_pred hhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc--eeeEEecc----cceEEecC
Confidence 3445677889999999999999977 78999999999999999988888888888644 44444432 56899999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|++||.|.++.. +...+.... . ...++.. ...-+
T Consensus 128 DKtvK~wk~~~~-----p~~tilg~s------------~-----------~~gIdh~------------------~~~~~ 161 (433)
T KOG0268|consen 128 DKTVKQWKIDGP-----PLHTILGKS------------V-----------YLGIDHH------------------RKNSV 161 (433)
T ss_pred CcceeeeeccCC-----cceeeeccc------------c-----------ccccccc------------------ccccc
Confidence 999999998752 111110000 0 0000000 00112
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
++++++ .|.|||......+..+.-. + .. +....|.|... ..|+++..|++|.+||++. ..|
T Consensus 162 FaTcGe--~i~IWD~~R~~Pv~smswG-------~----Dt--i~svkfNpvET---sILas~~sDrsIvLyD~R~-~~P 222 (433)
T KOG0268|consen 162 FATCGE--QIDIWDEQRDNPVSSMSWG-------A----DS--ISSVKFNPVET---SILASCASDRSIVLYDLRQ-ASP 222 (433)
T ss_pred ccccCc--eeeecccccCCccceeecC-------C----Cc--eeEEecCCCcc---hheeeeccCCceEEEeccc-CCc
Confidence 344443 6999998877666555321 1 11 11123443321 2467778999999999997 445
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
++.+. -.-.-+.++|+|..-.|.+|+.|..+..+|++.-... ......|.+.|.++.|||.|+-++||+.|++|||
T Consensus 223 l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p---~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 223 LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP---LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred cceee-eeccccceecCccccceeeccccccceehhhhhhccc---chhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 54432 2334567889997777899999999999998643211 1123346677899999999999999999999999
Q ss_pred EEccCCeEEEEecccC---CceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 325 YNYRKGSALAILKYHH---ATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|.+..+..-.++ |. ..|.+|.||-|.++++|||.|+.||+|..
T Consensus 299 f~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 299 FPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 999877644332 33 47899999999999999999999999964
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-28 Score=225.41 Aligned_cols=279 Identities=15% Similarity=0.300 Sum_probs=198.6
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
++..|.+|.++|+.|+|+|+..+++||++|.+|+||+..+.+++.++.+|. ..|..+.|.+ ..-+++|+|.|.|||
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl--DYVRt~~FHh--eyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHH--EYPWILSASDDQTIR 118 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc--ceeEEeeccC--CCceEEEccCCCeEE
Confidence 566788999999999999999999999999999999999999999999986 3477777776 456899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+|++++++++ .+-+..-|+. ++.+ |.+ ...++++++
T Consensus 119 IWNwqsr~~i-----avltGHnHYV-McAq------------------------------------Fhp--tEDlIVSaS 154 (1202)
T KOG0292|consen 119 IWNWQSRKCI-----AVLTGHNHYV-MCAQ------------------------------------FHP--TEDLIVSAS 154 (1202)
T ss_pred EEeccCCceE-----EEEecCceEE-Eeec------------------------------------cCC--ccceEEEec
Confidence 9999987542 2222211110 0000 001 123578888
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
-|.+|||||+ .-+... ....+ +. . -...|.. +..-++--. ....-+.+.
T Consensus 155 LDQTVRVWDi------sGLRkk---------~~~pg---~~----e-------~~~~~~~-~~~dLfg~~-DaVVK~VLE 203 (1202)
T KOG0292|consen 155 LDQTVRVWDI------SGLRKK---------NKAPG---SL----E-------DQMRGQQ-GNSDLFGQT-DAVVKHVLE 203 (1202)
T ss_pred ccceEEEEee------cchhcc---------CCCCC---Cc----h-------hhhhccc-cchhhcCCc-Ceeeeeeec
Confidence 8999999984 111100 00000 00 0 0011111 111122000 001123578
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
||...|+-.+|+|....++||+.|..|++|.+.... .+. ......|...|+++-|+|...+|+|.|+|++|||||+..
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEecccc-cee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 999999999999999999999999999999885321 111 123456777899999999999999999999999999998
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
-..+++++...+.-+.++-+|...++|. +.|+-+-++.++
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 8899999866778999999999887775 557777788875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=195.40 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=197.8
Q ss_pred CeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
-..+-....+.|.+|+||| ...+|+.||.|++||+|+++. |+..... .+.....+.+++|+. +++.+++|+.|++
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-QQSHDGPVLDVCWSD--DGSKVFSGGCDKQ 95 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh-hhccCCCeEEEEEcc--CCceEEeeccCCc
Confidence 3444445689999999999 556677999999999999876 3432211 122334588888876 6789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++||+.+++.. .+..++.....+. .+.. ..-.++++
T Consensus 96 ~k~wDL~S~Q~~-----~v~~Hd~pvkt~~-------------------wv~~-------------------~~~~cl~T 132 (347)
T KOG0647|consen 96 AKLWDLASGQVS-----QVAAHDAPVKTCH-------------------WVPG-------------------MNYQCLVT 132 (347)
T ss_pred eEEEEccCCCee-----eeeecccceeEEE-------------------EecC-------------------CCcceeEe
Confidence 999999998431 1212211111110 0000 00125789
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
|++|++||+||++....+.++.-+ .+.+++.+. ...++.+..+..|.+|+|+++.. .
T Consensus 133 GSWDKTlKfWD~R~~~pv~t~~LP-----------eRvYa~Dv~---------~pm~vVata~r~i~vynL~n~~t---e 189 (347)
T KOG0647|consen 133 GSWDKTLKFWDTRSSNPVATLQLP-----------ERVYAADVL---------YPMAVVATAERHIAVYNLENPPT---E 189 (347)
T ss_pred cccccceeecccCCCCeeeeeecc-----------ceeeehhcc---------CceeEEEecCCcEEEEEcCCCcc---h
Confidence 999999999999988877666432 234443331 12467788899999999976532 2
Q ss_pred eecCc----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC---------CCeEEEEECCCCCEEE
Q 017296 248 MKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER---------PGISGTSIRPDSKIAA 314 (374)
Q Consensus 248 ~~~h~----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~ 314 (374)
++.+. ..++|+++..+....+.||..|.+.+..++....+.- ..++.|+ +.|.+++|+|.-..|+
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv 267 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV 267 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--eeEEEeccCCCCCCceEEecceEeecccceEE
Confidence 33333 3588999877777789999999999999986422111 1122232 3477899999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEE
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 358 (374)
++|.||+..+||-+....+++.+.|..+|.+..|+.+|.++|.+
T Consensus 268 TaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 268 TAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999998777888888999999999999999999876
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=214.43 Aligned_cols=281 Identities=18% Similarity=0.308 Sum_probs=202.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee--eeeeeceeeeEE--eccCCccccceeeecc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVS--VATGPSIGLNKVISQG 83 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~l~s~~ 83 (374)
.+.-..++||.+.|..+++. ++..++++|.|+++++|+-...+.+.+ +.+|. +.+. +++... +.-++++|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~-~~~~l~~g~ 78 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAES-DKGRLVVGG 78 (745)
T ss_pred ceeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceeccc-cCcceEeec
Confidence 46678999999999999875 456899999999999999866554432 33332 2222 333332 334689999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|.++.+|....+. |...++.+....|.++.. ...
T Consensus 79 ~D~~i~v~~~~~~~----P~~~LkgH~snVC~ls~~-----------------------------------------~~~ 113 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAE----PLYTLKGHKSNVCSLSIG-----------------------------------------EDG 113 (745)
T ss_pred ccceEEEEecCCCC----chhhhhccccceeeeecC-----------------------------------------CcC
Confidence 99999999997763 333344443344433211 111
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.+++|++|.++++|-... +.-.++.+ ... +.++. ..+ ...+++||.|.+||+|.- +.
T Consensus 114 ~~iSgSWD~TakvW~~~~--l~~~l~gH--------~as----VWAv~-~l~-----e~~~vTgsaDKtIklWk~---~~ 170 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIGE--LVYSLQGH--------TAS----VWAVA-SLP-----ENTYVTGSADKTIKLWKG---GT 170 (745)
T ss_pred ceEecccccceEEecchh--hhcccCCc--------chh----eeeee-ecC-----CCcEEeccCcceeeeccC---Cc
Confidence 368999999999996543 22223222 111 11221 111 125899999999999974 55
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+.++.+|++-|+.+++-++. .++|++.||.|++|++++ .+. .++..|+..+++++..++++.|+|+++|++++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g---e~l--~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG---EVL--LEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC---cee--eeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 688999999999999997653 589999999999999953 233 45677888899999888888999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
||+.. ++.+.+.-..-.||++.+-++|. |++|+.||.||+|...
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99875 77788874445999999988876 5667789999999765
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=190.28 Aligned_cols=239 Identities=21% Similarity=0.298 Sum_probs=177.7
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.+.++-+.. ++++++++|.|++||+|++..|.+ +++...|...+....
T Consensus 19 aV~avryN~--dGnY~ltcGsdrtvrLWNp~rg~l-------iktYsghG~EVlD~~----------------------- 66 (307)
T KOG0316|consen 19 AVRAVRYNV--DGNYCLTCGSDRTVRLWNPLRGAL-------IKTYSGHGHEVLDAA----------------------- 66 (307)
T ss_pred ceEEEEEcc--CCCEEEEcCCCceEEeecccccce-------eeeecCCCceeeecc-----------------------
Confidence 466666665 789999999999999999987743 344443332211000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
...++. -+++++.|+.+.+||+++|+.++++..+.. +.. + ..|.- ....
T Consensus 67 ------------~s~Dns--kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a--------qVN----t-V~fNe----esSV 115 (307)
T KOG0316|consen 67 ------------LSSDNS--KFASCGGDKAVQVWDVNTGKVDRRFRGHLA--------QVN----T-VRFNE----ESSV 115 (307)
T ss_pred ------------cccccc--ccccCCCCceEEEEEcccCeeeeecccccc--------eee----E-EEecC----cceE
Confidence 001111 246777899999999999999998865421 111 1 12321 2235
Q ss_pred EEEEecCCcEEEEeccCCC-CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+++|+-|.+|++||.|+.. .|++.+....+.|.++.+... -+++||.||++|.||++.++ . ...+-...|+
T Consensus 116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h--eIvaGS~DGtvRtydiR~G~--l----~sDy~g~pit 187 (307)
T KOG0316|consen 116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH--EIVAGSVDGTVRTYDIRKGT--L----SSDYFGHPIT 187 (307)
T ss_pred EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc--EEEeeccCCcEEEEEeecce--e----ehhhcCCcce
Confidence 8899999999999998653 578888888889999888653 46899999999999997542 1 1223346799
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEE--EeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVS--FSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~--~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+++|+||++..+.++.|+++++.|-.+|+.++.+++|.+.-..+. ++.....+++||+||.|.+||+.+.+
T Consensus 188 ~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 188 SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 999999999999999999999999999999999999997665554 45566799999999999999997643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=201.22 Aligned_cols=246 Identities=22% Similarity=0.378 Sum_probs=185.9
Q ss_pred eeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcc
Q 017296 56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (374)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (374)
+.+|.. -|.++++.| ...+|+||+.|+++++||+.+|.+.. .+ .+|... +
T Consensus 147 i~gHlg--WVr~vavdP--~n~wf~tgs~DrtikIwDlatg~Lkl----tl---tGhi~~-------------------v 196 (460)
T KOG0285|consen 147 ISGHLG--WVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLKL----TL---TGHIET-------------------V 196 (460)
T ss_pred hhhccc--eEEEEeeCC--CceeEEecCCCceeEEEEcccCeEEE----ee---cchhhe-------------------e
Confidence 445653 377888887 35789999999999999999985421 11 011100 0
Q ss_pred cccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeec
Q 017296 136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (374)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (374)
+++ .......++.+++.|+.|+-||++..+.++..+++. ...+|..+ .|
T Consensus 197 -----r~v-------------avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl----------S~V~~L~l---hP 245 (460)
T KOG0285|consen 197 -----RGV-------------AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL----------SGVYCLDL---HP 245 (460)
T ss_pred -----eee-------------eecccCceEEEecCCCeeEEEechhhhhHHHhcccc----------ceeEEEec---cc
Confidence 000 001123355677789999999999999888776542 12233322 12
Q ss_pred CCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 216 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 216 ~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
....+++|+.|.++|+||+|+ ...+..+.||..+|..+.+.+...++++||-|++|+|||+.... -+ ..+.
T Consensus 246 ----Tldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk--t~--~tlt 316 (460)
T KOG0285|consen 246 ----TLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK--TM--ITLT 316 (460)
T ss_pred ----cceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc--ee--Eeee
Confidence 223689999999999999997 56688899999999999998877889999999999999997432 22 2344
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 296 ~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.|...+++++.+|....+||++.| .|+=|++-.+++++-+.+|..-|++++...|| ++++|+..|.+.+||+..+|
T Consensus 317 ~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCc
Confidence 566789999999999999999987 67889999999999999999999999998775 78899999999999997665
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=192.84 Aligned_cols=272 Identities=21% Similarity=0.306 Sum_probs=196.2
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
.++.|..|.|+|....|+.+|.||+++++|.........+. | .+.+..++|.+ ...+++|+.||+||+.|+.++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~--~~plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-H--GAPLLDCAFAD---ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-c--CCceeeeeccC---CceEEEeccCceEEEEEecCC
Confidence 47899999999998889989999999999987664433332 3 35588888875 478999999999999999887
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
... .+.++.. ...|..... . .-.+++|++|++|++
T Consensus 86 ~~~-----~igth~~--------------------~i~ci~~~~------------------~--~~~vIsgsWD~~ik~ 120 (323)
T KOG1036|consen 86 NED-----QIGTHDE--------------------GIRCIEYSY------------------E--VGCVISGSWDKTIKF 120 (323)
T ss_pred cce-----eeccCCC--------------------ceEEEEeec------------------c--CCeEEEcccCccEEE
Confidence 421 1111110 011111100 0 113678999999999
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee-ecCccCe
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPV 255 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~-~~h~~~v 255 (374)
||.+.......+.+. ...+|+.+. ...|+.|+.|..|.+||+|+...+.+.- ..-.-.+
T Consensus 121 wD~R~~~~~~~~d~~-----------kkVy~~~v~---------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 121 WDPRNKVVVGTFDQG-----------KKVYCMDVS---------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred EeccccccccccccC-----------ceEEEEecc---------CCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 999874433333221 133444331 2368899999999999999765544221 1234478
Q ss_pred EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC---------CCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER---------PGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
+|+++-|++.+++.+|-||+|.+-.++.+...+.....++.|+ ..|.+++|||--+.+|+||.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 8999988888899999999999988876632222222333332 3488999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
+...+.+..+..-+..|.+++|+-||..||.|+
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999999988877778899999999999999886
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-25 Score=185.27 Aligned_cols=291 Identities=18% Similarity=0.270 Sum_probs=203.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc--cC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--DG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D~ 86 (374)
+|...|+.-...|++|.|+.+|.+|+++++|.+++++|..++..+.++..+ ..++-.+.|... .+.++.++. |.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--kyG~~~~~Fth~--~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--KYGVDLACFTHH--SNTVIHSSTKEDD 80 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--cccccEEEEecC--CceEEEccCCCCC
Confidence 345567777899999999999999999999999999999999988876543 345666666542 355665554 99
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+||.-++..+++ ++...+|...+..+ . +.+.+ -.++
T Consensus 81 tIryLsl~dNky-------lRYF~GH~~~V~sL-----------------~------------------~sP~~--d~Fl 116 (311)
T KOG1446|consen 81 TIRYLSLHDNKY-------LRYFPGHKKRVNSL-----------------S------------------VSPKD--DTFL 116 (311)
T ss_pred ceEEEEeecCce-------EEEcCCCCceEEEE-----------------E------------------ecCCC--CeEE
Confidence 999999987753 23333322110000 0 00111 2467
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-CCce
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIPL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-~~~~ 245 (374)
+++.|++|++||++..++...+... .+..+ +|-| .| ..++++...+.|++||+|.. +-|.
T Consensus 117 S~S~D~tvrLWDlR~~~cqg~l~~~-----------~~pi~----AfDp---~G-LifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 117 SSSLDKTVRLWDLRVKKCQGLLNLS-----------GRPIA----AFDP---EG-LIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ecccCCeEEeeEecCCCCceEEecC-----------CCcce----eECC---CC-cEEEEecCCCeEEEEEecccCCCCc
Confidence 8889999999999987764444311 11111 1211 22 24666777779999999875 3355
Q ss_pred eeeec---CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 246 TAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 246 ~~~~~---h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.++.. .....+.|.|+++|..++.+...+.+.+.|.=.++..+.+....+.... -.+.+|+||+++|++|+.||+|
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcE
Confidence 55543 3567889999999999999999999999887544433333222222211 2578999999999999999999
Q ss_pred EEEEccCCeEEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 323 RIYNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+|++++++....+++ +...+.++.|+|.-..+||+ |..+-+|=.
T Consensus 257 ~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 257 HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 9999999999999998 68899999999976566554 688888844
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=207.24 Aligned_cols=247 Identities=23% Similarity=0.319 Sum_probs=182.3
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
.+..|.++|+++.|+.+|.+++||+.||.||+|+..- ..+..+..|. ...|..++|++ ..+.++|++.|++|+|||
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh-~eaIRdlafSp--nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHH-AEAIRDLAFSP--NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhh-hhhhheeccCC--CCceeEEecCCCeEEEEe
Confidence 4668999999999999999999999999999999753 3455555553 24689999998 457999999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
....+... .+ .+|..-+ -+. +..+. +=++++|+.|+
T Consensus 209 f~~~kee~----vL---~GHgwdV-----------------ksv------------------dWHP~--kgLiasgskDn 244 (464)
T KOG0284|consen 209 FRMPKEER----VL---RGHGWDV-----------------KSV------------------DWHPT--KGLIASGSKDN 244 (464)
T ss_pred ccCCchhh----ee---ccCCCCc-----------------cee------------------ccCCc--cceeEEccCCc
Confidence 87653211 11 1111100 000 11111 22577888899
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
.|++||.+++.++.+++.+. ..++.+ .|.++ ...|+++|.|..+++||++. -..+..+++|.
T Consensus 245 lVKlWDprSg~cl~tlh~HK------------ntVl~~-~f~~n----~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hk 306 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHK------------NTVLAV-KFNPN----GNWLLTGSKDQSCKVFDIRT-MKELFTYRGHK 306 (464)
T ss_pred eeEeecCCCcchhhhhhhcc------------ceEEEE-EEcCC----CCeeEEccCCceEEEEehhH-hHHHHHhhcch
Confidence 99999999999998887541 122222 34443 24799999999999999984 34577789999
Q ss_pred cCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 253 EPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 253 ~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..++++.++|-. ..|.+|+.||.|..|.+...... .....+|...|++++++|-|.+|++|+.|+++++|...
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccc---cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999998743 34678999999999998632211 11123567789999999999999999999999999663
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=193.73 Aligned_cols=327 Identities=18% Similarity=0.245 Sum_probs=219.5
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+++..|.||++.|..++-.....++.|+|.|.+.++|.+++|+|+..+.+|.. .+.++.|.++ +..+++++.|++-
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s--~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNS--GLLLLTASGDETA 214 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccc--cceEEEccCCcch
Confidence 45667889999999999987778999999999999999999999999999974 4778888873 5688999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCC---CCCCCC----CCCCCCC
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS---LCDSKD----DVPAEGP 161 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~ 161 (374)
.+|...-+=...++... ..|...-....... .....+.....-+..+.+.. ..+... +.-..
T Consensus 215 HIW~~av~~~vP~~~a~----~~hSsEeE~e~sDe-----~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-- 283 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAP----SDHSSEEEEEHSDE-----HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-- 283 (481)
T ss_pred HHHHHhhcCcCCCCCCC----CCCCchhhhhcccc-----cccccccccccCCceeeeeeeeeeccccceEehhhhcC--
Confidence 99995322000000000 00000000000000 00000000000000111111 111110 01011
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
...++++++|.+..+||+++++.+..+.++... -..|.+ .+...++++.+.|-+.++||++..
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E---------LtHcst--------HptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSE---------LTHCST--------HPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchh---------cccccc--------CCcceEEEEeccCceeEeccchhh
Confidence 224677889999999999999987777643210 111211 122236788999999999999965
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
...+..|+||++.|+++.|..+. .+++||.|.+|++||++...... ..+. ..+.+..++++..+++||.-..++.
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRspl---ATIR-tdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPL---ATIR-TDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcc---eeee-cCCccceeEeecCCceEEeccCCce
Confidence 55677899999999999997654 47999999999999997542111 1121 2356888999999999999999999
Q ss_pred EEEEEccCCeEEEEe-----cccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCCCC
Q 017296 322 VRIYNYRKGSALAIL-----KYHHATCNAVSFSSDCK--LMASASEDSTVALWELYPPH 373 (374)
Q Consensus 322 v~iwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~~~ 373 (374)
|++||+. |..+..+ ++|..-|.|.+|.-+.. -|+|++-|..+.=|++..|-
T Consensus 422 vRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 422 VRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred EEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 9999995 5555444 47999999999986543 58999999999999998774
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=215.94 Aligned_cols=256 Identities=23% Similarity=0.342 Sum_probs=187.4
Q ss_pred CCCeEE-eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 8 PDPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 8 ~~~~~~-l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
...+.+ |.||.+.|.+++|..-+.+|++||.|.+++|||..+|++...+.+|... +.++... ..++++|+.|.
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~~----~~~~~sgs~D~ 311 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTID----PFLLVSGSRDN 311 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEcc----CceEeeccCCc
Confidence 345556 9999999999999877889999999999999999999999999988654 4444443 35788999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+||+|+++++.+.. ...+|...+. +... . .-+++
T Consensus 312 tVkVW~v~n~~~l~-------l~~~h~~~V~-----------------~v~~--------------------~--~~~lv 345 (537)
T KOG0274|consen 312 TVKVWDVTNGACLN-------LLRGHTGPVN-----------------CVQL--------------------D--EPLLV 345 (537)
T ss_pred eEEEEeccCcceEE-------EeccccccEE-----------------EEEe--------------------c--CCEEE
Confidence 99999999875321 1111110000 0000 0 22578
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+|+.|++|++||+++++++..+..+. .+..+..+ + +...+++|+-|++|++||++....++.
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~----------~~V~sl~~-----~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHT----------GRVYSLIV-----D---SENRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCc----------ceEEEEEe-----c---CcceEEeeeeccceEeecCCchhhhhh
Confidence 89999999999999999998887532 12222211 1 113689999999999999987425788
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
++++|..-+..+.+.. ..+++++.|++|++||.+.......+... +...+..+++. ...+++++.||++++||
T Consensus 408 tl~~h~~~v~~l~~~~--~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLLRD--NFLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hhcCCccccccccccc--ceeEeccccccEEEeecccCceeeeeccC---CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 8999999997777654 45799999999999999765443332211 44567777776 45788899999999999
Q ss_pred ccCCeEEEEecccC
Q 017296 327 YRKGSALAILKYHH 340 (374)
Q Consensus 327 ~~~~~~~~~~~~h~ 340 (374)
+++++....+-.+.
T Consensus 481 l~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 481 LRSGTLIRTLLSTD 494 (537)
T ss_pred cccCchhhhhhhcc
Confidence 99998877664444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-26 Score=199.55 Aligned_cols=313 Identities=15% Similarity=0.170 Sum_probs=203.4
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc----ceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
......|.+|+..|.++++.|.|..|+|||.|.+|++||+..- +....+. ....|.+.++.+++. +++++..+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~T--g~~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVT--GDQILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCC--CCeEEEEe
Confidence 3456689999999999999999999999999999999998532 1122222 223467888889884 45666555
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
...+.+|+|=..-.. ........++..+...+.+.+. ..|.++ .+.. +-
T Consensus 234 g~aqakl~DRdG~~~-----~e~~KGDQYI~Dm~nTKGHia~-------lt~g~w------------------hP~~-k~ 282 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEI-----VEFSKGDQYIRDMYNTKGHIAE-------LTCGCW------------------HPDN-KE 282 (641)
T ss_pred cCcceeEEccCCcee-----eeeeccchhhhhhhccCCceee-------eecccc------------------ccCc-cc
Confidence 556788888542110 0000111111111111111110 011111 1222 33
Q ss_pred EEEcccCCCeEEEEecCCCc-eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+++++.|+++|+||+...+ ++..+......+ .+.. .....+.++ ...+++|+.||+|.+||.+...
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g-------~Rv~-~tsC~~nrd----g~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG-------KRVP-VTSCAWNRD----GKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCC-------cccC-ceeeecCCC----cchhhhcccCCceeeeecCCcc
Confidence 45678889999999998765 233332111000 0111 111234433 2358899999999999985422
Q ss_pred --CceeeeecCcc--CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 243 --IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 243 --~~~~~~~~h~~--~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
..+..-+.|.. .|+|+.|++++++|++=|.|+++++||++... .++....--.....-+.++|||+.++|++|..
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 12233356776 89999999999999999999999999997432 22211110011123457899999999998874
Q ss_pred ------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 319 ------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 319 ------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.|++.+||..+.+..+.+.-....|..+.|+|.=..|+.++.||+++++
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 5789999999988888888778899999999987788888899999985
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=201.39 Aligned_cols=246 Identities=21% Similarity=0.285 Sum_probs=192.1
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+..++--.-||++..|-+--+++++||+|..|+|+|.++++.+..+..|. ..+.+++..|. .-.++|+|.|.+||+
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~--DyIR~iavHPt--~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS--DYIRSIAVHPT--LPYVLTSSDDMTIKL 123 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc--cceeeeeecCC--CCeEEecCCccEEEE
Confidence 34445557788889998878899999999999999999999999987775 45888888874 358999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
||.+.+ +.|..
T Consensus 124 W~we~~---------------wa~~q------------------------------------------------------ 134 (794)
T KOG0276|consen 124 WDWENE---------------WACEQ------------------------------------------------------ 134 (794)
T ss_pred eeccCc---------------eeeee------------------------------------------------------
Confidence 999753 00100
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
.+.+ ++ .++|.+ .|.|. +...++++|-|++|++|.+.++ .+..++++
T Consensus 135 ----------------tfeG--------H~----HyVMqv-~fnPk---D~ntFaS~sLDrTVKVWslgs~-~~nfTl~g 181 (794)
T KOG0276|consen 135 ----------------TFEG--------HE----HYVMQV-AFNPK---DPNTFASASLDRTVKVWSLGSP-HPNFTLEG 181 (794)
T ss_pred ----------------EEcC--------cc----eEEEEE-EecCC---CccceeeeeccccEEEEEcCCC-CCceeeec
Confidence 0000 00 011111 13332 2225899999999999999874 46778999
Q ss_pred CccCeEEEEEe--cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 251 HLEPVLCLSID--ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 251 h~~~v~~~~~~--~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
|...|+|+.+- ++.++++||+.|.+|++||..+.++. ..+..|...|+.++|+|.-.+|+||++||+||||+..
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV----~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV----QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH----HHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 99999999993 45578999999999999998655432 2345677789999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+.+.-.++...-++|++++-.+.+..++.|...|.|.+
T Consensus 258 Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 258 TYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88887888877889999999988888999888877754
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=183.37 Aligned_cols=249 Identities=20% Similarity=0.298 Sum_probs=177.2
Q ss_pred eeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCC
Q 017296 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (374)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (374)
+..+.+|. ..|..+.|.| ++..|+|||.|..|-+|++-.. +. ....++ .|.-++.
T Consensus 40 ~m~l~gh~--geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gd-ce--N~~~lk---gHsgAVM--------------- 94 (338)
T KOG0265|consen 40 IMLLPGHK--GEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGD-CE--NFWVLK---GHSGAVM--------------- 94 (338)
T ss_pred hhhcCCCc--ceEEEEEECC--CCCeEeecCCcceEEEEecccc-cc--ceeeec---cccceeE---------------
Confidence 34455565 3488888988 6789999999999999997432 11 011111 1110000
Q ss_pred CcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
+.. +..++ -.+++++.|++++.||+++|++..+...+.. ++..
T Consensus 95 ----~l~----------------~~~d~--s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-------------~vNs-- 137 (338)
T KOG0265|consen 95 ----ELH----------------GMRDG--SHILSCGTDKTVRGWDAETGKRIRKHKGHTS-------------FVNS-- 137 (338)
T ss_pred ----eee----------------eccCC--CEEEEecCCceEEEEecccceeeehhccccc-------------eeee--
Confidence 000 00111 1356777899999999999998877754321 1110
Q ss_pred eecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
+.|. ..+...+.+|+.|+++++||+|+. ..++++ ....+++++.|......+.+|+-|+.|++||++...+...
T Consensus 138 ~~p~-rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~--- 211 (338)
T KOG0265|consen 138 LDPS-RRGPQLVCSGSDDGTLKLWDIRKK-EAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT--- 211 (338)
T ss_pred cCcc-ccCCeEEEecCCCceEEEEeeccc-chhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEE---
Confidence 1111 134456788999999999999963 334433 2356789999977777889999999999999976655444
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC----eEEEEecccC----CceEEEEEeCCCCEEEEEeCCCcE
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHH----ATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~----~~v~~v~~sp~~~~las~s~D~~v 364 (374)
+..|.+.|..+..+|+|.++.+-+.|.++++||++.. ++++.+++|. ......+|+|++..+..+|.|..|
T Consensus 212 -lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 -LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred -eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 4568889999999999999999999999999999753 4477787775 345677999999999999999999
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.+||..
T Consensus 291 yvwd~~ 296 (338)
T KOG0265|consen 291 YVWDTT 296 (338)
T ss_pred EEeecc
Confidence 999874
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=189.54 Aligned_cols=287 Identities=17% Similarity=0.242 Sum_probs=204.6
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee--e----eeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--V----HSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
|.++-+.|..|+|||.+|+|||.||-|.|||..+|+.-..++ . -.....+.|+.|+- |...++||+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 567778899999999999999999999999999886422211 0 11223577888876 667999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+|.+++|.+.+.- .+.+.-..+.+.+. .++. -+.+++
T Consensus 289 vWri~tG~ClRrF---drAHtkGvt~l~FS--------------------------------------rD~S--qiLS~s 325 (508)
T KOG0275|consen 289 VWRIETGQCLRRF---DRAHTKGVTCLSFS--------------------------------------RDNS--QILSAS 325 (508)
T ss_pred EEEEecchHHHHh---hhhhccCeeEEEEc--------------------------------------cCcc--hhhccc
Confidence 9999999764310 00111111111111 1111 245677
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|.++|+--+.+|+++..+.++..- +.-..|.. .| ..++++|.||+|++|+.++. .++.+++
T Consensus 326 fD~tvRiHGlKSGK~LKEfrGHsSy-------------vn~a~ft~---dG-~~iisaSsDgtvkvW~~Ktt-eC~~Tfk 387 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKEFRGHSSY-------------VNEATFTD---DG-HHIISASSDGTVKVWHGKTT-ECLSTFK 387 (508)
T ss_pred ccceEEEeccccchhHHHhcCcccc-------------ccceEEcC---CC-CeEEEecCCccEEEecCcch-hhhhhcc
Confidence 8899999999999988777654210 00011222 22 36999999999999999864 3455554
Q ss_pred c--CccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEe-eecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 250 V--HLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 250 ~--h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
. ...+|+.+-.-|+ ...++.+...+++.+-++.++ .+.... -+.+....-+.++||-|.++.+.++|+...-|
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 3 3347777766443 345788888999999988532 221111 12223345677899999999999999999999
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+.+|+.-.++.-|+..|-.++-+|-..+|||-++||.+++|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999998888999999999999999999999999999999995
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-23 Score=163.39 Aligned_cols=294 Identities=18% Similarity=0.277 Sum_probs=200.9
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc------c-----ceeeee---eeeeceeeeEEeccCCccccceeee
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H-----RTVSSS---WVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~------~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
.-+..|++++|+|.|.+-+.||..++.+|-.... + ++...+ ..| +...+.|.+|++ .+..+++
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh-hkgsiyc~~ws~--~geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH-HKGSIYCTAWSP--CGELIAT 106 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccc-cCccEEEEEecC--ccCeEEe
Confidence 4577899999999999999999999999875321 1 110111 112 124588889987 6789999
Q ss_pred ccccCeEEEEecCCCCCCCC-CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
|+.|++|++--.+...+... +.+....+...+.-+.+.. .+..+
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld-----------------------------------~~~s~ 151 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLD-----------------------------------DPESG 151 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEec-----------------------------------CCCcC
Confidence 99999999977754322110 1111111111111111110 01123
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
+.+++.+|..|..|.+=|-.+|+....+..+ .+...+..... ...+++|++|.+|++||++-
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sgh------------tghilalyswn------~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGH------------TGHILALYSWN------GAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCC------------cccEEEEEEec------CcEEEccCCCceEEEEeeec
Confidence 4566777777888888788777765554432 12223332221 12588999999999999986
Q ss_pred CCCceeeee--cC-----ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE
Q 017296 241 PGIPLTAMK--VH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 241 ~~~~~~~~~--~h-----~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 313 (374)
+.. +.++. .| ...|..++++|.++.+++|-.|..+.|||++.. ++. ..+.-|...|+++.|||...||
T Consensus 214 ~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~i--q~f~phsadir~vrfsp~a~yl 288 (350)
T KOG0641|consen 214 NSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMI--QRFHPHSADIRCVRFSPGAHYL 288 (350)
T ss_pred cce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--cee--eeeCCCccceeEEEeCCCceEE
Confidence 532 33321 12 357999999999999999999999999999754 222 3344567789999999999999
Q ss_pred EEEeCCCeEEEEEccCC--e--EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 314 ATAGWDRRVRIYNYRKG--S--ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~--~--~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++++.|.+|++=|++.. + ++-+...|...+-.+.|+|..--+++.|+|.++.+|-+.
T Consensus 289 lt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 289 LTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999998531 1 122445688888889999998889999999999999764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=181.50 Aligned_cols=306 Identities=20% Similarity=0.278 Sum_probs=192.4
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc-----ceeeeeeeeeceeeeEEeccCCcccc-ceeeecc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~ 83 (374)
.+.+|+||.+.|++++|+.+|+.|+|++.|++|+||++..- +++..-- ...| -..+.|.+ |- ..+++..
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dh-pT~V~Fap--Dc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDH-PTRVVFAP--DCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCC-ceEEEECC--CcceEEEEEc
Confidence 35689999999999999999999999999999999997542 2222100 0011 23445665 33 3455666
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
...+++++.+...+- .... ....+...+.+.. .+.....+. ....+.+|
T Consensus 153 ~g~~l~vyk~~K~~d---G~~~--~~~v~~D~~~f~~-----------kh~v~~i~i---------------GiA~~~k~ 201 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD---GSGS--HHFVHIDNLEFER-----------KHQVDIINI---------------GIAGNAKY 201 (420)
T ss_pred cCCEEEEEEeeeccc---CCCC--cccccccccccch-----------hcccceEEE---------------eecCCceE
Confidence 677888888753210 0000 0000000000000 000000110 11233344
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC--
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-- 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-- 241 (374)
+++++.|.+|.+|+++ |+.+..+..+...+. ++ ...| +|. .++++.---.|++|.+--.
T Consensus 202 -imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~-----------~a--avSP---~GR-Fia~~gFTpDVkVwE~~f~kd 262 (420)
T KOG2096|consen 202 -IMSASLDTKICLWDLK-GQLLQSIDTNQSSNY-----------DA--AVSP---DGR-FIAVSGFTPDVKVWEPIFTKD 262 (420)
T ss_pred -EEEecCCCcEEEEecC-Cceeeeecccccccc-----------ce--eeCC---CCc-EEEEecCCCCceEEEEEeccC
Confidence 5566778899999998 888877754322111 11 1222 232 4555666677999987321
Q ss_pred -----CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC-----CCeEEEEEe--eecCCCCeEEEEECCC
Q 017296 242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-----TGSCVIKKE--INLERPGISGTSIRPD 309 (374)
Q Consensus 242 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~-----~~~~~~~~~--~~~~~~~v~~~~~sp~ 309 (374)
-.....++||...|..++|+++....++.|.||++|+||++-. ....+-... +..-...-..++++|.
T Consensus 263 G~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~ 342 (420)
T KOG2096|consen 263 GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS 342 (420)
T ss_pred cchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCC
Confidence 1235568999999999999999889999999999999998621 111000000 0011122336899999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++.+|.+ .-.+++++..++++.+.++. .|...|.+++|+|+|+++||++ |..+++..-.++
T Consensus 343 g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 343 GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9988744 46689999999998877664 6899999999999999999988 788888765544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=204.41 Aligned_cols=244 Identities=23% Similarity=0.408 Sum_probs=179.7
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCC--CCCCCceeeeecceeeeeeeeeccccccccccCCCCccccccc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG--LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (374)
..+.++.|++ +++.+++++.|+.+++|++..++ .... + ..|...+
T Consensus 160 ~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~~~~~~----l---~~h~~~v------------------------ 206 (456)
T KOG0266|consen 160 PSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKSNLLRE----L---SGHTRGV------------------------ 206 (456)
T ss_pred CceEEEEEcC--CCCeEEEccCCCcEEEeecccccchhhcc----c---cccccce------------------------
Confidence 3577778887 67789999999999999996553 1110 0 0000000
Q ss_pred CceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCC-ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCC
Q 017296 141 GETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (374)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (374)
....+.+++ + ++++++.|.++++||++.. .++.++..+. ...+++ .|.+.
T Consensus 207 -----------~~~~fs~d~-~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~----------~~v~~~---~f~p~--- 257 (456)
T KOG0266|consen 207 -----------SDVAFSPDG-S-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHS----------TYVTSV---AFSPD--- 257 (456)
T ss_pred -----------eeeEECCCC-c-EEEEecCCceEEEeeccCCCeEEEEecCCC----------CceEEE---EecCC---
Confidence 000111222 2 5678888999999999544 6667775431 112222 24432
Q ss_pred CceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-
Q 017296 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER- 298 (374)
Q Consensus 220 ~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~- 298 (374)
+ ..+++|+.|++|++||+++ ..+...+.+|.++|.+++|.+++..+++++.|+.|++||+......+ ...+..+.
T Consensus 258 g-~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~~~~~~ 333 (456)
T KOG0266|consen 258 G-NLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC--LKLLSGAEN 333 (456)
T ss_pred C-CEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee--eecccCCCC
Confidence 3 4799999999999999987 67788899999999999999999999999999999999997553211 12222222
Q ss_pred C-CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce---EEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 299 P-GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC---NAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 299 ~-~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v---~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
. .++.+.|+|+++++++++.|+.+++||+..++....+.+|...+ .+..+++.++++.+++.|+.|++|++...
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 2 58999999999999999999999999999999999999998753 34445789999999999999999999753
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=214.62 Aligned_cols=272 Identities=16% Similarity=0.211 Sum_probs=183.2
Q ss_pred CCcEEEEeCcccceeeeeee---eeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeee
Q 017296 39 GGELRIWDTVQHRTVSSSWV---HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (374)
Q Consensus 39 D~~v~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (374)
+|.+++|+....+....+.. ..+...+.+++|++ +++++++|+.|++|++||......... ..+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~--------~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGR--------DIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCccccccc--------ccccce
Confidence 67788898765443222111 11224477888887 678999999999999999864210000 000000
Q ss_pred eeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCC
Q 017296 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (374)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~ 195 (374)
..+.. . ...... .+.+..+. ++++++.|++|++||+.+++.+..+..+.
T Consensus 527 ~~~~~--~-------~~v~~l------------------~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~--- 575 (793)
T PLN00181 527 VELAS--R-------SKLSGI------------------CWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHE--- 575 (793)
T ss_pred EEecc--c-------CceeeE------------------EeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCC---
Confidence 00000 0 000000 01111122 46677789999999999988776664321
Q ss_pred CCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-cCCCceEEEecCC
Q 017296 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQ 274 (374)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~ 274 (374)
....++ .+.+. ....+++|+.||+|++||++. ...+..+.. ...+.++.|. +++..+++|+.|+
T Consensus 576 -------~~V~~l---~~~p~---~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg 640 (793)
T PLN00181 576 -------KRVWSI---DYSSA---DPTLLASGSDDGSVKLWSINQ-GVSIGTIKT-KANICCVQFPSESGRSLAFGSADH 640 (793)
T ss_pred -------CCEEEE---EEcCC---CCCEEEEEcCCCEEEEEECCC-CcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCC
Confidence 111111 23221 223689999999999999976 344555554 3688999994 5678899999999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC------eEEEEecccCCceEEEEE
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG------SALAILKYHHATCNAVSF 348 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~h~~~v~~v~~ 348 (374)
.|++||++..... ...+..|...|..+.|. ++.+|++++.|++|++||+..+ +.+..+.+|...+..++|
T Consensus 641 ~I~iwD~~~~~~~---~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 641 KVYYYDLRNPKLP---LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred eEEEEECCCCCcc---ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 9999999743211 12234577789999997 6789999999999999999743 567889999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEecCC
Q 017296 349 SSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 349 sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|++++||+|+.|+.|++|+..
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999964
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=201.57 Aligned_cols=298 Identities=19% Similarity=0.299 Sum_probs=199.5
Q ss_pred cCCCcee---EEEEeC-CCCEEEEecCCCcEEEEeCcccc------eeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 16 GHRASVT---DVCFHQ-TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 16 gH~~~V~---~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
.|...|. .+..+. .+++|+|||.||+|++|+..... .+..+..|... +.-++.+. +++.|+|+|.|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW--VNDiiL~~--~~~tlIS~SsD 94 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW--VNDIILCG--NGKTLISASSD 94 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhH--HhhHHhhc--CCCceEEecCC
Confidence 3555666 566664 45679999999999999975432 24456666544 33334433 45789999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
-+|++|++..+.. .++.+..-| ...+. +. ........++
T Consensus 95 tTVK~W~~~~~~~-----~c~stir~H----------------------------~DYVk--cl------a~~ak~~~lv 133 (735)
T KOG0308|consen 95 TTVKVWNAHKDNT-----FCMSTIRTH----------------------------KDYVK--CL------AYIAKNNELV 133 (735)
T ss_pred ceEEEeecccCcc-----hhHhhhhcc----------------------------cchhe--ee------eecccCceeE
Confidence 9999999976421 011100000 00000 00 0012234578
Q ss_pred EcccCCCeEEEEecCCCce--eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 166 VAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++|+-|+.|.+||++++.. +..+.... ..+....++...+.++ .++....+++|+..+.|++||.+...
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t-~~sl~sG~k~siYSLA-------~N~t~t~ivsGgtek~lr~wDprt~~- 204 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVT-VNSLGSGPKDSIYSLA-------MNQTGTIIVSGGTEKDLRLWDPRTCK- 204 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccc-cccCCCCCccceeeee-------cCCcceEEEecCcccceEEecccccc-
Confidence 8999999999999998743 21111100 0111112222222222 22333468889999999999998754
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+..++||++.|.++-++.++..++++|.||+|+|||+..+ +|.. .+..|..+++++..+|+-.++.+|+.||.|.
T Consensus 205 kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--rCl~--T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 205 KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--RCLA--TYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--ceee--eEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 45568899999999999999999999999999999999643 3443 3556778899999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.=|+.+......+...+.+|..+..+-..+-+-.+..|+.|+-|...+
T Consensus 281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999988644444444566777777764444446678899999998754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=187.16 Aligned_cols=287 Identities=17% Similarity=0.270 Sum_probs=194.0
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee-e-------------e----eeeceeeeEEec
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-------------W----VHSAAHGIVSVA 69 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~-~-------------~----~~~~~~~~~~~~ 69 (374)
...+.++..|.-+|.+|+++|+++++++++.|++|.-|+..+++.... . . .|. ..+.+++
T Consensus 132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~a 209 (479)
T KOG0299|consen 132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLA 209 (479)
T ss_pred cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEE
Confidence 334788899999999999999999999999999999999988764311 0 0 221 2366777
Q ss_pred cCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCC
Q 017296 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (374)
Q Consensus 70 ~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (374)
.++ |+.+|++|+.|.-|.||+.++.+... + ...|--.+. +..+.
T Consensus 210 vS~--Dgkylatgg~d~~v~Iw~~~t~ehv~----~---~~ghr~~V~-----------------~L~fr---------- 253 (479)
T KOG0299|consen 210 VSS--DGKYLATGGRDRHVQIWDCDTLEHVK----V---FKGHRGAVS-----------------SLAFR---------- 253 (479)
T ss_pred EcC--CCcEEEecCCCceEEEecCcccchhh----c---cccccccee-----------------eeeee----------
Confidence 776 78999999999999999999864321 1 001100000 00000
Q ss_pred CCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-Ee
Q 017296 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GY 228 (374)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs 228 (374)
.+. --+++++.|+.|++|++.....+.++..+. .... .+.+. ....+++ |.
T Consensus 254 ---------~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHq----------d~v~--~IdaL------~reR~vtVGg 305 (479)
T KOG0299|consen 254 ---------KGT-SELYSASADRSVKVWSIDQLSYVETLYGHQ----------DGVL--GIDAL------SRERCVTVGG 305 (479)
T ss_pred ---------cCc-cceeeeecCCceEEEehhHhHHHHHHhCCc----------ccee--eechh------cccceEEecc
Confidence 000 124677889999999998766555554432 1111 11111 1113444 67
Q ss_pred cCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee--------ecCCCC
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI--------NLERPG 300 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~--------~~~~~~ 300 (374)
.|.++++|++.. ...-.+.+|...+.|++|=.+ ..+++||.+|.|.||++-.....+...... ..+..+
T Consensus 306 rDrT~rlwKi~e--esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W 382 (479)
T KOG0299|consen 306 RDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW 382 (479)
T ss_pred ccceeEEEeccc--cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc
Confidence 999999999954 234456788889999999333 358999999999999986554333321110 011137
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCC----eEEEEecccCCceEEEEEeCCCCEEEEE-eCCCcE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHHATCNAVSFSSDCKLMASA-SEDSTV 364 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~las~-s~D~~v 364 (374)
+++++.-|...++|+|+++|.||+|-+.++ +++..+. -.+.|++++|+++|+.|+.| +....+
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence 899999999999999999999999999876 3344444 56799999999999955544 544333
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=203.25 Aligned_cols=190 Identities=22% Similarity=0.282 Sum_probs=140.7
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.++++++-|+|||||++...+|+.++..+. ++.+ .+|.|.. -.++++||-||-||||++...
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-------------fVTc-VaFnPvD---DryFiSGSLD~KvRiWsI~d~- 442 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFSHND-------------FVTC-VAFNPVD---DRYFISGSLDGKVRLWSISDK- 442 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEecCC-------------eeEE-EEecccC---CCcEeecccccceEEeecCcC-
Confidence 456677779999999999999988876531 2222 2466542 236999999999999999542
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec------CCCCeEEEEECCCCC-EEEE
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL------ERPGISGTSIRPDSK-IAAT 315 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~-~l~s 315 (374)
...... .-.+-|+++++.|+|.+.+.|+.+|.+++|+...-. ......+.. ....|+++.|.|... -|+.
T Consensus 443 ~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk--~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 443 KVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK--LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred eeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe--EEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 222222 223789999999999999999999999999986432 222222221 123699999998544 4667
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
++.|..|||+|.++.+.+..++++.+ .=....|+.||++|+++|+|..|++|+++.++
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 88999999999988888777887653 23456899999999999999999999986543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=181.36 Aligned_cols=253 Identities=20% Similarity=0.270 Sum_probs=181.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.=+.+|+||++.|...+++.+..+-+|++.|=+-+|||..+|..++++. | .|-+.+++|+- |.++|++|+.++-+
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-h--khivk~~af~~--ds~~lltgg~ekll 124 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-H--KHIVKAVAFSQ--DSNYLLTGGQEKLL 124 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-h--hheeeeEEecc--cchhhhccchHHHh
Confidence 4578999999999999999998999999999999999999999988764 3 36688888876 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|++|++..+. .|. .+ ..|. +. +.... +...+ +.+ +++
T Consensus 125 rvfdln~p~A--pp~-E~---~ght---------------------------g~-Ir~v~-------wc~eD-~~i-LSS 161 (334)
T KOG0278|consen 125 RVFDLNRPKA--PPK-EI---SGHT---------------------------GG-IRTVL-------WCHED-KCI-LSS 161 (334)
T ss_pred hhhhccCCCC--Cch-hh---cCCC---------------------------Cc-ceeEE-------EeccC-ceE-Eee
Confidence 9999976432 111 11 0000 00 00000 00011 223 344
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
.+|++||+||.++++....+.-+....+.- +. +.+ .+++-...++|++||..+.+ .+...
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlE--------------vs---~dG--~ilTia~gssV~Fwdaksf~-~lKs~ 221 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLE--------------VS---QDG--RILTIAYGSSVKFWDAKSFG-LLKSY 221 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCccee--------------ec---cCC--CEEEEecCceeEEecccccc-ceeec
Confidence 889999999999999888776443222211 11 122 36666677899999987543 22222
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+ -.-.|.+.+.+|+...++.|+.|.-+..||..++..... ..+.|-..|-++.|+|||..-|+|+.||+|++|...
T Consensus 222 k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 222 K-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred c-CccccccccccCCCceEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 1 244677888889888889999999999999876543322 135566789999999999999999999999999887
Q ss_pred CCeEE
Q 017296 329 KGSAL 333 (374)
Q Consensus 329 ~~~~~ 333 (374)
.++..
T Consensus 298 ~~~~~ 302 (334)
T KOG0278|consen 298 PGKTY 302 (334)
T ss_pred CCCch
Confidence 66544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-24 Score=178.46 Aligned_cols=305 Identities=16% Similarity=0.238 Sum_probs=201.4
Q ss_pred CCCCCCCC-CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc------------c------ceeeeeeeeece
Q 017296 2 SKRPPPPD-PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAA 62 (374)
Q Consensus 2 ~~~~~~~~-~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~------------~------~~~~~~~~~~~~ 62 (374)
+++|.|++ +...+..|++++++-+|++||.+++|||.|.+|++.|.+. + ..+.++..|.
T Consensus 95 ~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-- 172 (430)
T KOG0640|consen 95 GSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-- 172 (430)
T ss_pred cCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--
Confidence 34565654 5667889999999999999999999999999999999751 1 1234444454
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+..+.|.| ....|+||+.|++||+||........ ..+ ..+. .++-.
T Consensus 173 devn~l~FHP--re~ILiS~srD~tvKlFDfsK~saKr----A~K------------------~~qd--------~~~vr 220 (430)
T KOG0640|consen 173 DEVNDLDFHP--RETILISGSRDNTVKLFDFSKTSAKR----AFK------------------VFQD--------TEPVR 220 (430)
T ss_pred Ccccceeecc--hhheEEeccCCCeEEEEecccHHHHH----HHH------------------Hhhc--------cceee
Confidence 3477788887 45789999999999999986431100 000 0000 00000
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
.+ .+. +++. ++++|.+-.++++||+++-++....... ..+ .+ . +....+.. ...
T Consensus 221 si----------SfH-PsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd-----~qh--t~-a--i~~V~Ys~----t~~ 274 (430)
T KOG0640|consen 221 SI----------SFH-PSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPD-----DQH--TG-A--ITQVRYSS----TGS 274 (430)
T ss_pred eE----------eec-CCCc-eEEEecCCCceeEEeccceeEeeecCcc-----ccc--cc-c--eeEEEecC----Ccc
Confidence 00 011 2223 4556777789999999998865443210 001 01 1 11112222 223
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee-ecCcc-CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee---cC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM-KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~-~~h~~-~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~---~~ 297 (374)
..++||.||.|++||=-+. .++.++ ..|.. .|-+..|..++.++++.+.|..++||.+. +++++....-. ..
T Consensus 275 lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~--t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS--TGRMLKEYTGAGTTGR 351 (430)
T ss_pred EEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec--CCceEEEEecCCcccc
Confidence 5789999999999996543 334444 34644 67778888999999999999999999885 44554433211 11
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 298 RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+..-+...|.....|++.-.+ .+.+.-||.+++.....+ .+|.+.+..+.-||.+..+.|+|.|-..|+|--
T Consensus 352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 111234556666667665543 467888999988765443 479999999999999999999999999999953
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=196.96 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=105.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC-eE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG-IS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~-v~ 302 (374)
+++|+.|++|++||++. ......+.+|...|.+++|++++..+++++.|++|++||++... .. ..+..|... ..
T Consensus 141 LaSgs~DgtVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--~v--~tl~~H~~~~~~ 215 (493)
T PTZ00421 141 LASAGADMVVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--IV--SSVEAHASAKSQ 215 (493)
T ss_pred EEEEeCCCEEEEEECCC-CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--EE--EEEecCCCCcce
Confidence 56666777777777754 33455566788899999999999999999999999999997542 22 233444432 44
Q ss_pred EEEECCCCCEEEEEe----CCCeEEEEEccCCe-EEEEecccC-CceEEEEEeCCCCEEEEEe-CCCcEEEecCCCC
Q 017296 303 GTSIRPDSKIAATAG----WDRRVRIYNYRKGS-ALAILKYHH-ATCNAVSFSSDCKLMASAS-EDSTVALWELYPP 372 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~----~dg~v~iwd~~~~~-~~~~~~~h~-~~v~~v~~sp~~~~las~s-~D~~v~~W~~~~~ 372 (374)
.+.|.|++..+++++ .|++|++||+++.+ ++.....+. ..+....|+|++.+|++++ .|++|++|++...
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 677888877777654 47999999998654 444444333 4566677999999998887 5999999998654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=182.72 Aligned_cols=271 Identities=17% Similarity=0.246 Sum_probs=176.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC---EEEEecCCCcEEEEeCccccee----eeeeeeeceeeeEEeccCCccccceee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHRTV----SSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~---~l~s~s~D~~v~vWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.+.+.++.||.++|.++++..... +|+|+|.|.++++|..+.++.. ..-.+|... |.++.... ++.+++
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~--sgtr~~ 209 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDS--SGTRFC 209 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc--eeEEEecC--CCCeEE
Confidence 367889999999999999864443 5999999999999998776532 223366543 55665544 568999
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC--CCC-C
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDV-P 157 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 157 (374)
||+.|.+|++|+..+..... +... ..+...+.....+. ..+ ...+.+..+.. ..+ .
T Consensus 210 SgS~D~~lkiWs~~~~~~~~-----~E~~---------s~~rrk~~~~~~~~---~~r----~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDE-----LESS---------SNRRRKKQKREKEG---GTR----TPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred eecccceeeecccCCCcccc-----cccc---------chhhhhhhhhhhcc---ccc----CceEEecccccceeeEEE
Confidence 99999999999943321100 0000 00000000000000 000 00000000100 000 0
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
.+ .-.++++++|.+|+.||++++....++..+.. -.|+. +.+ ...++++|+.|.-|++||
T Consensus 269 ~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-----------l~~i~---~~~----~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 269 SD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-----------LNCIS---YSP----LSKLLASGSSDRHIRLWD 328 (423)
T ss_pred cC--CCceEeecccceEEEEEeecccceeeeecCcc-----------eeEee---ccc----ccceeeecCCCCceeecC
Confidence 11 23578899999999999999987766643211 01111 111 123688999999999999
Q ss_pred ccCCC--CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 238 IRNPG--IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 238 l~~~~--~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
.|++. ...+++.+|...|..+.++|. ...|+++|.|+++++||++.... ....+..|.+.|.++.+.. +.+|+
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---plydI~~h~DKvl~vdW~~-~~~Iv 404 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---PLYDIAGHNDKVLSVDWNE-GGLIV 404 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---cceeeccCCceEEEEeccC-CceEE
Confidence 98764 456778999999999999874 45689999999999999975431 1245667788899999985 55899
Q ss_pred EEeCCCeEEEEEc
Q 017296 315 TAGWDRRVRIYNY 327 (374)
Q Consensus 315 s~~~dg~v~iwd~ 327 (374)
+||.|.+++|+.-
T Consensus 405 SGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 405 SGGADNKLRIFKG 417 (423)
T ss_pred eccCcceEEEecc
Confidence 9999999999843
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=183.22 Aligned_cols=255 Identities=20% Similarity=0.325 Sum_probs=181.7
Q ss_pred ecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccc----------eeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 15 RGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
--|.+.|+.+++-|+. .+++|++..+.|.|||..... +-..+.+|... ...++|+.... -+|++++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~~-g~Lls~~ 197 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQE-GTLLSGS 197 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccccc-eeEeecc
Confidence 4699999999998876 567788889999999975421 11256677652 45567766433 3789999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|++|++||+....... +... ++
T Consensus 198 ~d~~i~lwdi~~~~~~~-~~~~-------------------------------------------------------p~- 220 (422)
T KOG0264|consen 198 DDHTICLWDINAESKED-KVVD-------------------------------------------------------PK- 220 (422)
T ss_pred CCCcEEEEeccccccCC-cccc-------------------------------------------------------ce-
Confidence 99999999997542110 0000 00
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-CC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~-~~ 242 (374)
....+-. ..| .. ..+.+. ....+.+.++|+.+.|||+|. ..
T Consensus 221 ~~~~~h~-~~V-----------eD-----------------------V~~h~~---h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 221 TIFSGHE-DVV-----------ED-----------------------VAWHPL---HEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred EEeecCC-cce-----------eh-----------------------hhcccc---chhhheeecCCCeEEEEEcCCCCC
Confidence 0000000 000 00 001110 112477888999999999995 34
Q ss_pred CceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCC
Q 017296 243 IPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDR 320 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg 320 (374)
++....++|..+|+|++|+| +...+||||.|++|+|||++..... ...+..|...|..+.|||. ...+||++.|+
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 56677889999999999987 4556799999999999999754321 1234567888999999996 55689999999
Q ss_pred eEEEEEccC--------------CeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRK--------------GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
++.+||+.. .+.+....||...|....|+|+.. .|+|+++|+.+.||+..
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999953 244677889999999999999888 67899999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=173.38 Aligned_cols=264 Identities=19% Similarity=0.258 Sum_probs=178.9
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.....+.||+++|+++.|+-+|.+|+||+.+|.|+||+..++...-.+.. ....+.=+.+.+ ....|+.|+.||.+
T Consensus 97 e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~--e~~dieWl~WHp--~a~illAG~~DGsv 172 (399)
T KOG0296|consen 97 EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ--EVEDIEWLKWHP--RAHILLAGSTDGSV 172 (399)
T ss_pred cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec--ccCceEEEEecc--cccEEEeecCCCcE
Confidence 36778999999999999999999999999999999999988765443321 122344445555 45789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
-+|.+.++.. .+..++|.+ +. ... .+.+++++ ++.+
T Consensus 173 Wmw~ip~~~~-------~kv~~Gh~~-----------------~c-----------------t~G-~f~pdGKr--~~tg 208 (399)
T KOG0296|consen 173 WMWQIPSQAL-------CKVMSGHNS-----------------PC-----------------TCG-EFIPDGKR--ILTG 208 (399)
T ss_pred EEEECCCcce-------eeEecCCCC-----------------Cc-----------------ccc-cccCCCce--EEEE
Confidence 9999987421 111111100 00 000 12244544 4456
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCC----------CcCCC-CCccee------EEE--------------------
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSP----------NFSSK-GRGMCM------AVQ-------------------- 211 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~------~~~-------------------- 211 (374)
..|++|++||+.+++.+.++.+......+ ..... ....+. .+.
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 67999999999999988777632210000 00000 000000 000
Q ss_pred -eeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE
Q 017296 212 -AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI 290 (374)
Q Consensus 212 -~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~ 290 (374)
.+.+.. ...++.+.|+-||+|.|||+... .++..-.|..+|..+.|.+ -.++++++.+|.|+.||.+.+ + +
T Consensus 289 ve~~~~s-s~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG--~--l 360 (399)
T KOG0296|consen 289 VESIPSS-SKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG--Q--L 360 (399)
T ss_pred hhhcccc-cccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc--c--e
Confidence 011100 11124677999999999999753 2333446999999999988 467899999999999998754 3 3
Q ss_pred EEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 291 KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 291 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
......|+..|..++++||.+++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 34567888999999999999999999999999999864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=188.12 Aligned_cols=332 Identities=21% Similarity=0.226 Sum_probs=210.1
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
.||+|..+-..++||++.|++|...|.|.+|+|||.||+|+||.+.+|+|+.+.... ..|.+++|++..+.-.|+.+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEE
Confidence 589999999999999999999999999999999999999999999999999887643 34889999986554444444
Q ss_pred cccCeEEEEecCCCCCCCC-CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCC-CCCC
Q 017296 83 GRDGTVKCWDIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV-PAEG 160 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (374)
-. .++.+-+..-|..... +.. ...+... ....+......+.. ......+.+-.+.+ ....+...+ ....
T Consensus 462 ~~-~~~~ivnp~~G~~~e~~~t~---ell~~~~---~~~~p~~~~~~W~~-~~~~e~~~~v~~~I-~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 462 VG-ECVLIVNPIFGDRLEVGPTK---ELLASAP---NESEPDAAVVTWSR-ASLDELEKGVCIVI-KHPKSIRQVTWHRK 532 (733)
T ss_pred ec-CceEEeCccccchhhhcchh---hhhhcCC---CccCCcccceeech-hhhhhhccceEEEE-ecCCccceeeeecC
Confidence 33 4466766665521110 000 0000000 00000000000000 00000010000000 000111111 1344
Q ss_pred CceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 161 PKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 161 ~~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
+.|++++... ...|.|..+...+....+. ...+..+.+ .|.|..+ .+++++ ...|+|||+
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~------------kskG~vq~v-~FHPs~p----~lfVaT-q~~vRiYdL 594 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFR------------KSKGLVQRV-KFHPSKP----YLFVAT-QRSVRIYDL 594 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchh------------hcCCceeEE-EecCCCc----eEEEEe-ccceEEEeh
Confidence 5676655433 3457777766544322221 112333333 3555432 355555 468999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
... ..+..+.-....|..+++++.|.-++.++.|+.+..+|++..+-. .+.+..|...+++++||+-=.++++|+.
T Consensus 595 ~kq-elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP---yk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 595 SKQ-ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP---YKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred hHH-HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch---hHHhhhhhhhhhhhhhccccceeeeecC
Confidence 652 223333334567899999999999999999999999999754321 2345567778999999999999999999
Q ss_pred CCeEEEEEc------cCC---eEEEEecccCCc----eEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 319 DRRVRIYNY------RKG---SALAILKYHHAT----CNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 319 dg~v~iwd~------~~~---~~~~~~~~h~~~----v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
||++.||.- ... -+++.+++|... |..+.|+|...+|+|+++|++||+|.
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 999999832 111 246788999865 89999999999999999999999983
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=188.79 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=185.2
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeee-eeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
.-+...|+++.|+++|.+|+.|-.+|.|.|||..+.+.+..+.+ |. ..+-++++.. ..+.+|+.|+.|..+|+
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~~----~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWNS----SVLSSGSRDGKILNHDV 287 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC--ceeEEEeccC----ceEEEecCCCcEEEEEE
Confidence 33489999999999999999999999999999988887777766 43 4577787763 67889999999999999
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
+..+..-. .... ....
T Consensus 288 R~~~~~~~------~~~~----------------------------------------------------------H~qe 303 (484)
T KOG0305|consen 288 RISQHVVS------TLQG----------------------------------------------------------HRQE 303 (484)
T ss_pred ecchhhhh------hhhc----------------------------------------------------------ccce
Confidence 86521100 0000 0001
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~ 253 (374)
|.-+ ...+ ....+++|+.|+.+.|||... ..+...+..|..
T Consensus 304 VCgL----------------------------------kws~----d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~a 344 (484)
T KOG0305|consen 304 VCGL----------------------------------KWSP----DGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTA 344 (484)
T ss_pred eeee----------------------------------EECC----CCCeeccCCCccceEeccCCC-ccccEEEeccce
Confidence 1100 0111 112588899999999999854 356777889999
Q ss_pred CeEEEEEecCCCce-EEE--ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe--CCCeEEEEEcc
Q 017296 254 PVLCLSIDESCNGG-ISG--GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG--WDRRVRIYNYR 328 (374)
Q Consensus 254 ~v~~~~~~~~~~~~-~s~--s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~v~iwd~~ 328 (374)
.|..++|+|....+ |+| +.|+.|++||.... ... ..+. ....|.++.|+|..+-|+++. .+..|.||+..
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--~~i--~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG--ARI--DSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC--cEe--cccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 99999999865554 554 56999999998643 222 1121 235699999999987766554 46789999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.+.+..+.+|...|..++++|||+.+++|+.|.|+|+|++++
T Consensus 420 s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 420 SMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999999999999999999999999999999999986
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=176.30 Aligned_cols=215 Identities=21% Similarity=0.365 Sum_probs=164.1
Q ss_pred CCCCCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
+++..|++.++.|...|.++.|++ .+..++++|-|++||+|+...++.+.++.+|. ..|....|+|. ..+.++++|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~-~~nlfas~S 167 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPH-IPNLFASAS 167 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc--cEEEEEecCCC-CCCeEEEcc
Confidence 677889999999999999999997 45668888999999999999888888988876 45888889986 458999999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|+++|+||++.... + +.+..++.
T Consensus 168 gd~~l~lwdvr~~gk---~-~~i~ah~~---------------------------------------------------- 191 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGK---F-MSIEAHNS---------------------------------------------------- 191 (311)
T ss_pred CCceEEEEEecCCCc---e-eEEEeccc----------------------------------------------------
Confidence 999999999975310 0 00000000
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
-+.+.. | ..+ +...+++|+.|+.|+.||+++-..
T Consensus 192 Eil~cd-------w---------------------------------~ky------~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 192 EILCCD-------W---------------------------------SKY------NHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred eeEeec-------c---------------------------------ccc------CCcEEEecCCCceEEEEehhhccc
Confidence 000000 0 001 112488899999999999998888
Q ss_pred ceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCe
Q 017296 244 PLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRR 321 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~ 321 (374)
|+..+.+|.-.|+.+.++|... .++++|.|=++|+||...... .......|...+..+.||+ ++.+||+.++|+.
T Consensus 226 pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds---~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS---AIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh---hhhhhhccceEEeccccccccCceeeecccccc
Confidence 8999999999999999987543 468999999999999864322 2233445666788888887 5778999999999
Q ss_pred EEEEEc
Q 017296 322 VRIYNY 327 (374)
Q Consensus 322 v~iwd~ 327 (374)
+.||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999973
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=189.28 Aligned_cols=250 Identities=20% Similarity=0.282 Sum_probs=180.5
Q ss_pred eeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
+.++.+|.. ++.++-|.+. .+..|+|++.|+.|+||++-. +++ +++...|...+. ..
T Consensus 207 ~~~~~gH~k--gvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~-------lrtf~gH~k~Vr--------d~---- 264 (503)
T KOG0282|consen 207 SHNLSGHTK--GVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRC-------LRTFKGHRKPVR--------DA---- 264 (503)
T ss_pred eeeccCCcc--ccchhhhccc-eeeEEEecCCCceEEEEEEecCcce-------ehhhhcchhhhh--------hh----
Confidence 455656653 4777777763 346889999999999999965 332 222222211000 00
Q ss_pred CCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEE
Q 017296 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (374)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (374)
.+...+ .-+.+++.|+.+++||++||+++.++...... .++
T Consensus 265 -----------------------~~s~~g--~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~--------------~cv 305 (503)
T KOG0282|consen 265 -----------------------SFNNCG--TSFLSASFDRFLKLWDTETGQVLSRFHLDKVP--------------TCV 305 (503)
T ss_pred -----------------------hccccC--CeeeeeecceeeeeeccccceEEEEEecCCCc--------------eee
Confidence 011112 23557788999999999999999888643211 122
Q ss_pred eeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEE
Q 017296 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~ 291 (374)
.|.|+. ...+++|..|+.|+.||+|++ ..++....|..+|..+.|-+.+..+++++.|+++++|+.+.... +.
T Consensus 306 kf~pd~---~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---ik 378 (503)
T KOG0282|consen 306 KFHPDN---QNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---IK 378 (503)
T ss_pred ecCCCC---CcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---ch
Confidence 455543 236889999999999999974 45777788999999999999999999999999999999864321 11
Q ss_pred EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE---EEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 292 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA---LAILKYHH--ATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
.....+.....++..+|+++++++-+.|+.|.+|.....-+ -+.+.+|. +.-..+.|||||++|+||+.||.|.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 22223345578899999999999999999999998754322 34577886 45667899999999999999999999
Q ss_pred ecCC
Q 017296 367 WELY 370 (374)
Q Consensus 367 W~~~ 370 (374)
||+.
T Consensus 459 wdwk 462 (503)
T KOG0282|consen 459 WDWK 462 (503)
T ss_pred eech
Confidence 9985
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=188.33 Aligned_cols=234 Identities=20% Similarity=0.236 Sum_probs=152.4
Q ss_pred CCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcccc--------eeeeeeeeeceeeeEEeccCCcccccee
Q 017296 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
+++..+.||.++|.+|+|+|+ +.+|+|||.|++|+|||+.++. ++..+.+|. ..+.+++|++. +...+
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~sVaf~P~-g~~iL 141 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKISIIDWNPM-NYYIM 141 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--CcEEEEEECCC-CCeEE
Confidence 577899999999999999996 7899999999999999987542 122344554 34778888874 22356
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
+|++.|++|++||+.+++.. ..+ .
T Consensus 142 aSgS~DgtIrIWDl~tg~~~----~~i------------~---------------------------------------- 165 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRA----FQI------------N---------------------------------------- 165 (568)
T ss_pred EEEeCCCeEEEEECCCCcEE----EEE------------e----------------------------------------
Confidence 78889999999998765210 000 0
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
. . ..| .. ..+.++ + ..+++++.|+.|++||++
T Consensus 166 --------~-~-~~V-----------~S-----------------------lswspd---G-~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 166 --------M-P-KKL-----------SS-----------------------LKWNIK---G-NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred --------c-C-CcE-----------EE-----------------------EEECCC---C-CEEEEEecCCEEEEEECC
Confidence 0 0 000 00 011111 1 146667788888888887
Q ss_pred CCCCceeeeecCccCeEEEE-----EecCCCceEEEecCC----eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 240 NPGIPLTAMKVHLEPVLCLS-----IDESCNGGISGGADQ----KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~-----~~~~~~~~~s~s~D~----~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
+ ...+..+.+|...+.... |.+++..++++|.|+ +|+|||++... .......+......+......+++
T Consensus 198 s-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 198 K-QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred C-CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCC
Confidence 6 345566777876544332 346667788888774 79999997432 222222233222333344456678
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEE--EecccCCceEEEEEeCCC
Q 017296 311 KIAATAGWDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~ 352 (374)
.++++|+.|++|++|++..+.... .+. +..+..+++|.|+.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 899999999999999997764322 222 45678889999963
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=172.35 Aligned_cols=285 Identities=17% Similarity=0.273 Sum_probs=208.5
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
...|.++...+....++||+.|..+.++|....+.+..+.+|... +..+.+.+ +...+++++.|..||+|......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHK--DLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE--EEEEEecc--chhheeecCCcceEEeecccccc
Confidence 467888888877789999999999999999999989999888743 66777766 44578899999999999987542
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
.. . ....+.. +.. .. ...+.+.|+ ++++.|+++-+.
T Consensus 295 ~~---~-~~~~h~~--------------------~V~--~l-----------------s~h~tgeYl-lsAs~d~~w~Fs 330 (506)
T KOG0289|consen 295 EP---T-SSRPHEE--------------------PVT--GL-----------------SLHPTGEYL-LSASNDGTWAFS 330 (506)
T ss_pred Cc---c-ccccccc--------------------cce--ee-----------------eeccCCcEE-EEecCCceEEEE
Confidence 11 0 0000000 000 00 001223454 456678999999
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
|++++.++...... ...-.+ ....|.|+ ...+.+|+.||.|+|||+.++. ....|.+|+.+|..
T Consensus 331 d~~~g~~lt~vs~~---------~s~v~~--ts~~fHpD----gLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 331 DISSGSQLTVVSDE---------TSDVEY--TSAAFHPD----GLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKA 394 (506)
T ss_pred EccCCcEEEEEeec---------ccccee--EEeeEcCC----ceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeE
Confidence 99999987766431 011111 12235543 3467889999999999998754 67789999999999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC--eEEEE
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG--SALAI 335 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~--~~~~~ 335 (374)
++|..+|-++++++.|+.|++||++....-..+. + ....++.++.|.+.|++|+.++.|=+|.+++-.+. ..+..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~--l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ--L-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceee--c-cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 9999999999999999999999997543211111 1 12236899999999999999988888888765433 34566
Q ss_pred ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 336 LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 336 ~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+..|.+..+.+.|.-+.++++++|.|...+++.+
T Consensus 472 ~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7778888999999999999999999999998765
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=181.46 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=171.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.+.++.||..+|..|.||||.++|++++.|..+++||..+|.....+. +..+..+.+++|.| |+.++++|+.|+++
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCP--DGFRFVTGSPDRTI 336 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEcc--CCceeEecCCCCcE
Confidence 5688999999999999999999999999999999999999998766543 33344578888888 77899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..||.+.+.... .. .... ..+.. ...+ .+++++++++
T Consensus 337 ~~wdlDgn~~~~---W~----gvr~---------------------------~~v~d--------lait-~Dgk~vl~v~ 373 (519)
T KOG0293|consen 337 IMWDLDGNILGN---WE----GVRD---------------------------PKVHD--------LAIT-YDGKYVLLVT 373 (519)
T ss_pred EEecCCcchhhc---cc----cccc---------------------------ceeEE--------EEEc-CCCcEEEEEe
Confidence 999997642100 00 0000 00000 0011 2334555444
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
.|..|++++.++......+.. ....+.+. . +.+..++++.-.+..|++||++.+ ..+..+
T Consensus 374 -~d~~i~l~~~e~~~dr~lise-----------~~~its~~---i----S~d~k~~LvnL~~qei~LWDl~e~-~lv~kY 433 (519)
T KOG0293|consen 374 -VDKKIRLYNREARVDRGLISE-----------EQPITSFS---I----SKDGKLALVNLQDQEIHLWDLEEN-KLVRKY 433 (519)
T ss_pred -cccceeeechhhhhhhccccc-----------cCceeEEE---E----cCCCcEEEEEcccCeeEEeecchh-hHHHHh
Confidence 578999998876432211111 00111111 1 112235666778999999999864 445667
Q ss_pred ecCccCe--EEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Q 017296 249 KVHLEPV--LCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRI 324 (374)
Q Consensus 249 ~~h~~~v--~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~i 324 (374)
.||...- ..=+|- .+...+++||.|+.|.+|+...+ + +..++.+|...|.+++++| +..++|||+.||+|||
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--k--ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--K--LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--c--eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 7887653 333442 23456799999999999987543 2 3456777888899999999 5667899999999999
Q ss_pred EEccC
Q 017296 325 YNYRK 329 (374)
Q Consensus 325 wd~~~ 329 (374)
|-...
T Consensus 510 Wg~~~ 514 (519)
T KOG0293|consen 510 WGPSD 514 (519)
T ss_pred ecCCc
Confidence 97654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=177.01 Aligned_cols=280 Identities=18% Similarity=0.253 Sum_probs=193.3
Q ss_pred CCCceeEEEEeCCCC--EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 17 H~~~V~~l~~~~~~~--~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
-..+|..|+|+|... +.+|+| ..|.+++..+-....++.-.. -.+.++.|.. ||..|+.|...|-|+++|+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEeccc
Confidence 357899999999653 455555 468899986654444332221 2356666765 67889999999999999965
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
+....+ .+..+....|.. .+++. ...++++|++|+.+
T Consensus 99 ~r~iLR--~~~ah~apv~~~----------------------------------------~f~~~-d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 99 SRVILR--QLYAHQAPVHVT----------------------------------------KFSPQ-DNTMLVSGSDDKVV 135 (487)
T ss_pred cHHHHH--HHhhccCceeEE----------------------------------------Eeccc-CCeEEEecCCCceE
Confidence 421000 000000001100 01111 23578899999999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
++||+.+......+..+. ....|.++ .+ .+...+++|+.||.||+||++........+ .|..|
T Consensus 136 k~~d~s~a~v~~~l~~ht----------DYVR~g~~---~~---~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~p 198 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHT----------DYVRCGDI---SP---ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCP 198 (487)
T ss_pred EEEEcCCcEEEEEecCCc----------ceeEeecc---cc---CCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCc
Confidence 999999987644554321 12222222 11 122358899999999999998754444444 48999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
|..+.+-|.+..+++++ .+.+|+||+-.+ ...+ ..+..|...|+|+.+..++.-|+||+.||.|++||..+-+.+.
T Consensus 199 Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G--~qll-~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAG-GNSVKVWDLTTG--GQLL-TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred eeeEEEcCCCCEEEEcC-CCeEEEEEecCC--ceeh-hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 99999998887666664 567999999633 2222 2233366789999999999999999999999999988888777
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.+. -+++|.+++.+|+++.++.|-.||.+.+=
T Consensus 275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eee-cccceeeEEecCCCceEEEecccceeeee
Confidence 775 67899999999999999999999998764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=173.04 Aligned_cols=248 Identities=24% Similarity=0.422 Sum_probs=174.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++...+.+|...+..+.|++++++|++++.|+.+++||..+++.+..+..|. ..+.++.+.+ +++.+++++.|+.+
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~~~~~~~~i 117 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSP--DGRILSSSSRDKTI 117 (289)
T ss_pred CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcC--CCCEEEEecCCCeE
Confidence 4667888999999999999999999999999999999998877666666554 2477777776 34677777889999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++.. ..+....... .+.. +.+. .. +++++
T Consensus 118 ~~~~~~~~~~~----~~~~~~~~~i--------------------~~~~------------------~~~~-~~-~l~~~ 153 (289)
T cd00200 118 KVWDVETGKCL----TTLRGHTDWV--------------------NSVA------------------FSPD-GT-FVASS 153 (289)
T ss_pred EEEECCCcEEE----EEeccCCCcE--------------------EEEE------------------EcCc-CC-EEEEE
Confidence 99999864311 0000000000 0000 0011 12 44555
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..++.+++||+++++....+..+. ....++ .+.++ + ..+++++.||.|++||++. ......+
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~----------~~i~~~---~~~~~---~-~~l~~~~~~~~i~i~d~~~-~~~~~~~ 215 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHT----------GEVNSV---AFSPD---G-EKLLSSSSDGTIKLWDLST-GKCLGTL 215 (289)
T ss_pred cCCCcEEEEEccccccceeEecCc----------cccceE---EECCC---c-CEEEEecCCCcEEEEECCC-Cceecch
Confidence 568999999999877655554211 011111 12221 2 2577888899999999975 3456667
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
..|..++.++.+++++..+++++.|+.+++||++... . ...+..+...+.+++|+|+++++++++.|+.+++|+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE--C--VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce--e--EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 6888899999999987777777779999999986432 1 223335666799999999999999999999999995
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=186.34 Aligned_cols=350 Identities=19% Similarity=0.261 Sum_probs=210.0
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEec--CCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc--cC
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--DG 86 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s--~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D~ 86 (374)
-+.+..|+++++|++|+++|+++++|- ..-.+|||++.....+..+..|. .++.+++|++ ...+++|.|. |.
T Consensus 71 ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHK--Y~vtcvaFsp--~~kyvvSVGsQHDM 146 (1080)
T KOG1408|consen 71 SHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHK--YNVTCVAFSP--GNKYVVSVGSQHDM 146 (1080)
T ss_pred hheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhcc--ccceeeeecC--CCcEEEeeccccce
Confidence 345667899999999999999999986 44569999998877777776665 5688999988 4577887664 66
Q ss_pred eEEEEecCCCCCCCCCce---------------eeeecceee--eeeeeeccccccccccC------CCC----------
Q 017296 87 TVKCWDIENGGLSSNPSL---------------TIKTNSYHF--CKLSLVKEPYANAKQAN------EPK---------- 133 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~---------- 133 (374)
.|-+||.+.+......++ .+...+.|. +-+....+-.+.....+ ...
T Consensus 147 IVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg 226 (1080)
T KOG1408|consen 147 IVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACG 226 (1080)
T ss_pred EEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhc
Confidence 788998765422211111 000111111 11111111000000000 000
Q ss_pred ------ccc---------ccccCceeecCCCCCCCC-CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCC-
Q 017296 134 ------DCY---------EREVGETVDTDSLCDSKD-DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS- 196 (374)
Q Consensus 134 ------~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~- 196 (374)
.++ ++..+...+....+.... ..-.-..++++ .|-.+++|++++.++-.-+.+++.....+.
T Consensus 227 ~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~-cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d 305 (1080)
T KOG1408|consen 227 VGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIA-CGCAKGMVRLFNPETLDYAGTLPRSHALGSD 305 (1080)
T ss_pred CcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEE-EeeccceeeecCcchhhhccccccccccccc
Confidence 000 000000000000000000 00011234444 455579999999887665556554322111
Q ss_pred --------CCcCCCC---CcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc--eeeeecCccCeEEEEEec-
Q 017296 197 --------PNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDE- 262 (374)
Q Consensus 197 --------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~--~~~~~~h~~~v~~~~~~~- 262 (374)
+.++... ..-+++. .|-+. ...+..-++|..|.+||++....+ ...+-+|...|..+..-|
T Consensus 306 ~a~~~q~~~~~s~~~~a~fPD~IA~-~Fdet----~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~ 380 (1080)
T KOG1408|consen 306 TANLSQPEPKNSESSPAIFPDAIAC-QFDET----TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC 380 (1080)
T ss_pred hhhcccccccccccCcccCCceeEE-EecCC----CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc
Confidence 1111000 0112222 13211 124677899999999999875432 344557887777765522
Q ss_pred -----C-----CCceEEEecCCeEEEEEcCCCCCeEEEEEe---------------------------------eecCCC
Q 017296 263 -----S-----CNGGISGGADQKIVLYNLDHSTGSCVIKKE---------------------------------INLERP 299 (374)
Q Consensus 263 -----~-----~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---------------------------------~~~~~~ 299 (374)
. .-.|.++|.|++|||||++..+....++.. .-..+-
T Consensus 381 nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 381 NVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred cccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc
Confidence 1 124789999999999999863322221100 001234
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC---CCCEEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS---DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp---~~~~las~s~D~~v~~W~~~ 370 (374)
+++++++||++++||+|..-|+++|+++...+.+-.+.+|+..|.++.|+- ..++|||+|.|..|.++|.-
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 689999999999999999999999999998888888999999999999983 35799999999999999873
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=179.28 Aligned_cols=300 Identities=18% Similarity=0.260 Sum_probs=200.9
Q ss_pred CeEEeecCCCceeEEEEeCCCC---EEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeee-cc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~---~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~ 83 (374)
-..+|.||+++|+|+++-|... +++||+.|+.|++|.+...+ ++..+.+|. ..++++.. ...+.+ .+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a---~~~~~~~~~ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA---RSSVMTCKA 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe---eeeEEEeec
Confidence 4678899999999999988776 89999999999999997433 344554432 33333322 123333 37
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|+++.+||.+..+.. ......+ .. ..... -|. ...+..+.+
T Consensus 119 ad~~v~vw~~~~~e~~-----~~~~~rf-------~~-k~~ip-------LcL------------------~~~~~~~~~ 160 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVF-----LLAVLRF-------EI-KEAIP-------LCL------------------AALKNNKTF 160 (764)
T ss_pred cCceEEEeecCCCcee-----eehheeh-------hh-hhHhh-------HHH------------------hhhccCCcE
Confidence 8999999999433210 0000000 00 00000 000 011233457
Q ss_pred EEEcccCCCeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
+++.|+.+..|.++.-.+++ ....+.++ ..-.+.+. |.... .+...++++|+|.+||||.+.-.
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~GH--------~DWIrsl~-----f~~~~-~~~~~laS~SQD~yIRiW~i~~~ 226 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEGH--------TDWIRSLA-----FARLG-GDDLLLASSSQDRYIRIWRIVLG 226 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeecc--------chhhhhhh-----hhccC-CCcEEEEecCCceEEEEEEEEec
Confidence 78888888888888654433 34444432 22222221 11111 12346889999999999988532
Q ss_pred C--------------------Cce----------eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEE
Q 017296 242 G--------------------IPL----------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 242 ~--------------------~~~----------~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~ 291 (374)
+ ... ..+.||.+.|.++.++|.+..++++|.|.++.+|.-+..+|.+...
T Consensus 227 ~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~ 306 (764)
T KOG1063|consen 227 DDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV 306 (764)
T ss_pred CCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence 2 011 1245899999999999999899999999999999887777765433
Q ss_pred ---EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe---EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 292 ---KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS---ALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 292 ---~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
.++.....+..+..|+|++..+++-+.-|-.++|-.++.. +...+.||...|..|+|+|.|++|.|+|.|.|-|
T Consensus 307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTR 386 (764)
T KOG1063|consen 307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTR 386 (764)
T ss_pred EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccccee
Confidence 3344444578899999999999999999999999844432 2335679999999999999999999999999999
Q ss_pred Eec
Q 017296 366 LWE 368 (374)
Q Consensus 366 ~W~ 368 (374)
++-
T Consensus 387 lFa 389 (764)
T KOG1063|consen 387 LFA 389 (764)
T ss_pred eec
Confidence 964
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=154.17 Aligned_cols=256 Identities=16% Similarity=0.206 Sum_probs=172.6
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce--e---eeeeeeeceeeeEEeccCCccccceeeecc-ccCeE
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--V---SSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTV 88 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v 88 (374)
+-|++.|+|.+|+|.|.+++|||.|++|++--.+...+ . ..+.-|.....-+++--.+..++..|+|++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 46999999999999999999999999999876543221 1 122234333233333345555567788765 67777
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
-+=|...|+.. .....+..|+-++. .+ ...++++|
T Consensus 166 y~tdc~~g~~~----~a~sghtghilaly-------------------sw----------------------n~~m~~sg 200 (350)
T KOG0641|consen 166 YITDCGRGQGF----HALSGHTGHILALY-------------------SW----------------------NGAMFASG 200 (350)
T ss_pred EEeecCCCCcc----eeecCCcccEEEEE-------------------Ee----------------------cCcEEEcc
Confidence 77777766321 11111111111110 00 03468899
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcc-eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM-CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++|++|++||++-..++.++...... .++ ..++.....+ +.+. ++++|..|.+..+||++- +.+++.
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~---------~glessavaav~vd-psgr-ll~sg~~dssc~lydirg-~r~iq~ 268 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHD---------GGLESSAVAAVAVD-PSGR-LLASGHADSSCMLYDIRG-GRMIQR 268 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccC---------CCcccceeEEEEEC-CCcc-eeeeccCCCceEEEEeeC-Cceeee
Confidence 99999999999988877776532111 110 1111112112 2233 688899999999999985 567888
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+..|...|.|+.|+|...+++++|.|..|++=|+...-...+.......|.+.+-.+.|+|+.--+++.+.|+++.+|-+
T Consensus 269 f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 88899999999999999999999999999999997542222222223345666777899999888999999999999965
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=161.34 Aligned_cols=296 Identities=19% Similarity=0.270 Sum_probs=197.0
Q ss_pred EEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccce------e-ee----eeeeece--eeeEEeccCCccccc
Q 017296 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT------V-SS----SWVHSAA--HGIVSVATGPSIGLN 77 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~------~-~~----~~~~~~~--~~~~~~~~~~~~~~~ 77 (374)
-..+-|.+.|+.|...+ .|++++||+.||.|.|||++.... + .. -..|... ..|..+.|-|. |.-
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtG 115 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTG 115 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCc
Confidence 34567999999999986 789999999999999999865320 0 00 0113222 23556666664 334
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.+.|++-|.++|+||..+-+.. .. |.. . .+..+....+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a----~~-----F~m---------------------------e------~~VYshamSp 153 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEA----VD-----FKM---------------------------E------GKVYSHAMSP 153 (397)
T ss_pred eeecccccceEEEeecccceee----EE-----eec---------------------------C------ceeehhhcCh
Confidence 7889999999999999763210 00 000 0 0000111111
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
...+..++++|..+-.|++=|+.+|...-.+.++ +.-++++. ..|. ....+++|+.||.||+||
T Consensus 154 ~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH------------r~~vlaV~-Wsp~---~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 154 MAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH------------RDGVLAVE-WSPS---SEWVLATGSADGAIRLWD 217 (397)
T ss_pred hhhcceEEEEecCCCcEEEEeccCCcceeeeccc------------cCceEEEE-eccC---ceeEEEecCCCceEEEEE
Confidence 1223567888999999999999999876666543 11223332 2221 223578899999999999
Q ss_pred ccCCCCceee--------------eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC----
Q 017296 238 IRNPGIPLTA--------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP---- 299 (374)
Q Consensus 238 l~~~~~~~~~--------------~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~---- 299 (374)
+|...-++.. ...|...++.+++..++.++++.+.|..+++|+...+........++ .+..
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~ 296 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSF 296 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc-cccccccc
Confidence 9864222222 33567789999999899999999999999999987543322111111 1111
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+. +. +-+...++--=.++++.++++.+++++..+..|-..|.+.++.|+=+...+++.|+.+..|..
T Consensus 297 ~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 297 AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 111 11 223333443345689999999999999999999999999999999999999999999999965
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=176.58 Aligned_cols=246 Identities=16% Similarity=0.257 Sum_probs=179.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
...+.+|.|-.++|+.+.|.+++..+++++.|+.+++||....+...++.+|... +.++-+.- ....+++|+.|.+
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~--~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKL--SHSRVVSGSADRT 284 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc--eeeehhhc--cccceeeccccch
Confidence 3477889999999999999999999999999999999999999999999898744 66665544 2345999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+|+||+..+.+...+. +. ..|.++... ...+++
T Consensus 285 iK~WDl~k~~C~kt~l-------------------------~~--S~cnDI~~~--------------------~~~~~S 317 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVL-------------------------PG--SQCNDIVCS--------------------ISDVIS 317 (459)
T ss_pred hhhhhhhhhheecccc-------------------------cc--ccccceEec--------------------ceeeee
Confidence 9999998764322110 00 011111100 123567
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
|-.|++||+||.+++.+....+.+.. +.++ +.+.+...+++.+.|.++.+.|++... ...+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg~-------------vtSl-----~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~ 378 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGGR-------------VTSL-----DLSMDGLELLSSSRDDTLKVIDLRTKE-IRQT 378 (459)
T ss_pred cccccceEEEeccCCceeeEeecCcc-------------eeeE-----eeccCCeEEeeecCCCceeeeeccccc-EEEE
Confidence 77899999999999887766653211 1111 112334468888999999999998743 2333
Q ss_pred eecC----ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 248 MKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 248 ~~~h----~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
+... ....+.+.|+|++.++++||.||.|.+|++.+ +++............|++++|+|-|.++++++.++.+.
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t--gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT--GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccCCCcEEEEEccC--ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 3221 23488899999999999999999999999864 44443333333334799999999999999999999999
Q ss_pred EE
Q 017296 324 IY 325 (374)
Q Consensus 324 iw 325 (374)
+|
T Consensus 457 lW 458 (459)
T KOG0288|consen 457 LW 458 (459)
T ss_pred ec
Confidence 99
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=160.65 Aligned_cols=191 Identities=17% Similarity=0.314 Sum_probs=149.0
Q ss_pred ceEEEcccCCCeEEEEecCCCcee---EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
..++++++.|++||+|++..+... ..+... +.-..+. .++.| .+. +|++||.|.++-||.=
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~-------hkrsVRs-----vAwsp---~g~-~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDG-------HKRSVRS-----VAWSP---HGR-YLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEecccc-------chheeee-----eeecC---CCc-EEEEeeccceEEEeec
Confidence 347889999999999999864322 222111 1101111 12322 233 6899999999999975
Q ss_pred cCCC-CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 239 RNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 239 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
.... ..+.++.||...|.|++|++++.+||++|.|.++-+|.++... .......++.|...|..+.|+|...+|+|++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 4222 3577889999999999999999999999999999999987432 2333345667878899999999999999999
Q ss_pred CCCeEEEEEccCC---eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 318 WDRRVRIYNYRKG---SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 318 ~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.|.+|++|.-.++ ++.+++.+|.+.|++++|+|.|..|++++.|++|+||..
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 9999999987633 568899999999999999999999999999999999983
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=162.58 Aligned_cols=247 Identities=15% Similarity=0.164 Sum_probs=170.7
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+.++.|+. ++..+++++.|.+++++|..+|.+.. .+....+......
T Consensus 15 ~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~----ti~skkyG~~~~~------------------------- 63 (311)
T KOG1446|consen 15 GKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVK----TINSKKYGVDLAC------------------------- 63 (311)
T ss_pred CceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceee----EeecccccccEEE-------------------------
Confidence 4477888877 67899999999999999999885321 1100000000000
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
++......+..+...|.+||+-++.+.+.++-+.++. .....+++ .| ...
T Consensus 64 -------------Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~--------~~V~sL~~-----sP----~~d 113 (311)
T KOG1446|consen 64 -------------FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK--------KRVNSLSV-----SP----KDD 113 (311)
T ss_pred -------------EecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC--------ceEEEEEe-----cC----CCC
Confidence 0011112233344457899999999999988887542 11111111 11 223
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee-cCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN-LERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v 301 (374)
.+++++.|++|++||+|.... .-.+ +...-...++||+|..+|.+...+.|+|||++......-....+. ......
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~c-qg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew 190 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKKC-QGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEW 190 (311)
T ss_pred eEEecccCCeEEeeEecCCCC-ceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccce
Confidence 689999999999999996443 2222 233344578999999999998888999999975422221122222 223457
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce---EEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC---NAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v---~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
..+.|||||++|+.+...+.+.+.|.-+|..+.++..+.+.- .+..|+||++++.+|+.||+|.+|++..++
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 789999999999999999999999999999888888776432 567899999999999999999999997765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-21 Score=179.64 Aligned_cols=235 Identities=14% Similarity=0.184 Sum_probs=156.5
Q ss_pred EecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeee
Q 017296 35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (374)
Q Consensus 35 s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~ 114 (374)
+|+.++.+++|+......+..+.+|. ..|.+++|++. +++.|+||+.|++||+||+.++..... .+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~--~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~---~i-------- 114 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHT--SSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVK---EI-------- 114 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCC--CCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCcccc---cc--------
Confidence 36778899999987766677777775 35888999873 257899999999999999976421000 00
Q ss_pred eeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccC
Q 017296 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG 194 (374)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~ 194 (374)
.. ......+ ..+.|
T Consensus 115 -----~~----------------------------------------p~~~L~g-H~~~V-------------------- 128 (568)
T PTZ00420 115 -----KD----------------------------------------PQCILKG-HKKKI-------------------- 128 (568)
T ss_pred -----cc----------------------------------------ceEEeec-CCCcE--------------------
Confidence 00 0000000 00000
Q ss_pred CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC
Q 017296 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (374)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~ 274 (374)
.+ ..+.|+ +...+++++.|++|++||+++.. ....+. |...|.+++|++++..+++++.|+
T Consensus 129 -----------~s---Vaf~P~---g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 129 -----------SI---IDWNPM---NYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred -----------EE---EEECCC---CCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEecCC
Confidence 00 112221 22245788999999999998643 333443 567899999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCe-----EEEEECCCCCEEEEEeCCC----eEEEEEccC-CeEEEEec--ccCCc
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGI-----SGTSIRPDSKIAATAGWDR----RVRIYNYRK-GSALAILK--YHHAT 342 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~l~s~~~dg----~v~iwd~~~-~~~~~~~~--~h~~~ 342 (374)
.|++||++... .. ..+..|...+ ....|++++++|++++.|+ +|+|||++. ++++..+. .+.+.
T Consensus 190 ~IrIwD~Rsg~--~i--~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 190 HMHIIDPRKQE--IA--SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP 265 (568)
T ss_pred EEEEEECCCCc--EE--EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc
Confidence 99999997543 22 2344554433 2335679999999988774 799999985 55665443 33344
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 343 CNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 343 v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+......++|.++++|+.|++||+|++..+
T Consensus 266 L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 266 LIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 434444567899999999999999998643
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-21 Score=160.56 Aligned_cols=260 Identities=20% Similarity=0.300 Sum_probs=173.8
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc----eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
.+|.+-|.++.|...|+.++|+|.|++|+|||+.... +......|. ..+..+.+.+..-|+.+++++.|+++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--GSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--CcEEEEEecCccccceEEEEecCCceee
Confidence 4899999999999999999999999999999965432 233333444 3477788876656789999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
|.=+.-... .. +..++-.+.-.
T Consensus 88 WEE~~~~~~--------~~--------------------------------------------------~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 88 WEEQEKSEE--------AH--------------------------------------------------GRRWVRRTTLV 109 (361)
T ss_pred eeecccccc--------cc--------------------------------------------------cceeEEEEEee
Confidence 985321000 00 00000000000
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc-----e
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-----L 245 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~-----~ 245 (374)
|..-.|.|+ .|.|. ..| ..+++++.||+||||+.-.+... .
T Consensus 110 DsrssV~DV--------------------------------~FaP~-hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 110 DSRSSVTDV--------------------------------KFAPK-HLG-LKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred cCCcceeEE--------------------------------Eecch-hcc-eEEEEeccCcEEEEEecCCccccccchhh
Confidence 000000000 11111 111 24677777888888776433110 0
Q ss_pred e-------eeecCccCeEEEEEecC---CCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-
Q 017296 246 T-------AMKVHLEPVLCLSIDES---CNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD- 309 (374)
Q Consensus 246 ~-------~~~~h~~~v~~~~~~~~---~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 309 (374)
. +...+..+..|+.+++. .+.++.|+.+ +.+++|.......++....++..+.+.|+.++|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 0 11135667888888643 2345555554 489999887666567666677778889999999996
Q ss_pred ---CCEEEEEeCCCeEEEEEccCC--------------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 310 ---SKIAATAGWDRRVRIYNYRKG--------------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 310 ---~~~l~s~~~dg~v~iwd~~~~--------------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
-.+||+|+.|| |+||.++.. +.+..+..|...|+.+.|+-.|..|+|.|.||+||+
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 23689999999 999999731 235567889999999999999999999999999999
Q ss_pred ecC
Q 017296 367 WEL 369 (374)
Q Consensus 367 W~~ 369 (374)
|..
T Consensus 315 Wka 317 (361)
T KOG2445|consen 315 WKA 317 (361)
T ss_pred hhh
Confidence 965
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=180.87 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=180.2
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee--eeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..+..|...|..+.|-|-...|++++-|.++++||+.+++.... +.+|.. .+.+++|.+. +...|++|+.|+.|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~--SvkS~cf~~~-n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG--SVKSECFMPT-NPAVFCTGGRDGEI 169 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc--ccchhhhccC-CCcceeeccCCCcE
Confidence 345567999999999999667899999999999999998877655 667764 3667777764 45789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.|||++........ .+|. .. +... ++.. ...+. ....-.+..+.+.
T Consensus 170 llWD~R~n~~d~~e---------~~~~-------~~-----------~~~~-n~~p-tpskp-----~~kr~~k~kA~s~ 215 (720)
T KOG0321|consen 170 LLWDCRCNGVDALE---------EFDN-------RI-----------YGRH-NTAP-TPSKP-----LKKRIRKWKAASN 215 (720)
T ss_pred EEEEEeccchhhHH---------HHhh-------hh-----------hccc-cCCC-CCCch-----hhccccccccccC
Confidence 99999764210000 0000 00 0000 0000 00000 0000001111111
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec-CCcEEEEeccCCCC----
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPGI---- 243 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-dg~i~iwdl~~~~~---- 243 (374)
. | ... +.+..| ++...|++++. |+.|++|||+++..
T Consensus 216 t----i-----------------------------~ss-vTvv~f-----kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 216 T----I-----------------------------FSS-VTVVLF-----KDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred c----e-----------------------------eee-eEEEEE-----eccceeeeccCCCcceEEEeeccccccccc
Confidence 1 0 000 111111 11225777665 99999999987532
Q ss_pred -ceeeeec--C---ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-CC-eEEEEECCCCCEEEE
Q 017296 244 -PLTAMKV--H---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PG-ISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 -~~~~~~~--h---~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~~-v~~~~~sp~~~~l~s 315 (374)
+....+. | ...+.++..|..|.++...+.|++|.+||+........ .....+. .. -..-..+||+.+++|
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~--~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV--AEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch--hhccCcccceeeeeeecCCCCceEec
Confidence 2222222 3 23688888899888888888899999999975432211 1111111 11 123457899999999
Q ss_pred EeCCCeEEEEEccCCeE-EEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCC
Q 017296 316 AGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPP 372 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~ 372 (374)
|++|..+.+|.+...+. ...+.+|.-.|.+++|.|..- -+||+|+|.++++|++.+.
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999987653 456789999999999998543 6788899999999999653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=175.54 Aligned_cols=339 Identities=17% Similarity=0.241 Sum_probs=208.2
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+.+.++++|.+.|+++.=+|-=..++-|-.+|+|.++|+..++.+.++... ...|..++|..+ +...+++|+..|.
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtD-G~p~las~~~~G~ 268 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTD-GNPLLASGRSNGD 268 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccC-CCeeEEeccCCce
Confidence 3688999999999999999998889999999999999999999888887532 356888998863 2347788888999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeec-cccccccccCCCCc--ccccccCce---eecCCCCCCC--CCCC-C
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKD--CYEREVGET---VDTDSLCDSK--DDVP-A 158 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~--~~~~-~ 158 (374)
+-+||++..+.... ..+.+..+. ....++. .|.. . ..+.+.. .+.++.++- .......++. .... -
T Consensus 269 m~~wDLe~kkl~~v-~~nah~~sv--~~~~fl~~epVl-~-ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 269 MAFWDLEKKKLINV-TRNAHYGSV--TGATFLPGEPVL-V-TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred EEEEEcCCCeeeee-eeccccCCc--ccceecCCCceE-e-eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 99999986533210 000110000 0000000 0000 0 0000000 000000000 0000000000 0000 0
Q ss_pred CCCceEEEcccCCC-----------------------------------------------------------------e
Q 017296 159 EGPKYMAVAGEQLS-----------------------------------------------------------------E 173 (374)
Q Consensus 159 ~~~~~~~~~~~~d~-----------------------------------------------------------------~ 173 (374)
..+.+.+.++..|+ .
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 01112222333333 4
Q ss_pred EEEEecCCCceeE-EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee---e
Q 017296 174 VEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM---K 249 (374)
Q Consensus 174 i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~---~ 249 (374)
++.|+.+....-. .+... .+.. ....+.++. . +.+....+.|+..|.|.+|++.+ +.-...+ .
T Consensus 424 ~~tW~~~n~~~G~~~L~~~------~~~~-~~~~~~av~-v----s~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ 490 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPK------RFKK-DDINATAVC-V----SFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSP 490 (910)
T ss_pred EEEEeccCcccccEEecCc------cccc-cCcceEEEE-E----eccCceEEEeccCCeEEEEEccc-CeeecccccCc
Confidence 4444444332211 11100 0000 111122211 1 12223467799999999999976 3334444 4
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-------------------------------------EE
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-------------------------------------KK 292 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-------------------------------------~~ 292 (374)
.|..+|+.++.|...+.+++++.||.+++||+....-...+ ..
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 79999999999998888999999999999999754310000 01
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-CcEEEec
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-STVALWE 368 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W~ 368 (374)
++..|...++.++|||||++|++++.|++||+||+.++.++..+. -..++.++.|+|+|.+|||+..| .-|++|.
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 223577789999999999999999999999999999999887764 56688999999999999999988 7899994
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-20 Score=164.17 Aligned_cols=273 Identities=14% Similarity=0.106 Sum_probs=170.8
Q ss_pred CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccCeEEEEecCCCCCCCCCceeeee
Q 017296 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (374)
Q Consensus 30 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~vrvwd~~~~~~~~~~~~~~~~ 108 (374)
+.+++|++.|+.+++||+.+++.+..+..+. .+..+++++ +++.+ ++++.|++|++||+.+++... .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG----TLPS 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE----eccC
Confidence 3578899999999999998888777665442 244566766 45555 677889999999998764211 0000
Q ss_pred cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEe
Q 017296 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (374)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~ 188 (374)
... .. .+ .+ .++.+.+++++..++.+++||+++++.+..+
T Consensus 72 -------------~~~-------~~---------~~----------~~-~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 72 -------------GPD-------PE---------LF----------AL-HPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred -------------CCC-------cc---------EE----------EE-CCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 000 00 00 01 1223455666667889999999987766555
Q ss_pred ccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC-cEEEEeccCCCCceeeeecCccCeEEEEEecCCCce
Q 017296 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG 267 (374)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg-~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 267 (374)
.... ....+ .+.++ + ..+++++.++ .+..||.+.. ....... .......+.|++++..+
T Consensus 112 ~~~~-----------~~~~~---~~~~d---g-~~l~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 112 PVGV-----------EPEGM---AVSPD---G-KIVVNTSETTNMAHFIDTKTY-EIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred eCCC-----------CcceE---EECCC---C-CEEEEEecCCCeEEEEeCCCC-eEEEEEE-cCCCccEEEECCCCCEE
Confidence 3210 00111 12222 2 2466666554 5677898653 2222222 23345778899988877
Q ss_pred EE-EecCCeEEEEEcCCCCCeEEEEEeee-cC--CCCeEEEEECCCCCEEEE-EeCCCeEEEEEccCCeEEEEecccCCc
Q 017296 268 IS-GGADQKIVLYNLDHSTGSCVIKKEIN-LE--RPGISGTSIRPDSKIAAT-AGWDRRVRIYNYRKGSALAILKYHHAT 342 (374)
Q Consensus 268 ~s-~s~D~~i~lwd~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~h~~~ 342 (374)
+. +..++.|++||++.......+..... .+ ......++|+|++++++. .+.++++.+||+++++....+. +...
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 54 45699999999975421111111100 00 112346889999998544 4557789999999888776553 4557
Q ss_pred eEEEEEeCCCCEEEEE-eCCCcEEEecCCCC
Q 017296 343 CNAVSFSSDCKLMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 343 v~~v~~sp~~~~las~-s~D~~v~~W~~~~~ 372 (374)
+.+++|+|+|++|+++ +.++.|++||+...
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 8999999999998876 56999999998654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=170.57 Aligned_cols=244 Identities=18% Similarity=0.277 Sum_probs=167.7
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
++|.+.|.+++.++||++|+||+.|..|.||+..+.+.+..+.+|... |.+++|-- +.+.+++++.|++|++|+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc--eeeeeeec--CccceeeeecCCceEEEehh
Confidence 599999999999999999999999999999999999999888888754 77777754 44689999999999999997
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
.-.+ +.+...|...+ .. ...-...-.+.+|..|+++
T Consensus 275 ~~s~-------vetlyGHqd~v---------------------------~~----------IdaL~reR~vtVGgrDrT~ 310 (479)
T KOG0299|consen 275 QLSY-------VETLYGHQDGV---------------------------LG----------IDALSRERCVTVGGRDRTV 310 (479)
T ss_pred HhHH-------HHHHhCCccce---------------------------ee----------echhcccceEEecccccee
Confidence 5321 11111111100 00 0000112245677789999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee-cC--
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VH-- 251 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~-~h-- 251 (374)
++|++.....+...... +..-|+ .|+.+ .++++||.||.|.+|++.+ ..|+.+.+ .|
T Consensus 311 rlwKi~eesqlifrg~~-----------~sidcv---~~In~-----~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv 370 (479)
T KOG0299|consen 311 RLWKIPEESQLIFRGGE-----------GSIDCV---AFIND-----EHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGV 370 (479)
T ss_pred EEEeccccceeeeeCCC-----------CCeeeE---EEecc-----cceeeccCCceEEEeeecc-cCceeEeeccccc
Confidence 99999766544433211 111122 23322 2699999999999999965 33444322 12
Q ss_pred ---------ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE-EEEEeCCCe
Q 017296 252 ---------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI-AATAGWDRR 321 (374)
Q Consensus 252 ---------~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~ 321 (374)
...|++++.-+....+++||.+|.+|||-++..-.+..+..++.. ...|++++|+++|+. ++..+....
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEEecccccc
Confidence 127889998887778999999999999998765434333444432 356999999999994 555566666
Q ss_pred EEEEEc
Q 017296 322 VRIYNY 327 (374)
Q Consensus 322 v~iwd~ 327 (374)
+-.|-.
T Consensus 450 lGRW~~ 455 (479)
T KOG0299|consen 450 LGRWWC 455 (479)
T ss_pred cceeeE
Confidence 666643
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=177.45 Aligned_cols=189 Identities=16% Similarity=0.256 Sum_probs=148.5
Q ss_pred EEEcccCCCeEEEEecCCC--ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 164 MAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
.+++++.|-+|++|+...+ -+..++.. +....-|++.. ......+++|+-|+.|.+||+...
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~----------H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRT----------HKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhc----------ccchheeeeec------ccCceeEEecCCCccEEEEEccCc
Confidence 3567778899999998765 23333332 22333344331 112236889999999999999743
Q ss_pred C---------Cceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 242 G---------IPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 242 ~---------~~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
. .+...+. ++.++|.+++-.+.+..+++|+..+-+++||.+..... -.+.+|...|+.+..++||.
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----mkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----MKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----eeeeccccceEEEEEcCCCC
Confidence 1 1222233 78899999999999888999999999999998643322 23457889999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 312 IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.++||+.||+|++||+...+++.++..|.+.|+++..+|+=..+.+|+.|+.|..=++..|
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999999999999999999999999999999999999998887654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=177.97 Aligned_cols=247 Identities=18% Similarity=0.257 Sum_probs=180.8
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc-ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
..|+.+-+.|+|.++|++|.+++.|+.|++|+.... +...++..+. ..+.+++.. .++|++++.|++|.++.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~----s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACY----SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeec----ccceEEeeccceEEEeeC
Confidence 369999999999999999999999999999997655 3333332222 235555543 368999999999999998
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
.++.... .+
T Consensus 84 ps~~~~~--iL--------------------------------------------------------------------- 92 (933)
T KOG1274|consen 84 PSGEEDT--IL--------------------------------------------------------------------- 92 (933)
T ss_pred CCCCccc--ee---------------------------------------------------------------------
Confidence 8763110 00
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~ 253 (374)
.. |..+.+.. .+.. +...++.|++|-.|++-++.... ....+.+|..
T Consensus 93 ------------~R-----------ftlp~r~~-----~v~g----~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a 139 (933)
T KOG1274|consen 93 ------------AR-----------FTLPIRDL-----AVSG----SGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA 139 (933)
T ss_pred ------------ee-----------eeccceEE-----EEec----CCcEEEeecCceeEEEEeccccc-hheeecccCC
Confidence 00 00000000 0110 11257788889999998886543 3567889999
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe---eecC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INLE-RPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~~-~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
+|.++.++|++..+|+.+.||.+++||++.......+... .... ..-+..++|+|++..++..+.|++|++|+...
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999999999999999999999999765433332221 1111 22356789999988999999999999999998
Q ss_pred CeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 330 GSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 330 ~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+.+..++. |...+..+.|+|+|+|||+++.||.|.|||++.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 888777753 444589999999999999999999999999973
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=159.57 Aligned_cols=246 Identities=17% Similarity=0.326 Sum_probs=161.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.|+..+..|.++|++|+. ++.+++|||.|-+|+|||+.....+..+-.|. ..+.++.|.+....++|+||+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCCCcE
Confidence 468889999999999998 68899999999999999998777777776664 45888888875544589999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.+|+...=. .++....|... +.. ....|.+ + ++.+-
T Consensus 110 ~iw~~~~W~-------~~~slK~H~~~---------------------------Vt~--------lsiHPS~-K-LALsV 145 (362)
T KOG0294|consen 110 IIWRVGSWE-------LLKSLKAHKGQ---------------------------VTD--------LSIHPSG-K-LALSV 145 (362)
T ss_pred EEEEcCCeE-------Eeeeecccccc---------------------------cce--------eEecCCC-c-eEEEE
Confidence 999986411 11111111000 000 0111222 3 45555
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.++.||+-+|+.-..+.-... .++
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L~~~-------------------------------------at~--------------- 173 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNLKNK-------------------------------------ATL--------------- 173 (362)
T ss_pred cCCceeeeehhhcCccceeeccCCc-------------------------------------cee---------------
Confidence 6689999999988764222210000 000
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.|++.+.+++.++.+ .|-+|.++... ++ .++... ..+.++.|- ++.++++|+.|+.|++||..
T Consensus 174 ---------v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---v~-~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 174 ---------VSWSPQGDHFVVSGRN-KIDIYQLDNAS---VF-REIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ---------eEEcCCCCEEEEEecc-EEEEEecccHh---Hh-hhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence 3333333333333322 24445443210 00 011111 123344444 45578889999999999999
Q ss_pred CCeEEEEecccCCceEEEEE--eCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILKYHHATCNAVSF--SSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~--sp~~~~las~s~D~~v~~W~~~ 370 (374)
+..++..+.+|+++|-.+.+ .|++.+|+|+|.||.|++|+++
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 89999999999999999984 4788899999999999999985
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=168.88 Aligned_cols=242 Identities=21% Similarity=0.340 Sum_probs=165.4
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
--++.|++++|-.||++|+.|++.|.|+|+|..+.--+..+..|.. .+..+-|++. +...+++|+.|+.+++||+.+
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a--pv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA--PVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC--ceeEEEeccc-CCeEEEecCCCceEEEEEcCC
Confidence 3467899999999999999999999999999544223455666654 3556667764 457888999999999999987
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 175 (374)
+.. .-....|-. .+... ++ .+...-++++|++|++||
T Consensus 143 a~v-------~~~l~~htD----------------------------YVR~g-------~~-~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 143 AYV-------QAELSGHTD----------------------------YVRCG-------DI-SPANDHIVVTGSYDGKVR 179 (487)
T ss_pred cEE-------EEEecCCcc----------------------------eeEee-------cc-ccCCCeEEEecCCCceEE
Confidence 521 000011100 00000 01 111234788999999999
Q ss_pred EEecCCC-ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 176 IWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 176 vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
+||+++. .....+... .....++ +.+. + ..++++ ..+.|++||+..+++.+..+..|...
T Consensus 180 l~DtR~~~~~v~elnhg---------~pVe~vl-----~lps---g-s~iasA-gGn~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHG---------CPVESVL-----ALPS---G-SLIASA-GGNSVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred EEEeccCCceeEEecCC---------CceeeEE-----EcCC---C-CEEEEc-CCCeEEEEEecCCceehhhhhcccce
Confidence 9999987 444444321 1111111 2221 2 235554 45689999998666555555559999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
|+|+.+..++..|+++|.|+.+++||+... + ....++.. .+|.+++++|+++.++.|..||.+.+-+.
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--K--vv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNY--K--VVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccce--E--EEEeeecc-cceeeEEecCCCceEEEecccceeeeehh
Confidence 999999888889999999999999996432 2 22333333 46999999999999999999999987643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=173.04 Aligned_cols=300 Identities=15% Similarity=0.252 Sum_probs=196.8
Q ss_pred eEEeecCCCceeEEEEeCC-----------CCEEEEecCCCcEEEEeCccc---ceeee-------------------e-
Q 017296 11 VAVLRGHRASVTDVCFHQT-----------KPILFAGTTGGELRIWDTVQH---RTVSS-------------------S- 56 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~-----------~~~l~s~s~D~~v~vWd~~~~---~~~~~-------------------~- 56 (374)
...+--|...|+.|.--|- ..-++|+|.|++||+||+..+ +..+. +
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 3455668888888776551 224889999999999998642 11000 0
Q ss_pred ----ee--------eeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccc
Q 017296 57 ----WV--------HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124 (374)
Q Consensus 57 ----~~--------~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (374)
.+ .....++.+++.++ ++++|++|-.-|++|++++++-+... .+..+...+-
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~----~~eAHesEil---------- 505 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTC----FMEAHESEIL---------- 505 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhh----heecccceeE----------
Confidence 00 01113578888877 78999999999999999997643211 1111111110
Q ss_pred cccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCC
Q 017296 125 NAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKG 203 (374)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~ 203 (374)
|.+.... .-. .-++++++.|+.|+|+|+..... +.++..+ +..
T Consensus 506 ----------cLeyS~p----------------~~~-~kLLASasrdRlIHV~Dv~rny~l~qtld~H--------Sss- 549 (1080)
T KOG1408|consen 506 ----------CLEYSFP----------------VLT-NKLLASASRDRLIHVYDVKRNYDLVQTLDGH--------SSS- 549 (1080)
T ss_pred ----------EEeecCc----------------hhh-hHhhhhccCCceEEEEecccccchhhhhccc--------ccc-
Confidence 1111000 001 12567888999999999987643 3344322 111
Q ss_pred CcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC----ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEE
Q 017296 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (374)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lw 279 (374)
+....|... .+...+++.+.|..|.+=-..+.+. +..+...-...+..|.++|....+++++.|..|++|
T Consensus 550 ----ITsvKFa~~--gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 550 ----ITSVKFACN--GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred ----eeEEEEeec--CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 111223221 1112477777887765422221110 111111223568889999999999999999999999
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
|++.......++.. ..|....-.+...|.|-|||+.+.|+++.++|..+++++.++.+|.+.|+.+.|.+|.+.|+|.+
T Consensus 624 ~i~sgKq~k~FKgs-~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 624 DIESGKQVKSFKGS-RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred eccccceeeeeccc-ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence 99754322222221 22334566788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecC
Q 017296 360 EDSTVALWEL 369 (374)
Q Consensus 360 ~D~~v~~W~~ 369 (374)
.||.|.+|.+
T Consensus 703 gDgCIFvW~l 712 (1080)
T KOG1408|consen 703 GDGCIFVWKL 712 (1080)
T ss_pred CCceEEEEEC
Confidence 9999999987
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=172.74 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=176.1
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc---eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
.|-.-|-++..++..+.++||+. |-|+|||+.... ++..+..-.....+.+|-+.+ +++.|++||.-.++-|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence 58888999999999999999996 789999985321 122221122233466666655 678888888888888888
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
+..... .++.. .+......++.+.
T Consensus 494 LAapTp------rikae----------------------------------------------ltssapaCyALa~---- 517 (705)
T KOG0639|consen 494 LAAPTP------RIKAE----------------------------------------------LTSSAPACYALAI---- 517 (705)
T ss_pred ccCCCc------chhhh----------------------------------------------cCCcchhhhhhhc----
Confidence 875421 11000 0000000001111
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
+.+....++++.||.|.|||+++ ...+..+++|+
T Consensus 518 ---------------------------------------------spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGht 551 (705)
T KOG0639|consen 518 ---------------------------------------------SPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHT 551 (705)
T ss_pred ---------------------------------------------CCccceeeeeccCCcEEEEEccc-ceeeecccCCC
Confidence 11122356778899999999987 45678899999
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~ 332 (374)
+.+.|+.+++++.-+.||+.|+++|.||++.. ....... ..+.|.++..+|++.+++.|.+++.|.|-.....+.
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhh--hhhhhhh---hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 99999999999999999999999999999642 2222111 124588999999999999999999999987765555
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 333 LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 333 ~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+ .+-.|+..|.++.|++-|++++|.+.|..+..|..
T Consensus 627 y-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 627 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred e-eecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 4 45569999999999999999999999999999964
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=156.36 Aligned_cols=255 Identities=18% Similarity=0.226 Sum_probs=182.5
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc---ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+..+|++-|-.+...=.|++|+|+|.|++|||+..... +.+.++.+|.. .+-.+++....-++.|+|++.||.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G--PVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG--PVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC--CeeEEeecccccCcEeeEeecCceE
Confidence 445689999998888888999999999999999997543 35677888874 4777777665556899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.+|.-.+|+- .+. .....| .+
T Consensus 83 IiWke~~g~w-~k~----~e~~~h------------------------------------------------------~~ 103 (299)
T KOG1332|consen 83 IIWKEENGRW-TKA----YEHAAH------------------------------------------------------SA 103 (299)
T ss_pred EEEecCCCch-hhh----hhhhhh------------------------------------------------------cc
Confidence 9999877631 000 000000 00
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--cee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLT 246 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~ 246 (374)
+ + . +..+.+.. -...|+.|+.||.|.+.+.+..+. .-.
T Consensus 104 S----V-----------N---------sV~waphe----------------ygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 104 S----V-----------N---------SVAWAPHE----------------YGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred c----c-----------e---------eecccccc----------------cceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 0 0 0 00011111 112477899999999998876421 223
Q ss_pred eeecCccCeEEEEEecC---C-----------CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC--
Q 017296 247 AMKVHLEPVLCLSIDES---C-----------NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-- 310 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~---~-----------~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-- 310 (374)
..+.|.-.|+++++.|. + ..|++|+.|+.|++|+.+.. ...+...+..|.+.|+.+++.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCC
Confidence 35679999999998654 2 23799999999999998754 444445577888999999999953
Q ss_pred --CEEEEEeCCCeEEEEEccC-CeE--EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 311 --KIAATAGWDRRVRIYNYRK-GSA--LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 311 --~~l~s~~~dg~v~iwd~~~-~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+|||++.||+|-||.... .+. ...+...+..++++.||+.|..|+.++.|+.|++|.-
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 4799999999999997642 122 1233345578999999999999999999999999963
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=178.41 Aligned_cols=302 Identities=22% Similarity=0.328 Sum_probs=199.3
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee-ceeeeEEeccCCccccceeeeccccCeEEEEecCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~ 98 (374)
+-..+.|+|-...+++++.--.|+|||.+.++.+..+..+. ...+|..+.+-...|...+++++.||.||+|+--...-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34567889989999999988899999999998877654332 22346666665555667899999999999999532210
Q ss_pred CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEe
Q 017296 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd 178 (374)
..+.++ +. +..++-+. .. ..+.+-++.. ....++++++|. -..|+|||
T Consensus 1146 -~~~eLV--Ta---w~~Ls~~~--------~~------~r~~~~v~dW-----------qQ~~G~Ll~tGd-~r~IRIWD 1193 (1387)
T KOG1517|consen 1146 -KKPELV--TA---WSSLSDQL--------PG------ARGTGLVVDW-----------QQQSGHLLVTGD-VRSIRIWD 1193 (1387)
T ss_pred -CCceeE--Ee---eccccccC--------cc------CCCCCeeeeh-----------hhhCCeEEecCC-eeEEEEEe
Confidence 011111 10 00000000 00 0000101110 112245566664 57999999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--ceeeeecCccC--
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP-- 254 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~~~~~h~~~-- 254 (374)
+...+.+..++-.. ..+. .....+... ...+++|..||.|++||.|.+.. .+...+.|+..
T Consensus 1194 a~~E~~~~diP~~s------------~t~v--TaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGS------------STLV--TALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred cccceeEeecccCC------------Cccc--eeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 99988777665321 0010 112222222 23688999999999999987543 44556678876
Q ss_pred eEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-C--CeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 255 VLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLER-P--GISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 255 v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~--~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
|..+.+.+.+.. +++||.||.|++||++... +.. ...+..|. . .++++.+|++..++|+|+. +.|+||++ .|
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KET-FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SG 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCc-ccc-cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-Ch
Confidence 999999876655 8999999999999998631 111 11222221 2 3889999999999999998 99999998 46
Q ss_pred eEEEEecccC-------CceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 331 SALAILKYHH-------ATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 331 ~~~~~~~~h~-------~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.+..++.++ ..+.+++|+|-..+||.|+.|.+|.|+....+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6665554433 46799999999899999999999999987665
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=152.42 Aligned_cols=257 Identities=18% Similarity=0.236 Sum_probs=164.9
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec-----c
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-----G 83 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-----~ 83 (374)
+.+.++.||++.|.|+..+.+.+.|+|||.|.++++||..+|+++...... ..+..+.|+. ++++++.. +
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQMG 117 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhhcC
Confidence 567899999999999999999999999999999999999999998876543 3466677776 45655433 3
Q ss_pred ccCeEEEEecCCCCC---CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 84 RDGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
.-+.|-++|++.... ...|.+.+.+. ... . + .....+.
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-------------~sk-------i----------t---------~a~Wg~l 158 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTP-------------DSK-------I----------T---------SALWGPL 158 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCC-------------ccc-------e----------e---------eeeeccc
Confidence 346888888874321 00111111000 000 0 0 0000111
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.-.+++|..|+.|..||+++++.+..-... ++.....++ +. .....+++||.|.+-++||.++
T Consensus 159 -~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-------h~~~Ind~q-----~s----~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 159 -GETIIAGHEDGSISIYDARTGKELVDSDEE-------HSSKINDLQ-----FS----RDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred -CCEEEEecCCCcEEEEEcccCceeeechhh-------hcccccccc-----cc----CCcceEEecccCccceeeeccc
Confidence 124678889999999999998754433221 111111221 22 2334799999999999999975
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE----------EEeeecCCCCeEEEEECCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI----------KKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~----------~~~~~~~~~~v~~~~~sp~~ 310 (374)
- ..+.++. -..||++.++.|....++-|+.....-+=......++... ....+.|-..|++++|||+|
T Consensus 222 l-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 222 L-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred e-eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 2 2233332 3569999999987766666555433332222222222111 12345677889999999999
Q ss_pred CEEEEEeCCCeEEEEEcc
Q 017296 311 KIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~ 328 (374)
+..+||++||.||+.-..
T Consensus 300 ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccCCCCceEEEEEec
Confidence 999999999999987543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-20 Score=171.30 Aligned_cols=145 Identities=20% Similarity=0.374 Sum_probs=121.7
Q ss_pred EEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 223 NVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
.|++|+.|++|++||+.... .++..+.+|...|.++.|+|.. ..+++++.|++|++||++... . ...+.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~--~~~l~ 165 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--A--VEVIK 165 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--E--EEEEc
Confidence 68999999999999996532 2466788999999999999875 578999999999999997542 2 23445
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc-eEEEEEeCCCCEEEEEe----CCCcEEEecCC
Q 017296 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSSDCKLMASAS----EDSTVALWELY 370 (374)
Q Consensus 296 ~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~las~s----~D~~v~~W~~~ 370 (374)
.|...|.+++|+|++++|++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+.
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 67778999999999999999999999999999999999889889864 45678999888777654 58999999985
Q ss_pred C
Q 017296 371 P 371 (374)
Q Consensus 371 ~ 371 (374)
.
T Consensus 246 ~ 246 (493)
T PTZ00421 246 K 246 (493)
T ss_pred C
Confidence 4
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=174.51 Aligned_cols=287 Identities=19% Similarity=0.281 Sum_probs=190.9
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce----eeeeeee-eceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT----VSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
+..+++|..+++...++.++. ...+|+....-.. ...+... .....+.-+.++ ....+.+++++..|.|-+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEe
Confidence 355666778888888888885 5677776543221 1110000 000112223454 44668899999999999999
Q ss_pred cCCCCCCCCCc---eeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 93 IENGGLSSNPS---LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 93 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+... .+++. +..+....+ +. ++.... ..++++|+
T Consensus 117 lnk~--~rnk~l~~f~EH~Rs~~----------------------~l------------------dfh~te-p~iliSGS 153 (839)
T KOG0269|consen 117 LNKS--IRNKLLTVFNEHERSAN----------------------KL------------------DFHSTE-PNILISGS 153 (839)
T ss_pred cCcc--ccchhhhHhhhhcccee----------------------ee------------------eeccCC-ccEEEecC
Confidence 9652 11111 011000000 00 111111 24788999
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
+|++|+.||++..+...++..+.. ..+-+ .|.+.. ...++++++.|.+++||+|.+..+...+.
T Consensus 154 QDg~vK~~DlR~~~S~~t~~~nSE--------SiRDV-----~fsp~~---~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTFRSNSE--------SIRDV-----KFSPGY---GNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred CCceEEEEeeecccccccccccch--------hhhce-----eeccCC---CceEEEecCCceEEEeeccCchhHHHHhh
Confidence 999999999999887666654321 11111 232221 22589999999999999999988888899
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE-EEEEe--CCCeEEEEE
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI-AATAG--WDRRVRIYN 326 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~--~dg~v~iwd 326 (374)
.|.++|.|+.++|+...+||||.|+.|++||+.+....... .++ ....+..+.|.|..++ ||+.+ .|-.|+|||
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--TIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee--EEe-ecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999999999999999999999999999753222111 111 2246889999998776 44333 478899999
Q ss_pred ccCC-eEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEec
Q 017296 327 YRKG-SALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWE 368 (374)
Q Consensus 327 ~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~ 368 (374)
++.+ -+..++..|...+..++|-. |-..|.++|.|++|..-.
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 9765 35678889999999999964 445889999999986543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=157.00 Aligned_cols=321 Identities=18% Similarity=0.282 Sum_probs=201.9
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCC--------cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~--------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
..+.+.||...|.|++.+|+.-++++|...+ .+++||..+-..+..+-. ...++.+++|+....++.+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~--f~~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF--FDRGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecc--ccccceeeeecccCCCceEEE
Confidence 4456789999999999999998999887666 499999887776666542 224588899988766665443
Q ss_pred --ccccCeEEEEecCCCCCCCCCceeeeeccee--eeeeeeeccccccccccCCC-CcccccccCceeecCCCCCCCCCC
Q 017296 82 --QGRDGTVKCWDIENGGLSSNPSLTIKTNSYH--FCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSKDDV 156 (374)
Q Consensus 82 --~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (374)
-+.+..+-+||.+.+..... +++.+-. .+.+.+. .+. .....+.. ..-+..+.+..+... ..+
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~----vk~sne~v~~a~FHPt-d~n-liit~Gk~H~~Fw~~~~~~l~k~~------~~f 241 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGP----VKTSNEVVFLATFHPT-DPN-LIITCGKGHLYFWTLRGGSLVKRQ------GIF 241 (626)
T ss_pred ecCCCccccchhhchhhhccCc----ceeccceEEEEEeccC-CCc-EEEEeCCceEEEEEccCCceEEEe------ecc
Confidence 57788999999987643211 1111000 0000000 000 00000000 000001111000000 000
Q ss_pred CCCCCce----------EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE
Q 017296 157 PAEGPKY----------MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (374)
Q Consensus 157 ~~~~~~~----------~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (374)
...++++ -+++|..++.|.||+..+.+...... .+++...+.+.. ..| .+++
T Consensus 242 ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~----------aH~ggv~~L~~l------r~G--tllS 303 (626)
T KOG2106|consen 242 EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH----------AHDGGVFSLCML------RDG--TLLS 303 (626)
T ss_pred ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee----------ecCCceEEEEEe------cCc--cEee
Confidence 0011111 14678888999999997765443332 122333333221 122 4788
Q ss_pred EecCCcEEEEeccC--------C---CC----------------------------ceeeeecCccCeEEEEEecCCCce
Q 017296 227 GYEDGSILVWDIRN--------P---GI----------------------------PLTAMKVHLEPVLCLSIDESCNGG 267 (374)
Q Consensus 227 gs~dg~i~iwdl~~--------~---~~----------------------------~~~~~~~h~~~v~~~~~~~~~~~~ 267 (374)
|..|..|.+||-.- | +. .....++|.+....++.+|+..++
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~ 383 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQL 383 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhe
Confidence 99999999998310 0 00 001236788889999999998999
Q ss_pred EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEE
Q 017296 268 ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVS 347 (374)
Q Consensus 268 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 347 (374)
++++.|+.++||+ + . +...... ..+.+.++.|+|.| .+|.|...|...+.|.++...+ ++....++++.++
T Consensus 384 ~T~gqdk~v~lW~-~-~--k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN-D-H--KLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-TIHTDNEQLSVVR 454 (626)
T ss_pred eeccCcceEEEcc-C-C--ceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeE-EEEecCCceEEEE
Confidence 9999999999998 2 1 2222221 23568899999999 8999999999999999884444 4433478999999
Q ss_pred EeCCCCEEEEEeCCCcEEEecCCC
Q 017296 348 FSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
|+|+|.+||.||.|+.|+|+.++.
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECC
Confidence 999999999999999999998754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-20 Score=175.02 Aligned_cols=268 Identities=20% Similarity=0.256 Sum_probs=184.3
Q ss_pred eecC-CCceeEEEEeCCCCEEEEec--CCCcEEEEeCcc------------cceeeeeeeeeceeeeEEeccCCccccce
Q 017296 14 LRGH-RASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (374)
Q Consensus 14 l~gH-~~~V~~l~~~~~~~~l~s~s--~D~~v~vWd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
+.+| ...|.+|..+|+|..++||+ .|+.+++|+... .+.+-....|. ..+.|+-|++ ++.+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--~sv~CVR~S~--dG~~ 83 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--GSVNCVRFSP--DGSY 83 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc--CceeEEEECC--CCCe
Confidence 3445 46689999999999999999 999999998532 11112222343 3477788887 7899
Q ss_pred eeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 79 l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
||+||.|+-|-+|...... .. . . ++ .
T Consensus 84 lAsGSDD~~v~iW~~~~~~-~~-~----------~---------------fg--------s------------------- 109 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIG-SG-T----------V---------------FG--------S------------------- 109 (942)
T ss_pred EeeccCcceEEEeeecccC-Cc-c----------c---------------cc--------c-------------------
Confidence 9999999999999986410 00 0 0 00 0
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
.|+ -..+.=| ++...+..+ ......++ ..| ....+++++.|++|.+||.
T Consensus 110 --------~g~-~~~vE~w-----k~~~~l~~H--------~~DV~Dv~-----Wsp----~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 110 --------TGG-AKNVESW-----KVVSILRGH--------DSDVLDVN-----WSP----DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred --------ccc-cccccee-----eEEEEEecC--------CCccceec-----cCC----CccEEEEecccceEEEEcc
Confidence 000 0011111 111111111 00000000 111 2236899999999999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC--------------------------CeEE---
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST--------------------------GSCV--- 289 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~--------------------------~~~~--- 289 (374)
++. ..+..+.+|...|..+.|||-+.++++-+.|++|++|++..-+ |.+.
T Consensus 159 ~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 159 KTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 886 6688899999999999999999999999999999999953210 1000
Q ss_pred -------------------EEEeeecCCCCeEEEEECC-----CCC------------EEEEEeCCCeEEEEEccCCeEE
Q 017296 290 -------------------IKKEINLERPGISGTSIRP-----DSK------------IAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 290 -------------------~~~~~~~~~~~v~~~~~sp-----~~~------------~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
....+-.|..++..+.|+| +.+ .+|+|+.|+++.||.....+++
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 0112335777899999986 222 6789999999999999888888
Q ss_pred EEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 334 AILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 334 ~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
..... -...|..+.|+|||..|+.+|.||+|.+..+++
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 65432 236899999999999999999999999998865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-21 Score=163.04 Aligned_cols=249 Identities=16% Similarity=0.273 Sum_probs=171.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+..+++.|.+.|+.|++.. ..++|++.|.+|+.|..+ +.++.++.+... +.. .+.....+.++|+|+ .|
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s~---~~g--Idh~~~~~~FaTcGe--~i 169 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKSV---YLG--IDHHRKNSVFATCGE--QI 169 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeecccc---ccc--cccccccccccccCc--ee
Confidence 46789999999999999977 679999999999999975 345555433221 222 222224567888886 58
Q ss_pred EEEecCCCCCCCCCceeeee--cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 89 KCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-|||.+... |...+.. ..++ +..+++. . -.+++
T Consensus 170 ~IWD~~R~~----Pv~smswG~Dti~----------------------svkfNpv------------------E-TsILa 204 (433)
T KOG0268|consen 170 DIWDEQRDN----PVSSMSWGADSIS----------------------SVKFNPV------------------E-TSILA 204 (433)
T ss_pred eecccccCC----ccceeecCCCcee----------------------EEecCCC------------------c-chhee
Confidence 899986432 1111110 0000 0011111 1 12456
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
++..|+.|.++|++++..+.++....-. ...| +.| ..-.+++|++|..+..||++.-..++.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRT---------N~Is-----wnP----eafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRT---------NTIC-----WNP----EAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccc---------ccee-----cCc----cccceeeccccccceehhhhhhcccch
Confidence 6667899999999999877666432111 1111 222 112488899999999999998778888
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
..++|...|..+.|+|.|+-+++||.|.+|++|..+.+...-... ......|.++.||-|.+||+||+.|+.||+|-
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---HhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 899999999999999999999999999999999987543211100 01123589999999999999999999999997
Q ss_pred ccCCeEE
Q 017296 327 YRKGSAL 333 (374)
Q Consensus 327 ~~~~~~~ 333 (374)
..-.+.+
T Consensus 344 a~Asekl 350 (433)
T KOG0268|consen 344 AKASEKL 350 (433)
T ss_pred cchhhhc
Confidence 7544433
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=171.11 Aligned_cols=178 Identities=20% Similarity=0.300 Sum_probs=143.6
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
..++.|+.|.+|.+|.+.+...+..+.++. ..+|... . ...+ .+++||.|.++++|-+.
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~-----------snVC~ls----~-~~~~--~~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHK-----------SNVCSLS----I-GEDG--TLISGSWDSTAKVWRIG--- 130 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccc-----------cceeeee----c-CCcC--ceEecccccceEEecch---
Confidence 346678889999999998888777776542 1222111 0 1122 38999999999999864
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.....+++|+.+|..+..-|+. .++|||.|.+||+|.-+. ....+.+|.+-|+.+++=|++ .++|++.||.|
T Consensus 131 ~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~I 202 (745)
T KOG0301|consen 131 ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSI 202 (745)
T ss_pred hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc------hhhhhccchhheeeeEEecCC-CeEeecCCceE
Confidence 3455689999999999998876 689999999999996431 234567788999999999876 47889999999
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|++ +|+++..+.+|.+.|.++...+++..++|+++|+++|||+..
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99999 889999999999999999988899999999999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=165.04 Aligned_cols=259 Identities=20% Similarity=0.301 Sum_probs=158.9
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.|.++++.+ .+.+|+|||.|-+|++||.+.-.. . ++ ++..+ .+..+..+.
T Consensus 169 ~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMda-s-----~~----~fr~l--------------~P~E~h~i~---- 218 (641)
T KOG0772|consen 169 IVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDA-S-----MR----SFRQL--------------QPCETHQIN---- 218 (641)
T ss_pred EEEEeeecC--CCceeeeccccceEEEEecccccc-c-----ch----hhhcc--------------Ccccccccc----
Confidence 366777777 568999999999999999964210 0 00 00000 001110000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
+. ...+.+..+++++|+. ..+|+|-.-.+...+..+......+ ..+++..--+....+.|. ....
T Consensus 219 ----sl-----~ys~Tg~~iLvvsg~a--qakl~DRdG~~~~e~~KGDQYI~Dm-~nTKGHia~lt~g~whP~---~k~~ 283 (641)
T KOG0772|consen 219 ----SL-----QYSVTGDQILVVSGSA--QAKLLDRDGFEIVEFSKGDQYIRDM-YNTKGHIAELTCGCWHPD---NKEE 283 (641)
T ss_pred ----ee-----eecCCCCeEEEEecCc--ceeEEccCCceeeeeeccchhhhhh-hccCCceeeeeccccccC---cccc
Confidence 00 1122344567777764 6888986544444443332211110 011111111111122232 3336
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee-----cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++++.||++||||+.+....++.++ +-.-+++..+|++++..+|+|..||+|.+|+....+.... ....++|.
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-~~vk~AH~ 362 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-MKVKDAHL 362 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-eEeeeccC
Confidence 89999999999999976554444332 2345789999999999999999999999999854332222 22334565
Q ss_pred C--CeEEEEECCCCCEEEEEeCCCeEEEEEccCCe-EEEEecccC--CceEEEEEeCCCCEEEEEe------CCCcEEEe
Q 017296 299 P--GISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHH--ATCNAVSFSSDCKLMASAS------EDSTVALW 367 (374)
Q Consensus 299 ~--~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~--~~v~~v~~sp~~~~las~s------~D~~v~~W 367 (374)
. .|++++||+||++|+|-|.|+++++||++..+ ++.+..+-. -.-..+.|||+.++|+||. .-+++.++
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 5 89999999999999999999999999998754 444433322 2345679999999999874 33455555
Q ss_pred c
Q 017296 368 E 368 (374)
Q Consensus 368 ~ 368 (374)
+
T Consensus 443 d 443 (641)
T KOG0772|consen 443 D 443 (641)
T ss_pred e
Confidence 4
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=162.54 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=170.0
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
.++|.||+-+|.|.+|+.|...+.+++|.+.+|+.+..+..|= ..+.++.|+. |+.+++|||.||.|++|++-.-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~l- 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSD--DGSHIITGSKDGAVLVWLLTDL- 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeC--CCcEEEecCCCccEEEEEEEee-
Confidence 4779999999999999999899999999999999887765552 4588888876 6789999999999999998420
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
. ...+.. .. ..++.|
T Consensus 156 -v-------------------~a~~~~-----------------------------------~~----------~p~~~f 170 (476)
T KOG0646|consen 156 -V-------------------SADNDH-----------------------------------SV----------KPLHIF 170 (476)
T ss_pred -c-------------------ccccCC-----------------------------------Cc----------cceeee
Confidence 0 000000 00 012222
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
.--+ -.+..++- .......+++++|.|.++|+||+.. +..+.++ ....++.+
T Consensus 171 ~~Ht-lsITDl~i-------------------------g~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti-~fp~si~a 222 (476)
T KOG0646|consen 171 SDHT-LSITDLQI-------------------------GSGGTNARLYTASEDRTIKLWDLSL-GVLLLTI-TFPSSIKA 222 (476)
T ss_pred ccCc-ceeEEEEe-------------------------cCCCccceEEEecCCceEEEEEecc-ceeeEEE-ecCCccee
Confidence 1000 01111110 0000112689999999999999975 3333333 25678999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeE------------EEEEeeecCCC--CeEEEEECCCCCEEEEEeCCCeEE
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSC------------VIKKEINLERP--GISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~------------~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
+++||.+..++.|+.+|.|-+.++....+.. .....+..|.. .|++++++-||.+|+||+.||+|+
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999999999999999999998875433111 11223345555 899999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCK 353 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 353 (374)
|||+.+.++++++..-.++|+.+.+.|--+
T Consensus 303 vWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999888888876678999999876433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-20 Score=148.95 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=163.0
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.+.++++.. ++.+|++|+.|+++++|++...+..-. ..+..|... ..+
T Consensus 22 ~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~-----~~~~gh~~s----------------vdq--------- 69 (313)
T KOG1407|consen 22 KVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKE-----LVYRGHTDS----------------VDQ--------- 69 (313)
T ss_pred cceEEEEcc--cCceeeecccCCceEEEEecchhhhhh-----hcccCCCcc----------------hhh---------
Confidence 366677766 678999999999999999976532100 000001000 000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
+ ...+....++++++.|++|++||.+++++...+... +...-+ ...| ++ .+
T Consensus 70 -----l------~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----------~eni~i---~wsp---~g-~~ 120 (313)
T KOG1407|consen 70 -----L------CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-----------GENINI---TWSP---DG-EY 120 (313)
T ss_pred -----h------eeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-----------CcceEE---EEcC---CC-CE
Confidence 0 001111123445556789999999999987766432 111111 1222 22 36
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
++.+..|..|.+.|.++.. .+...+ ..-.+..+.++-+...+.....-|.|.+-....- .....+++|...+.+
T Consensus 121 ~~~~~kdD~it~id~r~~~-~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH~snCic 194 (313)
T KOG1407|consen 121 IAVGNKDDRITFIDARTYK-IVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAHPSNCIC 194 (313)
T ss_pred EEEecCcccEEEEEecccc-eeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecccc----ccccccccCCcceEE
Confidence 8889999999999998642 222222 2234555666555555666666788888655321 123456788888999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.|+|+|+|+|+|+.|-.|.+||+++.-+...+..+.=+|..+.||-||++|||||+|-.|-|=+..++
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 999999999999999999999999988888888889999999999999999999999999976555444
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=156.32 Aligned_cols=256 Identities=18% Similarity=0.292 Sum_probs=169.8
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCc------c------------------------------c-
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV------Q------------------------------H- 50 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~------~------------------------------~- 50 (374)
.+++.++.||.+.|++|.|++.+.+++|+|.|++.-||... . +
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 47899999999999999999999999999999999999720 0 0
Q ss_pred ---ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeecccccccc
Q 017296 51 ---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127 (374)
Q Consensus 51 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (374)
-++..+.+|.. -+.++.| ..+++++++++.|.+..+||+++|++.. ...+|-..+
T Consensus 260 tiRvPl~~ltgH~~--vV~a~dW--L~gg~Q~vTaSWDRTAnlwDVEtge~v~-------~LtGHd~EL----------- 317 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRA--VVSACDW--LAGGQQMVTASWDRTANLWDVETGEVVN-------ILTGHDSEL----------- 317 (481)
T ss_pred eeeeeeeeeecccc--ceEehhh--hcCcceeeeeeccccceeeeeccCceec-------cccCcchhc-----------
Confidence 01222333321 1233333 2366899999999999999999986421 001110000
Q ss_pred ccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCc-eeEEeccCccCCCCCcCCCCCcc
Q 017296 128 QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGM 206 (374)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 206 (374)
.+| .+.+.+ -++++++.|.+.++||.+..- .+..++++ . ..+
T Consensus 318 -----tHc--------------------stHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGH--------t---dtV 360 (481)
T KOG0300|consen 318 -----THC--------------------STHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGH--------T---DTV 360 (481)
T ss_pred -----ccc--------------------ccCCcc-eEEEEeccCceeEeccchhhcceeeeeccc--------c---cce
Confidence 000 011222 356677889999999998543 23333322 1 111
Q ss_pred eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC
Q 017296 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
... .|..+ ..+++|++|.+|++||+++-..++.++. -..+++.++++..++.++.--....|+|||+++..-
T Consensus 361 TS~--vF~~d-----d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 361 TSV--VFNTD-----DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred eEE--EEecC-----CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 111 23332 2599999999999999987666666654 456888999987766677777788999999976433
Q ss_pred eEEEEEeeecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEccCC
Q 017296 287 SCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 287 ~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~v~iwd~~~~ 330 (374)
..+.+.....|+.-|.+.+|..+.. -|.++|.|+.+.-|.+..+
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 2232334456777788999975432 3778899999999988654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=158.44 Aligned_cols=187 Identities=19% Similarity=0.373 Sum_probs=142.5
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN- 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~- 240 (374)
.+++++|...+.+.+|.+.+|..+..+..+ + +.. +...|.. +..++++|+.||.|.+|++-.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aH-------Y----Q~I--TcL~fs~----dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAH-------Y----QSI--TCLKFSD----DGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhh-------c----cce--eEEEEeC----CCcEEEecCCCccEEEEEEEee
Confidence 456777767789999999999977666432 1 111 1112332 223799999999999998731
Q ss_pred -------CCCceeeeecCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 241 -------PGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 241 -------~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
...|+..+..|+-+|+.+.+.. ....++|+|.|.+||+||+... ..+ ..+.. ...+.++++.|-++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LL--lti~f-p~si~av~lDpae~ 230 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--VLL--LTITF-PSSIKAVALDPAER 230 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--eee--EEEec-CCcceeEEEccccc
Confidence 1346777889999999999953 3456899999999999999543 222 22222 24588999999999
Q ss_pred EEEEEeCCCeEEEEEccCC----------------eEEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 312 IAATAGWDRRVRIYNYRKG----------------SALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~----------------~~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..|+.+|.|.+.++..- ..+..+.+|.+ .|+|++.+-||.+|+||+.||.|++||+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9999999999999877432 23556789998 99999999999999999999999999984
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-22 Score=180.79 Aligned_cols=185 Identities=21% Similarity=0.340 Sum_probs=148.9
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.++.|+.|..+-+|.+.....+..+..+. ...+.+ .|.+ ...++++|+.+|+|++|||+. ..
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--------spIeSl-----~f~~----~E~LlaagsasgtiK~wDlee-Ak 103 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKPNAITSLTGHE--------SPIESL-----TFDT----SERLLAAGSASGTIKVWDLEE-AK 103 (825)
T ss_pred eeccCCCceeeccccccCCchhheeeccC--------Ccceee-----ecCc----chhhhcccccCCceeeeehhh-hh
Confidence 35667778888899876655544443321 111111 1211 122578899999999999986 45
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+.++.+|..++..+.|+|-+-++++||.|..+++||.+...+.. ..+.|...+..+.|+|+|+++++|++|.+++
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~----~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH----TYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee----eecCCcceeEEEeecCCCceeeccCCcceee
Confidence 577899999999999999999888999999999999997544322 2344666788999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
|||+..|+.+..+..|+..+.++.|+|..-++++||.|.+|++|++.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999999999999999999999999999999999999986
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-22 Score=164.93 Aligned_cols=146 Identities=26% Similarity=0.418 Sum_probs=125.9
Q ss_pred eEEEEEecCCcEEEEeccCCCCceee--------eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTA--------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.++++||.||-|.+||..+. +.... +.-+.++|.|+.|+.+...+++|+.||.|++|.+++ +.|..+.
T Consensus 226 qyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t--G~ClRrF- 301 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET--GQCLRRF- 301 (508)
T ss_pred ceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec--chHHHHh-
Confidence 47999999999999998653 22222 334678999999988878899999999999999864 4444322
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 294 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-++|..+|+++.||.|+..++|++.|.+||+--+++|++++.+++|...|+.+.|.+||..++|+|.||+||+|+...
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 246778999999999999999999999999999999999999999999999999999999999999999999998754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=157.89 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=177.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.+.+|+||+..|+.+.|+++...++++|.|..|+||......+......|.. .|+.+...+ .+.+|++++.|++.
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~--~V~~ls~h~--tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE--PVTGLSLHP--TGEYLLSASNDGTW 327 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc--cceeeeecc--CCcEEEEecCCceE
Confidence 56788999999999999999999999999999999999877666555555653 355555555 56799999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..-|+++|.+.. .... .+.... .....++++ .+++.+|
T Consensus 328 ~Fsd~~~g~~lt-----~vs~---------~~s~v~--------------------------~ts~~fHpD--gLifgtg 365 (506)
T KOG0289|consen 328 AFSDISSGSQLT-----VVSD---------ETSDVE--------------------------YTSAAFHPD--GLIFGTG 365 (506)
T ss_pred EEEEccCCcEEE-----EEee---------ccccce--------------------------eEEeeEcCC--ceEEecc
Confidence 999999885321 1000 000000 000012233 3578899
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..|+.+++||+.+......++.+. ..... ..|. .+..+++++++|+.|++||+|+.. .+.++
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght--------~~vk~-----i~Fs----ENGY~Lat~add~~V~lwDLRKl~-n~kt~ 427 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHT--------GPVKA-----ISFS----ENGYWLATAADDGSVKLWDLRKLK-NFKTI 427 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCC--------CceeE-----EEec----cCceEEEEEecCCeEEEEEehhhc-cccee
Confidence 999999999999988777776532 11111 1232 234479999999999999999743 34444
Q ss_pred ec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 249 KV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 249 ~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+- ...++..+.||..+.+++.++.|=+|.+++- .+..+....+..-|..-.+.+.|..+.+++++++.|...+++-+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k--~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK--KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEec--ccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 32 2337999999999999888877766666543 33333333444444445678899999999999999999888743
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=161.88 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=142.1
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccC--CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.++++.+..+.|.|||..+..........+.+ .-.++...+.+++.. + +....+++|++|++|++||+..
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn-----~---~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN-----R---QQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc-----c---ccceeEeeccCCCcEEEEeccc
Confidence 35667777889999998764322211100000 000111112222211 1 1223699999999999999964
Q ss_pred CC------CceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCE
Q 017296 241 PG------IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKI 312 (374)
Q Consensus 241 ~~------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 312 (374)
.. .+...+.+|...|..++|++.. ..|++.+.|+.+.|||++..+. .......+|...+.+++|.| ++.+
T Consensus 210 ~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~~~~ah~~~vn~~~fnp~~~~i 287 (422)
T KOG0264|consen 210 ESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSHSVKAHSAEVNCVAFNPFNEFI 287 (422)
T ss_pred cccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcccccccCCceeEEEeCCCCCce
Confidence 32 2456678999999999997643 4568999999999999985221 22234566778899999999 5667
Q ss_pred EEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 313 AATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
||+|+.|++|++||++.. +++.++.+|...|..|.|+|..+ .|||++.|+.+.+||+.
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 899999999999999875 46788999999999999999776 89999999999999985
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=150.20 Aligned_cols=239 Identities=19% Similarity=0.319 Sum_probs=157.8
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..+..|.++|.+++|+.||..+++|+.|+.+++||+.+++.. .+..|.. .+..+.|-......-|+|||.|+|||.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd~--pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-QVAAHDA--PVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee-eeeeccc--ceeEEEEecCCCcceeEecccccceeec
Confidence 345679999999999999999999999999999999999753 4445654 3666665443234578999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|++...... .+ . .+..++..+ -...+++.+..+
T Consensus 143 D~R~~~pv~----t~----------~-------------LPeRvYa~D--------------------v~~pm~vVata~ 175 (347)
T KOG0647|consen 143 DTRSSNPVA----TL----------Q-------------LPERVYAAD--------------------VLYPMAVVATAE 175 (347)
T ss_pred ccCCCCeee----ee----------e-------------ccceeeehh--------------------ccCceeEEEecC
Confidence 998642211 00 0 001111111 112355666667
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC-Cceeeeec
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKV 250 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~-~~~~~~~~ 250 (374)
+.|.+++|+.+....+..... .+-...|+++ | .+ ....+.|+-.|.+.+..+..+. ..-.+++.
T Consensus 176 r~i~vynL~n~~te~k~~~Sp--------Lk~Q~R~va~--f-~d----~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESP--------LKWQTRCVAC--F-QD----KDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCc--------ccceeeEEEE--E-ec----CCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 889999997764322221110 1112233332 2 22 1235789999999999886531 22345677
Q ss_pred Ccc---------CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE-EEeCC
Q 017296 251 HLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA-TAGWD 319 (374)
Q Consensus 251 h~~---------~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~d 319 (374)
|.. +|+.++|+|....|+|+|.||++.+||-+..+. + ++...+...|++.+|+.+|.++| +.|.|
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k---L-k~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK---L-KTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh---h-hccCcCCCccceeEecCCCCEEEEEeecc
Confidence 762 588899999988999999999999999754321 1 22334556799999999999876 34433
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=155.66 Aligned_cols=300 Identities=17% Similarity=0.241 Sum_probs=189.9
Q ss_pred CCeEEeecCCCceeEEEEeCCC--CEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~--~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
.+..+.+-|.+.|++++|+|.. +++++|+..|+|-+||+.+.++ -....++.+...|.++.|++. +.+++++.|.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-Chhheeeecc
Confidence 4567788899999999999965 5789999999999999942221 112223333456888888885 4478999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
||+||+-|++.+... ..+........++. .++..+++ -+
T Consensus 256 DGtiR~~D~~~~i~e--~v~s~~~d~~~fs~--------------------------------------~d~~~e~~-~v 294 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISE--EVLSLDTDNIWFSS--------------------------------------LDFSAESR-SV 294 (498)
T ss_pred CceeeeeeecchhhH--HHhhcCccceeeee--------------------------------------ccccCCCc-cE
Confidence 999999999875211 00000000001110 01111222 22
Q ss_pred EEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 165 AVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
+ .+..-+...+||++++.. ...+..+ .-+.. .+ .+.| .....+++++.|++.+|||+|.-..
T Consensus 295 l-~~~~~G~f~~iD~R~~~s~~~~~~lh--------~kKI~--sv---~~NP---~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 295 L-FGDNVGNFNVIDLRTDGSEYENLRLH--------KKKIT--SV---ALNP---VCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred E-EeecccceEEEEeecCCccchhhhhh--------hcccc--ee---ecCC---CCchheeecccCcceeeeehhhhcC
Confidence 2 333445889999998764 2211111 00111 11 2222 2334689999999999999975321
Q ss_pred ---ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcC----CCCCeEEEEEeeecCCCC--eEEEEECCCCCEEE
Q 017296 244 ---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD----HSTGSCVIKKEINLERPG--ISGTSIRPDSKIAA 314 (374)
Q Consensus 244 ---~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~ 314 (374)
|+...-.|..+|.+..|+|.+..+++.+.|..|++||.. .....+.+ .....+... ...+.|.|+..+|+
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEE
Confidence 223334699999999999988889999999999999973 11111111 111111111 33568999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCC-ceEE-EEEeCCCC-EEEEEeCCCcEEEec
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHA-TCNA-VSFSSDCK-LMASASEDSTVALWE 368 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~-v~~sp~~~-~las~s~D~~v~~W~ 368 (374)
+|-.-+.|-|+|-..++.+..+-.... .|.+ ..|+|-+. ++|-++.-|.|.+|.
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 999999999999877665555433332 4544 47999888 555557778888875
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=163.21 Aligned_cols=299 Identities=19% Similarity=0.249 Sum_probs=190.7
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc--ceeeeeeeee---ceeeeEEeccCCccccceeeeccccC
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+++.||.+.|+++.|+|++..|+|+|.|+++.+|...+. -.+....... ...+...+-|++ +++.+++-|.-|
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~G 338 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTG 338 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccC
Confidence 345699999999999999999999999999999987542 2222211111 123455566666 557788889999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-+++|.-.....- .....-++|...+ . +....+.+.|++
T Consensus 339 g~hlWkt~d~~~w----~~~~~iSGH~~~V---------------------------~---------dv~W~psGeflL- 377 (764)
T KOG1063|consen 339 GFHLWKTKDKTFW----TQEPVISGHVDGV---------------------------K---------DVDWDPSGEFLL- 377 (764)
T ss_pred cEEEEeccCccce----eeccccccccccc---------------------------e---------eeeecCCCCEEE-
Confidence 9999993321100 0001111111100 0 001122334444
Q ss_pred cccCCCeEEEEecCCCcee-EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC----
Q 017296 167 AGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---- 241 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~---- 241 (374)
+.+.|.|-|++-.-..+.. -.+.. ++.-++-+....+.+. ...+++|.+...+|+|+....
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaR----------PQiHGyDl~c~~~vn~----~~~FVSgAdEKVlRvF~aPk~fv~~ 443 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIAR----------PQIHGYDLTCLSFVNE----DLQFVSGADEKVLRVFEAPKSFVKS 443 (764)
T ss_pred Eeccccceeeecccccccceeeecc----------cccccccceeeehccC----CceeeecccceeeeeecCcHHHHHH
Confidence 4556788888865421111 01110 1111111111122221 123666666666677664210
Q ss_pred ---------------------------CC-------------------------------c-------------eeeeec
Q 017296 242 ---------------------------GI-------------------------------P-------------LTAMKV 250 (374)
Q Consensus 242 ---------------------------~~-------------------------------~-------------~~~~~~ 250 (374)
.+ | ...+-|
T Consensus 444 l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG 523 (764)
T KOG1063|consen 444 LMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG 523 (764)
T ss_pred HHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc
Confidence 00 0 012346
Q ss_pred CccCeEEEEEecCCCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 251 HLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
|...|.+++++|+++.+||++.. .-|+||+... .....++..|...|+.++||||+++|++.+.|+++.+|
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----hhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 88899999999999988887654 4789997643 33344677888899999999999999999999999999
Q ss_pred EccCCe----EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 326 NYRKGS----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 326 d~~~~~----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
...... .++..+.|..-|+...|+|+++++||+|+|++|++|....
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 885432 2445788999999999999999999999999999998743
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=171.00 Aligned_cols=208 Identities=22% Similarity=0.313 Sum_probs=140.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+|+..|.||.+.|..|.|+. ..+|+|+|.|.|||+|++...+|+..+. |. .-|.|++|.|. |.++++||+-|+.
T Consensus 359 ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--dfVTcVaFnPv-DDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HN--DFVTCVAFNPV-DDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cC--CeeEEEEeccc-CCCcEeecccccc
Confidence 379999999999999999985 5699999999999999999888887763 54 45899999996 5689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+|||++...+
T Consensus 434 vRiWsI~d~~---------------------------------------------------------------------- 443 (712)
T KOG0283|consen 434 VRLWSISDKK---------------------------------------------------------------------- 443 (712)
T ss_pred eEEeecCcCe----------------------------------------------------------------------
Confidence 9999996432
Q ss_pred ccCCCeEEEE-ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIW-DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
|-.| |++ + ++.++ .|.|+ | ...++|+-+|.+++|+.+.. +...
T Consensus 444 ------Vv~W~Dl~--~----------------------lITAv-cy~Pd---G-k~avIGt~~G~C~fY~t~~l-k~~~ 487 (712)
T KOG0283|consen 444 ------VVDWNDLR--D----------------------LITAV-CYSPD---G-KGAVIGTFNGYCRFYDTEGL-KLVS 487 (712)
T ss_pred ------eEeehhhh--h----------------------hheeE-EeccC---C-ceEEEEEeccEEEEEEccCC-eEEE
Confidence 1111 000 0 00000 12221 1 12445666666666665431 1111
Q ss_pred ee---------ecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE
Q 017296 247 AM---------KVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 247 ~~---------~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 316 (374)
.. ..|. .|+.+.|.|... -++..+.|..||++|++...-.+.+....+. ..-...+|+.||++|++|
T Consensus 488 ~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISASFSSDGKHIVSA 564 (712)
T ss_pred eeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--CcceeeeEccCCCEEEEe
Confidence 11 1133 788888864332 4788999999999998644333332221111 123457899999999999
Q ss_pred eCCCeEEEEEccC
Q 017296 317 GWDRRVRIYNYRK 329 (374)
Q Consensus 317 ~~dg~v~iwd~~~ 329 (374)
++|..|.+|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=146.26 Aligned_cols=236 Identities=18% Similarity=0.178 Sum_probs=157.0
Q ss_pred CCCCCC-CCeEEeecCCCceeEEEEeC--CCCEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccc
Q 017296 3 KRPPPP-DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLN 77 (374)
Q Consensus 3 ~~~~~~-~~~~~l~gH~~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (374)
.|++.. +++.+|.||++||..++|.. .|.+|+|+|.||.|.||.-+.|+. ......|. ..+.++++.|..-+-
T Consensus 40 v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl 117 (299)
T KOG1332|consen 40 VRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGL 117 (299)
T ss_pred EcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccce
Confidence 355555 89999999999999999954 799999999999999999888864 33334454 347788888876667
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.|+++++||.|++.++++......+.+ ...|- + .++
T Consensus 118 ~LacasSDG~vsvl~~~~~g~w~t~ki----~~aH~------------------------~------Gvn---------- 153 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGGWTTSKI----VFAHE------------------------I------GVN---------- 153 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCCccchhh----hhccc------------------------c------ccc----------
Confidence 899999999999999876311110000 00000 0 000
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
-.-|...+. +. . .... .. ......|++|..|+.|+||+
T Consensus 154 ----------------sVswapa~~------~g-----~-~~~~---~~-----------~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 154 ----------------SVSWAPASA------PG-----S-LVDQ---GP-----------AAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred ----------------eeeecCcCC------Cc-----c-cccc---Cc-----------ccccceeeccCCccceeeee
Confidence 000100000 00 0 0000 00 00112589999999999999
Q ss_pred ccCCC-CceeeeecCccCeEEEEEecCC----CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 238 IRNPG-IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 238 l~~~~-~~~~~~~~h~~~v~~~~~~~~~----~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
..+.. ..-.++.+|.+.|+.+++.|.. .+++++|.||++.+|..+...+...... +......+..++||+.|.+
T Consensus 192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~ 270 (299)
T KOG1332|consen 192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNI 270 (299)
T ss_pred cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccE
Confidence 87532 1223478999999999997653 3569999999999998874433332111 1112356899999999999
Q ss_pred EEEEeCCCeEEEEEc
Q 017296 313 AATAGWDRRVRIYNY 327 (374)
Q Consensus 313 l~s~~~dg~v~iwd~ 327 (374)
|+.++.|+.|.+|--
T Consensus 271 LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKE 285 (299)
T ss_pred EEEecCCcEEEEEEe
Confidence 999999999999954
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-18 Score=151.31 Aligned_cols=269 Identities=12% Similarity=0.124 Sum_probs=165.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eecccc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRD 85 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D 85 (374)
.+++..+.+|.. +.+++|+|+++.+ ++++.|+.|++||..+++.+..+..+. ....+++++ +++.+ ++++.|
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~g~~l~~~~~~~ 94 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DPELFALHP--NGKILYIANEDD 94 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---CccEEEECC--CCCEEEEEcCCC
Confidence 356777777654 6789999999876 577889999999998887665544332 233455665 44555 456678
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
+++++||+.+++... .+... . . +.. + .+ .+++.+++
T Consensus 95 ~~l~~~d~~~~~~~~----~~~~~-------------~--------~-------~~~-~----------~~-~~dg~~l~ 130 (300)
T TIGR03866 95 NLVTVIDIETRKVLA----EIPVG-------------V--------E-------PEG-M----------AV-SPDGKIVV 130 (300)
T ss_pred CeEEEEECCCCeEEe----EeeCC-------------C--------C-------cce-E----------EE-CCCCCEEE
Confidence 999999998653110 00000 0 0 000 0 01 12234444
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++......+.+||+++++....+.... .... ..+.+ .+...++++..++.|++||+++. ...
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------~~~~---~~~s~---dg~~l~~~~~~~~~v~i~d~~~~-~~~ 192 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ-----------RPRF---AEFTA---DGKELWVSSEIGGTVSVIDVATR-KVI 192 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC-----------CccE---EEECC---CCCEEEEEcCCCCEEEEEEcCcc-eee
Confidence 444444567888998876554332110 0011 12322 23323345567999999999763 233
Q ss_pred eeeecCc-----c--CeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE-
Q 017296 246 TAMKVHL-----E--PVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA- 316 (374)
Q Consensus 246 ~~~~~h~-----~--~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~- 316 (374)
..+..+. . ....+.+++++..++ +.+.++.+.+||++.. ... .... +...+.+++|+|++++|+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--~~~--~~~~-~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--EVL--DYLL-VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--cEE--EEEE-eCCCcceEEECCCCCEEEEEc
Confidence 3332221 1 234577888887644 4456778999998643 222 1111 23458899999999998876
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
+.+++|++||+++++.+.+++.+ ...+.++|+|
T Consensus 268 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 268 GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 56899999999999998888754 5668888876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=173.26 Aligned_cols=239 Identities=21% Similarity=0.314 Sum_probs=183.0
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
+.+..|...|.++..-..++.+++|+.|-.+.+|.....-.+..+.+|.. .|-++.|.. .+..++.|+.||+||+|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--pIeSl~f~~--~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--PIESLTFDT--SERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC--cceeeecCc--chhhhcccccCCceeee
Confidence 34567999999999877788999999999999999876666667777763 477777776 34577788888999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|+++++..+ +. .|..+
T Consensus 98 DleeAk~vr-------tL---------------------------------------------------------tgh~~ 113 (825)
T KOG0267|consen 98 DLEEAKIVR-------TL---------------------------------------------------------TGHLL 113 (825)
T ss_pred ehhhhhhhh-------hh---------------------------------------------------------hcccc
Confidence 987653110 00 00000
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
+.++| .|.| -..+.++|+.|..+++||.+..+ +...+++|
T Consensus 114 ~~~sv-----------------------------------~f~P----~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~ 153 (825)
T KOG0267|consen 114 NITSV-----------------------------------DFHP----YGEFFASGSTDTDLKIWDIRKKG-CSHTYKSH 153 (825)
T ss_pred Cccee-----------------------------------eecc----ceEEeccccccccceehhhhccC-ceeeecCC
Confidence 00100 0111 01135678999999999998644 57778899
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
...+.++.|.|++.++++++.|.++++||+..+ .+..+++.|...+.++.|+|..-++++|+.|++|++||+++.+
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 999999999999999999999999999998532 2345666677778889999999999999999999999999988
Q ss_pred EEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 332 ALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 332 ~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
.+.........|-+++|+|+++.+++|-++.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8887777778999999999999998876554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-18 Score=143.44 Aligned_cols=187 Identities=20% Similarity=0.253 Sum_probs=128.5
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++.+++.|.+++|||..|-+....+.......+...+ .+.+. .-++++|..|-+|++-|+.+. .
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS----p~a~s-----------HcLiA~gtr~~~VrLCDi~SG-s 179 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS----PMAMS-----------HCLIAAGTRDVQVRLCDIASG-S 179 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecCceeehhhcC----hhhhc-----------ceEEEEecCCCcEEEEeccCC-c
Confidence 4678889999999999998766555433222111111 11111 125788999999999999874 4
Q ss_pred ceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeE-EEE----------EeeecCCCCeEEEEECCCCC
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSC-VIK----------KEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~-~~~----------~~~~~~~~~v~~~~~sp~~~ 311 (374)
.-.+++||.+.|..+.++|.... |++||.||.||+||++...+-. .+. +....|...+.+++|+.++.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 56789999999999999886554 5899999999999997543321 111 11234566789999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEE----E------------e-cccCCceEEEEEeCCC--CEEEEEeCCCcEEEecC
Q 017296 312 IAATAGWDRRVRIYNYRKGSALA----I------------L-KYHHATCNAVSFSSDC--KLMASASEDSTVALWEL 369 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~----~------------~-~~h~~~v~~v~~sp~~--~~las~s~D~~v~~W~~ 369 (374)
++++.+.|.++++|+...|+--. . . .+|... +.+-|.+ -+|.+..+-..|+.|+.
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~v---fv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDV---FVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred hhhhccCccceEEeecccCcccccccccccccccccceEEEeecccce---EEEEecCCeEEEEEccCceEEEeeec
Confidence 99999999999999998764210 0 0 111111 1223432 36677778888888875
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=156.31 Aligned_cols=212 Identities=22% Similarity=0.349 Sum_probs=153.8
Q ss_pred eecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 14 l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
..||++.|.+|.|+. -.++|+|||.|.+|++||+.+|++..++..|. ..|.++.|.+. ....|++|+.|++|++.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPY-EPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCC-CceEEEeccccceEEeee
Confidence 348999999999986 46789999999999999999999988877554 35888888875 347899999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
.+...... ..+-+ .| +-
T Consensus 316 ~R~~~~s~------------------------------------------------------------~~wk~-~g--~V 332 (463)
T KOG0270|consen 316 CRDPSNSG------------------------------------------------------------KEWKF-DG--EV 332 (463)
T ss_pred ccCccccC------------------------------------------------------------ceEEe-cc--ce
Confidence 87421000 00000 00 00
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
....|+-.+ ...++++++||+|+-+|+|+++.++.+++.|.
T Consensus 333 Ekv~w~~~s---------------------------------------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 333 EKVAWDPHS---------------------------------------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred EEEEecCCC---------------------------------------ceeEEEecCCceEEeeecCCCCCceeEEEecc
Confidence 122332110 11367889999999999999989999999999
Q ss_pred cCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEccCC
Q 017296 253 EPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 253 ~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~ 330 (374)
++|.+++++..-+ .++++|.|+.+++|++.....+..-...++- ....+.++.|+-. ++|.||..+.++|||+.+.
T Consensus 374 ~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc--cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999975433 4678999999999999866554332222221 2355666777644 5778888889999999775
Q ss_pred eE
Q 017296 331 SA 332 (374)
Q Consensus 331 ~~ 332 (374)
..
T Consensus 452 ~~ 453 (463)
T KOG0270|consen 452 SP 453 (463)
T ss_pred hh
Confidence 43
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=154.23 Aligned_cols=199 Identities=21% Similarity=0.385 Sum_probs=141.8
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCc-----cCCCCCcC---CCCCcceeEEEeeecCCCCCceEEEEEecCC
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-----CGGSPNFS---SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg 231 (374)
+...++++-+..|.|+|||+..-- ..+.... ....+.|. +.+.++.+ .++|. ..+ .+++|.--+
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L---dWSp~-~~g--~LlsGDc~~ 234 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHL--NALSEPGLEVKDSEFRPLFTFNGHKGEGYGL---DWSPI-KTG--RLLSGDCVK 234 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhh--hhhcCccccccccccCceEEecccCccceee---ecccc-ccc--ccccCcccc
Confidence 345678888899999999986421 1111100 00011111 11122211 12221 112 477887788
Q ss_pred cEEEEeccCCC--CceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCC-eEEEEEeeecCCCCeEEEEEC
Q 017296 232 SILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTG-SCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 232 ~i~iwdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~~~~s 307 (374)
.|++|...+.. ..-..+.+|+..|..+.++|... .|+|+|.||+|++||++.... .+++. ++|...|..++|+
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~sDVNVISWn 311 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNSDVNVISWN 311 (440)
T ss_pred ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCCceeeEEcc
Confidence 99999986632 12334668999999999987554 568999999999999986532 23333 6677889999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccC---CeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecC
Q 017296 308 PDSKIAATAGWDRRVRIYNYRK---GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 369 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~ 369 (374)
....+||+|+.||+++|||++. ++++++++.|..+|++|.|+|... .|+.+|+|..|.|||+
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9888999999999999999975 467789999999999999999654 7888899999999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=151.60 Aligned_cols=288 Identities=20% Similarity=0.296 Sum_probs=186.4
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccc-eeeeccccCeEEEEecC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE 94 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~~vrvwd~~ 94 (374)
.++|++|.|+|...+|++|+.|++++++.+.... .+..+ |.....+.+.+|.+ .+. .+++++.-..+-.||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~--~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI--HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee--eeccCccceeeecC--CCceEEEecccceEEEEeecc
Confidence 5899999999999999999999999999974322 23332 44445678888887 344 88899999999999998
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
+++... ++.+.... ......++ + .....+++++|. .+.|
T Consensus 289 ~ak~~k------------------~~~~~g~e-----~~~~e~Fe----------------V-Shd~~fia~~G~-~G~I 327 (514)
T KOG2055|consen 289 TAKVTK------------------LKPPYGVE-----EKSMERFE----------------V-SHDSNFIAIAGN-NGHI 327 (514)
T ss_pred cccccc------------------ccCCCCcc-----cchhheeE----------------e-cCCCCeEEEccc-CceE
Confidence 875321 00000000 00000000 0 122346666665 5788
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc-
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE- 253 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~- 253 (374)
.+--..|++.+..+..+. .+... .|. +.+ ..+++.+.+|.|.+||++.+. .+..+.. .+
T Consensus 328 ~lLhakT~eli~s~KieG-------------~v~~~-~fs---Sds-k~l~~~~~~GeV~v~nl~~~~-~~~rf~D-~G~ 387 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIEG-------------VVSDF-TFS---SDS-KELLASGGTGEVYVWNLRQNS-CLHRFVD-DGS 387 (514)
T ss_pred Eeehhhhhhhhheeeecc-------------EEeeE-EEe---cCC-cEEEEEcCCceEEEEecCCcc-eEEEEee-cCc
Confidence 888877877666554321 11111 122 233 357777889999999998753 3443332 22
Q ss_pred -CeEEEEEecCCCceEEEecCCeEEEEEcCCCC--CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC--CCeEEEEEcc
Q 017296 254 -PVLCLSIDESCNGGISGGADQKIVLYNLDHST--GSCVIKKEINLERPGISGTSIRPDSKIAATAGW--DRRVRIYNYR 328 (374)
Q Consensus 254 -~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--dg~v~iwd~~ 328 (374)
.-++++.+.++.++|+||..|.|.+||.+.-- ........+..-...|++++|+||+++||.++. +..+|+-.+-
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 23445556777899999999999999965310 000011111222346899999999999876654 6678887765
Q ss_pred CCeEEEEec---ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILK---YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~---~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.....-+. ..-+.|.|++|||.+-+||.|-++|.|.+|.+-
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 544333222 223578999999999999999999999999873
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=160.52 Aligned_cols=263 Identities=21% Similarity=0.357 Sum_probs=163.4
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc--------cceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
+..+++.|.+.|+.++|++....|++++.|+++++|+++. -+++.++.+|.. .|.|++... .+.++.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g--PVl~v~v~~--n~~~~ys 361 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG--PVLCVVVPS--NGEHCYS 361 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC--ceEEEEecC--CceEEEe
Confidence 5569999999999999999999999999999999999832 235667777764 477877776 5679999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
||-||+||.|++..+.-.... + ++.. . .
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds---------~--------dp~v-------------------l---------------~- 389 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDS---------Y--------DPSV-------------------L---------------S- 389 (577)
T ss_pred eccCceeeeeccCCCCCcccc---------c--------Ccch-------------------h---------------c-
Confidence 999999999998732110000 0 0000 0 0
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
. .+.|-.| .+|-+. +. .....|++++.||++++|+....
T Consensus 390 ~--~l~Ghtd---avw~l~--------------------------------~s----~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 390 G--TLLGHTD---AVWLLA--------------------------------LS----STKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred c--ceecccc---ceeeee--------------------------------ec----ccccceeeecCCceEEeeccCCc
Confidence 0 0011111 122110 10 11124777888888888877542
Q ss_pred CCc-eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC-CCeEEEEEeee-----cCCCCeEEEEECCCCCEEE
Q 017296 242 GIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TGSCVIKKEIN-----LERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 242 ~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~-~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~ 314 (374)
..+ +..-+.|.- -..+.+-.... +-...+.+.+.+++... .++........ .....+.-+..+|+..+.+
T Consensus 429 ~~~~f~~~~e~g~-Plsvd~~ss~~--a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 429 SPCTFGEPKEHGY-PLSVDRTSSRP--AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CccccCCccccCC-cceEeeccchh--HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 211 111111221 22233311110 11111222222222211 01111100000 0112355677889999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++..|+.|+++|..+++.+....+|...++++++-|+|.+|++++.|+.|++|++..+
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999999999999999999999999999999999999999999999999999998643
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-18 Score=145.39 Aligned_cols=252 Identities=18% Similarity=0.280 Sum_probs=168.3
Q ss_pred EEeecCCCceeEEEEeCCC--CEEEEecCCCcEEEEeCcc----------------cceeeeeeeeeceeeeEEeccCCc
Q 017296 12 AVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVATGPS 73 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~--~~l~s~s~D~~v~vWd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (374)
....+|.+.|+.++-.+-+ .+.++=++.|.|.|||+.. .+++.++.+|. ...+++.|++.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk--~EGy~LdWSp~ 222 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK--GEGYGLDWSPI 222 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC--ccceeeecccc
Confidence 3445799999999888765 5677778999999999642 24556666665 23567777774
Q ss_pred cccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC
Q 017296 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (374)
Q Consensus 74 ~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (374)
.. ..|+||---+.|++|.+.+|.-. + . ..|+
T Consensus 223 ~~-g~LlsGDc~~~I~lw~~~~g~W~------v-------d-----~~Pf------------------------------ 253 (440)
T KOG0302|consen 223 KT-GRLLSGDCVKGIHLWEPSTGSWK------V-------D-----QRPF------------------------------ 253 (440)
T ss_pred cc-cccccCccccceEeeeeccCcee------e-------c-----Cccc------------------------------
Confidence 43 35677776778888888765210 0 0 0000
Q ss_pred CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcE
Q 017296 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (374)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i 233 (374)
+| .... +..+ .++ |+. ...++++|-||+|
T Consensus 254 -------------~g-H~~S-----------VEDL---------qWS--------------ptE---~~vfaScS~DgsI 282 (440)
T KOG0302|consen 254 -------------TG-HTKS-----------VEDL---------QWS--------------PTE---DGVFASCSCDGSI 282 (440)
T ss_pred -------------cc-cccc-----------hhhh---------ccC--------------Ccc---CceEEeeecCceE
Confidence 00 0000 0000 011 110 1147889999999
Q ss_pred EEEeccCC-CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CC
Q 017296 234 LVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SK 311 (374)
Q Consensus 234 ~iwdl~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~ 311 (374)
+|||+|.. ..+....+.|...|+-++++.....+++|+.||++++||++..+.. .....++.|...|+++.|+|. ..
T Consensus 283 rIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCc
Confidence 99999875 2233344889999999999988878899999999999999764332 123456778899999999995 55
Q ss_pred EEEEEeCCCeEEEEEccCCe--------EE--------EEeccc--CCceEEEEEeCCCC-EEEEEeCCCcEEE
Q 017296 312 IAATAGWDRRVRIYNYRKGS--------AL--------AILKYH--HATCNAVSFSSDCK-LMASASEDSTVAL 366 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~--------~~--------~~~~~h--~~~v~~v~~sp~~~-~las~s~D~~v~~ 366 (374)
.|+++|.|..|.+||+..-. .. +.+--| ...+..|.|++.-. +|+|.+.||.--+
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 78889999999999995210 00 112224 34678899998655 8999999996433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-20 Score=169.01 Aligned_cols=147 Identities=17% Similarity=0.293 Sum_probs=120.9
Q ss_pred EEEEEecCCcEEEEeccCC--CCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNP--GIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
+|++++..|.|-+||+..+ ...++.+..|...++++.|+... ..+++||+||+||+||++......... ....
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----~nSE 177 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----SNSE 177 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc----ccch
Confidence 5889999999999999752 23455788899999999997643 457899999999999998654433322 1334
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEEccCCe-EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 300 GISGTSIRPD-SKIAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 300 ~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.|+.+.|+|. +.+++++...|.+++||++... +...+.+|.++|.++.|+|++.+|||||.|++||||+++.+.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 6899999994 6678999999999999998764 445678999999999999999999999999999999998653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=145.62 Aligned_cols=116 Identities=21% Similarity=0.364 Sum_probs=92.9
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc-
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR- 328 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~- 328 (374)
.|.-++..+.+-....++++++.|..|.||++.++. ...++..+..-.-.++||+|++||+++.---|++|..-
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~-----L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL-----LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecCCce-----eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 366677777777777788999999999999997431 12233233334557899999999999999999999873
Q ss_pred --CCe-----EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 --KGS-----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 --~~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|+ ....|++|...|.+++|+|+.+.++|.|.||++||||.+
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 332 345789999999999999999999999999999999975
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-17 Score=135.77 Aligned_cols=296 Identities=16% Similarity=0.185 Sum_probs=184.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++..+|.. .. ..|+.|++-|.+|++|..||.|.+||+.+...-..+.+|. +.+.+++|+. +++.|+|+|.|-.+
T Consensus 16 el~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~--dgr~LltsS~D~si 89 (405)
T KOG1273|consen 16 ELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSR--DGRKLLTSSRDWSI 89 (405)
T ss_pred hhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc--cceeEEEecC--CCCEeeeecCCcee
Confidence 34444442 22 7899999999999999999999999998876555666665 4588999987 78999999999999
Q ss_pred EEEecCCCCCCCCCceeeeecc-eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
++||+..|.+.. .++-.+ ...+....-+ ....++.
T Consensus 90 ~lwDl~~gs~l~----rirf~spv~~~q~hp~k----------------------------------------~n~~va~ 125 (405)
T KOG1273|consen 90 KLWDLLKGSPLK----RIRFDSPVWGAQWHPRK----------------------------------------RNKCVAT 125 (405)
T ss_pred EEEeccCCCcee----EEEccCccceeeecccc----------------------------------------CCeEEEE
Confidence 999999885321 222111 1111111000 0000000
Q ss_pred ccC-CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~-d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
-.. .-.+..++-....++..-.. .....+.. ...| + .-..++++|...|-+.++|..+. ..+.
T Consensus 126 ~~~~sp~vi~~s~~~h~~Lp~d~d----~dln~sas-------~~~f--d--r~g~yIitGtsKGkllv~~a~t~-e~va 189 (405)
T KOG1273|consen 126 IMEESPVVIDFSDPKHSVLPKDDD----GDLNSSAS-------HGVF--D--RRGKYIITGTSKGKLLVYDAETL-ECVA 189 (405)
T ss_pred EecCCcEEEEecCCceeeccCCCc----cccccccc-------cccc--c--CCCCEEEEecCcceEEEEecchh-eeee
Confidence 000 00111111000000000000 00000000 0001 1 11236899999999999998764 3455
Q ss_pred eeecCc-cCeEEEEEecCCCceEEEecCCeEEEEEcCCC--CCe-EEEEEeeec----CCCCeEEEEECCCCCEEEEEeC
Q 017296 247 AMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TGS-CVIKKEINL----ERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 247 ~~~~h~-~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~--~~~-~~~~~~~~~----~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
.++.-. ..|..+.+...+..++..+.|..||.|++..- .++ .....+.+. .+-.=.+++||.+|.|+..|+.
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 554444 68888999888999999999999999998521 000 000000000 0001236899999999876664
Q ss_pred -CCeEEEEEccCCeEEEEecccC-CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 319 -DRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 319 -dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-..+.||....|..++.|.|.+ +....|.|+|-...|++- +.|+|++|....
T Consensus 270 ~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 270 RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 4679999999999999998887 677889999998899987 689999998643
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=148.79 Aligned_cols=269 Identities=16% Similarity=0.216 Sum_probs=175.9
Q ss_pred ecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeee
Q 017296 36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (374)
Q Consensus 36 ~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (374)
+|...++++||.........+..|...+++.++.|... ..-.+++-+.|+.+++|.-... ...-|.....+.....|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~C- 84 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFC- 84 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeecccc-ceEEEeecCCceeEEEecccCC-CCccceeeccccchHHH-
Confidence 34455799999865444344445666677888888753 1123456678999999986432 11111111101110111
Q ss_pred eeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCC
Q 017296 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (374)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~ 195 (374)
.. ......+.++|+..+.|+|||++...+...+..+
T Consensus 85 --------------------v~--------------------~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh---- 120 (673)
T KOG4378|consen 85 --------------------VA--------------------CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDH---- 120 (673)
T ss_pred --------------------Hh--------------------hhhcceeeeccCcCceeeehhhHHHHHhhhccCC----
Confidence 00 0011235677888899999999955444444322
Q ss_pred CCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC-ccCeEEEEEecCCCce-EEEecC
Q 017296 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGG-ISGGAD 273 (374)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~-~s~s~D 273 (374)
.....++ .+. ..--++++++..|.|.|..+.+. ...++++.. ...|+-+.+++..+.+ .++|.+
T Consensus 121 ------~stvt~v---~YN----~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 121 ------QSTVTYV---DYN----NTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred ------cceeEEE---Eec----CCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccC
Confidence 1122221 121 11126899999999999998753 333444433 3456678887765544 578999
Q ss_pred CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 274 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 274 ~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
|.|.|||+......+.. ...|......+||+| +..+|++-|.|++|.+||....+...++. -..+..+|+|+++|
T Consensus 187 G~VtlwDv~g~sp~~~~---~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHA---SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECG 262 (673)
T ss_pred CeEEEEeccCCCcccch---hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCc
Confidence 99999999765544332 234666788999999 57788999999999999998766666664 34577899999999
Q ss_pred CEEEEEeCCCcEEEecC
Q 017296 353 KLMASASEDSTVALWEL 369 (374)
Q Consensus 353 ~~las~s~D~~v~~W~~ 369 (374)
.+|+.|+..|.|..||+
T Consensus 263 ~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDM 279 (673)
T ss_pred eEEEeecCCceEEEEec
Confidence 99999999999999998
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=150.77 Aligned_cols=233 Identities=18% Similarity=0.290 Sum_probs=169.2
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCC
Q 017296 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP 102 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~ 102 (374)
-+.|+ ..+.|+.|. +..|.+|+..+++.......+ ...+.++.+++ ++++|+.|-.+|+|.+||..+.+.....
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG--EELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC--CCceEEEEECC--CCCEEEEeecCCeEEEEehhhccccccc
Confidence 45666 344566554 568999999988754333333 35688888887 6789999999999999998764321100
Q ss_pred ceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCC
Q 017296 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (374)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~ 182 (374)
..+ + ..+ + ...-|+
T Consensus 256 -------~~~--------------------h--------------------------~~r-v--------g~laW~---- 269 (484)
T KOG0305|consen 256 -------RGS--------------------H--------------------------ASR-V--------GSLAWN---- 269 (484)
T ss_pred -------cCC--------------------c--------------------------Cce-e--------EEEecc----
Confidence 000 0 000 0 001110
Q ss_pred ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec
Q 017296 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE 262 (374)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~ 262 (374)
...+.+|+.|+.|..+|++........+++|...|-.+.+++
T Consensus 270 --------------------------------------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 270 --------------------------------------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred --------------------------------------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 013677999999999999876544445889999999999999
Q ss_pred CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEe--CCCeEEEEEccCCeEEEEeccc
Q 017296 263 SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAG--WDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~h 339 (374)
++..+|+|+.|+.+.+||...... ...+..|...|.+++|+| +..+||+|+ .|++|++||..+++.+..+. -
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t 386 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T 386 (484)
T ss_pred CCCeeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence 999999999999999999843322 233455777899999999 567888877 49999999999999988776 3
Q ss_pred CCceEEEEEeCCCCEEEEE--eCCCcEEEecCC
Q 017296 340 HATCNAVSFSSDCKLMASA--SEDSTVALWELY 370 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~--s~D~~v~~W~~~ 370 (374)
...|.+|.|++..+.|+++ -.+..|.||++-
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 4689999999998877664 467789999873
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=146.77 Aligned_cols=245 Identities=18% Similarity=0.256 Sum_probs=173.9
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCccccee-eeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
.++|++|||+.+.+.|+.+=+||.|.+|++...-.. ..+.++. ...+-.++|+. +.+|.|.+.+|+|--||+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~-drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE-DRSIESLAWAE---GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCC-CCceeeEEEcc---CCeEEeecCCceEEEEecccC
Confidence 488999999999999999999999999999765332 2333332 23466778873 468999999999999999876
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
+... ... . ...-+
T Consensus 101 k~~~----~~d----------------------------------------------------------~-----~gg~I 113 (691)
T KOG2048|consen 101 KQKY----NID----------------------------------------------------------S-----NGGAI 113 (691)
T ss_pred ceeE----Eec----------------------------------------------------------C-----CCcce
Confidence 3210 000 0 01224
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce-eeeecCccCe
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKVHLEPV 255 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~-~~~~~h~~~v 255 (374)
|.+.-. + -...++.|++||.+..++........ ..+..-+..+
T Consensus 114 Wsiai~--------------------------------p----~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 114 WSIAIN--------------------------------P----ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred eEEEeC--------------------------------C----ccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 533210 0 00136678889977777664322111 1233346889
Q ss_pred EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe---eec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
.+++|++++..+++|+.||.|++||....+........ +.. ..--|+++.|-.++ .||||..-|+|.+||...+.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc
Confidence 99999999988999999999999999765433311111 111 12236777776555 68999999999999999999
Q ss_pred EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 332 ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 332 ~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++.+..|.+.|.+++-.+++.++++++.|+.|.-+...
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 999999999999999999999999999999999877654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-16 Score=136.68 Aligned_cols=280 Identities=17% Similarity=0.244 Sum_probs=176.7
Q ss_pred CeEEeecCC-CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~-~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
...+++++. +-|.|++|.++|. ++||..+|.|.||+..+-+.......|. .++.+++.-- + -.|+||+.|..|
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~-GtllSGgKDRki 310 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--D-GTLLSGGKDRKI 310 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--C-ccEeecCccceE
Confidence 344566654 5689999998775 6899999999999986555444433454 4566666543 3 367889999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..||-...+... ..+ |.. ++ +-.++. ..++. ++.|
T Consensus 311 ~~Wd~~y~k~r~---~el---------------Pe~----~G---------~iRtv~------------e~~~d--i~vG 345 (626)
T KOG2106|consen 311 ILWDDNYRKLRE---TEL---------------PEQ----FG---------PIRTVA------------EGKGD--ILVG 345 (626)
T ss_pred Eecccccccccc---ccC---------------chh----cC---------CeeEEe------------cCCCc--EEEe
Confidence 999933221100 000 000 00 000000 01111 2223
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..-+.|..=.++.+..+.... +.. .+. .+.. .+....++++++|+.+++|+ . .++. --
T Consensus 346 TtrN~iL~Gt~~~~f~~~v~g---------h~d---elw----gla~--hps~~q~~T~gqdk~v~lW~-~--~k~~-wt 403 (626)
T KOG2106|consen 346 TTRNFILQGTLENGFTLTVQG---------HGD---ELW----GLAT--HPSKNQLLTCGQDKHVRLWN-D--HKLE-WT 403 (626)
T ss_pred eccceEEEeeecCCceEEEEe---------ccc---cee----eEEc--CCChhheeeccCcceEEEcc-C--Ccee-EE
Confidence 332334333333333222221 111 000 1111 11223589999999999999 2 2222 22
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.-.++..|+.|+|.+ .++.|..-|.-.+.|.+... + ... +.....++.+.|+|+|.++|.|+.|+.|.||-+.
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---l-v~~-~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---L-VTI-HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEEecccce---e-EEE-EecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 3357899999999999 88999999999999887531 1 111 2225679999999999999999999999999886
Q ss_pred CC-eEEEEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 329 KG-SALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 329 ~~-~~~~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.. +.+.... .|..+|..+.||+|+++|.+-|-|--|-+|.
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 54 4443332 2337999999999999999999999999993
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=138.63 Aligned_cols=207 Identities=20% Similarity=0.357 Sum_probs=147.3
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC--EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~--~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
.+.+..+..|.+.|+++.|.++-. .|+||++||.|.+|+.....++.++..|... |.-++..| .+...+|.|.|
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D 148 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGD 148 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCC
Confidence 456778889999999999998775 8999999999999999988888999888743 66677776 35678899999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
+.+|+||+.+|+... + +. ++. .+. .+ .+.+.+ .+++
T Consensus 149 ~~lr~WNLV~Gr~a~----v--------~~---L~~-~at-----------------~v----------~w~~~G-d~F~ 184 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAF----V--------LN---LKN-KAT-----------------LV----------SWSPQG-DHFV 184 (362)
T ss_pred ceeeeehhhcCccce----e--------ec---cCC-cce-----------------ee----------EEcCCC-CEEE
Confidence 999999999885311 0 00 000 000 00 011122 3334
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
+.+. +.|-+|-+.+......+.. +-+.+|.. | .....+++|.+|+.|++||-.. ..+.
T Consensus 185 v~~~--~~i~i~q~d~A~v~~~i~~-----------~~r~l~~~---~-----l~~~~L~vG~d~~~i~~~D~ds-~~~~ 242 (362)
T KOG0294|consen 185 VSGR--NKIDIYQLDNASVFREIEN-----------PKRILCAT---F-----LDGSELLVGGDNEWISLKDTDS-DTPL 242 (362)
T ss_pred EEec--cEEEEEecccHhHhhhhhc-----------cccceeee---e-----cCCceEEEecCCceEEEeccCC-Cccc
Confidence 4443 4789998776554333321 11233322 1 1122588999999999999875 6778
Q ss_pred eeeecCccCeEEEEE--ecCCCceEEEecCCeEEEEEcCCC
Q 017296 246 TAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHS 284 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~--~~~~~~~~s~s~D~~i~lwd~~~~ 284 (374)
..+.+|...|..+.+ ++.+.+++|+|.||.|++||++..
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 889999999999986 677788999999999999999754
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=145.55 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=117.5
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
..|++||.|.+|++||+.+ +++..++..|..+|.++.|++. ...+++||.|+++++.|++...... ...+. ...
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~wk~-~g~ 331 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KEWKF-DGE 331 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ceEEe-ccc
Confidence 3688999999999999986 5678888889999999999874 4567899999999999997432211 11111 235
Q ss_pred eEEEEECCCCC-EEEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 301 ISGTSIRPDSK-IAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 301 v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
|-.++|.|... .++++..||+|+-+|.+.. +++.++++|.+.|.++.+++.-+ +|+|+|.|++|++|++.
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 77888888544 5778889999999999875 89999999999999999987655 89999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-18 Score=140.70 Aligned_cols=258 Identities=15% Similarity=0.201 Sum_probs=166.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.+++|-.|.++|++|.|+|...+|+||+.|++|+++|......-..++.....+.+.+++|.|+ +..++.|-.--++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~ 240 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTL 240 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCce
Confidence 46788999999999999999999999999999999999864322222222234567899999884 5678888888899
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|++|+++-++.- +. .|... ..+... .+.. ... .-+-+++
T Consensus 241 rlYdv~T~Qcfv----------------sa--nPd~q---ht~ai~--------~V~Y----------s~t--~~lYvTa 279 (430)
T KOG0640|consen 241 RLYDVNTYQCFV----------------SA--NPDDQ---HTGAIT--------QVRY----------SST--GSLYVTA 279 (430)
T ss_pred eEEeccceeEee----------------ec--Ccccc---ccccee--------EEEe----------cCC--ccEEEEe
Confidence 999998753310 00 00000 000000 0000 011 1245678
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.||.|++||--+++|+.++... +.+..+|.++ |. .+..++++.+.|..+++|.+.+ +.++...
T Consensus 280 SkDG~IklwDGVS~rCv~t~~~A---------H~gsevcSa~--Ft----kn~kyiLsSG~DS~vkLWEi~t-~R~l~~Y 343 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIGNA---------HGGSEVCSAV--FT----KNGKYILSSGKDSTVKLWEIST-GRMLKEY 343 (430)
T ss_pred ccCCcEEeeccccHHHHHHHHhh---------cCCceeeeEE--Ec----cCCeEEeecCCcceeeeeeecC-CceEEEE
Confidence 88999999998888887776532 2233445443 32 2334789999999999999976 3445555
Q ss_pred ecCc-----cCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 249 KVHL-----EPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 249 ~~h~-----~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.|.. .--+...|+....+++. --..+.+.-||.+......++ .-.|...++.+.-||.+..+.+++.|..+
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCCCceEEEeCCCCCceeeeccccee
Confidence 4431 00111223333333332 223567888988654332222 12467789999999999999999999999
Q ss_pred EEEEcc
Q 017296 323 RIYNYR 328 (374)
Q Consensus 323 ~iwd~~ 328 (374)
|+|-.+
T Consensus 421 RFWyrr 426 (430)
T KOG0640|consen 421 RFWYRR 426 (430)
T ss_pred eeeeec
Confidence 999653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=153.85 Aligned_cols=309 Identities=16% Similarity=0.293 Sum_probs=181.3
Q ss_pred CCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCccc--c--eeeeee-eeeceeeeEEeccCCccccceeeec
Q 017296 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH--R--TVSSSW-VHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
..++.|..|+..|..++.+++ +.+++|||.||+||+||+..- . ...... -+.....+.++.++. .++++|.+
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~ 1116 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVS 1116 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEE
Confidence 478899999999999999865 499999999999999997431 1 111111 121234566666665 45789999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.||.|++.+++-.... . .. ........ ....+.++.+. .+....+-
T Consensus 1117 t~DG~v~~~~id~~~~~---~----~~---~~~~ri~n----------------~~~~g~vv~m~-------a~~~~~~S 1163 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVS---K----RV---ATQVRIPN----------------LKKDGVVVSMH-------AFTAIVQS 1163 (1431)
T ss_pred cCCCeEEEEEccccccc---c----ce---eeeeeccc----------------ccCCCceEEee-------cccccccc
Confidence 99999999999752110 0 00 00000000 00000011110 01111112
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+++.+...+.|..||++....+..+... .+ .+++.+ +..+ .+...+++|+..|.+.+||+|-.
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~---------~~-hG~vTS---i~id--p~~~WlviGts~G~l~lWDLRF~- 1227 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQ---------LR-HGLVTS---IVID--PWCNWLVIGTSRGQLVLWDLRFR- 1227 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcC---------cc-ccceeE---EEec--CCceEEEEecCCceEEEEEeecC-
Confidence 34556666788999999876544333211 11 111111 1112 22237999999999999999863
Q ss_pred Cceeee-ecCccCeEEEEEecCCC---ceE-EEe-cCCeEEEEEcCCCCCeEEEEEe-----ee----cC----CCC--e
Q 017296 243 IPLTAM-KVHLEPVLCLSIDESCN---GGI-SGG-ADQKIVLYNLDHSTGSCVIKKE-----IN----LE----RPG--I 301 (374)
Q Consensus 243 ~~~~~~-~~h~~~v~~~~~~~~~~---~~~-s~s-~D~~i~lwd~~~~~~~~~~~~~-----~~----~~----~~~--v 301 (374)
.++... ..+..+++.+..++-.. ..+ +++ ..+.+.+|+++.+.++..+... +. .. ... .
T Consensus 1228 ~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~ 1307 (1431)
T KOG1240|consen 1228 VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAG 1307 (1431)
T ss_pred ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccc
Confidence 333332 34557888888865433 223 333 5789999999877665554322 00 00 000 1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeE------------------------------------------------E
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSA------------------------------------------------L 333 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~------------------------------------------------~ 333 (374)
...++..-+..+.+|+.|..||.||...++. .
T Consensus 1308 ~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~ 1387 (1431)
T KOG1240|consen 1308 ISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALREN 1387 (1431)
T ss_pred eeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccc
Confidence 1223333455789999999999999864211 0
Q ss_pred EEe--------cccCCceEEEEEeCC-CCEEEEEeCCCcEEEec
Q 017296 334 AIL--------KYHHATCNAVSFSSD-CKLMASASEDSTVALWE 368 (374)
Q Consensus 334 ~~~--------~~h~~~v~~v~~sp~-~~~las~s~D~~v~~W~ 368 (374)
+.+ ..|...|.++++... ..+|++++.||.|+||.
T Consensus 1388 ~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1388 QKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001 235567888887644 35999999999999995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-15 Score=142.06 Aligned_cols=299 Identities=16% Similarity=0.234 Sum_probs=202.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-eeee-eeeeeceee-eEEeccCCccccceeeeccccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSS-SWVHSAAHG-IVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
-..++.+|.+.|.-+. +-|..++++..++.+.||+..+++ ++.. +..-...+. +.++. .|+-=-|.++.|+++|
T Consensus 106 i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G 182 (910)
T KOG1539|consen 106 IRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQG 182 (910)
T ss_pred EEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCC
Confidence 3456677777776443 468889999999999999987642 2110 111111122 33332 2221236789999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.+.+|++++++... +...+...+. ..+. .---.+++
T Consensus 183 ~lql~Nvrt~K~v~-------~f~~~~s~IT-------------------~ieq------------------sPaLDVVa 218 (910)
T KOG1539|consen 183 RLQLWNVRTGKVVY-------TFQEFFSRIT-------------------AIEQ------------------SPALDVVA 218 (910)
T ss_pred cEEEEEeccCcEEE-------Eeccccccee-------------------Eecc------------------CCcceEEE
Confidence 99999999986421 1110000000 0000 00012577
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.|-.+|+|.+++++.++.+..+.+. .++.. . ..|.+ +|.+.+++|...|.+.+|||+.......
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk~d----------~g~Vt--s-lSFrt---DG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFKQD----------WGRVT--S-LSFRT---DGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEEcc----------cccee--E-EEecc---CCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 8888999999999999998888652 11111 1 12433 4556788999999999999986443333
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC-------------------------eEEEE----------
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG-------------------------SCVIK---------- 291 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~-------------------------~~~~~---------- 291 (374)
....|.+.+....|.+....+++++.|+..++|=++...+ ...+.
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 4457888999999988888899999999999987762111 00000
Q ss_pred --------------------------------------------------------------Ee----------------
Q 017296 292 --------------------------------------------------------------KE---------------- 293 (374)
Q Consensus 292 --------------------------------------------------------------~~---------------- 293 (374)
..
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 00
Q ss_pred -eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe---cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 294 -INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL---KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 294 -~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+.....+++++.++.|.+.+.|...|+|-+|++++|-..+.+ +.|.++|..++...-++.++|++.||.+++|++
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 0001123678999999999999999999999999999777766 589999999999888889999999999999998
Q ss_pred CC
Q 017296 370 YP 371 (374)
Q Consensus 370 ~~ 371 (374)
..
T Consensus 523 ~~ 524 (910)
T KOG1539|consen 523 KK 524 (910)
T ss_pred CC
Confidence 53
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=133.36 Aligned_cols=238 Identities=22% Similarity=0.387 Sum_probs=154.2
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..|..+.|++ ..+.|+.+++||++|++|+....+.. ..+.. . .++ .| .
T Consensus 14 d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~----~--plL--------------~c-~----- 61 (323)
T KOG1036|consen 14 DGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL----KFKHG----A--PLL--------------DC-A----- 61 (323)
T ss_pred hceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh----heecC----C--cee--------------ee-e-----
Confidence 4577788885 34677788899999999998753210 00000 0 000 00 0
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
+.+ ..-+++|+-|+.|+.+|+.+++...-.. +.....|+. +.. ...
T Consensus 62 -------------F~d---~~~~~~G~~dg~vr~~Dln~~~~~~igt-----------h~~~i~ci~---~~~----~~~ 107 (323)
T KOG1036|consen 62 -------------FAD---ESTIVTGGLDGQVRRYDLNTGNEDQIGT-----------HDEGIRCIE---YSY----EVG 107 (323)
T ss_pred -------------ccC---CceEEEeccCceEEEEEecCCcceeecc-----------CCCceEEEE---eec----cCC
Confidence 001 1135678889999999999886432211 111222322 111 122
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.+++|+.|++|++||.+.. .....+. -...|.|+.... ..|+.|..|..+.+||++....... +.+ ..-...++
T Consensus 108 ~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~g--~~LvVg~~~r~v~iyDLRn~~~~~q-~re-S~lkyqtR 181 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVSG--NRLVVGTSDRKVLIYDLRNLDEPFQ-RRE-SSLKYQTR 181 (323)
T ss_pred eEEEcccCccEEEEecccc-ccccccc-cCceEEEEeccC--CEEEEeecCceEEEEEcccccchhh-hcc-ccceeEEE
Confidence 5899999999999999852 2222221 234788888765 4578999999999999975322111 111 11123488
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCC----eEEEEecccCC---------ceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHHA---------TCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~~---------~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++++-|++.-.++++-||+|.+=.+++. +.-..++.|.. +|++++|+|-...||||+.||.|.+||+
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 9999998777888999999988655544 23345666753 6999999999999999999999999999
Q ss_pred CCC
Q 017296 370 YPP 372 (374)
Q Consensus 370 ~~~ 372 (374)
++.
T Consensus 262 ~~r 264 (323)
T KOG1036|consen 262 FNR 264 (323)
T ss_pred cch
Confidence 753
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=138.05 Aligned_cols=300 Identities=19% Similarity=0.201 Sum_probs=187.8
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc------ceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
...-+.+|.+-|++|.|+..+.+|+||+.|..++||+.... +++. +.+|.+...+.+++|.. ....+.||+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~--~N~~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDL--ENRFLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEcc--CCeeEecCC
Confidence 34457899999999999999999999999999999997532 3332 23343334688888876 445788999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.+++|.+-|+++.+.+. +...... ...++.. +..+. .-
T Consensus 125 ~~~~VI~HDiEt~qsi~----V~~~~~~--------------------~~~VY~m----------------~~~P~--DN 162 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY----VANENNN--------------------RGDVYHM----------------DQHPT--DN 162 (609)
T ss_pred CcceeEeeecccceeee----eecccCc--------------------ccceeec----------------ccCCC--Cc
Confidence 99999999998743211 0000000 0000000 00111 12
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++.+.++.|.+||.+..+.-..+.-. ..+ +... ....|.|.. ..++++++..+.+-+||++.+..
T Consensus 163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~------AN~--~~~F--~t~~F~P~~---P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 163 TLIVVTRAKLVSFIDNRDRQNPISLVLP------ANS--GKNF--YTAEFHPET---PALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred eEEEEecCceEEEEeccCCCCCCceeee------cCC--Cccc--eeeeecCCC---ceeEEeccccCCCCceeeccccc
Confidence 4556677899999999876521111100 000 0111 112344432 23678899999999999988654
Q ss_pred ceeeeecC------ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec----CCCCeEEEEECCCCCEE
Q 017296 244 PLTAMKVH------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----ERPGISGTSIRPDSKIA 313 (374)
Q Consensus 244 ~~~~~~~h------~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l 313 (374)
++....+. ...-..+.|++.++++++--...--.+||+-.+. -.+++...+. ....+.+++|-.|- .+
T Consensus 230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R-~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v 307 (609)
T KOG4227|consen 230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR-CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TV 307 (609)
T ss_pred hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc-ceeEeccCCCCcceeeeeeeeeeeecce-ee
Confidence 43322111 1122456678888887765555555667764321 1122211110 01135567787554 48
Q ss_pred EEEeCCCeEEEEEccCC-----------------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 314 ATAGWDRRVRIYNYRKG-----------------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~-----------------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++|+.+=.|.+|.+-.. +.+-+|++|..-++.|.|+|-..+|+|.+-.+.+|||.-
T Consensus 308 ~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 308 ATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 99999999999977321 124578999999999999999999999999999999964
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=142.17 Aligned_cols=143 Identities=18% Similarity=0.258 Sum_probs=114.4
Q ss_pred EecCCcEEEEeccCCCCce-eeee--cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC---eEEEEEeeecCCC
Q 017296 227 GYEDGSILVWDIRNPGIPL-TAMK--VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG---SCVIKKEINLERP 299 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~-~~~~--~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~---~~~~~~~~~~~~~ 299 (374)
.+..|.|.||+++.++..- ..+. .....|+.+.++| +...++.++.||.|+||-+..... .......+..|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 4557899999998775321 1111 1345788888877 445689999999999999864322 1223345677888
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.|+++.|+|- ...|++++.|-+|++||+.+++....+.+|...|..+||||||+.+||.+.||+|++++-
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 8999999994 446889999999999999999988899999999999999999999999999999999864
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=143.14 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee-eeeceeeeEEeccCCccccceeeeccccC
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..+.+.|.||++-|+||+|+.+|.+|+|||+|..+.|||...-+.++.+. +|. ..|.++-|-|.-..++++||+.|.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcc
Confidence 34667899999999999999999999999999999999998766665433 454 468888888876667899999999
Q ss_pred eEEEEecCC
Q 017296 87 TVKCWDIEN 95 (374)
Q Consensus 87 ~vrvwd~~~ 95 (374)
.|+++|+..
T Consensus 118 ~i~lfdl~~ 126 (758)
T KOG1310|consen 118 LIKLFDLDS 126 (758)
T ss_pred eEEEEeccc
Confidence 999999974
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-15 Score=136.41 Aligned_cols=256 Identities=18% Similarity=0.277 Sum_probs=168.8
Q ss_pred CeEEeecCC-CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~-~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..++.||+ +.|..|+|. ++..|+|.+.+|+|.-||+.+++....... .+..+=+++.++ ....++.|+.||.+
T Consensus 60 ~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~--~gg~IWsiai~p--~~~~l~IgcddGvl 134 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS--NGGAIWSIAINP--ENTILAIGCDDGVL 134 (691)
T ss_pred eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecC--CCcceeEEEeCC--ccceEEeecCCceE
Confidence 455677765 789999998 678999999999999999999887665432 223355666665 34678889999977
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..+++..+..... . .+..+ ...+... .+ .....-+++|
T Consensus 135 ~~~s~~p~~I~~~------r------~l~rq--------------------~sRvLsl--------sw--~~~~~~i~~G 172 (691)
T KOG2048|consen 135 YDFSIGPDKITYK------R------SLMRQ--------------------KSRVLSL--------SW--NPTGTKIAGG 172 (691)
T ss_pred EEEecCCceEEEE------e------ecccc--------------------cceEEEE--------Ee--cCCccEEEec
Confidence 7777765432110 0 00000 0000000 00 1112336789
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.|++||+.++.-+--..... .+........+.++. +..+ + .+++|..-|+|++||-.. +..++.+
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~----d~l~k~~~~iVWSv~-~Lrd---~--tI~sgDS~G~V~FWd~~~-gTLiqS~ 241 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQL----DRLSKREPTIVWSVL-FLRD---S--TIASGDSAGTVTFWDSIF-GTLIQSH 241 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecc----cccccCCceEEEEEE-Eeec---C--cEEEecCCceEEEEcccC-cchhhhh
Confidence 999999999999886433111100 011111122333332 2222 2 488999999999999875 5567778
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..|...|.|++..+++..+.+++.|+.|..+...+....+........|...+++++..++ .+++||.|+++.+-
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 8899999999999998999999999999999887654334433444566677888888877 67888888877664
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=158.88 Aligned_cols=249 Identities=19% Similarity=0.341 Sum_probs=170.6
Q ss_pred ceeEEEEeCCCCE----EEEecCCCcEEEEeCcc---cc---eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 20 SVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---HR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 20 ~V~~l~~~~~~~~----l~s~s~D~~v~vWd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
.-++|+|.+.|.. ++.|.+||.|.+||... +. .+.+...|. ..|..+.|.+. .++.|+||+.||.|.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~-q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPF-QGNLLASGADDGEIL 142 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC--Cceeeeecccc-CCceeeccCCCCcEE
Confidence 4478999887654 89999999999999754 22 233344454 34777888774 457999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||++.-+....+. .....+...+ ..++. .-.-++++++
T Consensus 143 iWDlnn~~tP~~~~----------------------~~~~~~eI~~--lsWNr-----------------kvqhILAS~s 181 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPG----------------------SQAPPSEIKC--LSWNR-----------------KVSHILASGS 181 (1049)
T ss_pred EeccCCcCCCCCCC----------------------CCCCcccceE--eccch-----------------hhhHHhhccC
Confidence 99998642211000 0000000001 11110 0012567788
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC---CcEEEEeccCCCCcee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLT 246 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---g~i~iwdl~~~~~~~~ 246 (374)
.++.+.|||++..+.+..+... ..+.+|..+ ...|+ ....++++++| -.|.+||+|....+++
T Consensus 182 ~sg~~~iWDlr~~~pii~ls~~----------~~~~~~S~l-~WhP~---~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 182 PSGRAVIWDLRKKKPIIKLSDT----------PGRMHCSVL-AWHPD---HATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred CCCCceeccccCCCcccccccC----------CCccceeee-eeCCC---CceeeeeecCCCCCceeEeecccccCCchh
Confidence 8889999999998776665421 122333333 34443 33457777766 4699999999888999
Q ss_pred eeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 017296 247 AMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRI 324 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~i 324 (374)
.+++|...|.+|.+.+.. ..++|++.|++|.+|+.++++ . ..++.....++..+.|.|- ...|++++.||+|.|
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--v--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--V--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--E--eeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 999999999999997655 678999999999999987532 2 2334445578999999994 558999999999999
Q ss_pred EEccCC
Q 017296 325 YNYRKG 330 (374)
Q Consensus 325 wd~~~~ 330 (374)
+.+...
T Consensus 324 ~sl~~~ 329 (1049)
T KOG0307|consen 324 YSLQGT 329 (1049)
T ss_pred eeeecC
Confidence 998654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=137.74 Aligned_cols=266 Identities=17% Similarity=0.231 Sum_probs=170.8
Q ss_pred CceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeee--eeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 19 ~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
-.|..++|+.... .+++.+.|..|++|... |+. .+.+ ....+..-.|++... ...++++||..++|++||++.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~-~~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKT-PEVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEeccc-CCC-CccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHH
Confidence 3488999976553 34566788899999853 331 1111 011111112222211 225899999999999999984
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 175 (374)
..+.. .++++... ..+...+ ....++++++..|.|.
T Consensus 111 kl~hr-----------------~lkdh~st-------vt~v~YN--------------------~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 111 KLIHR-----------------FLKDHQST-------VTYVDYN--------------------NTDEYIASVSDGGDII 146 (673)
T ss_pred HHHhh-----------------hccCCcce-------eEEEEec--------------------CCcceeEEeccCCcEE
Confidence 31110 01111100 0011111 1123456677778899
Q ss_pred EEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCe
Q 017296 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (374)
Q Consensus 176 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v 255 (374)
|-.+.+++...++.... +..+ -...|.+.+ +-+|.+++.+|.|.+||.......+.....|..|.
T Consensus 147 ih~~~t~~~tt~f~~~s----------gqsv--Rll~ys~sk---r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~ 211 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDS----------GQSV--RLLRYSPSK---RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC 211 (673)
T ss_pred EEecccCccccceecCC----------CCeE--EEeeccccc---ceeeEeeccCCeEEEEeccCCCcccchhhhccCCc
Confidence 99988887655553210 1111 122333322 22577899999999999965444555667899999
Q ss_pred EEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC-CeEE
Q 017296 256 LCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSAL 333 (374)
Q Consensus 256 ~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-~~~~ 333 (374)
..++|+|. ...+++-+.|..|.+||...... ...+.+. .....++|+|+|.+|+.|...|.|..||++. ..++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQAS----TDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccc----cceeeec-CCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 99999874 45678999999999999864321 1222222 3588999999999999999999999999975 4578
Q ss_pred EEecccCCceEEEEEeCCC
Q 017296 334 AILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 334 ~~~~~h~~~v~~v~~sp~~ 352 (374)
.++.+|...|.+|+|-|..
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 8899999999999998764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-17 Score=143.17 Aligned_cols=239 Identities=17% Similarity=0.248 Sum_probs=166.0
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
..-|+.+.+.|||+.|++|++-.++-|||+....+-........+-.+.+++.++ |.+.++++..||.|+|||+.+..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccce
Confidence 4678899999999999999999999999987543211111111222344555554 77888899999999999997542
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
..+ ...+| .|+
T Consensus 543 ~Vr-------qfqGh---------------------------------------------------------tDG----- 553 (705)
T KOG0639|consen 543 LVR-------QFQGH---------------------------------------------------------TDG----- 553 (705)
T ss_pred eee-------cccCC---------------------------------------------------------CCC-----
Confidence 110 00000 000
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
..|+.+ +.....|-+|.-|++||-||+++... ++.. .....|.+
T Consensus 554 ---------------------------ascIdi-------s~dGtklWTGGlDntvRcWDlregrq-lqqh-dF~SQIfS 597 (705)
T KOG0639|consen 554 ---------------------------ASCIDI-------SKDGTKLWTGGLDNTVRCWDLREGRQ-LQQH-DFSSQIFS 597 (705)
T ss_pred ---------------------------ceeEEe-------cCCCceeecCCCccceeehhhhhhhh-hhhh-hhhhhhee
Confidence 001110 01112356777788889998886432 1111 13567888
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 337 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 337 (374)
+...|.+.+++.|=..+.+.+-...... +..+..|.+-|.++.|.+.|++++|.|.|..+-.|..--|..+...+
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred cccCCCccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 8889999999999899988887664332 23345577889999999999999999999999999876666665544
Q ss_pred ccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 338 YHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
-...|.+..+|.|+++|+|||.|+.-.+|.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3468999999999999999999988888765
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-15 Score=128.41 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=177.9
Q ss_pred eEEEEeCCCCEEEEecCCCcEEEEeCcc-------cceee-e--eeee-eceeeeEEeccC-----Cccccceeeecccc
Q 017296 22 TDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVS-S--SWVH-SAAHGIVSVATG-----PSIGLNKVISQGRD 85 (374)
Q Consensus 22 ~~l~~~~~~~~l~s~s~D~~v~vWd~~~-------~~~~~-~--~~~~-~~~~~~~~~~~~-----~~~~~~~l~s~~~D 85 (374)
..+.|+|||.-|++-++|..+.+|++.. ...+. . ...+ ..+..+..+++- ..++.+.+++.++|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 4578999999999999999999999732 11110 0 0001 011224444432 23456788999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
.-|++||.-+|++... ++.. . +.... ....+. .+.+++.. +
T Consensus 133 ~PIh~wdaftG~lraS---------y~~y--d----h~de~----taAhsL------------------~Fs~DGeq--l 173 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRAS---------YRAY--D----HQDEY----TAAHSL------------------QFSPDGEQ--L 173 (406)
T ss_pred Cceeeeeccccccccc---------hhhh--h----hHHhh----hhheeE------------------EecCCCCe--E
Confidence 9999999998864321 0000 0 00000 000000 12233332 2
Q ss_pred EcccCCCeEEEEec-CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 166 VAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 166 ~~~~~d~~i~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
.+| .++.|+++|+ +.|.-.....-. .....+..-+++...|.|.. ...++.|+-...+-||.-.. ..|
T Consensus 174 faG-ykrcirvFdt~RpGr~c~vy~t~------~~~k~gq~giisc~a~sP~~---~~~~a~gsY~q~~giy~~~~-~~p 242 (406)
T KOG2919|consen 174 FAG-YKRCIRVFDTSRPGRDCPVYTTV------TKGKFGQKGIISCFAFSPMD---SKTLAVGSYGQRVGIYNDDG-RRP 242 (406)
T ss_pred eec-ccceEEEeeccCCCCCCcchhhh------hcccccccceeeeeeccCCC---CcceeeecccceeeeEecCC-CCc
Confidence 334 4679999998 555421111000 00011122233333455432 23577888888888887654 467
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCC-CeEEEE--ECCCCCEEEEEeCCC
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERP-GISGTS--IRPDSKIAATAGWDR 320 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~-~v~~~~--~sp~~~~l~s~~~dg 320 (374)
++.+-+|...|+.+.+.+++..+.+|+. |..|..||++.... .+ ..+..|.. .=..+. +.|++++|++|+.||
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-pv--~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-PV--YALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-hh--hhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 8889999999999999999998888774 78999999974321 11 11111211 111233 468999999999999
Q ss_pred eEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 321 RVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 321 ~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
.|++||+++ ++....+..|...|+.++++|-=.++||+|.
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 999999988 6767778889999999999998778888774
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-13 Score=128.43 Aligned_cols=294 Identities=27% Similarity=0.474 Sum_probs=191.5
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-eeeeeeeeeceeeeEEeccCCccccc-eeeeccc-cCeEE
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGR-DGTVK 89 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~-D~~vr 89 (374)
.+.+|...|..+.|.+.+..++.++.|+.+.+|+...+. .+..+..+.. ..+..+... ..++. .++..+. |+.++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 677999999999999999999999999999999988775 4555444221 123444442 22344 4555444 99999
Q ss_pred EEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 90 CWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 90 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+||... ... ...+.........+ .+.+.+ .+++..+
T Consensus 138 ~~~~~~~~~~----~~~~~~~~~~v~~~--------------------------------------~~~~~~-~~~~~~~ 174 (466)
T COG2319 138 LWDLSTPGKL----IRTLEGHSESVTSL--------------------------------------AFSPDG-KLLASGS 174 (466)
T ss_pred EEEecCCCeE----EEEEecCcccEEEE--------------------------------------EECCCC-CEEEecC
Confidence 999975 211 00000000000000 011112 2333332
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee-e
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-A 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~-~ 247 (374)
..++.+++|++.++..+..+..+ .....++ .+.+ .+...+++++.|+.|++||... ..... .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~---~~~~---~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~ 237 (466)
T COG2319 175 SLDGTIKLWDLRTGKPLSTLAGH----------TDPVSSL---AFSP---DGGLLIASGSSDGTIRLWDLST-GKLLRST 237 (466)
T ss_pred CCCCceEEEEcCCCceEEeeccC----------CCceEEE---EEcC---CcceEEEEecCCCcEEEEECCC-CcEEeee
Confidence 24899999999986655555431 1111111 2222 2222344459999999998873 33444 5
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|.... ...|.+.+..+++++.|+.+++|++..... .... ...|...+.++.|+|++..+++++.|+.+++||.
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 238 LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRT--LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEE--EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 77787775 337777777778999999999999975543 1111 1445677999999999888888999999999999
Q ss_pred cCCeEEEEec--ccCCceEEEEEeCCCCEEEEE-eCCCcEEEecCCCC
Q 017296 328 RKGSALAILK--YHHATCNAVSFSSDCKLMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 328 ~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~~~~ 372 (374)
.......... .|...+..+.|.+++..++.+ ..|+.+++|++...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 8877666655 788889999994343555555 78899999988643
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=154.03 Aligned_cols=151 Identities=24% Similarity=0.342 Sum_probs=127.4
Q ss_pred CceEEEEEe--cCCcEEEEeccCC-----------CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC---
Q 017296 220 GFVNVLAGY--EDGSILVWDIRNP-----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH--- 283 (374)
Q Consensus 220 ~~~~~~~gs--~dg~i~iwdl~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~--- 283 (374)
....+++|+ .||.++||+...- ...+.++..|...|+|+.|.+++.+||+||.|+.|.+|....
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~ 103 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS 103 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC
Confidence 344688888 8999999987421 112445667999999999999999999999999999999762
Q ss_pred -----CCC------eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 284 -----STG------SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 284 -----~~~------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
.++ .+.....+..|...|..++|+|++.++||++.|++|-+||..+++.++++++|...|-.+.|-|-|
T Consensus 104 ~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 104 GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG 183 (942)
T ss_pred cccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence 000 111233456788889999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEecCC
Q 017296 353 KLMASASEDSTVALWELY 370 (374)
Q Consensus 353 ~~las~s~D~~v~~W~~~ 370 (374)
+||||=+.|++|++|+..
T Consensus 184 ky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTS 201 (942)
T ss_pred CeeeeecCCceEEEEEcc
Confidence 999999999999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=142.39 Aligned_cols=287 Identities=18% Similarity=0.232 Sum_probs=160.3
Q ss_pred EEeecCCCceeE--EEEeC---CCCEEEEecCCCcEEEEeCcccc------eeeeeeeeeceeeeEEeccCCccccceee
Q 017296 12 AVLRGHRASVTD--VCFHQ---TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 12 ~~l~gH~~~V~~--l~~~~---~~~~l~s~s~D~~v~vWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.-...|.-++.. ..|++ ..++|+-+.+||.|.++|...-. .+.....|.+ .|..+.+.+ ....|+
T Consensus 41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n--AifDl~wap--ge~~lV 116 (720)
T KOG0321|consen 41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN--AIFDLKWAP--GESLLV 116 (720)
T ss_pred cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc--eeEeeccCC--CceeEE
Confidence 333444445544 56654 35689999999999999975321 1233344543 367777776 567899
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+++.|.++|+||++++++.... ...+|.+.+ . +. .+.+.+
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~-----~~~GH~~Sv----------------------------k--S~-----cf~~~n 156 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGR-----LNLGHTGSV----------------------------K--SE-----CFMPTN 156 (720)
T ss_pred EccCCceeeeeeeccceeecce-----eeccccccc----------------------------c--hh-----hhccCC
Confidence 9999999999999987543210 011111100 0 00 011222
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
..++++|+.|+.|.|||++..... .+.. + +.........- +..... + -..++=|-...
T Consensus 157 -~~vF~tGgRDg~illWD~R~n~~d-~~e~--------~---~~~~~~~~n~~-ptpskp---~-----~kr~~k~kA~s 214 (720)
T KOG0321|consen 157 -PAVFCTGGRDGEILLWDCRCNGVD-ALEE--------F---DNRIYGRHNTA-PTPSKP---L-----KKRIRKWKAAS 214 (720)
T ss_pred -CcceeeccCCCcEEEEEEeccchh-hHHH--------H---hhhhhccccCC-CCCCch---h-----hcccccccccc
Confidence 235778899999999998764310 0000 0 00000000000 000000 0 00111111110
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEE--E--eeecC---CCCeEEEEECCCCCE
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIK--K--EINLE---RPGISGTSIRPDSKI 312 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~--~--~~~~~---~~~v~~~~~sp~~~~ 312 (374)
. .-...|+.+.| .+...++++|. |+.||+||++......... . ....+ ..++.++...-.|.+
T Consensus 215 --~------ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 215 --N------TIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred --C------ceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 0 01123555555 34456888887 9999999997543211110 0 01111 235667777777888
Q ss_pred EEEEeCCCeEEEEEccCC--eEEEEecccCCceEE--EEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 313 AATAGWDRRVRIYNYRKG--SALAILKYHHATCNA--VSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~--v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+.+.|.|++|.+||+..- .+...+.++...-.- -..+||+++|+||+.|....+|.+..|.
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 888888999999999753 233444444432111 2468999999999999999999987664
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=148.80 Aligned_cols=284 Identities=17% Similarity=0.276 Sum_probs=181.2
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+..|.||...|+|..|...|.+++||+.|..||||..++++++....+|.. .+..++.+. ....++++|.|..||+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~--~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSS--NNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccch--hhhhhhhcccCceEEE
Confidence 456789999999999999999999999999999999999999999988874 366555544 2235678999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
|.++.+.... .+.. | .+.++.. .+.+ ..+.+.
T Consensus 259 Wrl~~~~pvs----vLrg---h---------------------------tgavtai--------afsP------~~sss~ 290 (1113)
T KOG0644|consen 259 WRLPDGAPVS----VLRG---H---------------------------TGAVTAI--------AFSP------RASSSD 290 (1113)
T ss_pred EecCCCchHH----HHhc---c---------------------------ccceeee--------ccCc------cccCCC
Confidence 9999874321 0000 0 0000100 0111 125667
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
|+++++||.+ -......+.+. .+.. ..+....+ |. .....+++|+.|+.-+.|.+..- -+
T Consensus 291 dgt~~~wd~r-~~~~~y~prp~-----~~~~--~~~~~s~~-~~----~~~~~f~Tgs~d~ea~n~e~~~l-------~~ 350 (1113)
T KOG0644|consen 291 DGTCRIWDAR-LEPRIYVPRPL-----KFTE--KDLVDSIL-FE----NNGDRFLTGSRDGEARNHEFEQL-------AW 350 (1113)
T ss_pred CCceEecccc-ccccccCCCCC-----Cccc--ccceeeee-cc----ccccccccccCCcccccchhhHh-------hh
Confidence 8999999987 11111111111 1111 11111111 11 11224789999999998876421 12
Q ss_pred CccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcc
Q 017296 251 HLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 251 h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~ 328 (374)
+...+.-+....+. ...+++-.+..+++|++-.+...+. ...|.+.++.+.|+| |.++..+++.||..-|||+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~----l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN----LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhh----hcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 22222222222111 2235666788899998854321221 234566788999999 56667799999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.|.+++.+.-....+..-+||+||..++-...-|.+.|....
T Consensus 427 eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 427 EGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 888776554323355566999999988877777878776553
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-15 Score=130.84 Aligned_cols=251 Identities=15% Similarity=0.230 Sum_probs=158.7
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+.+++|.|....+.+++|..-|+|=+||+.+++-....... ...| +.+..+..
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~---f~~h-----------------s~~Vs~l~----- 241 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL---FTPH-----------------SGPVSGLK----- 241 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE---eccC-----------------CccccceE-----
Confidence 4688999998766578889999999999999743211110000 0000 00011111
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
+.+.+.. .+++.+.||+|++=|++.+.....+. .+.....++...|... ..
T Consensus 242 -------------F~P~n~s-~i~ssSyDGtiR~~D~~~~i~e~v~s-----------~~~d~~~fs~~d~~~e----~~ 292 (498)
T KOG4328|consen 242 -------------FSPANTS-QIYSSSYDGTIRLQDFEGNISEEVLS-----------LDTDNIWFSSLDFSAE----SR 292 (498)
T ss_pred -------------ecCCChh-heeeeccCceeeeeeecchhhHHHhh-----------cCccceeeeeccccCC----Cc
Confidence 1111111 25677889999999998764321111 0001111111122211 11
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEE-EEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCV-IKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~-~~~~~~~~~~~ 300 (374)
.++.|..=|...+||++.++.....+.-|...|..|+++|-..+ ++|+|.|+++++||++.-.++.. +.. .-.|+..
T Consensus 293 ~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~Hrrs 371 (498)
T KOG4328|consen 293 SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRS 371 (498)
T ss_pred cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee-cccccce
Confidence 35666666789999999877656666678889999999886654 58999999999999975444332 111 2236667
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcc----CCeEEEEecccCC------ceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYR----KGSALAILKYHHA------TCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~----~~~~~~~~~~h~~------~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|.++.|||.+..|++.+.|.+|+|||.. ..+++.++. |.. .....+|.||..+++.|-.-.-|-|+|-
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 9999999998889999999999999983 334444444 322 2344689999889998876666666653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-14 Score=126.57 Aligned_cols=278 Identities=9% Similarity=0.157 Sum_probs=155.6
Q ss_pred EEEecCCCcEEEEeCcc-cc--eeeeeeeeeceeeeEEeccCCccccceeeec-cccCeEEEEecCC-CCCCCCCceeee
Q 017296 33 LFAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIEN-GGLSSNPSLTIK 107 (374)
Q Consensus 33 l~s~s~D~~v~vWd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~vrvwd~~~-~~~~~~~~~~~~ 107 (374)
.++...|+.|.+||+.+ ++ .+..+.. ......+++++ +++.|+.+ ..++.|.+|++.. |... .+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~---~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~-----~~~ 74 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV---PGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALT-----FAA 74 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec---CCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceE-----Eee
Confidence 44557899999999964 32 2233221 12234456665 55666544 5688999999963 3210 000
Q ss_pred ecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCcee-E
Q 017296 108 TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC-T 186 (374)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~-~ 186 (374)
... ... .+. . + .+ .++++++.++...++.|.+||+.+...+ .
T Consensus 75 ~~~-------~~~----------~p~--------~-i----------~~-~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 75 ESP-------LPG----------SPT--------H-I----------ST-DHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred eec-------CCC----------Cce--------E-E----------EE-CCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 000 000 000 0 0 01 1234556666666789999999743211 1
Q ss_pred EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce----eeee-cCccCeEEEEEe
Q 017296 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL----TAMK-VHLEPVLCLSID 261 (374)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~----~~~~-~h~~~v~~~~~~ 261 (374)
..... ... .....+ .+.+ .+...+++...++.|.+||+...+... .... ........+.|+
T Consensus 118 ~~~~~-----~~~---~~~~~~---~~~p---~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 118 PIQII-----EGL---EGCHSA---NIDP---DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred ceeec-----cCC---CcccEe---EeCC---CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 11100 000 001111 1222 233345667788999999997532211 0011 112345678999
Q ss_pred cCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecC------CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCCeEE
Q 017296 262 ESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLE------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSAL 333 (374)
Q Consensus 262 ~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~~~~ 333 (374)
|++..++++.. +++|.+|+++..++.......+... ......+.|+|++++++++.. +++|.+|++......
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 99988877665 9999999997543332222222111 112335889999999888754 789999999643211
Q ss_pred EEecccC---CceEEEEEeCCCCEEEEEeC-CCcEEEecCCC
Q 017296 334 AILKYHH---ATCNAVSFSSDCKLMASASE-DSTVALWELYP 371 (374)
Q Consensus 334 ~~~~~h~---~~v~~v~~sp~~~~las~s~-D~~v~~W~~~~ 371 (374)
.++.++. .....++|+|||++|+++.+ +++|.+|+++.
T Consensus 264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 1222221 24567899999998887765 99999998753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=126.20 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=90.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.++++.+||.|+|||.|++..|++.+.+|...|.++.|+|.... ++++|.|..|.||..........
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q------------ 296 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ------------ 296 (370)
T ss_pred EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc------------
Confidence 57889999999999999999999999999999999999886554 47899999999997643211111
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 369 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~ 369 (374)
+.|..|..-.--.....+++ ......+.++..|+..|.+++||.-.. .+||-|-||.|-|=++
T Consensus 297 --i~~~~dese~e~~dseer~k---pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 297 --IEFEDDESESEDEDSEERVK---PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred --cccccccccCcchhhHHhcc---cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11111111000001112232 112234678889999999999998767 5678899999977554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-16 Score=130.33 Aligned_cols=240 Identities=21% Similarity=0.282 Sum_probs=143.8
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecc
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~ 110 (374)
..++++-..|+|+++|..+++.+..+.++......+.+.-+. ..+.+.|++.||+||+||++...... ++..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~-- 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESA----RISW-- 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhh----heec--
Confidence 568888888999999999999888888776554444444332 33678999999999999998753211 0000
Q ss_pred eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEecc
Q 017296 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (374)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~ 190 (374)
.. . ++..+.+...+- ...+..+
T Consensus 113 --------~~------------------~-------------------~~~~f~~ld~nc-----------k~~ii~~-- 134 (376)
T KOG1188|consen 113 --------TQ------------------Q-------------------SGTPFICLDLNC-----------KKNIIAC-- 134 (376)
T ss_pred --------cC------------------C-------------------CCCcceEeeccC-----------cCCeEEe--
Confidence 00 0 000011111110 0000000
Q ss_pred CccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-eecCccCeEEEEEecC-CCceE
Q 017296 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSIDES-CNGGI 268 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~-~~~h~~~v~~~~~~~~-~~~~~ 268 (374)
.. .. -..|-.|.+||+|+..+++.. ...|.+.|+++.|+|+ ...++
T Consensus 135 ------------------Gt-------------E~-~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 135 ------------------GT-------------EL-TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ------------------cc-------------cc-ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence 00 00 012446899999986654433 4569999999999874 45679
Q ss_pred EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEccCCe----------------
Q 017296 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDRRVRIYNYRKGS---------------- 331 (374)
Q Consensus 269 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~v~iwd~~~~~---------------- 331 (374)
|||.||.|.++|++.....-.+...++ +...|..+.|..++ +.|.+-+-+.+..+|+++.+.
T Consensus 183 SGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred eecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 999999999999975421111111111 22345666666554 224445556666777665431
Q ss_pred ---------------------------------------------EEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 332 ---------------------------------------------ALAILKY-HHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 332 ---------------------------------------------~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
....+++ |.+-|.++-|...+..+.||++||.+.
T Consensus 262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence 1112333 445556666666677899999999999
Q ss_pred EecC
Q 017296 366 LWEL 369 (374)
Q Consensus 366 ~W~~ 369 (374)
+|..
T Consensus 342 ~Wk~ 345 (376)
T KOG1188|consen 342 AWKV 345 (376)
T ss_pred EEec
Confidence 9984
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=136.71 Aligned_cols=308 Identities=18% Similarity=0.208 Sum_probs=198.3
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee-eeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+...|.+|.+.|+.|.|+..|.+|+|||.|..|.+||...++....+. +|. ..+....|-|.-+.+.+++.+.||++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~--~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC--NNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc--cchhhhhccCCCCCcCceeccccCce
Confidence 456789999999999999999999999999999999998887665543 332 23444446555566789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+=.+....+...+ ..+..+..+..+ ...+ + +..+-+.++
T Consensus 212 r~s~i~~t~~~e~t-~rl~~h~g~vhk--------------------lav~------------------p-~sp~~f~S~ 251 (559)
T KOG1334|consen 212 RVSEILETGYVENT-KRLAPHEGPVHK--------------------LAVE------------------P-DSPKPFLSC 251 (559)
T ss_pred eeeeeccccceecc-eecccccCccce--------------------eeec------------------C-CCCCccccc
Confidence 99887543211000 000000000000 0011 1 112335667
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-----
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----- 243 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~----- 243 (374)
+.|+.+.=.|++++.....+..... ......+-..+++. | .+...+++|..|..+++||.+.-..
T Consensus 252 geD~~v~~~Dlr~~~pa~~~~cr~~----~~~~~v~L~~Ia~~---P---~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 252 GEDAVVFHIDLRQDVPAEKFVCREA----DEKERVGLYTIAVD---P---RNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred ccccceeeeeeccCCccceeeeecc----CCccceeeeeEecC---C---CCccccccCChhhhhhhhcccchhhccccc
Confidence 7788888889888754333321100 00000111222221 1 2223588899999999999864211
Q ss_pred ceeeee------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC------e---EEEEEeeecCC--CCeEEEE-
Q 017296 244 PLTAMK------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG------S---CVIKKEINLER--PGISGTS- 305 (374)
Q Consensus 244 ~~~~~~------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~------~---~~~~~~~~~~~--~~v~~~~- 305 (374)
++..+. ...-.|+|+.++.++.-++++=.|-.|.|++-+...+ . ......++.|+ ..|..+-
T Consensus 322 ~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 322 VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF 401 (559)
T ss_pred hhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee
Confidence 111111 1223689999976655567777788899986543333 1 11111133443 2355564
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|-|...|++||+.=|.|.||+..+++.+..+.+....|+||.=+|--..|||++-|.-||||.-
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 5799999999999999999999999988878776679999999998889999999999999975
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-14 Score=120.53 Aligned_cols=298 Identities=15% Similarity=0.215 Sum_probs=184.2
Q ss_pred EEeecCCCceeEEEEeC-----CCCEEEEecCCCcEEEEeCcccc---eeeeeeeeeceeeeEEeccCCcc--ccceeee
Q 017296 12 AVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSI--GLNKVIS 81 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~-----~~~~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s 81 (374)
...++|..+|..++|++ +...++|++. ..+-+++....- .+..............++++... ..-.++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999984 2345666664 567777754322 22222111122334445444321 1236778
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
||.-|.||+.|+.++++... + ..|..++. + ..+.+.++
T Consensus 111 ~G~~GvIrVid~~~~~~~~~--~-----~ghG~sIN------------------------e-----------ik~~p~~~ 148 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKN--Y-----RGHGGSIN------------------------E-----------IKFHPDRP 148 (385)
T ss_pred ecceeEEEEEecchhhhccc--e-----eccCccch------------------------h-----------hhcCCCCC
Confidence 88999999999988754210 0 01110000 0 01122333
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
. ++++++.|..||+|++.+..++.-+.+-+ ++ .... +++ .|.+ ....+++++-|.+|++|++..+
T Consensus 149 q-lvls~SkD~svRlwnI~~~~Cv~VfGG~e-----gH--rdeV--LSv-D~~~----~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 149 Q-LVLSASKDHSVRLWNIQTDVCVAVFGGVE-----GH--RDEV--LSV-DFSL----DGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred c-EEEEecCCceEEEEeccCCeEEEEecccc-----cc--cCcE--EEE-EEcC----CCCeeeccCCcceEEEEecChh
Confidence 3 56778889999999999999988775432 11 1222 222 2322 2236999999999999999632
Q ss_pred CC-----------------ce----------eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC----------C
Q 017296 242 GI-----------------PL----------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH----------S 284 (374)
Q Consensus 242 ~~-----------------~~----------~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~----------~ 284 (374)
.. ++ .+-.-|..+|.|+.|-+ ..+++-|.++.|..|.... +
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~ 291 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPP 291 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCC
Confidence 10 00 01123677777777765 3568999999999997621 1
Q ss_pred CCeEEEEEeeecCCCCeEEE--EECCCCCEEEEEeCCCeEEEEEccCCeE--EEEeccc--CCceEEEEEeCCCCEEEEE
Q 017296 285 TGSCVIKKEINLERPGISGT--SIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYH--HATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 285 ~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~h--~~~v~~v~~sp~~~~las~ 358 (374)
........+++.....++-+ +|.|-+++||.|...|+|.+||++..++ ..++..+ ...|...+|+-||..|+..
T Consensus 292 es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 292 ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence 11122233455555455555 5567788999999999999999976554 2334322 2467888999999999999
Q ss_pred eCCCcEEEecC
Q 017296 359 SEDSTVALWEL 369 (374)
Q Consensus 359 s~D~~v~~W~~ 369 (374)
..|++|--||.
T Consensus 372 cdd~~Vwrwdr 382 (385)
T KOG1034|consen 372 CDDGTVWRWDR 382 (385)
T ss_pred eCCCcEEEEEe
Confidence 99999988885
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=134.13 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=168.5
Q ss_pred CCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccce--eeeee--eeeceeeeEEeccCCccccceeeec
Q 017296 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VSSSW--VHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
..|..++. -...|+|++|+| +..+|+.|..+|.|.+||+..+.. ...+. .|.+...++.+.+-......-++|+
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 44554544 578899999998 567899999999999999876653 22222 2333344666666554343568999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.||.|..|+++--. .|.... ..+... +
T Consensus 312 ssDG~i~~W~~~~l~---~P~e~~------------------------------~~~~~~-------------------~ 339 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLS---LPVEGL------------------------------LLESKK-------------------H 339 (555)
T ss_pred ecCCcEeeeeccccc---cchhhc------------------------------cccccc-------------------c
Confidence 999999999875311 110000 000000 0
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEE---ecc
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW---DIR 239 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iw---dl~ 239 (374)
-+ -..| .........|.+. ....++.|+++|.|.-= +++
T Consensus 340 ----~~-----~~~~--------------------------~~~~~t~~~F~~~---~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 340 ----KG-----QQSS--------------------------KAVGATSLKFEPT---DPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred ----cc-----cccc--------------------------cccceeeEeeccC---CCceEEEEcCCcEEEEEeccCCc
Confidence 00 0000 0000011122222 12258889999988772 232
Q ss_pred CCC----CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEE
Q 017296 240 NPG----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAA 314 (374)
Q Consensus 240 ~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~ 314 (374)
... ..+..+..|..+|+++.++|-..-+...+.|-++++|.....+. .++ ....+...+.+++|||... .++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~-Pl~--~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS-PLL--SLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC-cch--hhhhccceeeeeEEcCcCceEEE
Confidence 222 22345567889999999988655555555599999998752221 111 1222334589999999754 578
Q ss_pred EEeCCCeEEEEEccCC--eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 315 TAGWDRRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++..||.+.+||+... ++....+-+......+.|+++|+.|+.|...|++.+|++.+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8888999999999643 44544544556677788999999999999999999999854
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=146.57 Aligned_cols=292 Identities=21% Similarity=0.285 Sum_probs=182.8
Q ss_pred EEEEeCCCC-EEEEe----------cCCCcEEEEeCcccce---eeeeeeeeceeeeEEeccCCccccc--eeeeccccC
Q 017296 23 DVCFHQTKP-ILFAG----------TTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLN--KVISQGRDG 86 (374)
Q Consensus 23 ~l~~~~~~~-~l~s~----------s~D~~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~D~ 86 (374)
.+||+|.+. +|++| |.+.++.+|.+..... +.....+....+...++|+...++. .++.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 368888875 34433 3455667776532111 1111112333567778887654322 477888999
Q ss_pred eEEEEecCCCCCCCCCce-eeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 87 TVKCWDIENGGLSSNPSL-TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
.|-+||...= ...... .+....-| . ..+... ++.. .+.-++
T Consensus 91 ~I~ly~p~~~--~~~~~~~~la~~~~h----------~---------G~V~gL----------------DfN~-~q~nlL 132 (1049)
T KOG0307|consen 91 NIVLYDPASI--IANASEEVLATKSKH----------T---------GPVLGL----------------DFNP-FQGNLL 132 (1049)
T ss_pred ceEEecchhh--ccCcchHHHhhhccc----------C---------Cceeee----------------eccc-cCCcee
Confidence 9999998641 000000 00000000 0 000000 1111 123468
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++|..|+.|.|||+...+.-... ++.. ......|++ .+ . .....|++++.+|.+-|||+|.. .++
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~------~~~~--~~~eI~~ls---WN--r-kvqhILAS~s~sg~~~iWDlr~~-~pi 197 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTP------GSQA--PPSEIKCLS---WN--R-KVSHILASGSPSGRAVIWDLRKK-KPI 197 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCC------CCCC--CcccceEec---cc--h-hhhHHhhccCCCCCceeccccCC-Ccc
Confidence 89999999999999864321111 0000 111111111 10 0 11114778999999999999974 455
Q ss_pred eeeecCcc--CeEEEEEecCCC-ceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEEEeC
Q 017296 246 TAMKVHLE--PVLCLSIDESCN-GGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGW 318 (374)
Q Consensus 246 ~~~~~h~~--~v~~~~~~~~~~-~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~ 318 (374)
..+..+.. .+..+.++|+.. .+++++.|. .|.+||++.-+. -.+++..|..+|.++.|++.+ .+++|.+.
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchhhhcccC
Confidence 55655554 366788888754 456666654 799999875321 123456788899999999865 88999999
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
|++|-.|+.++++.+..+....+.+..+.|+|... .++.++-||.|.|+++.
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 99999999999999999988788999999999877 78889999999999874
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=136.16 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=133.0
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc------cc---e-eeeeeeeeceeeeEEeccCCccccce
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HR---T-VSSSWVHSAAHGIVSVATGPSIGLNK 78 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
+|+.+|++|.++|.|+++++.+..++||+.||+|+.|++.. .. . ...+.||... +-.++++... .+
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~~~--~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSSTK--DR 410 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecccc--cc
Confidence 69999999999999999999999999999999999996531 11 1 1245566543 4456666533 56
Q ss_pred eeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 79 l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
|++++.|||+|.|+........ +.........-.+.+.+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~---f~~~~e~g~Plsvd~~ss~------------------------------------ 451 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCT---FGEPKEHGYPLSVDRTSSR------------------------------------ 451 (577)
T ss_pred eeeecCCceEEeeccCCcCccc---cCCccccCCcceEeeccch------------------------------------
Confidence 9999999999999997643200 0000000000000000000
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
. ...++....+...+.|++....+..+......+.... +... .+ . . ..+....+++..|+.|+++|.
T Consensus 452 --~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~-~~in-~v-----V--s-~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 452 --P-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY-PQIN-KV-----V--S-HPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred --h-HhhhhhcccccccchhhhhhhheeeccccCCCccccc-Cccc-eE-----E--e-cCCCCeeEecccCCceecccc
Confidence 0 0011111112222333333333333322111111000 0000 00 0 1 112246788999999999998
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~ 284 (374)
.. +.++.....|...++++++++++.++++++.|+.+++|.++..
T Consensus 519 ~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 519 KT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 76 4567777889999999999999999999999999999998654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=126.51 Aligned_cols=254 Identities=12% Similarity=0.200 Sum_probs=163.0
Q ss_pred CeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
.++.++=-..+|.+.+|.|+|. .+++++.-..+..||+++.+. +....++. ...+..+..++ +++.++..|..|
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVSh--d~~fia~~G~~G 325 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSH--DSNFIAIAGNNG 325 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cchhheeEecC--CCCeEEEcccCc
Confidence 4445555578999999999998 899999999999999988763 22222222 11233334444 667899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-|.+-...+++.+..-++......+ .+..++ +.+++
T Consensus 326 ~I~lLhakT~eli~s~KieG~v~~~-------------------------------------------~fsSds-k~l~~ 361 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSFKIEGVVSDF-------------------------------------------TFSSDS-KELLA 361 (514)
T ss_pred eEEeehhhhhhhhheeeeccEEeeE-------------------------------------------EEecCC-cEEEE
Confidence 9999888877543211100000000 011223 33344
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-----
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----- 241 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~----- 241 (374)
++ .++.|.+||+++..++.......+. .+..+|. +.+..++++||+.|-|-|||..+.
T Consensus 362 ~~-~~GeV~v~nl~~~~~~~rf~D~G~v-------~gts~~~---------S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 362 SG-GTGEVYVWNLRQNSCLHRFVDDGSV-------HGTSLCI---------SLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred Ec-CCceEEEEecCCcceEEEEeecCcc-------ceeeeee---------cCCCceEEeccCcceEEEeccchhhccCC
Confidence 44 4579999999998777666432110 1111221 123337999999999999997431
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
..|+.++.--+..|+.|.|+++...++.+| .++.+||--+..-+ ....-+..+..-..+++++|||.+.+||.|..+
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 245555555677899999998887776555 57788886543211 000111222333569999999999999999999
Q ss_pred CeEEEEEcc
Q 017296 320 RRVRIYNYR 328 (374)
Q Consensus 320 g~v~iwd~~ 328 (374)
|+|.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-12 Score=117.96 Aligned_cols=289 Identities=27% Similarity=0.470 Sum_probs=191.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecC-CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccc-eeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~ 86 (374)
.....+.+|...|.+++|++++..+++++. |+.+++|+...+..+..+..|.. .+.++.+.+ ++. .+++++.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~~~~~~~d~ 221 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSP--DGGLLIASGSSDG 221 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcC--CcceEEEEecCCC
Confidence 567789999999999999999999999886 99999999988777777666543 467777775 444 555669999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++++||...+..... ....|... . . . .+.+.+ . +++
T Consensus 222 ~i~~wd~~~~~~~~~------~~~~~~~~--------------------~-~------~---------~~~~~~-~-~~~ 257 (466)
T COG2319 222 TIRLWDLSTGKLLRS------TLSGHSDS--------------------V-V------S---------SFSPDG-S-LLA 257 (466)
T ss_pred cEEEEECCCCcEEee------ecCCCCcc--------------------e-e------E---------eECCCC-C-EEE
Confidence 999998764421100 00000000 0 0 0 011222 2 344
Q ss_pred cccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++..|+.+++||+..... +..+.. + .....+. .+.+ .. ..+++++.|+.+++||++.... .
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~--------~--~~~v~~~---~~~~---~~-~~~~~~~~d~~~~~~~~~~~~~-~ 319 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSG--------H--SSSVLSV---AFSP---DG-KLLASGSSDGTVRLWDLETGKL-L 319 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEec--------C--CccEEEE---EECC---CC-CEEEEeeCCCcEEEEEcCCCce-E
Confidence 778889999999987664 333311 1 0111111 2333 12 2456688889999999876432 2
Q ss_pred eee--ecCccCeEEEEEecCC-CceEEE-ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE-EeCCC
Q 017296 246 TAM--KVHLEPVLCLSIDESC-NGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT-AGWDR 320 (374)
Q Consensus 246 ~~~--~~h~~~v~~~~~~~~~-~~~~s~-s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg 320 (374)
... ..|...+..+.+ ... ..++.+ ..|+.+.+|++.... .. ...... ..+..+.+++ ...+.+ +..++
T Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 320 SSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK--PL--KTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred EEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc--ee--EEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence 233 367778888888 432 344444 688999999987543 11 111111 1277888988 544444 68899
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+.+|+............+...+....+++++..+++++.+.++++|+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 99999998887776665443788889999999999999999999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-14 Score=132.76 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=151.7
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
|...|.+++- ...+|++|+.+++|.++...+++.-..+.-.. ..+..++++. +++.++.||.|-.|++-++...
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--lp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT--LPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeee--ccceEEEEec--CCcEEEeecCceeEEEEecccc
Confidence 8888888776 45599999999999999988776422222122 2356666665 5689999999999999998754
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
... ...+.+... ..+.... ++ ..++++.+-||+|++
T Consensus 129 s~~----~~lrgh~ap--------------------Vl~l~~~-------------------p~-~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 129 SQE----KVLRGHDAP--------------------VLQLSYD-------------------PK-GNFLAVSSCDGKVQI 164 (933)
T ss_pred chh----eeecccCCc--------------------eeeeeEc-------------------CC-CCEEEEEecCceEEE
Confidence 211 011000000 0000011 11 123444455677777
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeE
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~ 256 (374)
||+.++.+..++..- .+-.+.. -...+.
T Consensus 165 w~~~~~~~~~tl~~v-----------------------------------------~k~n~~~-----------~s~i~~ 192 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGV-----------------------------------------DKDNEFI-----------LSRICT 192 (933)
T ss_pred EEcccchhhhhcccC-----------------------------------------Ccccccc-----------ccceee
Confidence 776655432222100 0000000 034556
Q ss_pred EEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 257 CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 257 ~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
.++|+|++..++..+.|+.|++|+.+.......++ .+.+...+..++|+|+|+|||+++.||.|.|||+++.+
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----- 265 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE----- 265 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeec--ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-----
Confidence 68899998889999999999999887554333332 23344458889999999999999999999999998722
Q ss_pred cccC--CceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 337 KYHH--ATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 337 ~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.|. ..|.+++|.|+...|-.-.+-|+..+|
T Consensus 266 -~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 266 -RHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred -hccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 243 589999999988765433334444333
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=120.91 Aligned_cols=192 Identities=17% Similarity=0.325 Sum_probs=134.3
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.++++-.++.|+++|..+++.+..+.... +....+ .|.... ....+.+++.||+||+||+|....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~--------~~~N~v-----rf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPP--------ATTNGV-----RFISCD--SPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCC--------Ccccce-----EEecCC--CCCeeEEeccCCeEEEEEeecchh
Confidence 35566667899999999988777765431 111111 232221 222588999999999999987542
Q ss_pred -ceeeeecCc-cCeEEEEEecCCCceEEEe----cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEE
Q 017296 244 -PLTAMKVHL-EPVLCLSIDESCNGGISGG----ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATA 316 (374)
Q Consensus 244 -~~~~~~~h~-~~v~~~~~~~~~~~~~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~ 316 (374)
.+.....+. .+..|+...-+...++.|. .|-.+.+||++..+ +.+..-...|.+.|+.+.|+| +..+|+||
T Consensus 107 ~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 107 SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 344445554 5677776654555555553 47899999997543 212223456788899999999 57789999
Q ss_pred eCCCeEEEEEccCCe---E-EEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecCCCCC
Q 017296 317 GWDRRVRIYNYRKGS---A-LAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~---~-~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~~~~~ 373 (374)
+.||.|.+||++... . +.++ .|...|..+.|..++ +.|..-+...+..+|++.+.+
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999999996542 2 3333 477889999999887 468888999999999997653
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-13 Score=116.95 Aligned_cols=279 Identities=15% Similarity=0.205 Sum_probs=173.6
Q ss_pred CCceeEEEEeCCC--CEEEEecCCCcEEEEeCcccceeeee----eeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 18 RASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 18 ~~~V~~l~~~~~~--~~l~s~s~D~~v~vWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
...|..++|..++ ..|+..+.|..+......+....... ..+.....+..+.... ..|+++-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEEE
Confidence 4667888887655 34555557777777666554433222 1121222233333322 368888899999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
....+-.-..+...+.....- +... -.+...+++++|+..
T Consensus 131 ~~k~~d~hss~l~~la~g~g~----------------------~~~r------------------~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGL----------------------YDVR------------------QTDTDPYIVATGGKE 170 (412)
T ss_pred eccCCccccccceeeecCCce----------------------eeec------------------cCCCCCceEecCchh
Confidence 998764322222111111000 0000 012234566667766
Q ss_pred --CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 172 --SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 172 --~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
+.+++||++..+.+....... ....+. ......+. ..|.+... ...+++++.-++||+||.+.+..|+..+.
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvp-nD~L~L--rVPvW~td-i~Fl~g~~--~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVP-NDRLGL--RVPVWITD-IRFLEGSP--NYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred cccceeeeecccceeeeeccCCC-Cccccc--eeeeeecc-ceecCCCC--CceEEEEecceeEEEecCcccCcceeEec
Confidence 789999999886554332110 000110 01111111 12443221 23589999999999999998888898888
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
.-..++.++...|+++.+++|..-+.+..+|++... +....++.....++++..+|+.+++|++|.|+.|||+|+++
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 889999999999999999999999999999986431 22222444456799999999999999999999999999988
Q ss_pred CeEEEEecccCCceEEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp 350 (374)
.+.+... .-....+++-+.+
T Consensus 322 rkll~kv-YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 322 RKLLHKV-YVKSRLTFILLRD 341 (412)
T ss_pred chhhhhh-hhhccccEEEecC
Confidence 5554321 1233455666644
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=116.04 Aligned_cols=191 Identities=17% Similarity=0.304 Sum_probs=128.8
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++++.+.-|++||..+|+.-..... +....+.+......|.++ |. .|++|. ...|++||+..++.
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~--------ydh~de~taAhsL~Fs~D---Ge-qlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRA--------YDHQDEYTAAHSLQFSPD---GE-QLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred eeeeccccCceeeeeccccccccchhh--------hhhHHhhhhheeEEecCC---CC-eEeecc-cceEEEeeccCCCC
Confidence 455667789999999999985444321 112122221122245554 32 355554 67999999944442
Q ss_pred --ceeeeecC-----ccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 244 --PLTAMKVH-----LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 --~~~~~~~h-----~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
+..+...+ ..-|.|++|+|... .++.|+...++-|+.-+....- ..+..|..+|+-++|.++|..+.+
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eeecccCCCeeeEEeccCcCeecc
Confidence 22221122 45688899987543 6788888888888865443222 223467889999999999999998
Q ss_pred EeC-CCeEEEEEccCC-eEEEEecccCC-ceEEEE--EeCCCCEEEEEeCCCcEEEecCCC
Q 017296 316 AGW-DRRVRIYNYRKG-SALAILKYHHA-TCNAVS--FSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 316 ~~~-dg~v~iwd~~~~-~~~~~~~~h~~-~v~~v~--~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
|.. |-+|..||++.. .++..|..|.. .--.|- ..|++++||+|+.||.|++||+..
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 886 778999999754 55667777875 333344 468999999999999999999965
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=119.13 Aligned_cols=218 Identities=19% Similarity=0.310 Sum_probs=131.7
Q ss_pred CCCCCCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCccc-------ceeeeeeeeeceeeeEEeccCCccc
Q 017296 4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG 75 (374)
Q Consensus 4 ~~~~~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (374)
.....+..-.+.||+++|..++|+| ++..++|||+|.+|+||+...+ +++..+.+|... +-.+.+.+. .
T Consensus 67 ~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr--Vg~V~wHPt-A 143 (472)
T KOG0303|consen 67 TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR--VGLVQWHPT-A 143 (472)
T ss_pred ccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee--EEEEeeccc-c
Confidence 3344455556789999999999998 4578999999999999997543 345567778654 444555554 3
Q ss_pred cceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCC
Q 017296 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155 (374)
Q Consensus 76 ~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (374)
.+.|+|+|.|.+|.+||+.+|+.. +.+. |. ..++.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeal----i~l~----hp-------------------d~i~S~s---------------- 180 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEAL----ITLD----HP-------------------DMVYSMS---------------- 180 (472)
T ss_pred hhhHhhccCCceEEEEeccCCcee----eecC----CC-------------------CeEEEEE----------------
Confidence 488999999999999999998531 1110 10 0000000
Q ss_pred CCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEE---ecCCc
Q 017296 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGS 232 (374)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---s~dg~ 232 (374)
+..++ . ++++...|+.|||||.++++.+.....+.... ..+. .|..+ +. .+-+| ..+.+
T Consensus 181 fn~dG-s-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k------~~Ra------ifl~~---g~-i~tTGfsr~seRq 242 (472)
T KOG0303|consen 181 FNRDG-S-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK------PARA------IFLAS---GK-IFTTGFSRMSERQ 242 (472)
T ss_pred eccCC-c-eeeeecccceeEEEcCCCCcEeeecccccCCC------ccee------EEecc---Cc-eeeeccccccccc
Confidence 11111 2 34566678999999999999776653321110 0010 12111 11 12223 45789
Q ss_pred EEEEeccCCCCceeeeecCcc-CeEEEEEecCCCce-EEEecCCeEEEEEcCCCC
Q 017296 233 ILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGG-ISGGADQKIVLYNLDHST 285 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~ 285 (374)
+-+||..+-..++....-.+. .|.--.+|++-..+ +.|-.|+.||-|.+....
T Consensus 243 ~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 243 IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 999998654444322222233 33322336654444 456679999999986543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-13 Score=124.10 Aligned_cols=273 Identities=15% Similarity=0.208 Sum_probs=171.5
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~ 99 (374)
.|..++|-|||..|+.+. |..+.++|...|..+.++++|.. .+.+++++. ++.+++||+.|+.|.+|...-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKD--tVycVAys~--dGkrFASG~aDK~VI~W~~klEG-- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKD--TVYCVAYAK--DGKRFASGSADKSVIIWTSKLEG-- 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccc--eEEEEEEcc--CCceeccCCCceeEEEecccccc--
Confidence 899999999999877765 46799999999999999999864 478888877 77899999999999999975321
Q ss_pred CCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEec
Q 017296 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~ 179 (374)
.++... .. ...|..+++-.. .+++++- +.--+|..
T Consensus 87 -----~LkYSH--~D-----------------~IQCMsFNP~~h--------------------~LasCsL-sdFglWS~ 121 (1081)
T KOG1538|consen 87 -----ILKYSH--ND-----------------AIQCMSFNPITH--------------------QLASCSL-SDFGLWSP 121 (1081)
T ss_pred -----eeeecc--CC-----------------eeeEeecCchHH--------------------Hhhhcch-hhccccCh
Confidence 111110 00 011111211100 0111111 12334543
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-CCCceeeeecCccCeEEE
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCL 258 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~-~~~~~~~~~~h~~~v~~~ 258 (374)
+.... .+. ....+ +... .. + .+..+++.|..||+|.+=+-.. +...+..-.|..++|.++
T Consensus 122 ~qK~V-~K~-----------kss~R--~~~C-sW-t---nDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 122 EQKSV-SKH-----------KSSSR--IICC-SW-T---NDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred hhhhH-Hhh-----------hhhee--EEEe-ee-c---CCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEE
Confidence 32210 000 00011 1111 11 1 1234688899999999875321 112233334578899999
Q ss_pred EEecCCC-----ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 259 SIDESCN-----GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 259 ~~~~~~~-----~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
+++|... .++...-..++.++.+.+ ++. .++.. -.-.-.++++-|+|.|++.||.|+..++|. ++|-.+
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---~~I-gk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrL 256 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLSG---KQI-GKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRL 256 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEecc---eee-ccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEE
Confidence 9976432 123333344555555432 111 11111 111245678889999999999999999995 478888
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 334 AILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 334 ~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.++......|++|+..|+++.++-|..||||--+++
T Consensus 257 GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 257 GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 888777789999999999999999999999998876
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=115.91 Aligned_cols=264 Identities=17% Similarity=0.222 Sum_probs=158.5
Q ss_pred cCCCceeEEEEeC---C-CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 16 GHRASVTDVCFHQ---T-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 16 gH~~~V~~l~~~~---~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
.|...-+-++|.= + ..+|+.|+.-|.|+|-|..++++...+.+|.. .+..+-+.|. ..++++|+|.|.+||+|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~--sINeik~~p~-~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG--SINEIKFHPD-RPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCc--cchhhhcCCC-CCcEEEEecCCceEEEE
Confidence 3666677777752 2 45789999999999999999998888888864 4777778774 34789999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
++++..+.. .+.....|- .++..+ ++..++ . .+++++.|
T Consensus 164 nI~~~~Cv~----VfGG~egHr---------------------------deVLSv--------D~~~~g-d-~i~ScGmD 202 (385)
T KOG1034|consen 164 NIQTDVCVA----VFGGVEGHR---------------------------DEVLSV--------DFSLDG-D-RIASCGMD 202 (385)
T ss_pred eccCCeEEE----Eeccccccc---------------------------CcEEEE--------EEcCCC-C-eeeccCCc
Confidence 999864311 000000000 001110 121222 2 46677789
Q ss_pred CeEEEEecCCCceeEEeccC----ccCCCCCcCCCCCcceeEEEee-ecCCCCC--------ceEEEEEecCCcEEEEec
Q 017296 172 SEVEIWDLNTAERCTRLHQN----SCGGSPNFSSKGRGMCMAVQAY-LPSKSQG--------FVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~gs~dg~i~iwdl 238 (374)
..+++|++...+.-..+... .......|......+. .| ..+.+.+ ...+++=|-++.|..|..
T Consensus 203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp----~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP----DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKP 278 (385)
T ss_pred ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc----cccccccccchHHHHHHHhhheeecccCceEEEEec
Confidence 99999999854321111100 0000000100000000 00 0000000 124778788889999987
Q ss_pred cCCCC-------------ceeeeecCccCeEEEEE--ecCCCceEEEecCCeEEEEEcCCCCC-eEEEEEeeecCCCCeE
Q 017296 239 RNPGI-------------PLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTG-SCVIKKEINLERPGIS 302 (374)
Q Consensus 239 ~~~~~-------------~~~~~~~h~~~v~~~~~--~~~~~~~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~v~ 302 (374)
-+-.. .+..+....-.|..+.| |+....++.|.+.|.+.+||++.... ++.. .........|+
T Consensus 279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt-l~~s~~~~tVR 357 (385)
T KOG1034|consen 279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT-LTHSKSGSTVR 357 (385)
T ss_pred chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce-EEeccccceee
Confidence 11110 12223333334555544 78788889999999999999976443 2211 11112234688
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..+||.|+.+|+.-+.|++|..||..
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999999999999974
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=122.90 Aligned_cols=70 Identities=29% Similarity=0.391 Sum_probs=63.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.++++++|+||+++|.|+.||.|.|++..+.+.++-. +.|...|+.+.|+||.+++++.|.|....+-.+
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 6899999999999999999999999999988877644 579999999999999999999999999888765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-14 Score=134.05 Aligned_cols=256 Identities=17% Similarity=0.245 Sum_probs=149.6
Q ss_pred CCceeEEEEeC--CCCEEEEecCCCcEEEEeCccc--c--eeee----eeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 18 RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--R--TVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 18 ~~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~--~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
...|+.+++-+ |..+|++|+.||.||||+-... + .+.+ +.++........+.++......+|+++|.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 36788899854 4578999999999999985322 1 1211 11111111111122222222236777776889
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
||+||...-.+.. ++.. .. ....... ...... .-++++
T Consensus 1189 IRIWDa~~E~~~~---------diP~-----~s--~t~vTaL-------------------------S~~~~~-gn~i~A 1226 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVA---------DIPY-----GS--STLVTAL-------------------------SADLVH-GNIIAA 1226 (1387)
T ss_pred EEEEecccceeEe---------eccc-----CC--Cccceee-------------------------cccccC-CceEEE
Confidence 9999997532110 0000 00 0000000 000011 236788
Q ss_pred ccCCCeEEEEecCCCce--eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-CCc
Q 017296 168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP 244 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-~~~ 244 (374)
|-.||.|++||.+.... ...... .+......+-..++ ..|...+++|+.||.|++||+|.+ ...
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R-------~h~~~~~Iv~~slq------~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYR-------EHNDVEPIVHLSLQ------RQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred eecCCceEEeecccCCccccceeec-------ccCCcccceeEEee------cCCCcceeeeccCCeEEEEecccCcccc
Confidence 99999999999887542 222221 12222222222222 124446999999999999999973 222
Q ss_pred eeeeecCc---cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE---eeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 245 LTAMKVHL---EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK---EINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 245 ~~~~~~h~---~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
..+...|- ..++++.+++....+|+|+. +.|++|++.+..- ..++. .+......+.+++|||-.-++|+|..
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 22233332 35999999998888899998 9999999865321 11111 11222245789999999888999999
Q ss_pred CCeEEEEEccCC
Q 017296 319 DRRVRIYNYRKG 330 (374)
Q Consensus 319 dg~v~iwd~~~~ 330 (374)
|.+|.||....+
T Consensus 1372 Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKP 1383 (1387)
T ss_pred CceEEEeecCCc
Confidence 999999977554
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-13 Score=108.32 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=97.5
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--c---C-
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--L---E- 297 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--~---~- 297 (374)
++.+..|+.+.-||+++ +.....+++|++.|.++.--.....+++|+.||++|+||+++.....++....+ . +
T Consensus 129 i~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 55566899999999987 445667999999999998844445689999999999999975433222211100 0 0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...|.+ +.-+..+|++|+ -....+|+++..++..++. -++.|..+.| +.+.+.++++...|.-|.+
T Consensus 208 g~wiga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 208 GKWIGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDF--VDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEE--EeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeee--ecceEEEeccccceeeeee
Confidence 112334 444556888776 5578899999988877665 4557777888 4456777887777877765
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-14 Score=127.00 Aligned_cols=134 Identities=18% Similarity=0.277 Sum_probs=103.7
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
+....|.|+++.... ....|+.-...+.++.|+|...++..++ ...|++||+..+ .+.+.+......+.+++++
T Consensus 543 ~~~~~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred CCcceEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeec
Confidence 445779999996532 2234444567899999999887766554 567999998532 1112222223458899999
Q ss_pred CCCCEEEEEeCCCeEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 308 PDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
|.|--|+.|+.|+++..||+.- .+++++++.|+..|.+|+|++.-.+++|||.|+++.++
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999999999999964 46788999999999999999999999999999999987
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=117.91 Aligned_cols=143 Identities=21% Similarity=0.381 Sum_probs=116.2
Q ss_pred EEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 223 NVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
.+++||+|.+|.+|++..+. .++..+.+|...|--+.++|. .+.|+++|.|++|.+||+.+.. -++. +.
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~--l~ 171 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALIT--LD 171 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeee--cC
Confidence 58999999999999986542 356678999999999999874 3467899999999999997543 2222 33
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCC-ceEEEEEeCCCCEEEEE---eCCCcEEEecCC
Q 017296 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASA---SEDSTVALWELY 370 (374)
Q Consensus 296 ~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~---s~D~~v~~W~~~ 370 (374)
|.+-|++++|+-||.++++++.|++|||||.++++.+..-.+|++ .-..+.|-.+|..+-|| ..+..+-||+-+
T Consensus 172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 777899999999999999999999999999999999988888885 45667888899844443 367889999753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=113.15 Aligned_cols=150 Identities=23% Similarity=0.284 Sum_probs=115.6
Q ss_pred eEEEEEecCCcEEEEeccCC--CCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 222 VNVLAGYEDGSILVWDIRNP--GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~--~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
.++.+.|-|-+..+||++.. +..-+++..|...|..++|.. .-..|++.|.||++|++|++...-. ....+-....
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~ 242 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPS 242 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCC
Confidence 36888999999999999873 223566788999999999965 3356899999999999999754322 2233322223
Q ss_pred CCeEEEEECC-CCCEEEEEeCC-CeEEEEEccCC-eEEEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecCCCC
Q 017296 299 PGISGTSIRP-DSKIAATAGWD-RRVRIYNYRKG-SALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 299 ~~v~~~~~sp-~~~~l~s~~~d-g~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~~~~ 372 (374)
..+..+++++ |.++||+-..| ..|.|-|++.+ .++..|++|.+.|+.++|.|-. ..|.|++.|..+-+||+..+
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 3466777876 56678765554 67999999764 5688999999999999999965 49999999999999999654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=116.88 Aligned_cols=302 Identities=16% Similarity=0.256 Sum_probs=174.5
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc--cceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
-|+..++|.++||.++++++|..||.|.||.-.. +........|-+...+.+++|++ +|.+|+|||..+.+-+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS--DGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec--CCceEeecccceEEEEEee
Confidence 5888899999999999999999999999997533 33222222344334688899987 6789999999999999999
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
++++..-.|.+. ..+-.+.+ .+++.++++. ..|+.
T Consensus 281 ~T~~kqfLPRLg---s~I~~i~v-----------------------------------------S~ds~~~sl~-~~DNq 315 (792)
T KOG1963|consen 281 ETGKKQFLPRLG---SPILHIVV-----------------------------------------SPDSDLYSLV-LEDNQ 315 (792)
T ss_pred cCCCcccccccC---CeeEEEEE-----------------------------------------cCCCCeEEEE-ecCce
Confidence 987532112110 00000100 0111222222 23566
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee----
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---- 249 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~---- 249 (374)
|.+-.+.+-+....+...... .+......+.+...+ .+.| ..+ .++-....|.|++||+-+... +..+.
T Consensus 316 I~li~~~dl~~k~tIsgi~~~-~~~~k~~~~~l~t~~-~idp--r~~--~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~ 388 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPP-TPSTKTRPQSLTTGV-SIDP--RTN--SLVLNGHPGHVQFYDLYTDST-IYKLQVCDE 388 (792)
T ss_pred EEEEeccchhhhhhccCccCC-CccccccccccceeE-EEcC--CCC--ceeecCCCceEEEEeccccce-eeeEEEEee
Confidence 666654433322222211100 000001111111111 1111 111 245566789999999965332 22221
Q ss_pred -c------CccCeEEEEEecCCCceEEE--------ecC--CeEEEEEcCCCCCeEEEEEee-ecCCCCeEEEEECCC-C
Q 017296 250 -V------HLEPVLCLSIDESCNGGISG--------GAD--QKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPD-S 310 (374)
Q Consensus 250 -~------h~~~v~~~~~~~~~~~~~s~--------s~D--~~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~-~ 310 (374)
. +...++.++.+..+...+|. ..| ..+|+|-.+..+....+...+ .-|+..+..++|.+. .
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 1 22345555555555555553 233 478889877655445444443 335555556666543 3
Q ss_pred C-EEEEEeCCCeEEEEEccCCe----------EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 311 K-IAATAGWDRRVRIYNYRKGS----------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 311 ~-~l~s~~~dg~v~iwd~~~~~----------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
. ..++++.||.++||-+.+.+ +...-..|...+.+.+|+.||..|| .|.|.+|.+||...+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence 3 68899999999999884322 1122224778899999999996555 577999999998764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=103.67 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=164.3
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc--CeEEEEecC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIE 94 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--~~vrvwd~~ 94 (374)
-...++.+.|+.+...|-.|+.||. ++++...-...... ......++-.-|+. ..++-.+.+ +.+++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~--~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSK--DTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcc--cCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcc
Confidence 4566788889999988999998876 56665443221111 11222344444554 344433333 357777776
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
.+.. +|.+.+.. .++. +.-..+++++.- . ..|
T Consensus 77 k~~~--------------ICe~~fpt---------------------~IL~----------VrmNr~RLvV~L--e-e~I 108 (391)
T KOG2110|consen 77 KKTT--------------ICEIFFPT---------------------SILA----------VRMNRKRLVVCL--E-ESI 108 (391)
T ss_pred cCce--------------EEEEecCC---------------------ceEE----------EEEccceEEEEE--c-ccE
Confidence 4321 23221111 0000 000112322222 1 249
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-E-ecCCcEEEEeccCCCCceeeeecCc
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-G-YEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-s~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
.|+|+++=+.+-++... .+...++| ++.+..... +++- + ...|.|.+||..+ -.+...+..|.
T Consensus 109 yIydI~~MklLhTI~t~--------~~n~~gl~----AlS~n~~n~--ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~ 173 (391)
T KOG2110|consen 109 YIYDIKDMKLLHTIETT--------PPNPKGLC----ALSPNNANC--YLAYPGSTTSGDVVLFDTIN-LQPVNTINAHK 173 (391)
T ss_pred EEEecccceeehhhhcc--------CCCccceE----eeccCCCCc--eEEecCCCCCceEEEEEccc-ceeeeEEEecC
Confidence 99999887766555321 01122222 233322221 1221 2 3359999999975 45677788999
Q ss_pred cCeEEEEEecCCCceEEEecCCe-EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 253 EPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
.++.+++|+++|..+||+|..|+ ||++.+..++....++. ...--.|.+++|+|++++|++.+..++|++|.+.+-.
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999999985 68898854432222221 1112358899999999999999999999999875310
Q ss_pred -------------------------------------EEEEecccCCce-EEEEEe--CCCCEEEEEeCCCcEEEecCCC
Q 017296 332 -------------------------------------ALAILKYHHATC-NAVSFS--SDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 332 -------------------------------------~~~~~~~h~~~v-~~v~~s--p~~~~las~s~D~~v~~W~~~~ 371 (374)
...+.+...... ....+. ++...+--++.||.+..+.+.+
T Consensus 252 ~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 252 NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 001111111111 223444 3666777889999999998854
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-11 Score=108.97 Aligned_cols=263 Identities=12% Similarity=0.143 Sum_probs=143.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEe-cCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeecc-ccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~-s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~ 86 (374)
.+.++. +.+....|+++|++++|+.+ ..++.|.+|+... ++ +..............+++++ +++.+++++ .++
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~~~p~~i~~~~--~g~~l~v~~~~~~ 102 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLPGSPTHISTDH--QGRFLFSASYNAN 102 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCCCCceEEEECC--CCCEEEEEEcCCC
Confidence 444444 34567789999999988765 4578999999863 32 21111111111223455665 566666654 589
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.|.+|++++....... +... . ....... ..+ .++++++++
T Consensus 103 ~v~v~~~~~~g~~~~~---~~~~---------~---------~~~~~~~------------------~~~-~p~g~~l~v 142 (330)
T PRK11028 103 CVSVSPLDKDGIPVAP---IQII---------E---------GLEGCHS------------------ANI-DPDNRTLWV 142 (330)
T ss_pred eEEEEEECCCCCCCCc---eeec---------c---------CCCcccE------------------eEe-CCCCCEEEE
Confidence 9999999743211100 0000 0 0000000 001 123456677
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec-CCcEEEEeccCCC-C-
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPG-I- 243 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-dg~i~iwdl~~~~-~- 243 (374)
+...++.|.+||+.+...+............+.. .+. + .+.++ +. .++++.. +++|.+||+.... .
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~--p~~--~---~~~pd---g~-~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG--PRH--M---VFHPN---QQ-YAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCCC--Cce--E---EECCC---CC-EEEEEecCCCEEEEEEEeCCCCCE
Confidence 7777899999999874322111000000000000 111 1 23332 32 4555544 8999999996321 1
Q ss_pred -ceeeeecC------ccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 244 -PLTAMKVH------LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 -~~~~~~~h------~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
..+.+..+ ......+.++|++..++++. .+++|.+|+++.......+....... .....++|+|++++|++
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEE
Confidence 12222211 11233578899998887764 57899999997554433333322221 23457899999999987
Q ss_pred EeC-CCeEEEEEcc
Q 017296 316 AGW-DRRVRIYNYR 328 (374)
Q Consensus 316 ~~~-dg~v~iwd~~ 328 (374)
+.. +++|.+|++.
T Consensus 291 a~~~~~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKSHHISVYEID 304 (330)
T ss_pred EEccCCcEEEEEEc
Confidence 775 8999999874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-13 Score=121.30 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=157.7
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
+.|+......+|+||++-|+|++|+.+|++++||+.|+.|.+|+...--.+ .. .|. ..+.|+.|.|- .++|+|+
T Consensus 38 yD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~--D~IQCMsFNP~--~h~LasC 111 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHN--DAIQCMSFNPI--THQLASC 111 (1081)
T ss_pred EeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccC--CeeeEeecCch--HHHhhhc
Confidence 357788899999999999999999999999999999999999996432222 21 243 34778888773 3578887
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeec-ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
+-. .+-+|..+.-.+ .+.. +...+ .| . . ..+
T Consensus 112 sLs-dFglWS~~qK~V-------~K~kss~R~~-------------------~C-s------------------W-tnD- 143 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKSV-------SKHKSSSRII-------------------CC-S------------------W-TND- 143 (1081)
T ss_pred chh-hccccChhhhhH-------HhhhhheeEE-------------------Ee-e------------------e-cCC-
Confidence 753 356787653211 0000 00000 00 0 0 111
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce-EEEEEecCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-NVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs~dg~i~iwdl~~ 240 (374)
+.+++-|..||+|.+-+.. ++.-..+..+...+++.+ .+ .+.|....|.. .++......++-+|.+.
T Consensus 144 GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiw---------si-~~~p~sg~G~~di~aV~DW~qTLSFy~Ls- 211 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIW---------SI-CWNPSSGEGRNDILAVADWGQTLSFYQLS- 211 (1081)
T ss_pred CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCce---------EE-EecCCCCCCccceEEEEeccceeEEEEec-
Confidence 2245567778898887543 222223333222222211 11 23333333322 35556777777777774
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
++.+..-+.-.-...|++..+++.+++.|+.|+.++++.-++ ...........+|+.++.+|++++++.|+.||
T Consensus 212 -G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 212 -GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred -ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 221111111122345777788888999999999999995432 22334444557899999999999999999999
Q ss_pred eEEEEEcc
Q 017296 321 RVRIYNYR 328 (374)
Q Consensus 321 ~v~iwd~~ 328 (374)
||.-|++.
T Consensus 286 TiACyNl~ 293 (1081)
T KOG1538|consen 286 TIACYNLI 293 (1081)
T ss_pred eeehhhhH
Confidence 99998874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.8e-13 Score=112.64 Aligned_cols=148 Identities=13% Similarity=0.209 Sum_probs=117.7
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE---------
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK--------- 292 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~--------- 292 (374)
.++++|+.||.|.|||+.+.+ +-..+.+|..||.+++++++++.|+|+|.|..|++||+..++.....+.
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~ 114 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW 114 (405)
T ss_pred ceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence 468999999999999997643 4556889999999999999999999999999999999965442111110
Q ss_pred -----------eee-------c----C-------C----CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 293 -----------EIN-------L----E-------R----PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 293 -----------~~~-------~----~-------~----~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
.++ . | . .......|.+-|+||++|...|.+.++|..+.+++..++--
T Consensus 115 hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 115 HPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred ccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 000 0 0 0 00122347888999999999999999999999988877655
Q ss_pred C-CceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 340 H-ATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 340 ~-~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
. ..|..+.|+-.|+.|+.-+.|.+||.+++.
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 5 789999999999999999999999999876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=119.89 Aligned_cols=147 Identities=22% Similarity=0.312 Sum_probs=123.7
Q ss_pred EEEEEecCCcEEEEeccCCC--C------ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC------CC---
Q 017296 223 NVLAGYEDGSILVWDIRNPG--I------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH------ST--- 285 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~--~------~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~------~~--- 285 (374)
.+++|+.|..|++|-+.... . .+..+..|...|+++.|+|++..++||+.+|.+.+|.... .+
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 58899999999999885321 1 2345678999999999999999999999999999998651 11
Q ss_pred ---CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 286 ---GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 286 ---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
..+........|+..+..++|+|++.++++++.|.++++||+..|.....+..|+..|..++|.|-++++++=|.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 12344455566888899999999999999999999999999999999999999999999999999999999988888
Q ss_pred cEEEecC
Q 017296 363 TVALWEL 369 (374)
Q Consensus 363 ~v~~W~~ 369 (374)
..+..++
T Consensus 188 ~~~~~~~ 194 (434)
T KOG1009|consen 188 HPEGFSA 194 (434)
T ss_pred ccceeee
Confidence 6666544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=108.01 Aligned_cols=131 Identities=18% Similarity=0.380 Sum_probs=96.8
Q ss_pred CcEEEEeccCCCCceeeeec-CccCeEEEEEecCCCceEE--EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 231 GSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s--~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
|...+|.++....+...+.- ...+|..++++|++..++. |..++.|.+||++. ... .. .+...+..+.|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i--~~--~~~~~~n~i~ws 109 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKI--FS--FGTQPRNTISWS 109 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEe--Ee--ecCCCceEEEEC
Confidence 34566666544445544443 3457999999999988754 44678999999962 111 12 233457789999
Q ss_pred CCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe------CCCcEEEecCC
Q 017296 308 PDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS------EDSTVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s------~D~~v~~W~~~ 370 (374)
|+|++|+.|+.+ |.+.+||.++.+.+.+.. |. .+..++|+|||++|++++ .|+.++||++.
T Consensus 110 P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999988754 679999999888887764 44 478999999999999876 48999999874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-11 Score=116.01 Aligned_cols=305 Identities=17% Similarity=0.197 Sum_probs=176.9
Q ss_pred eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccc-ceeeeccccCeEEEEe
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD 92 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~D~~vrvwd 92 (374)
+-|-...=..-.|++|++.++-.. +..|+|+-..++.++..+..|... +..+.+.+.... ..+++.+.||+|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~--l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAP--LTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCc--cceeeecCCCccceEEEEEecCccEEEec
Confidence 444443334557899999888755 579999999999999988877654 555555554332 5678999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcc-cccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC-YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
...+.+.. ......+...+... +.. +...... ...+..... ...+...-
T Consensus 89 ~~~~~Llk-----t~~~~~~v~~~~~~--~~~----a~~s~~~~~s~~~~~~~-------------------~~~s~~~~ 138 (792)
T KOG1963|consen 89 WSDGELLK-----TFDNNLPVHALVYK--PAQ----ADISANVYVSVEDYSIL-------------------TTFSKKLS 138 (792)
T ss_pred CCCcEEEE-----EEecCCceeEEEec--hhH----hCccceeEeecccceee-------------------eecccccc
Confidence 98775321 11111111111110 000 0000000 000000000 00000000
Q ss_pred CeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC---cee
Q 017296 172 SEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---PLT 246 (374)
Q Consensus 172 ~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~---~~~ 246 (374)
+.++=..+++.. ....+.+. ... .++ .+.+ .+ .+...--+..+.+|+..+... ...
T Consensus 139 ~q~~~~~~~t~~~~~~d~~~~~----------~~~-~~I---~~~~---~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~ 199 (792)
T KOG1963|consen 139 KQSSRFVLATFDSAKGDFLKEH----------QEP-KSI---VDNN---SG--EFKGIVHMCKIHIYFVPKHTKHTSSRD 199 (792)
T ss_pred cceeeeEeeeccccchhhhhhh----------cCC-ccE---EEcC---Cc--eEEEEEEeeeEEEEEecccceeeccch
Confidence 111111111110 00000000 000 000 0110 11 233333456688888765221 111
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.-..|+-+++|.+++|.+.++++|..||.|.+|.--.....-.....++.|...|.+++|++||.+|+|||..+-..+|.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 12347778999999999999999999999999963221111111123567777899999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.++++. -|+.-.+.|..+.+|||+.+.+..-+|+.|.+-...+
T Consensus 280 ~~T~~kq-fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 280 LETGKKQ-FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ecCCCcc-cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 9998833 3555667999999999999998888899998876543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=109.12 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=105.4
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC-C-CCCEEEEEeCCCeEEEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR-P-DSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p-~~~~l~s~~~dg~v~iwd 326 (374)
.+|.+-|.++.||.-|+..+++|.|+++++||.+..++........+.|...|..+.+- | -|+.+|+.+.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999988888888888889999999999885 4 588999999999999996
Q ss_pred ccC------C---eEEEEecccCCceEEEEEeCC--CCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRK------G---SALAILKYHHATCNAVSFSSD--CKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~------~---~~~~~~~~h~~~v~~v~~sp~--~~~las~s~D~~v~~W~~~~~ 372 (374)
-.. + ....++......|..|.|.|. |-.||+++.||++||++.-+|
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 521 1 123456666789999999995 558999999999999987544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=105.26 Aligned_cols=147 Identities=19% Similarity=0.256 Sum_probs=112.2
Q ss_pred eEEEEEecCCcEEEEeccCC---------CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe----E
Q 017296 222 VNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS----C 288 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~----~ 288 (374)
..+++|+.+|+|.++.+.+- ..++...++|..|+..+.|..+ .++++ .||.|+=|.-+..... .
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~-gdG~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSG-GDGLVYGWEWNEEEESLATKR 99 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeec-cCceEEEeeehhhhhhccchh
Confidence 46888999999999998531 2356667899999999999743 34554 5699999876432211 1
Q ss_pred EEEEe--e---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 289 VIKKE--I---NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 289 ~~~~~--~---~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
.+... + ..+.+.|.++.+.|...-++.++.|+.+.-||+++|+...++++|...|.+++--.....+.||++||+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc
Confidence 11100 0 123356889999998887887889999999999999999999999999999998555567899999999
Q ss_pred EEEecCCC
Q 017296 364 VALWELYP 371 (374)
Q Consensus 364 v~~W~~~~ 371 (374)
+|+||...
T Consensus 180 vRvWd~kt 187 (325)
T KOG0649|consen 180 VRVWDTKT 187 (325)
T ss_pred EEEEeccc
Confidence 99999854
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=119.49 Aligned_cols=145 Identities=16% Similarity=0.245 Sum_probs=113.2
Q ss_pred EEEEEecCCcEEEEeccCC---------------------------CCceeeeecCccCeEEEEEecCCCceEEEecCCe
Q 017296 223 NVLAGYEDGSILVWDIRNP---------------------------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK 275 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~---------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~ 275 (374)
.++.+..+|.+.+||.... ..|+.....-...|+..+|++++..+|+-|.||.
T Consensus 234 ~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 234 LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 4777889999999986421 0111111222346778888999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC-----
Q 017296 276 IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS----- 350 (374)
Q Consensus 276 i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp----- 350 (374)
+|++|++... +...++.--.++.+++|||||+||++||+|--|.||.+.+.+.+..-++|...|+.|+|.|
T Consensus 314 LRvF~fdt~e----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ 389 (636)
T KOG2394|consen 314 LRIFDFDTQE----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTST 389 (636)
T ss_pred EEEeeccHHH----HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccc
Confidence 9999997532 2222333446799999999999999999999999999999999998999999999999973
Q ss_pred ------------------------------CC-------------CEEEEEeCCCcEEEecCCC
Q 017296 351 ------------------------------DC-------------KLMASASEDSTVALWELYP 371 (374)
Q Consensus 351 ------------------------------~~-------------~~las~s~D~~v~~W~~~~ 371 (374)
++ -.+.|.+.|..+.|||+++
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 11 2467889999999999964
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=116.65 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=79.4
Q ss_pred EEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
+...+|..++|++.........+ .+.. ....++|++..++..+.++ +.+||+........ .. . ....+.+
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~----~-~~~~~~~ 378 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SS----T-FLDESPS 378 (429)
T ss_pred EECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cC----C-CCCCCce
Confidence 34456788888875433223223 2332 4567899998888877766 45588865432211 11 1 1234578
Q ss_pred ECCCCCEEEEEeCCCeEEEEEc--cCCeEEEEecccCCceEEEEEeCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNY--RKGSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
|+||+++|+.++.++.+.+|++ .+++....+.+|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999999999999999998876 357778888888888999999984
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-11 Score=115.06 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=103.2
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee----ec-------CccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeE--
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM----KV-------HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSC-- 288 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~----~~-------h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~-- 288 (374)
.++++|.||.|..|+++.-..|...+ .. -...++++.|.+ +...++.|..+|.|.--+-.+.+...
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 37888889999999886543322211 11 123678888854 34468899999988774433222211
Q ss_pred --EEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc-CCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcE
Q 017296 289 --VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTV 364 (374)
Q Consensus 289 --~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v 364 (374)
........|...++++.++|-+..+...+.|-+|+||... ...++..+..+...|.+++|||-.. .+|++..||++
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 1111233456779999999976655444449999999887 6677777888888999999999876 67888899999
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.|||+.
T Consensus 467 ~iWDLl 472 (555)
T KOG1587|consen 467 DIWDLL 472 (555)
T ss_pred ehhhhh
Confidence 999984
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-11 Score=103.03 Aligned_cols=142 Identities=21% Similarity=0.335 Sum_probs=106.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeee---cCccCeEEEEEecCCCceEE-Ee-cCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGIS-GG-ADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~s-~s-~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
++++.=++ .|.|||++.-. .+.++. .+...+..++++....+++- ++ .-|.|.+||+..-+ ....+++|
T Consensus 99 RLvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~----~v~~I~aH 172 (391)
T KOG2110|consen 99 RLVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ----PVNTINAH 172 (391)
T ss_pred eEEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce----eeeEEEec
Confidence 45554444 49999997532 233322 23334556666555445543 23 35899999986432 23456789
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILKYHH--ATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...+.+++|+|+|.+||+|++.|| ||||.+.+|+.++.++... ..|.+++|+||+++|+..|.-++|.++.++
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 999999999999999999999998 8999999999999987554 578899999999999999999999999885
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-11 Score=118.45 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=98.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee--ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
.++.+...+.|..||+++.. ....+ .--.+.|+++++||.+..++.|...|.+.+||++.....+... .. ++..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~--~P-~~~~ 1240 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE--HP-ARAP 1240 (1431)
T ss_pred eEEEEEeccceEEecchhhh-hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc--Cc-ccCC
Confidence 46678889999999998632 12222 2235689999999999999999999999999998754332221 11 1234
Q ss_pred eEEEEECC---CCCEEEEEe--CCCeEEEEEccCCeEEEEeccc-CC------------------ceEEEEEeCCCCEEE
Q 017296 301 ISGTSIRP---DSKIAATAG--WDRRVRIYNYRKGSALAILKYH-HA------------------TCNAVSFSSDCKLMA 356 (374)
Q Consensus 301 v~~~~~sp---~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~h-~~------------------~v~~v~~sp~~~~la 356 (374)
+..+..+| .....++++ ..+.|.+|++.+|.+..++-.. .. ......+..-+..+.
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceee
Confidence 55555554 344555555 4788999999988665554322 10 111122333345889
Q ss_pred EEeCCCcEEEecCCCCC
Q 017296 357 SASEDSTVALWELYPPH 373 (374)
Q Consensus 357 s~s~D~~v~~W~~~~~~ 373 (374)
+|+.|+.||.||...|.
T Consensus 1321 tggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ecCCccceeeccCCCcc
Confidence 99999999999998875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=103.46 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=129.5
Q ss_pred cCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccce--ee-eeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 16 gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
.|.+++++-.|+. +-+++.++|-|.++.|||++++.. +. -+-.|... |.-++|.- ...+.++|.|.||.||+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE--V~DIaf~~-~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE--VYDIAFLK-GSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc--eeEEEecc-CccceEEEecCCCcEEEE
Confidence 4568899999986 667899999999999999998733 22 23346543 66777765 234689999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|++.-+..
T Consensus 225 DLR~leHS------------------------------------------------------------------------ 232 (364)
T KOG0290|consen 225 DLRSLEHS------------------------------------------------------------------------ 232 (364)
T ss_pred Eecccccc------------------------------------------------------------------------
Confidence 99752110
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-EecCCcEEEEeccCCCCceeeeec
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
+|.+=|....+.+..+..+ + +...++++ +.+...|.|-|+|.+..++..+++
T Consensus 233 -TIIYE~p~~~~pLlRLswn----------k----------------qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~ 285 (364)
T KOG0290|consen 233 -TIIYEDPSPSTPLLRLSWN----------K----------------QDPNYMATFAMDSNKVVILDIRVPCTPVARLRN 285 (364)
T ss_pred -eEEecCCCCCCcceeeccC----------c----------------CCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence 0000000001111122110 0 00011222 344567899999999999999999
Q ss_pred CccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCeEEEEECC-CCCEEEEEeCCCeEE
Q 017296 251 HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRP-DSKIAATAGWDRRVR 323 (374)
Q Consensus 251 h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~s~~~dg~v~ 323 (374)
|...|+.+++.| +...+.|+|.|..+-+||+..........+.+.+ -...|..+.|+| .+..|+... +++..
T Consensus 286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeee
Confidence 999999999965 4556889999999999999754321111111111 124588889986 344566443 44443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-13 Score=126.68 Aligned_cols=192 Identities=20% Similarity=0.284 Sum_probs=133.2
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
+..++.++.|++|..++||.++++.++..+.++. ....-+ ++. .....++++|.|..|++|-+
T Consensus 199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--------~ditdl--avs-------~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 199 DRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--------GDITDL--AVS-------SNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred ccccceEeecCccceeeeeeccchhhhccCCCCc--------cccchh--ccc-------hhhhhhhhcccCceEEEEec
Confidence 3445678899999999999999999988876542 211111 110 11124778999999999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe--------------EEEEEeee---------
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS--------------CVIKKEIN--------- 295 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~--------------~~~~~~~~--------- 295 (374)
.. +.++..+.+|++.|++++|+|. .+.+.||++++||.+-.... +.+..+.+
T Consensus 262 ~~-~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 262 PD-GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CC-CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 86 6788889999999999999985 47889999999998611100 00000000
Q ss_pred ---cCCCCeEE-------E---EECCC-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeC
Q 017296 296 ---LERPGISG-------T---SIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASE 360 (374)
Q Consensus 296 ---~~~~~v~~-------~---~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~ 360 (374)
........ + .++.| ..+.+++=.+-.+++|++.+|.....+.+|...+..+.++|-+. ...+++.
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 00000111 1 11111 13455566677888999999988888899999999999999666 4468999
Q ss_pred CCcEEEecCCCC
Q 017296 361 DSTVALWELYPP 372 (374)
Q Consensus 361 D~~v~~W~~~~~ 372 (374)
||...|||+-.+
T Consensus 417 dgst~iwdi~eg 428 (1113)
T KOG0644|consen 417 DGSTIIWDIWEG 428 (1113)
T ss_pred CCceEeeecccC
Confidence 999999998543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=117.90 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=137.1
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..++.+-+||...+..+..++... ...-+++....+ +....++++|+.-+.|.+|++.....+. -+
T Consensus 106 ~~~ns~~i~d~~~~~~~~~i~~~e---------r~~l~~~~~~g~----s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l 171 (967)
T KOG0974|consen 106 TSRNSLLIRDSKNSSVLSKIQSDE---------RCTLYSSLIIGD----SAEELYIASGSVFGEIIVWKPHEDNKPI-RL 171 (967)
T ss_pred EcCceEEEEecccCceehhcCCCc---------eEEEEeEEEEec----cCcEEEEEeccccccEEEEeccccCCcc-ee
Confidence 345689999988776655554321 011111111111 1223468889999999999997544444 57
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.+|...+..+.+.-++..+++.|.|.++|+|++++..... ...=.|..++..++|.|+ .+++++.|-+.++|+.
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~- 245 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV- 245 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--eeEEeccceEEEEEec-
Confidence 8999999999999999999999999999999998643211 111136678999999999 8999999999999976
Q ss_pred CCeEEEEecccC-CceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+..+.++.+|. ..++.++..++...++|++.|+.+++|++
T Consensus 246 ~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 246 NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 466777888897 57999999999889999999999999987
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-10 Score=97.89 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=84.4
Q ss_pred EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEeccc--CCceEEE
Q 017296 270 GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILKYH--HATCNAV 346 (374)
Q Consensus 270 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~h--~~~v~~v 346 (374)
|-.-|.|.+-|+...... ....+.+|...|.+++++.+|..+|+++..|| |||||..+|+.++.++.. .+.|.++
T Consensus 155 g~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred CCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 334688999888532211 12356789999999999999999999999998 999999999999988743 3689999
Q ss_pred EEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 347 SFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 347 ~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+||||..+||.+|.-||+.|+.+.+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=104.47 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=104.2
Q ss_pred EEecCCcEEEEeccCCCCceeeee-----cCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~-----~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
++-.|+.|.+|++.+.......+. .|....++-+++| +++.+++. .|+++..||+++...... ..++|.
T Consensus 139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s---I~dAHg 214 (370)
T KOG1007|consen 139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS---IEDAHG 214 (370)
T ss_pred EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc---hhhhhc
Confidence 344589999999987544333322 2344555555644 66665554 689999999975432222 124566
Q ss_pred CCeEEEEECCCCCE-EEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecC
Q 017296 299 PGISGTSIRPDSKI-AATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWEL 369 (374)
Q Consensus 299 ~~v~~~~~sp~~~~-l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~ 369 (374)
..++.+.|.|+.++ |++++.||.|||||.+.. .+++.+.+|...|++|.|+|.. ++|.|+|.|..|-+|..
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 67999999999875 689999999999999754 5688899999999999999965 48889999999999965
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=113.35 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=105.7
Q ss_pred eEEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEee
Q 017296 222 VNVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEI 294 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~ 294 (374)
..++.+++||.|++|.+...+ .+-..++.|.+.|..+.|+|- ...+++++.|-+|+|||+...+.. ..+
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~----~~l 716 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY----SRL 716 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh----hee
Confidence 368999999999999996543 245567899999999999873 345689999999999999765433 345
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe-EEEEecccC-CceEEEEEeCCCCEEEEEeCCC
Q 017296 295 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHH-ATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 295 ~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~ 362 (374)
..|.+.|.+++|||||+.+|+-|.||++++|+-++++ +++.-++.. ..-..+-|.-||++++..+-|+
T Consensus 717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 6788999999999999999999999999999987654 333323222 2334567888999887666554
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-10 Score=101.79 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=134.7
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecC--------------CCCCceEEEEEecC
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--------------KSQGFVNVLAGYED 230 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gs~d 230 (374)
++....|+.+++||.+.++.-..+...... .+...+.... ...+ .+.+...++.|...
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-------s~t~~~~~w~-L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASL-------SGTCTYTKWG-LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhc-------cCcceeEEEE-EEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 444556799999999998876665432211 0111111100 0000 11233457789999
Q ss_pred CcEEEEeccCCCCceeee-ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 231 GSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
|.|.+|+........+.. ..|-++|+++....+...+.|++.|..+..|+..... .....+.....+.+++++||
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~----~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV----IIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce----eeeeeccCCCccceEEEcCC
Confidence 999999997644322222 3588999999887777778999999999999986432 22333445567889999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCC-----CCE-EEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD-----CKL-MASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~-las~s~D~~v~~W~~ 369 (374)
++++++| .+.|++||+++++.+.++.+|.+.|.+++|.-+ |++ |.++..+..+.+|-.
T Consensus 156 ~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 156 GKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 9999887 478999999999999999999999999999877 664 455667777777854
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=111.62 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=109.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee----cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCC------------C
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK----VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHST------------G 286 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~----~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~------------~ 286 (374)
++.|..-|.|.+.|..... ....+. .....++|+.+-+ +...++.+-.+|.+.++|.+-.- +
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 7789999999999986521 111111 1246899999843 44456778889999999764110 0
Q ss_pred -eEEEE-----------EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE
Q 017296 287 -SCVIK-----------KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL 354 (374)
Q Consensus 287 -~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 354 (374)
..... ..+......+...+|+|||++||+-+.||.+||||..+.+.+..++.-.+...|+.|||||++
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE
Confidence 00000 011122346788999999999999999999999999988888777777789999999999999
Q ss_pred EEEEeCCCcEEEecCCCC
Q 017296 355 MASASEDSTVALWELYPP 372 (374)
Q Consensus 355 las~s~D~~v~~W~~~~~ 372 (374)
|++|++|-.|.+|.+.+.
T Consensus 347 IvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEER 364 (636)
T ss_pred EEecCCcceEEEEEeccc
Confidence 999999999999998653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-10 Score=106.51 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=94.1
Q ss_pred EEE-EecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLA-GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~-gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
++. .+.+|.+.||.+.........+..+...+....|+|++..++..+ .++...+|+++...+.... +. +. .
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l~-~~-~- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---VG-GR-G- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---ec-CC-C-
Confidence 444 457888777754322233455666767788899999998776555 5788999988654332221 11 11 1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
....|+||+++|+.++.++.+ +||+.+++.......+ ...++.|+|||++|++++.++.+++|.+.
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 456899999999888777654 5999887654322222 23567899999999999999999988763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-08 Score=85.53 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=81.8
Q ss_pred EecCCcEEEEeccCCCC-ceeeeecCccCeEEEEEecCCCceEEEecCC-eEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 227 GYEDGSILVWDIRNPGI-PLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
|..-|+|+|-|+..... +-..+..|...|.|++...+|..+||+|..| -||+||...++..+.++ .......+.++
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R--RG~d~A~iy~i 232 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR--RGVDRADIYCI 232 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--cCCchheEEEE
Confidence 67779999999976433 2356789999999999999999999999988 58999987655333322 22334569999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
+||||.++||.++..||++||.+++
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999998865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=104.27 Aligned_cols=120 Identities=18% Similarity=0.338 Sum_probs=98.0
Q ss_pred ccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCC-----CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 252 LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST-----GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 252 ~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..++..+.|++... .++||+.|..|++|-++... .+......+..|...++.+.|+|+|.++|||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45788888876544 68999999999999986532 1334445567788889999999999999999999999999
Q ss_pred Ecc--------C-----C---eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 326 NYR--------K-----G---SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 326 d~~--------~-----~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-.. + . ...+.+.+|...|..++|+||+.++++++.|.++++||+--
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 665 2 1 12346788999999999999999999999999999999753
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-10 Score=96.07 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=91.4
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc--
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-- 328 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-- 328 (374)
++...+++.+.|.++-|+.||.-..|.+|-++....-.+.+...+-.++.|.++.++|++-++++|+.|+++|+|...
T Consensus 99 iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 99 INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 456677788888888888888888888888875443322221222345679999999999999999999999999542
Q ss_pred ---C-------------CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 329 ---K-------------GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 329 ---~-------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+ |+.+..+....+.|..+.|+|+|..||-.+.|++|.+=|..-|
T Consensus 179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 1 1223344445678999999999999999999999998776544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=104.90 Aligned_cols=260 Identities=16% Similarity=0.215 Sum_probs=163.1
Q ss_pred eEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCC
Q 017296 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 22 ~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~ 101 (374)
+.+.|+.+|..|+-|+.-|.+-..|..+++....+..- ..|..+.|-. ..+++...+...+.++|-..-+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH---neq~~AVAQK~y~yvYD~~GtE---- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH---NEQFFAVAQKKYVYVYDNNGTE---- 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc---chHHHHhhhhceEEEecCCCcE----
Confidence 56888999999999999999999999887655443321 2234444433 2456677778888888864321
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~ 181 (374)
..+++...- ...+ ++-+ -.|++++++..+.++.-|+.+
T Consensus 203 -lHClk~~~~-v~rL--------------------------------------eFLP--yHfLL~~~~~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 203 -LHCLKRHIR-VARL--------------------------------------EFLP--YHFLLVAASEAGFLKYQDVST 240 (545)
T ss_pred -EeehhhcCc-hhhh--------------------------------------cccc--hhheeeecccCCceEEEeech
Confidence 111111000 0000 0000 146788888889999999999
Q ss_pred CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe
Q 017296 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID 261 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~ 261 (374)
|+.+..+.-. .++...|...+ -+ ..+-+|...|+|-+|.... ..|+..+..|..+|.+++++
T Consensus 241 GklVa~~~t~----------~G~~~vm~qNP------~N-aVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 241 GKLVASIRTG----------AGRTDVMKQNP------YN-AVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVD 302 (545)
T ss_pred hhhhHHHHcc----------CCccchhhcCC------cc-ceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEEC
Confidence 9876655321 11222222111 11 1355799999999999865 45677778899999999999
Q ss_pred cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-ccCCe--EEEEecc
Q 017296 262 ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN-YRKGS--ALAILKY 338 (374)
Q Consensus 262 ~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd-~~~~~--~~~~~~~ 338 (374)
+.|.+.+|+|.|..+++||++..-.... ... ......++||.-| +++.+.-..|.||- ...+. .-..+-.
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql~t----~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~ 375 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQLHT----YRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMN 375 (545)
T ss_pred CCCcEEeecccccceeEeeeccccccce----eec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhh
Confidence 9999999999999999999974321111 111 2346678888655 34455566899993 22211 1112222
Q ss_pred cC--CceEEEEEeCCCCEEEEE
Q 017296 339 HH--ATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 339 h~--~~v~~v~~sp~~~~las~ 358 (374)
|. +.|..+.|.|-...|--|
T Consensus 376 H~~~~~V~~l~FcP~EDvLGIG 397 (545)
T KOG1272|consen 376 HRCGGPVEDLRFCPYEDVLGIG 397 (545)
T ss_pred hccCcccccceeccHHHeeecc
Confidence 32 588899999965554433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-08 Score=93.02 Aligned_cols=281 Identities=17% Similarity=0.143 Sum_probs=153.3
Q ss_pred EEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeeccee
Q 017296 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (374)
Q Consensus 33 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~ 112 (374)
+++-..++.|.|.|..+.+.+..+...... ...+.+++ |+++++..+.|+.|.++|+.+++... .++.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAP--HAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTE--EEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCc--eeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence 456778899999999988888777643322 23344555 67888888899999999998874311 11111100
Q ss_pred eeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCc
Q 017296 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (374)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~ 192 (374)
. .. .+ ..++++++++....+.+.++|.++.+.+..+....
T Consensus 81 ----------~------------------~i-----------~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 81 ----------R------------------GI-----------AV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp ----------E------------------EE-----------EE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred ----------c------------------eE-----------EE-cCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 0 00 00 13456788888788999999999998877765332
Q ss_pred cCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE-e
Q 017296 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-G 271 (374)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-s 271 (374)
..... ...+ ..++.. .+ .....+++--+-+.|-+-|......................|++++++++.+ -
T Consensus 121 ~~~~~---~~~R--v~aIv~-s~---~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 121 MPVDG---PESR--VAAIVA-SP---GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp E-TTT---S-----EEEEEE--S---SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred ccccc---cCCC--ceeEEe-cC---CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence 11100 1111 111111 11 1222344444458888888765433222232334566778889998887654 4
Q ss_pred cCCeEEEEEcCCCCCeEEEE---------------------------------------------------EeeecCCCC
Q 017296 272 ADQKIVLYNLDHSTGSCVIK---------------------------------------------------KEINLERPG 300 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~---------------------------------------------------~~~~~~~~~ 300 (374)
.++.|-++|.+......... .++.....+
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 46677777765321100000 011111111
Q ss_pred eEEEEECCCCCEEEEE----eCCCeEEEEEccCCeEEEEecccC-CceEEEEEeCCCCEEEEEeCCC--cEEEecCCC
Q 017296 301 ISGTSIRPDSKIAATA----GWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDS--TVALWELYP 371 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~--~v~~W~~~~ 371 (374)
.-+.-||+++++... ...++|.++|.++.+...++.... ..+.++.|++||+++..+.+|+ .|.++|..+
T Consensus 272 -lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 272 -LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp ---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred -ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 335669999999877 445899999999998877775333 3589999999999664443333 699998643
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-10 Score=97.31 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=113.2
Q ss_pred EEEEEecC--CcEEEEeccCCCCceeeeec---------CccCeEEEEEecC--CCceEEEecCCeEEEEEcCCCCCeEE
Q 017296 223 NVLAGYED--GSILVWDIRNPGIPLTAMKV---------HLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCV 289 (374)
Q Consensus 223 ~~~~gs~d--g~i~iwdl~~~~~~~~~~~~---------h~~~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~~~~ 289 (374)
.+++|+.. ..+++||+... ..+..-+. -.-.++.+.|-+. ...|+++..-+.+++||...+ .+.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV 240 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPV 240 (412)
T ss_pred eEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-Ccce
Confidence 35558887 88999999764 22221111 1124566677444 567899999999999998743 3333
Q ss_pred EEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 290 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
. .+......++++...|.+.+|++|..-+.+..||++.++.+.. +++-.+.|.++-.+|.+++||++|-|..|||+|
T Consensus 241 ~--~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 241 A--QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred e--EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 2 2334456799999999999999999999999999999998876 788889999999999999999999999999999
Q ss_pred CCC
Q 017296 369 LYP 371 (374)
Q Consensus 369 ~~~ 371 (374)
+..
T Consensus 319 ~kt 321 (412)
T KOG3881|consen 319 IKT 321 (412)
T ss_pred ccc
Confidence 865
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=93.76 Aligned_cols=255 Identities=14% Similarity=0.221 Sum_probs=144.6
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeC-cccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
-+.++..++||.+.|++...-|...-+++.++|.++|||-. ..++.-..+. |.....+.+.++.. ...+|+.|-..
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~n 89 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDN 89 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEec
Confidence 34577889999999999998888889999999999999964 3344322221 33334455555554 44566666666
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
|++--+.+... -+.....+....|.+.+... .......+++
T Consensus 90 gtvtefs~sed---fnkm~~~r~~~~h~~~v~~~------------------------------------if~~~~e~V~ 130 (404)
T KOG1409|consen 90 GTVTEFALSED---FNKMTFLKDYLAHQARVSAI------------------------------------VFSLTHEWVL 130 (404)
T ss_pred ceEEEEEhhhh---hhhcchhhhhhhhhcceeeE------------------------------------EecCCceeEE
Confidence 66655544321 00000011111111100000 0000112222
Q ss_pred EcccCCCeEEEE-ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-CC
Q 017296 166 VAGEQLSEVEIW-DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GI 243 (374)
Q Consensus 166 ~~~~~d~~i~vW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-~~ 243 (374)
+.+.|..+ .| -.+.+..+.. +.+.... ............|-..|.|..-.+... -.
T Consensus 131 -s~~~dk~~-~~hc~e~~~~lg~------------------Y~~~~~~--t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~ 188 (404)
T KOG1409|consen 131 -STGKDKQF-AWHCTESGNRLGG------------------YNFETPA--SALQFDALYAFVGDHSGQITMLKLEQNGCQ 188 (404)
T ss_pred -Eeccccce-EEEeeccCCcccc------------------eEeeccC--CCCceeeEEEEecccccceEEEEEeecCCc
Confidence 22333222 23 1222221111 0000000 000001112334444555555544322 24
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
++.++.+|..++.++.+++....+.+|..|..+.+||+...++. ..++..|...+..++.-+--+.+.|.+.||.|.
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~---~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT---AYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce---eeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 57788999999999999998888899999999999999765543 234455666677777777778899999999999
Q ss_pred EEEcc
Q 017296 324 IYNYR 328 (374)
Q Consensus 324 iwd~~ 328 (374)
+||.+
T Consensus 266 ~w~mn 270 (404)
T KOG1409|consen 266 VWNMN 270 (404)
T ss_pred EEecc
Confidence 99986
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-10 Score=95.04 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=157.5
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-----eeeeeeeeece----------eeeEEeccCCccccceeeec
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~s~ 82 (374)
.+-|.+|.|.-.|.+|+||..+|.|.++.-+... ....++.|.+. ..+..+.+....+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999743322 12234444333 23556666665566678888
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
..|++|++|.+...... ...++.. ....+.... ... .+..++.
T Consensus 105 tNdktiKlWKi~er~~k--------~~~~~~~---~~~~~~~~~----------------~lr----------~p~~~~~ 147 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSK--------KEGYNLP---EEGPPGTIT----------------SLR----------LPVEGRH 147 (433)
T ss_pred cCCcceeeeeeeccccc--------ccccccc---ccCCCCccc----------------eee----------ceeeccc
Confidence 99999999999753210 0000000 000000000 000 0000000
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
-+.+.+. -.|++.=.....+..+ .+. ++. ..+...+|=.|-+|.++...
T Consensus 148 ~~~vea~---prRv~aNaHtyhiNSI-----------------------S~N---sD~--Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 148 DLEVEAS---PRRVYANAHTYHINSI-----------------------SVN---SDK--ETFLSADDLRINLWNLEIID 196 (433)
T ss_pred cceeeee---eeeeccccceeEeeee-----------------------eec---Ccc--ceEeeccceeeeeccccccC
Confidence 0111111 1222210000000000 011 111 12334456677888876443
Q ss_pred Ccee--eeecC-----ccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEE----Eee---------ecCCCCe
Q 017296 243 IPLT--AMKVH-----LEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIK----KEI---------NLERPGI 301 (374)
Q Consensus 243 ~~~~--~~~~h-----~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~----~~~---------~~~~~~v 301 (374)
..+. .++.+ ++-|++-.|+| .+..++-.|..|+|+|-|++... .|... .+. ..--..|
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a-LCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA-LCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh-hhcchhhhhccccCCcchhhHHHHhhhh
Confidence 3222 12222 24466677766 45566777888999999986321 11100 000 0001236
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEc-cCCeEEEEecccCC------------ce---EEEEEeCCCCEEEEEeCCCcEE
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNY-RKGSALAILKYHHA------------TC---NAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~h~~------------~v---~~v~~sp~~~~las~s~D~~v~ 365 (374)
+.+.|+++|+||++-. --+|++||+ ...+++.+++-|.- .| ..+.|+-++.+++|||-....+
T Consensus 276 SDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 276 SDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFR 354 (433)
T ss_pred hceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEE
Confidence 7899999999999764 379999999 45677777766641 12 3468999999999999999999
Q ss_pred EecCCCC
Q 017296 366 LWELYPP 372 (374)
Q Consensus 366 ~W~~~~~ 372 (374)
++++.++
T Consensus 355 vf~~~~g 361 (433)
T KOG1354|consen 355 VFNLARG 361 (433)
T ss_pred EecCCCC
Confidence 9986554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-11 Score=108.68 Aligned_cols=126 Identities=16% Similarity=0.281 Sum_probs=104.1
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC--CCCEEEEEeCCCeEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVR 323 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~v~ 323 (374)
+.+.||++-|+|+.+..+|..|++||.|-.+.+||.-... .+...-..|...|.++.|-| +.+++++|..|+.|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3578999999999999999999999999999999964221 11222345777899999988 577899999999999
Q ss_pred EEEccCC----------eEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCCCC
Q 017296 324 IYNYRKG----------SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPHA 374 (374)
Q Consensus 324 iwd~~~~----------~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~~~ 374 (374)
+||+.+. +....+..|...|..++-.|++. .+-++|+||+++-+|+.+||.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 9999752 23455677999999999999995 888999999999999999873
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=94.45 Aligned_cols=266 Identities=15% Similarity=0.227 Sum_probs=153.6
Q ss_pred CCCCCeEEeec-CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee-ceeeeEEeccCCccccceeeecc
Q 017296 6 PPPDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 6 ~~~~~~~~l~g-H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
..++|+.++.. |.+.|.||+|+.....|+||+.+++|++.|.++.+.+..+. |. ....|+.+..+|. .+.|++.+
T Consensus 92 k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~--DN~~~~~t 168 (609)
T KOG4227|consen 92 KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPT--DNTLIVVT 168 (609)
T ss_pred cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCC--CceEEEEe
Confidence 45688887765 55999999999999999999999999999999888765543 33 2234555666663 58999999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.++.|-+||++...-.. .... +...+.+ .+. ..+.+..+.+
T Consensus 169 ~~~~V~~~D~Rd~~~~~--~~~~-----------~AN~~~~----------F~t----------------~~F~P~~P~L 209 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQNPI--SLVL-----------PANSGKN----------FYT----------------AEFHPETPAL 209 (609)
T ss_pred cCceEEEEeccCCCCCC--ceee-----------ecCCCcc----------cee----------------eeecCCCcee
Confidence 99999999997632100 0000 0000000 000 1122334455
Q ss_pred EEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
++++. ..+-+-|||.+..+. +...... ...+.. ...+| .+ .+.+. |. .+++--....-.+||+....
T Consensus 210 i~~~~-~~~G~~~~D~R~~~~~~~~~~~~--~~L~~~--~~~~M--~~-~~~~~---G~-Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 210 ILVNS-ETGGPNVFDRRMQARPVYQRSMF--KGLPQE--NTEWM--GS-LWSPS---GN-QFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred EEecc-ccCCCCceeeccccchHHhhhcc--ccCccc--chhhh--he-eeCCC---CC-eehhhhccCCCEEeeeeccc
Confidence 55444 446689999886542 1110000 000000 00011 11 12111 11 12222222233456665433
Q ss_pred CceeeeecCc-------cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE----------------EEE---Eeeec
Q 017296 243 IPLTAMKVHL-------EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC----------------VIK---KEINL 296 (374)
Q Consensus 243 ~~~~~~~~h~-------~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~----------------~~~---~~~~~ 296 (374)
.++..+. |. -.+.+++|-.+.. +++||.+=.|.+|.+....... ... ..++.
T Consensus 278 ~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 278 CFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred ceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 3332221 22 1355667744433 7999999999999985321100 001 13467
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
|++-+..+.|+|...+|++.|-.+.++||.-
T Consensus 356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccccceeecCCcceEeccchhhheecccc
Confidence 8888889999999999999999999999954
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-09 Score=97.85 Aligned_cols=307 Identities=13% Similarity=0.101 Sum_probs=151.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec-cccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~ 87 (374)
+.+.++......-..+.|++||++++.++.|+.|.++|+.+++.+..+.... .-..+++++ ++++++.+ ..+++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPGT 101 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETTE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCCc
Confidence 5567777655444557899999999999999999999999998887765432 234556665 67777765 47899
Q ss_pred EEEEecCCCCCCCCCceeeeecce-------eeeeeeeeccccccccccCCCCcccccc---cCce--eecCCCCCCCCC
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSY-------HFCKLSLVKEPYANAKQANEPKDCYERE---VGET--VDTDSLCDSKDD 155 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~ 155 (374)
+.++|.++.+.. ..+..... ..+++-.............+....+..+ .... .....-....+.
T Consensus 102 v~v~D~~tle~v----~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 102 VSVIDAETLEPV----KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EEEEETTT--EE----EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred eeEeccccccce----eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 999999876432 11211110 0011100000000000000000001000 0000 000000000011
Q ss_pred CCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEE---eeecCCCCCceEEEEEecCCc
Q 017296 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ---AYLPSKSQGFVNVLAGYEDGS 232 (374)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gs~dg~ 232 (374)
...++++|++++....+.+-++|+++++....+...... ...+..-+... .++.....+. ..++.-....
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p------~~~~~~~~php~~g~vw~~~~~~~-~~~~~ig~~~ 250 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP------HPGPGANFPHPGFGPVWATSGLGY-FAIPLIGTDP 250 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB------EETTEEEEEETTTEEEEEEEBSSS-SEEEEEE--T
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccc------cccccccccCCCcceEEeeccccc-eecccccCCc
Confidence 223456777777777789999999998776554321100 00111000000 0000000111 1222223345
Q ss_pred EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE----ecCCeEEEEEcCCCCCeEEEEEeee-cCCCCeEEEEEC
Q 017296 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG----GADQKIVLYNLDHSTGSCVIKKEIN-LERPGISGTSIR 307 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~----s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s 307 (374)
+.+||... -..+..+.....+ ..+..+|+.++++.. ...++|.++|.+.. .. ...+. .....+..+.|+
T Consensus 251 v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~--~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 251 VSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KV--VKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TT-STTTB-TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EE--EE-HHHHHT--EEEEEE-
T ss_pred cccchhhc-CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--ce--eEEEeccCCCcEeccEEC
Confidence 56677654 2345566655556 667779999988876 44589999998653 11 11211 111237789999
Q ss_pred CCCCEEEEEeCC--CeEEEEEccCCeEEEEec
Q 017296 308 PDSKIAATAGWD--RRVRIYNYRKGSALAILK 337 (374)
Q Consensus 308 p~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~ 337 (374)
++|+++....++ +.|.++|..+.+.++.+.
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999976544443 379999999999888776
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=95.51 Aligned_cols=148 Identities=12% Similarity=0.168 Sum_probs=117.5
Q ss_pred eEEEEEecCCcEEEEeccCCC--CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 222 VNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
..++.+-+...|.||...... .+..+++.|...|+.+.+.+..+.+++++.|....+|... ..+.......+..+..
T Consensus 23 t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~~~WkptlvLlRiNr 101 (361)
T KOG1523|consen 23 TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SGGTWKPTLVLLRINR 101 (361)
T ss_pred ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC-CCCeeccceeEEEecc
Confidence 357788888999999986544 3567788999999999999999899999999999999873 2233332233333445
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe----cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL----KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++++.++|.+..+|.|+.-+.|.||-.+.-+...+- +-+...|.+++|+|++-+||.||.|+.+|++..+
T Consensus 102 AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 102 AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 6889999999999999999999999988655443221 2356789999999999999999999999999764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-10 Score=100.75 Aligned_cols=141 Identities=15% Similarity=0.234 Sum_probs=106.9
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
..++..++||.+.+-+- .+..-.....|...+.+-.+++++..+++++.||.|++|.-.+ +++..+......|
T Consensus 76 d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHHhhcCcee
Confidence 45888999999888753 2333344677999999999999999999999999999997532 2333333344569
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++++|.|+..-++ -+.-+.+.|=-+.-...+-.+++|.+-|.++.|+|...+++||++|..-|+||-+
T Consensus 149 ~c~~W~p~S~~vl-~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 149 RCARWAPNSNSIV-FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEEEECCCCCceE-EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 9999999977655 2334445444444333444689999999999999999999999999999999864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-08 Score=95.16 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=71.9
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
++..++|.+...+.....+..+........++|++..++..+.+ ..|.+||++...... + ... .......|
T Consensus 308 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-L----t~~-~~~~~p~~ 381 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L----TDT-FLDETPSI 381 (429)
T ss_pred CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-e----CCC-CCCCCceE
Confidence 44555654322222233343344455677889998888765543 357888886543221 1 111 12335789
Q ss_pred CCCCCEEEEEeCCCe---EEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 307 RPDSKIAATAGWDRR---VRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 307 sp~~~~l~s~~~dg~---v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
+|||++|+.++.++. +.++++ +++....+.+|.+.+...+|+|
T Consensus 382 SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 382 APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 999999998888765 566676 5666667888888888899987
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-09 Score=104.49 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=107.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccC--eEEEE---EecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP--VLCLS---IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~--v~~~~---~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++.++.++.+-+||.... ..+... .+.+. ..+.. +.++..++++|+.-+.|.+|+.... .... .+..|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~-~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~---~l~GH 174 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNS-SVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPI---RLKGH 174 (967)
T ss_pred eEEEEEcCceEEEEecccC-ceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcc---eeccc
Confidence 4677888899999998753 222222 23322 22222 2556667889999999999998732 2222 34568
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...+.++.++-||+++++.+.|+++|+|++.+.+... +.-+|+++|+.+.|.|+ +++|+++|.+.++|+.
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 8889999999999999999999999999999988776 66689999999999998 9999999999999954
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-09 Score=95.57 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
++++++||.|++|.- .+....++-....+|.|+++.|+...++-+-.+. +.+=-+.... -.-..++|..-|.+
T Consensus 119 Llt~GEDG~iKiWSr--sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h-~~IKpL~~n~----k~i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 119 LLTAGEDGVIKIWSR--SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH-ISIKPLAANS----KIIRWRAHDGLVLS 191 (737)
T ss_pred eeeecCCceEEEEec--cchHHHHHhhcCceeEEEEECCCCCceEEecCCe-EEEeeccccc----ceeEEeccCcEEEE
Confidence 788999999999974 2444455555678999999988766655543333 3332222111 11235678778999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
+.|+|...++++||+|-+.++||-. |..+..-..|+-+|++++|.|| +.++-+|
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred eecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee
Confidence 9999999999999999999999974 6667667778888888888888 5444444
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-10 Score=101.68 Aligned_cols=183 Identities=14% Similarity=0.170 Sum_probs=131.9
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
++.+++ |+..|.+-.+|..+.+....+...+..... .|.... .+++..+...+.+||-.
T Consensus 141 Grhlll-gGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv--------------~~LHne-----q~~AVAQK~y~yvYD~~- 199 (545)
T KOG1272|consen 141 GRHLLL-GGRKGHLAAFDWVTKKLHFEINVMETVRDV--------------TFLHNE-----QFFAVAQKKYVYVYDNN- 199 (545)
T ss_pred ccEEEe-cCCccceeeeecccceeeeeeehhhhhhhh--------------hhhcch-----HHHHhhhhceEEEecCC-
Confidence 344444 555688999999998876666533211111 111111 24555678889999853
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
+..+.-++. ...|..+.|-|-.-.|++++.-|.++--|+.. |..+ .++......+..++-.|-...+-.|...|
T Consensus 200 -GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~--GklV--a~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 200 -GTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVST--GKLV--ASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -CcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeech--hhhh--HHHHccCCccchhhcCCccceEEEcCCCc
Confidence 443433332 35788888888776678888889999888743 3322 22233334566778888888888999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|.+|.....+++..+..|.++|.+||+.++|+|+||++.|..|+|||+.
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 99999998889888888999999999999999999999999999999983
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=96.13 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=104.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.+++|..||++|+|+.... .+......|...|.++.|+|++..+++-+.| ..++|+.+.. .+....+.........
T Consensus 158 ~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g--~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG--AALARKTPFSKDEMFS 233 (398)
T ss_pred EeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--chhhhcCCcccchhhh
Confidence 6899999999999996542 3344567799999999999999999999999 9999999754 3333332222233455
Q ss_pred EEEECCCC-----CEEEEEeCCCeEEEEEccCC---eEEE--EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 303 GTSIRPDS-----KIAATAGWDRRVRIYNYRKG---SALA--ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 303 ~~~~sp~~-----~~l~s~~~dg~v~iwd~~~~---~~~~--~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+.|+.|+ ++.++...-+.|+.||+..- ..+. +.-.-.+.|++++.++||+++|-|+.||.|-|++...
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence 67788776 44455555567777766321 1111 1112235899999999999999999999999998754
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=86.85 Aligned_cols=178 Identities=16% Similarity=0.196 Sum_probs=111.9
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 243 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~- 243 (374)
++++..|..|+++|-.. ++...+... .+-+..|++ +.|. +...++.|+.. .|.+|....+..
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks~---------sQrnvtcla---wRPl---saselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKSV---------SQRNVTCLA---WRPL---SASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecch---------hhcceeEEE---eccC---Ccceeeeeecc-eeEEEEcCccccc
Confidence 34555677999998765 333333211 111222322 3332 22356777754 599998743211
Q ss_pred ----------ceee--eecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 244 ----------PLTA--MKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 244 ----------~~~~--~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
..+. ..+| .+|+.|.+.+++..++++|. |..|++||.+.++...... ....+++-+.||||+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----KGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc----cCCCceeeEEEcCCC
Confidence 1111 2334 69999999999999999886 5799999997665443321 123568889999999
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcE
Q 017296 311 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTV 364 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v 364 (374)
.++.++.-|+..++|+.....--....--.+.|....|+|+|++| ++.+...++
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 999999999999999654322111122234489999999999954 555544433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-08 Score=87.49 Aligned_cols=172 Identities=17% Similarity=0.253 Sum_probs=115.0
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee---
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--- 249 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~--- 249 (374)
.|.=.+|+.|+-+..+.... +...++.+ . ....++++|+.+|.|.+||.+... .+.++.
T Consensus 156 evYRlNLEqGrfL~P~~~~~----------~~lN~v~i---n----~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~ 217 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFETDS----------GELNVVSI---N----EEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAAS 217 (703)
T ss_pred ceEEEEcccccccccccccc----------ccceeeee---c----CccceEEecccCceEEEecchhhh-hheeeeccc
Confidence 46666888887766653210 11112221 1 122368889999999999998642 222221
Q ss_pred ---cCc-----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC--CCEEEEEeCC
Q 017296 250 ---VHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD--SKIAATAGWD 319 (374)
Q Consensus 250 ---~h~-----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~d 319 (374)
.|. ..|+++.|..++..++.|...|.+.+||++..+. .+..... ....|..+.|-+. +..|+| ...
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~-~e~pi~~l~~~~~~~q~~v~S-~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHG-YELPIKKLDWQDTDQQNKVVS-MDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccC-CccceeeecccccCCCceEEe-cch
Confidence 222 2499999988888999999999999999986543 2222211 1234677777654 444554 446
Q ss_pred CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 320 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 320 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
..++|||-.+|+.+..+. ....++.+.+-|++-++++|-++.-+..+
T Consensus 294 ~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred HHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 789999999999988775 45568889999999999998877665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-10 Score=66.53 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=36.5
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd 46 (374)
+++.++++|+++|++|+|+|++.+|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.7e-08 Score=90.44 Aligned_cols=90 Identities=11% Similarity=-0.002 Sum_probs=57.7
Q ss_pred eEEEEEecCCCceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC-e--EEEEEcc
Q 017296 255 VLCLSIDESCNGGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR-R--VRIYNYR 328 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~--v~iwd~~ 328 (374)
.....++|++..++..+.++ .|.+||++....... .. ........|+||+++|+.++.++ . +.+-++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-----t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-----TD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-----cC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 33567888888887766554 699999875432211 11 12235678999999987666544 3 333344
Q ss_pred CCeEEEEecccCCceEEEEEeCC
Q 017296 329 KGSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
+++....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 45555566667777777888873
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-06 Score=74.39 Aligned_cols=206 Identities=15% Similarity=0.212 Sum_probs=118.6
Q ss_pred CCceEEEcccCCCeEEEEecCCC-ceeEE--eccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEE
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTA-ERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iw 236 (374)
++++++++--.++.+.++++... ..... ....... .+....+.....-.+ .+.| .+...+++--....|.+|
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~~rq~~~h~H~v-~~~p---dg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNPDRQEGPHPHQV-VFSP---DGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESSTTTTSSTCEEEE-EE-T---TSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCcccccccccceeE-EECC---CCCEEEEEecCCCEEEEE
Confidence 34667777667889999999874 32221 1110000 000000011111111 2333 233344555556789999
Q ss_pred eccCCCCcee---eee-cCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeec-----C-CCCeEEEE
Q 017296 237 DIRNPGIPLT---AMK-VHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINL-----E-RPGISGTS 305 (374)
Q Consensus 237 dl~~~~~~~~---~~~-~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~-----~-~~~v~~~~ 305 (374)
++......+. .++ ......+.+.|++++..++ ..-.+++|.+++++..++.......... . ......++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 9975432222 122 2345678899999987764 5566889999999855555443332221 1 12577899
Q ss_pred ECCCCCEEEEEe-CCCeEEEEEccC--C--eEEEEecccCCceEEEEEeCCCCEEEEEe-CCCcEEEecCC
Q 017296 306 IRPDSKIAATAG-WDRRVRIYNYRK--G--SALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 370 (374)
Q Consensus 306 ~sp~~~~l~s~~-~dg~v~iwd~~~--~--~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~v~~W~~~ 370 (374)
++||+++|..+. ...+|.+|++.. + +.+..+.........++++|+|++|+.+. .++.|.+|+++
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999876554 578999999932 3 33344443344578999999999887664 67799999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4e-09 Score=107.22 Aligned_cols=132 Identities=12% Similarity=0.225 Sum_probs=100.8
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE---ecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG---GADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~---s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+..+..||.+-+|... .++...-+.|........|-.. .++++ +.++.+.+||.......... ..+|..+
T Consensus 2266 ~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~s~v---~~~H~~g 2338 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMNSLV---HTCHDGG 2338 (2439)
T ss_pred eeeeccCCceeecccC--CcceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCccccee---eeecCCC
Confidence 5556679999999885 4567778889888888888553 23554 35789999997544332222 2678889
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++.+++-|..++++|||.+|.|++||++..+...+++. +. ...++++++..|+++||++..+
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 99999999999999999999999999986665544443 33 4568999999999999999654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-07 Score=89.54 Aligned_cols=109 Identities=9% Similarity=0.014 Sum_probs=65.2
Q ss_pred EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
|.++|+.... ...+..+........++|++..++..+.++ .|.+||++..... . +. +........|+||
T Consensus 318 iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~----Lt-~~~~~~~p~~spd 389 (433)
T PRK04922 318 IYRVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T----LT-PGSLDESPSFAPN 389 (433)
T ss_pred EEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E----CC-CCCCCCCceECCC
Confidence 4445554322 222333333445678899998887655433 6899998654322 1 11 1122345689999
Q ss_pred CCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 310 SKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 310 ~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
|++|+..+.+ +.+.++++. ++....+..+.+.+...+|+|
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 9987765543 357777774 444555666666777778877
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-06 Score=73.86 Aligned_cols=268 Identities=14% Similarity=0.093 Sum_probs=143.6
Q ss_pred CcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee-cc---------ccCeEEEEecCCCCCCCCCceeeeec
Q 017296 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QG---------RDGTVKCWDIENGGLSSNPSLTIKTN 109 (374)
Q Consensus 40 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~---------~D~~vrvwd~~~~~~~~~~~~~~~~~ 109 (374)
++|.|-|..+++.+..+......+. + +++ |++.++. .+ .+..|.+||+.+++...+ +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~---~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~----i--- 93 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP---V-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD----I--- 93 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce---e-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE----E---
Confidence 8999999998887776654433332 2 444 4555543 44 588999999998753211 0
Q ss_pred ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC-CCeEEEEecCCCceeEEe
Q 017296 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-LSEVEIWDLNTAERCTRL 188 (374)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~vWd~~~~~~~~~~ 188 (374)
.+-.+|..... ..+. .. .+ .++++++.++-.. ++.|-+.|+++++.+..+
T Consensus 94 -------~~p~~p~~~~~----------~~~~-~~----------~l-s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 94 -------ELPEGPRFLVG----------TYPW-MT----------SL-TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred -------ccCCCchhhcc----------Cccc-eE----------EE-CCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 00000010000 0000 00 01 2334555555534 789999999999988877
Q ss_pred ccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee-eee-cCc--cCeEEE-EEec-
Q 017296 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AMK-VHL--EPVLCL-SIDE- 262 (374)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~-~~~-~h~--~~v~~~-~~~~- 262 (374)
.-+.| .. + +. ..+. ...+-+.||......+...++... ... .+. .++..- .+.+
T Consensus 145 ~vp~~----------~~----v--y~-t~e~---~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 145 DVPDC----------YH----I--FP-TAND---TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred eCCCC----------cE----E--EE-ecCC---ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 53211 10 0 00 0001 112233455555444433222110 000 011 111110 2233
Q ss_pred CCCceEEEecCCeEEEEEcCCCCCeEEEEEe-e-------ecCCCCeEEEEECCCCCEEEEEe----------CCCeEEE
Q 017296 263 SCNGGISGGADQKIVLYNLDHSTGSCVIKKE-I-------NLERPGISGTSIRPDSKIAATAG----------WDRRVRI 324 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~-~-------~~~~~~v~~~~~sp~~~~l~s~~----------~dg~v~i 324 (374)
++..+.... .|+|.+-|+....-....... . ...-.+..-++++|+++.+..+. ..+.|.+
T Consensus 205 dg~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 454444433 399999997543221111101 0 11112344599999998876532 1258999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEe-CCCcEEEecCCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 371 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s-~D~~v~~W~~~~ 371 (374)
+|..+++.+..+.- ...++.++++||++ +|.... .++.|.+.|...
T Consensus 284 iD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 284 VDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99999999988763 45789999999999 777655 688899998754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.7e-08 Score=89.78 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=105.1
Q ss_pred ceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 162 KYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 162 ~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+.++++... ...|.+||+.+++......... ... . ..+.++ +...+++.+.+|...||.+.
T Consensus 208 ~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-----------~~~--~-~~~SPD---G~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 208 TKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-----------SNS--A-PAWSPD---GRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-----------Ccc--c-eEECCC---CCEEEEEEccCCCceEEEEE
Confidence 444444332 3469999999886432211100 000 0 123332 33334466778888888764
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
........+..+........|+|++..++..+. ++...+|.++..++.... +..+.......+|||||++|+..+.
T Consensus 271 ~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---EecCCCCcCceEECCCCCEEEEEEc
Confidence 333334455555555566789999988876654 567788876533332211 1112222345789999999987765
Q ss_pred CC---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 319 DR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 319 dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
++ .|.+||+.+++.. .+..+ .......|+|||+.|+.++.++
T Consensus 348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 54 6999999877643 33322 2346779999999887766544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-09 Score=63.99 Aligned_cols=39 Identities=28% Similarity=0.647 Sum_probs=36.7
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
++++.++++|.+.|.+++|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367789999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-06 Score=78.12 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=88.9
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.++.+.++.. ......+ --.+||.++.+++++..++..- --..+.++|++.. .+ +......-..+-|+|
T Consensus 251 q~Lyll~t~g-~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v----~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 251 QTLYLLATQG-ESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PV----FDFPEGPRNTAFFNP 321 (566)
T ss_pred ceEEEEEecC-ceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---Ee----EeCCCCCccceEECC
Confidence 3566666541 1112112 1367999999999887665432 2457888888642 11 222334456789999
Q ss_pred CCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe------CCCcEEEecCC
Q 017296 309 DSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS------EDSTVALWELY 370 (374)
Q Consensus 309 ~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s------~D~~v~~W~~~ 370 (374)
.|++|+-+|.+ |.|.|||+.+.+.+..+..-. .+-.+|+|||+++.|+. -|+-++||+++
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999888864 889999999988887765332 34469999999988764 58999999874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-07 Score=84.24 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=79.9
Q ss_pred EEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++.+.++. |.+||++.. ....+..+........++|++..++..+. ++ .|.++|++...... +....
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-----lt~~~ 333 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-----ISFGG 333 (435)
T ss_pred EEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-----eecCC
Confidence 344555555 666677643 34455556656677889999988877664 33 57777775432221 11122
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 299 PGISGTSIRPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
.......|+|||+.|+....+ ..|.+||+..+. ...+. +...+....|+|||+.|+..+.
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 335567899999998866543 368888875443 33333 2335677899999998876554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.4e-09 Score=105.82 Aligned_cols=229 Identities=14% Similarity=0.229 Sum_probs=147.2
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
.+++-|-..|.++.-+|...+-+||+.||.|++|....++.+..+..-.. ..+..+.|+. .|+.+..+-.||.+-+|
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeec
Confidence 34556778888888899999999999999999999988887766543333 4567777776 56788888889999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
.+.- + |.. .. +|+.... ..+.+++ +
T Consensus 2279 q~~p-k----~~~---------------s~---------------------------qchnk~~-----~Df~Fi~-s-- 2303 (2439)
T KOG1064|consen 2279 QASP-K----PYT---------------SW---------------------------QCHNKAL-----SDFRFIG-S-- 2303 (2439)
T ss_pred ccCC-c----cee---------------cc---------------------------ccCCccc-----cceeeee-h--
Confidence 9851 1 000 00 0000000 0000100 0
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEE---EEecCCcEEEEeccCCCCceeee
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL---AGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
.++ ..++++.+.+||.-.+...-...
T Consensus 2304 ---------------------------------------------------~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2304 ---------------------------------------------------LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred ---------------------------------------------------hhhccccCCCCCcccchhcccCcccceee
Confidence 011 12346778888865444332333
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.|.+.++++.+-|+...+++||.+|.|++||++..+-.+.+. . +. ...++++|+..|.++||++.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~---------~----~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ---------A----LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh---------h----hh-hhheeeccCcccceEEEEcc
Confidence 7899999999999998999999999999999996433222111 0 22 35589999999999999998
Q ss_pred CCeEEEEecc-cC--C--ceEEEE-EeCCCCEEEEEeCCCc
Q 017296 329 KGSALAILKY-HH--A--TCNAVS-FSSDCKLMASASEDST 363 (374)
Q Consensus 329 ~~~~~~~~~~-h~--~--~v~~v~-~sp~~~~las~s~D~~ 363 (374)
....++++.. |. + .+.... +--.+..|++++.|++
T Consensus 2399 ~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 8776665542 21 1 011111 1112346778888874
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=83.93 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=53.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEc
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~ 281 (374)
.+++++.||.||+|..++ ..|+..++.|...|++++|+|+....|++|.|++|.||++
T Consensus 265 IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 578899999999999987 5788999999999999999999888899999999999986
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=86.18 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=104.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEE----------EEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV----------IKK 292 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~----------~~~ 292 (374)
++++..|-.|++||-.. .. ...++ .-...|+|+++-|.+...++-+..+-|.+|..+....... ...
T Consensus 113 fava~nddvVriy~kss-t~-pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TC-PTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhccCcEEEEeccCC-CC-CceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 67788899999999654 33 23343 2456899999988776666666677799998753211000 001
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
....| ..|+++.+.+||..+++++. |..|.|||..++..+-......+.++-+.|||||.+|+.+.-|+.-++|+.
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 11122 45899999999999998885 678999999887655433345567888999999999999999999999964
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-07 Score=79.19 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=74.7
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++.|..++.|.+||++ ..++..+ +..+++.+.|+|.+..++.++.+ |.+.+||++.. ... .. .+...
T Consensus 76 vi~g~~~~~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i--~~--~~~~~ 145 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKI--ST--FEHSD 145 (194)
T ss_pred EEEccCCcccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEe--ec--cccCc
Confidence 3446678899999996 2334333 56788899999999999988754 67999999732 222 11 22345
Q ss_pred eEEEEECCCCCEEEEEeC------CCeEEEEEccCCeEEEEe
Q 017296 301 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~------dg~v~iwd~~~~~~~~~~ 336 (374)
+..++|+|||++++++.. |..++||+. .|+.+...
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 789999999999998774 788999998 47766543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=86.20 Aligned_cols=144 Identities=19% Similarity=0.220 Sum_probs=93.0
Q ss_pred EEEEEecCCcEEEEeccCCCCcee---eeecC--ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLT---AMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~---~~~~h--~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++.+..+....+++++....... ..... ...+..+..+......-.++....+.+|+.... .+. .+-+|
T Consensus 76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--~~~---~~lGh 150 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--RCE---PILGH 150 (390)
T ss_pred EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--Ccc---hhhhh
Confidence 466677777777777765332111 11111 112222333333222234556667777766532 111 12346
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
-+.++.++++||+++|+++..|..||+-.......+..+ .||++.|..++.-+ ++.|+|+|.|++|++||+..+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccC
Confidence 677899999999999999999999999766544444444 47999999999865 467999999999999998643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.6e-07 Score=83.39 Aligned_cols=109 Identities=6% Similarity=-0.019 Sum_probs=63.9
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.|.+||+... ..+.+..+...+....++|++..++..+.+ ..|.+||++... ...+ . ....+....|+|
T Consensus 315 ~Iy~~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~l----t-~~~~~~~p~~sp 386 (435)
T PRK05137 315 QLYVMNADGS--NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERIL----T-SGFLVEGPTWAP 386 (435)
T ss_pred eEEEEECCCC--CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEec----c-CCCCCCCCeECC
Confidence 5667776532 233343344455667889999888766543 367888875432 1111 1 112356789999
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 309 DSKIAATAGWD------RRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 309 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
||+.|+..+.+ ..+.+.|+..++. ..+. ..+.+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 99988765543 2466777755443 3444 344566667776
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.9e-07 Score=83.64 Aligned_cols=139 Identities=11% Similarity=0.097 Sum_probs=87.3
Q ss_pred EEEEecCC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC-CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+++.+.+| .|.+||++.. . ...+..+...+....|+|++..++..+.+ +...+|.++..++... .+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~---~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ---RITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE---EeecCCCC
Confidence 33444444 5888998653 2 33444445567788999999888777654 5556665433322211 11222233
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc---EEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST---VALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~---v~~W~~ 369 (374)
.....|+|||++|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.|+. +.+|++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4568899999998776543 35888999877643 33321 22345789999999999888875 555655
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=72.74 Aligned_cols=284 Identities=13% Similarity=0.152 Sum_probs=147.4
Q ss_pred ceeEEEEeCCCCEEEEecC----CCcEEEEeCccc--ce--eeeeeeeeceeeeEEeccCCccccceeeec-cccCeEEE
Q 017296 20 SVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--RT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKC 90 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~----D~~v~vWd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~vrv 90 (374)
.-..|++++++++|++..+ ++.|..|..... +. +.... .....-.-++.++ +++.|+.+ ..+++|.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~--~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDP--DGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECT--TSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEec--CCCEEEEEEccCCeEEE
Confidence 3356899999999998876 468888887643 22 22211 1111112234444 55666655 46899999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
+++..... +.......... ...+.. ..+.....++. .+ .+++++++++...
T Consensus 114 ~~l~~~g~-----l~~~~~~~~~~----g~g~~~-~rq~~~h~H~v------------------~~-~pdg~~v~v~dlG 164 (345)
T PF10282_consen 114 FPLDDDGS-----LGEVVQTVRHE----GSGPNP-DRQEGPHPHQV------------------VF-SPDGRFVYVPDLG 164 (345)
T ss_dssp EEECTTSE-----EEEEEEEEESE----EEESST-TTTSSTCEEEE------------------EE--TTSSEEEEEETT
T ss_pred EEccCCcc-----cceeeeecccC----CCCCcc-cccccccceeE------------------EE-CCCCCEEEEEecC
Confidence 99976311 11000000000 000000 00000000000 01 2334555555544
Q ss_pred CCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 171 LSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 171 d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
...|.+|++..... +.....-... .+ ...+.+ .|.++ +....++.-.+++|.+|++......+...+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~--~G--~GPRh~-----~f~pd---g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVP--PG--SGPRHL-----AFSPD---GKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECS--TT--SSEEEE-----EE-TT---SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccc--cC--CCCcEE-----EEcCC---cCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 56899999876551 2221100000 00 001111 23332 333455667788999999872221221111
Q ss_pred -------cC--ccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe-C
Q 017296 250 -------VH--LEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG-W 318 (374)
Q Consensus 250 -------~h--~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~ 318 (374)
.. ......+.++|+++.++. ....++|.+++++..++..............-+.++|+|++++|+.++ .
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 11 125777889999987754 456789999999766666655555554445578999999999988777 5
Q ss_pred CCeEEEEEcc--CCeEEEEec-ccCCceEEEEE
Q 017296 319 DRRVRIYNYR--KGSALAILK-YHHATCNAVSF 348 (374)
Q Consensus 319 dg~v~iwd~~--~~~~~~~~~-~h~~~v~~v~~ 348 (374)
+++|.+|++. +|+....-. .......||.|
T Consensus 313 s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 6799999774 555333221 12345566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-08 Score=91.70 Aligned_cols=143 Identities=20% Similarity=0.281 Sum_probs=94.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+++.+..+.|++||++..+.++..+++|...|+.+.|... ...+.+.+.|+++++||.+.++..... .......+.
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~---~vtt~~piw 249 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR---TVTTNFPIW 249 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce---eccccCcce
Confidence 4555667789999999988999999999999999998542 233578999999999998765422111 111123355
Q ss_pred EEEECCCCC--EEE-EEeCCCeEEE---------EEccC-CeEEEEecccCCceEEEEEeCC--------CC--EEEEEe
Q 017296 303 GTSIRPDSK--IAA-TAGWDRRVRI---------YNYRK-GSALAILKYHHATCNAVSFSSD--------CK--LMASAS 359 (374)
Q Consensus 303 ~~~~sp~~~--~l~-s~~~dg~v~i---------wd~~~-~~~~~~~~~h~~~v~~v~~sp~--------~~--~las~s 359 (374)
.-.|-|-|. ++. .-| +..|.+ |++.+ .+++.++.||...|....|-.. .+ .|+|=|
T Consensus 250 ~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred eccccccCceeEeccccC-CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 555656333 111 111 113333 44433 3578899999988866555432 22 799999
Q ss_pred CCCcEEEecCC
Q 017296 360 EDSTVALWELY 370 (374)
Q Consensus 360 ~D~~v~~W~~~ 370 (374)
.|.++|+|.+.
T Consensus 329 kD~~lrlWpI~ 339 (1081)
T KOG0309|consen 329 KDQTLRLWPID 339 (1081)
T ss_pred cCCceEeeecc
Confidence 99999999875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-07 Score=77.39 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=156.7
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-----eeeeeeeeece----------eeeEEeccCCccccceeee
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~s 81 (374)
-.+.|+++.|...|.+|++|...|.|.++.-+..+ .+..+++|... ..+..+.+....+.++++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35778999999999999999999999999854433 12345555433 2355566655445678888
Q ss_pred ccccCeEEEEecCCCCC--CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
.+.|++|++|.+....+ ..+..+ ...+|.. .+.+...... ...++ -
T Consensus 105 stNdktiKlWKiyeknlk~va~nnl---s~~~~~~----~~g~~~s~~~--------l~lpr-----------------l 152 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNL---SDSFHSP----MGGPLTSTKE--------LLLPR-----------------L 152 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccc---ccccccc----cCCCcCCHHH--------hhccc-----------------c
Confidence 89999999999975311 000000 0011110 0000000000 00000 0
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
...+.++++. ..|++.-. + .+.+-...+..+ . ..+..++|-.|.+|++.
T Consensus 153 s~hd~iiaa~---p~rvyaNa------------------H-----~yhiNSiS~NsD----~-et~lSaDdLrINLWnl~ 201 (460)
T COG5170 153 SEHDEIIAAK---PCRVYANA------------------H-----PYHINSISFNSD----K-ETLLSADDLRINLWNLE 201 (460)
T ss_pred cccceEEEec---cceecccc------------------c-----eeEeeeeeecCc----h-heeeeccceeeeecccc
Confidence 0011111111 11221000 0 000000112111 1 23445567889999987
Q ss_pred CCCCcee--eeecC-----ccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEE-----Eeee--------cCC
Q 017296 240 NPGIPLT--AMKVH-----LEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIK-----KEIN--------LER 298 (374)
Q Consensus 240 ~~~~~~~--~~~~h-----~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~-----~~~~--------~~~ 298 (374)
.....+. .++.| +.-|++..|+|. +..+.-.+..|.|++-|++... .|... ..+. .-.
T Consensus 202 i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a-lcdn~~klfe~~~D~v~~~ff~eiv 280 (460)
T COG5170 202 IIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA-LCDNSKKLFELTIDGVDVDFFEEIV 280 (460)
T ss_pred ccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh-hccCchhhhhhccCcccchhHHHHh
Confidence 5543322 23333 245677777764 4455667788999999986321 11100 0000 111
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccC-CeEEEEecccCC------------ce---EEEEEeCCCCEEEEEeCCC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHA------------TC---NAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~------------~v---~~v~~sp~~~~las~s~D~ 362 (374)
..|..+.|+|+|+||++-. --+|+|||++- ..+++++.-|.. .| ..+.||-|.+.+.|||-..
T Consensus 281 sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N 359 (460)
T COG5170 281 SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN 359 (460)
T ss_pred hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccc
Confidence 3467789999999999765 46999999964 456777755532 22 3367888888999988777
Q ss_pred cEEEec
Q 017296 363 TVALWE 368 (374)
Q Consensus 363 ~v~~W~ 368 (374)
.--++.
T Consensus 360 Nfgiyp 365 (460)
T COG5170 360 NFGIYP 365 (460)
T ss_pred ceeeec
Confidence 666654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=84.43 Aligned_cols=146 Identities=14% Similarity=0.219 Sum_probs=104.2
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe--eecC----
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--INLE---- 297 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~--~~~~---- 297 (374)
++.+.....|.=++|+. +.-+..+......++++.+++....++.|+.||.+.+||.+.......+... ...+
T Consensus 148 ly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccc-cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 44444455677778875 4446666666789999999887766777888999999998754322222111 1111
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC--CceEEEEEeCC--CCEEEEEeCCCcEEEecCCCC
Q 017296 298 -RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH--ATCNAVSFSSD--CKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 298 -~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~--~~~las~s~D~~v~~W~~~~~ 372 (374)
...|+++.|+.+|=.|+.|..+|.|.|+|++..+++.. +.|. -+|..++|.+. +..|+|.. -..+|||+-..+
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G 304 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG 304 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEecc-hHHhhhcccccC
Confidence 13489999999999999999999999999999887754 3354 57888999875 34676653 578899986544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=81.78 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=84.6
Q ss_pred EEEEecCC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+++.+.+| .|.+||+... ....+..+........|++++..++..+. ++...+|.++..++.... +......
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~---lt~~g~~ 337 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER---LTFQGNY 337 (433)
T ss_pred EEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---eecCCCC
Confidence 34455555 5888998753 24445555555567889999988877664 455444443322222211 1112223
Q ss_pred eEEEEECCCCCEEEEEeCCC---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-C--cEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-S--TVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~--~v~~W~~ 369 (374)
....+|||||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ + .+.++++
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 44689999999988665433 6999999877644 343 33344567999999987766543 3 4555554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=83.68 Aligned_cols=146 Identities=18% Similarity=0.292 Sum_probs=97.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee--ec-Ccc---CeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeE---EEE-
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM--KV-HLE---PVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSC---VIK- 291 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~--~~-h~~---~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~---~~~- 291 (374)
.+++++.|+.++-+|++... +-..+ .. +.. ....++++|... .+++++.|..+++||.+.-.... .+.
T Consensus 247 ~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~ 325 (559)
T KOG1334|consen 247 PFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK 325 (559)
T ss_pred cccccccccceeeeeeccCC-ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence 48899999999999998642 22222 22 222 466777787554 67899999999999975321110 000
Q ss_pred ---Eee-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc--CC----------eEEE-EecccCC--ceEEEE-EeCC
Q 017296 292 ---KEI-NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR--KG----------SALA-ILKYHHA--TCNAVS-FSSD 351 (374)
Q Consensus 292 ---~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~--~~----------~~~~-~~~~h~~--~v~~v~-~sp~ 351 (374)
..+ ....-.|++++|+.++.-+.+.-.|-.|.+|... .| ...+ .+++|.+ .|..+- |-|.
T Consensus 326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc
Confidence 001 1111358999999877777777788899999442 22 1122 3788875 466665 4688
Q ss_pred CCEEEEEeCCCcEEEecC
Q 017296 352 CKLMASASEDSTVALWEL 369 (374)
Q Consensus 352 ~~~las~s~D~~v~~W~~ 369 (374)
.++++|||.=|.|.||+=
T Consensus 406 sEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cceEEecCccceEEEEec
Confidence 899999999999999974
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-05 Score=72.24 Aligned_cols=130 Identities=14% Similarity=0.266 Sum_probs=87.7
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
...+.|++++....++. ..-.++|...++.|....++..+ .+..+.++|++.. ... ......-..+.|+
T Consensus 254 esnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~----~~Pe~~rNT~~fs 324 (561)
T COG5354 254 ESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRF----YFPEQKRNTIFFS 324 (561)
T ss_pred cceEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc---eEE----ecCCccccccccc
Confidence 56788998875444432 24578999999988777776554 5778888888642 111 1112223457899
Q ss_pred CCCCEEEEEeCC---CeEEEEEccCCeEE-EEecccCCceEEEEEeCCCCEEEEE------eCCCcEEEecCC
Q 017296 308 PDSKIAATAGWD---RRVRIYNYRKGSAL-AILKYHHATCNAVSFSSDCKLMASA------SEDSTVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~d---g~v~iwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~las~------s~D~~v~~W~~~ 370 (374)
|.+++++.++.| |.|-+||....... ..+.+ ....-+.|+||++++-++ -.|..|+||++.
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 999999998876 57999998643222 23432 223445899999977653 368999999985
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-06 Score=77.88 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=101.3
Q ss_pred CCceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC--cEEE
Q 017296 160 GPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILV 235 (374)
Q Consensus 160 ~~~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg--~i~i 235 (374)
++++++++... ...|.+||+.+++......... ... . ..+.++ +...+++.+.++ .|.+
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~-----------~~~--~-~~~spD---g~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG-----------MNG--A-PAFSPD---GSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC-----------Ccc--c-eEECCC---CCEEEEEECCCCCccEEE
Confidence 33445444332 2579999999875432211100 000 0 123322 332334444444 5888
Q ss_pred EeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 236 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
||+... ....+..+........|++++..++..+. ++ .|.++|++.. ... .+..+........|+|++++
T Consensus 263 ~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~---~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 263 MDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--EVR---RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CEE---EeecCCCCccCeEECCCCCE
Confidence 888643 23344444444556678888887776554 33 5666666533 211 12222334567899999999
Q ss_pred EEEEeCCC---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 313 AATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 313 l~s~~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
++.++.++ .|.+||+.++.. ..+..+ .......|+|||+.|+.++.++.
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCC
Confidence 98888776 788999877543 333322 23345689999998887766553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-05 Score=67.73 Aligned_cols=188 Identities=14% Similarity=0.057 Sum_probs=120.7
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEE-eccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
..++++|+.-+...+|...+.+.... ..+.... ....+-.|. ....+..++.|.+++++++..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~-----v~~~~r~cd-----------~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNND-----VTLVKRYCD-----------LKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccc-----hhhhhhhcc-----------cccceeeccCCcceeEEEEec
Confidence 44567777789999999987763222 2111000 000011111 111367789999999999964
Q ss_pred CCCceeeeecCccC--eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 241 PGIPLTAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 241 ~~~~~~~~~~h~~~--v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
... ....|... +..+.+++++..+++-+....|-+|.++..........+ ....+.-.+.+|+.....+|.+..
T Consensus 148 ~s~---~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 148 DSN---KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred Ccc---cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEec
Confidence 322 22335443 788889998888888899999999999876544332222 222344567889999989999999
Q ss_pred CCeEEEEEccCCe-EE----EEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecC
Q 017296 319 DRRVRIYNYRKGS-AL----AILKYHHATCNAVSFSSDCK--LMASASEDSTVALWEL 369 (374)
Q Consensus 319 dg~v~iwd~~~~~-~~----~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~ 369 (374)
||++.|||++... ++ .+-..|.+++..+.|+|-|. +|+..-.=+.+.+-|+
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 9999999997643 22 22345788999999998664 4444333344444443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-05 Score=75.71 Aligned_cols=132 Identities=17% Similarity=0.109 Sum_probs=86.3
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE-EEecCC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
..|.+||+.... ...+..+...+.+..|+|++..++ +.+.++ .|.+||++..... .+..+........|+
T Consensus 214 ~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----RLTNGPGIDTEPSWS 286 (417)
T ss_pred cEEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----ECCCCCCCCCCEEEC
Confidence 579999997532 233344555667788999988775 444444 5777887643211 111222223456899
Q ss_pred CCCCEEEEEeC-CC--eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC---cEEEecCC
Q 017296 308 PDSKIAATAGW-DR--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~---~v~~W~~~ 370 (374)
||++.|+..+. ++ .|.++|+.+++. ..+..+...+...+|+|||++|+.++.++ .|.+|++.
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 99998876554 33 577778776653 34444556677889999999999888776 67777764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.8e-05 Score=69.50 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=149.9
Q ss_pred CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCce--ee
Q 017296 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL--TI 106 (374)
Q Consensus 29 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~--~~ 106 (374)
.+..++.++.++.+..+|..+|+.+=............. .++..++.++.|+.+..+|..+|+..-+... ..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG------ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE------EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCcee
Confidence 467888888899999999988886533232222111111 1346777888889999999988865311000 00
Q ss_pred eecc-eeeeeeeeeccccccccccCCCCcccccccCc-eeecCCCCCC-----CCCCCCCCCceEEEcccCCCeEEEEec
Q 017296 107 KTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDS-----KDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~i~vWd~ 179 (374)
.... .....+.... ......+.+.+.+. .+........ .......+ . .++.+..++.+..+|+
T Consensus 138 ~~~p~v~~~~v~v~~--------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~-~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 138 LSPPLVANGLVVVRT--------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-G-GVLVGFAGGKLVALDL 207 (377)
T ss_pred ecCCEEECCEEEEEC--------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-C-EEEEECCCCEEEEEEc
Confidence 0000 0000000000 00000111111111 0110000000 00000011 1 2445666789999999
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEE
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS 259 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~ 259 (374)
++|+.+-...-.......... ........ ... .. ..++.++.+|.+..||+++. ..+-... ........
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~-~~~~~~~~--p~~---~~--~~vy~~~~~g~l~a~d~~tG-~~~W~~~--~~~~~~p~ 276 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELE-RLVDVDGD--PVV---DG--GQVYAVSYQGRVAALDLRSG-RVLWKRD--ASSYQGPA 276 (377)
T ss_pred cCCCEeeeeccccCCCCCchh-hhhccCCc--cEE---EC--CEEEEEEcCCEEEEEECCCC-cEEEeec--cCCccCce
Confidence 999865433211000000000 00000000 000 01 14777888999999999753 2222111 11111222
Q ss_pred EecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 260 IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 260 ~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
+. +..++.++.||.+..+|.... ....... ........+..+ .+..|+.++.+|.+.++|..+++.+..++.+
T Consensus 277 ~~--~~~vyv~~~~G~l~~~d~~tG--~~~W~~~-~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 277 VD--DNRLYVTDADGVVVALDRRSG--SELWKND-ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred Ee--CCEEEEECCCCeEEEEECCCC--cEEEccc-cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 22 235677888999999998643 3222211 001111111122 3567888999999999999999999888766
Q ss_pred CCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 340 HATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
...+..-....++ .|..++.||.|..+
T Consensus 350 ~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 350 GSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCccccCCEEECC-EEEEEeCCceEEEe
Confidence 6444332222344 47778889998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=81.51 Aligned_cols=88 Identities=18% Similarity=0.369 Sum_probs=68.2
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce-eeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
+....++.++.||.++|++++|.+-..+|+||..|..+.+||+.-.+. ...+++|.. .+..+..-. .-.+++|++
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~--~t~~l~S~~ 259 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQ--HTRQLISCG 259 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhh--hheeeeecc
Confidence 456689999999999999999999999999999999999999854432 234455543 344333322 236899999
Q ss_pred ccCeEEEEecCCC
Q 017296 84 RDGTVKCWDIENG 96 (374)
Q Consensus 84 ~D~~vrvwd~~~~ 96 (374)
.||.|-+||++..
T Consensus 260 edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 260 EDGGIVVWNMNVK 272 (404)
T ss_pred CCCeEEEEeccce
Confidence 9999999999764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.4e-08 Score=79.47 Aligned_cols=139 Identities=22% Similarity=0.333 Sum_probs=88.4
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE-----EEecCCCceEEEe-----cCCeEEEEEcCCCCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-----SIDESCNGGISGG-----ADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~-----~~~~~~~~~~s~s-----~D~~i~lwd~~~~~~~~~~~~ 292 (374)
.+++++.||.+-+++.++ . ++ ++ |..+...+ ++-..+..+.+++ .-+..+.|+++..+- +..
T Consensus 103 ~V~~~~~dg~~~v~s~~~-~--~~-~~-~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~ 174 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDK-D--LA-LM-SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---LIP 174 (319)
T ss_pred ceEecCCCceEEEEechH-H--Hh-hh-hhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc---ccc
Confidence 378899999999999864 1 11 11 22222111 1111122222221 133456676653321 111
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEccCCe-EEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 293 EINLERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
... ....+.+++-+|..+ ++++|+.||.+.+||.+... +...+..|+..++-+-|+| +++.|+++|+||.+--||.
T Consensus 175 ~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 175 SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 111 123488899999654 56789999999999997653 3345789999999999999 5569999999999999987
Q ss_pred C
Q 017296 370 Y 370 (374)
Q Consensus 370 ~ 370 (374)
.
T Consensus 254 s 254 (319)
T KOG4714|consen 254 S 254 (319)
T ss_pred C
Confidence 5
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=80.35 Aligned_cols=144 Identities=13% Similarity=0.177 Sum_probs=100.3
Q ss_pred EEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC-CeEEEEEeeecCCCCeEEE
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST-GSCVIKKEINLERPGISGT 304 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~~ 304 (374)
+.+.+..|-+-|+++.. .+.+. ....|.++.|....+.+..|...|.|...|++... |.. .....-.|.+.|+++
T Consensus 229 s~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQRLYHDSSVTSL 304 (425)
T ss_pred cccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-cceEEEEcCcchhhh
Confidence 34446677777876532 12222 45678888887777778889999999999997541 110 001112366677777
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEccCCeE---EEEecccCCceEEEE--EeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 305 SIRP-DSKIAATAGWDRRVRIYNYRKGSA---LAILKYHHATCNAVS--FSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 305 ~~sp-~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~h~~~v~~v~--~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
..-. +++++.+.+.+|+|++||++--++ +.++.+|.+.-.-+- ..+....+++++.|...|||.+..+|
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 6544 677788888999999999976665 778889986443333 44666789999999999999998655
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00011 Score=67.56 Aligned_cols=133 Identities=13% Similarity=0.227 Sum_probs=87.8
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.+.||.++....|+..+. -.++|...++.|.+.-++.-+. -.++.+|-++....+..+..++.. ...+.+.|+|
T Consensus 426 n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP 502 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP 502 (698)
T ss_pred eEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC
Confidence 578888887666654432 4678888899998887765433 468889988743333333333322 3477899999
Q ss_pred CCCEEEEEeC---CCeEEEEEccC--CeEEEEecccCCceEEEEEeCCCCEEEEEeC------CCcEEEecC
Q 017296 309 DSKIAATAGW---DRRVRIYNYRK--GSALAILKYHHATCNAVSFSSDCKLMASASE------DSTVALWEL 369 (374)
Q Consensus 309 ~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~las~s~------D~~v~~W~~ 369 (374)
.|++|+.+.. .|.+.++|..- -+.... ..|. .-+.+-|.|.|+|++|+|. |.--+||++
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhccC-cccc-ccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 9999876654 68899998863 222221 2244 3456899999999999874 444455554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-05 Score=72.81 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=51.6
Q ss_pred EEEEEecCCCceEEEec-CCeEEE--EEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CCe--EEEEEccC
Q 017296 256 LCLSIDESCNGGISGGA-DQKIVL--YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DRR--VRIYNYRK 329 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~-D~~i~l--wd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~--v~iwd~~~ 329 (374)
....++|++..++..+. ++...+ +|++.. .... +... .......|+||++.|+-... ++. +.+++. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g--~~~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG--AMQV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC--CeEE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 34678888887766544 444444 555433 2211 1111 11123479999998765444 443 666676 5
Q ss_pred CeEEEEecccCCceEEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp 350 (374)
++....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 666666766666777788887
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.7e-06 Score=69.59 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=90.4
Q ss_pred eEEEEEecCCcEEEEeccCCC-CceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 222 VNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
..++++-.+|.+.+-+..... ...+..+.|.-+.....|+. +.+.+++||.|+.+..||++-. ..+... ..+.|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-~~~i~~-n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-KTFIWH-NSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC-cceeee-cceeeec
Confidence 347888888888854433211 23446788999999999953 3346789999999999999832 344433 2345667
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEEccC-CeEEEEecccCCceEEEEEeCC
Q 017296 300 GISGTSIRP-DSKIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 300 ~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
+|.++.-+| .+.+|++|+.|-.|++||.+. ++++..-. -.+.|+.+.++|.
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence 899988775 678999999999999999985 45553222 3367888888773
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-05 Score=71.48 Aligned_cols=110 Identities=8% Similarity=0.022 Sum_probs=59.8
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC-C--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D-~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.|.++|+.... ...+...........++|++..++..+.+ + .|.++|++......+ . . ........|+|
T Consensus 312 ~iy~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t-~----~~~~~~p~~sp 383 (430)
T PRK00178 312 QIYKVNVNGGR--AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-T-D----TSLDESPSVAP 383 (430)
T ss_pred eEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-c-C----CCCCCCceECC
Confidence 45556664322 22222222223345678888877665543 3 577788765432111 1 1 11122458999
Q ss_pred CCCEEEEEeCC-C--eEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 309 DSKIAATAGWD-R--RVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 309 ~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
||+.++-++.+ + .+.+.+.. ++....+..+.+.+...+|+|
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 99998765543 3 45566663 444445555556677777876
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00025 Score=65.74 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=98.8
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.+..++.+..||.++++.+-........ ...... ... .. ..+ .++.++.+|.+..+|+++... +-
T Consensus 150 v~~~~g~l~a~d~~tG~~~W~~~~~~~~----~~~~~~--~sp---~~---~~~--~v~~~~~~g~v~ald~~tG~~-~W 214 (377)
T TIGR03300 150 VRTNDGRLTALDAATGERLWTYSRVTPA----LTLRGS--ASP---VI---ADG--GVLVGFAGGKLVALDLQTGQP-LW 214 (377)
T ss_pred EECCCCeEEEEEcCCCceeeEEccCCCc----eeecCC--CCC---EE---ECC--EEEEECCCCEEEEEEccCCCE-ee
Confidence 3455789999999999876554321100 000000 000 00 011 467788889999999875422 21
Q ss_pred eee-----cCcc--C---e-EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 247 AMK-----VHLE--P---V-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 247 ~~~-----~h~~--~---v-~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
... +... . + ....+. +..++.++.+|.+..+|.+.. ........ ....... ..+..++.
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG--~~~W~~~~----~~~~~p~--~~~~~vyv 284 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSG--RVLWKRDA----SSYQGPA--VDDNRLYV 284 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCC--cEEEeecc----CCccCce--EeCCEEEE
Confidence 110 0000 0 0 011122 235677888999999998643 33322221 1111112 24556777
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCC-ceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++.||.+..+|..+++.+.....-.. ...+... .+..|+.++.||.|.+++...+
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 88899999999999987765432111 1222222 4568888899999999987654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-06 Score=69.35 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=98.7
Q ss_pred EEEEEecCCcEEEEeccCCCC--ceeeeecCcc---CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGI--PLTAMKVHLE---PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~--~~~~~~~h~~---~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++-+..+|.|.+|....... -+..+..-.- ...++.|++.+..++++-.+|.+..-+... .........+.|
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~vq~wk~H 164 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKVQTWKVH 164 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeeeeccccccc
Confidence 356677789999987643211 1111111111 234555667777777777788887443321 111111256677
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCeEEEEEcc-CCeEEEE-ecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecCC
Q 017296 298 RPGISGTSIRP-DSKIAATAGWDRRVRIYNYR-KGSALAI-LKYHHATCNAVSFSS-DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 298 ~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~-~~~~~~~-~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~~ 370 (374)
+..++-+.|+- +..++.+||.|+.+.-||++ .++++.. .+-|...|.++.-+| ++.+||||+-|-+|++||..
T Consensus 165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 77788888875 45688999999999999998 4566655 567888999998886 56699999999999999874
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-05 Score=67.07 Aligned_cols=294 Identities=14% Similarity=0.137 Sum_probs=157.3
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceee-eccccCeEEEEecCCCCCCCC
Q 017296 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~vrvwd~~~~~~~~~ 101 (374)
-.+|+|+|+++++.+.- .+.|-|.++-+...-+. .-..++=+.+.. +.-+++ ....|+.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpe---- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---CLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPE---- 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---HHHHhhheeeec--cceeeeeeeeccceEEEEEeecce----
Confidence 46899999999999864 88889987765322111 111223233433 223344 45678899999997532
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~ 181 (374)
..|++.-.. ... . .....++++.++..+.-+-.|.||.+.+
T Consensus 83 ----------w~ckIdeg~--agl--------s-------------------~~~WSPdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 83 ----------WYCKIDEGQ--AGL--------S-------------------SISWSPDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred ----------eEEEeccCC--Ccc--------e-------------------eeeECCCcceEeeeecceeEEEEEEecc
Confidence 122221100 000 0 0011233445566667788999999988
Q ss_pred CceeEEeccCccCCCCCcCCCCCcceeEE-------------------EeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAV-------------------QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+...--....+.-...|..+++-+.+.. ..|..+. .+..-+==+=+++.+.+||---
T Consensus 124 ~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVwd~~L-- 200 (447)
T KOG4497|consen 124 QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVWDNVL-- 200 (447)
T ss_pred ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEecchh--
Confidence 66432221111110011111111111000 0000000 0000000012345577787421
Q ss_pred CceeeeecCc-cCeEEEEEecCCCceEEEecCCeEEEEE-----cC----------CCC--------Ce-------EE--
Q 017296 243 IPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYN-----LD----------HST--------GS-------CV-- 289 (374)
Q Consensus 243 ~~~~~~~~h~-~~v~~~~~~~~~~~~~s~s~D~~i~lwd-----~~----------~~~--------~~-------~~-- 289 (374)
....+..|. -.+..++++|-++.++.|+.|+.+|+-| .= ..+ .. ++
T Consensus 201 -eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 201 -EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred -hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 122233444 4688888999888899999999998843 10 000 00 00
Q ss_pred ----------------------------EEE--eeecCCCCeEEEEECCCCCEEEEEeCC--CeEEEEEccCCeEEEEec
Q 017296 290 ----------------------------IKK--EINLERPGISGTSIRPDSKIAATAGWD--RRVRIYNYRKGSALAILK 337 (374)
Q Consensus 290 ----------------------------~~~--~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~ 337 (374)
+++ .......++.-++|++|..|+++-... .-+.+||++..+....+.
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi 359 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI 359 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh
Confidence 000 000112346679999999998876543 468999998766554443
Q ss_pred ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 338 YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
....|....|.|....|+-+.....+++|...
T Consensus 360 -Qk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 360 -QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -hccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 45678889999988877776666778888654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-05 Score=79.59 Aligned_cols=148 Identities=9% Similarity=0.114 Sum_probs=98.5
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec---------------CccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV---------------HLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~ 286 (374)
.+++.+.++.|++||..... ...+.+ .......+++++++.. +++.+.++.|++||++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred EEEEECCCCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 45667788999999986432 111111 1123456889988764 45667789999999874321
Q ss_pred eEEEEE---------eee--------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-------------
Q 017296 287 SCVIKK---------EIN--------LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL------------- 336 (374)
Q Consensus 287 ~~~~~~---------~~~--------~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~------------- 336 (374)
...... ... .....-..++|+|+|.++++-..+++|++||..++......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 111000 000 00012357899999998888889999999999876544221
Q ss_pred cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 337 KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 337 ~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+.-.....|+++++|+++++-+.+++|++|++...
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 112235778999999999999999999999998643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.4e-05 Score=71.73 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=80.8
Q ss_pred cEEEEeccCC--CCceeeeecCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCC--CCCeEEEEEeeecCCCCeEEEEE
Q 017296 232 SILVWDIRNP--GIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDH--STGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 232 ~i~iwdl~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~--~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
.+.+|++... +.+......+........|+|++..++..+ .+|...+|.++. ..+.. ..+......+....|
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~w 334 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPAW 334 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---EEeccCCCCccceeE
Confidence 4555776542 222222222223345678999998777655 467666665432 21111 112222234567899
Q ss_pred CCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe-C--CCcEEEecCCC
Q 017296 307 RPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-E--DSTVALWELYP 371 (374)
Q Consensus 307 sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~--D~~v~~W~~~~ 371 (374)
||||+.|+..+.+ ..|.+||+.+++.. .+......+....|+|||+.|+..+ . ...|.+|++..
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999988765543 46899999887654 3433344567789999999776443 2 34577777653
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.2e-06 Score=70.45 Aligned_cols=139 Identities=17% Similarity=0.316 Sum_probs=94.4
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+-..+.|+.|.+|++..+.- ...++....++..++++|+++.+ .+...|-.|.+|.+....+... ......+.
T Consensus 64 lC~~yk~~~vqvwsl~Qpew-~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-----~~pK~~~k 137 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEW-YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-----PHPKTNVK 137 (447)
T ss_pred eeeeeccceEEEEEeeccee-EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-----cccccCce
Confidence 44578899999999976542 33455667899999999999665 4566788999999976543322 22334567
Q ss_pred EEEECCCCCEEEEEeCCC---eEEE-----E------Ecc-----------CCeEE---------EEecccC-CceEEEE
Q 017296 303 GTSIRPDSKIAATAGWDR---RVRI-----Y------NYR-----------KGSAL---------AILKYHH-ATCNAVS 347 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg---~v~i-----w------d~~-----------~~~~~---------~~~~~h~-~~v~~v~ 347 (374)
.++|+|||++++..+.-. .+.| | ++. +|.-+ +.+..|. -.+..++
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVE 217 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEE
Confidence 889999999887665421 1111 1 111 11112 2233344 4688899
Q ss_pred EeCCCCEEEEEeCCCcEEEec
Q 017296 348 FSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~ 368 (374)
|+|.+++||.|+.|+.+|+-|
T Consensus 218 wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eccccceEEeeccchhhhhhc
Confidence 999999999999999998743
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=74.34 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=105.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec--C-ccCeEEEEE----ecC----------------CCceEEEecCCeEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV--H-LEPVLCLSI----DES----------------CNGGISGGADQKIVLY 279 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~--h-~~~v~~~~~----~~~----------------~~~~~s~s~D~~i~lw 279 (374)
+++....||.+|+||..++. ..+.+.. | .+..++..+ +.. -..++-|-..|.|.++
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred eEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 57778889999999987632 2222211 1 122222222 111 0123556778899999
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
++... .......-..|...+.++..+.+-..|.|++.|+.+..|+..+.+.+..++.....+.++..+|||+.|++||
T Consensus 86 s~~~g--~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 86 SVAGG--EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EecCC--eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 88643 3333334456777899999999999999999999999999999998888888889999999999999999998
Q ss_pred CCCcEEEecCCCC
Q 017296 360 EDSTVALWELYPP 372 (374)
Q Consensus 360 ~D~~v~~W~~~~~ 372 (374)
+.|++|++.+.
T Consensus 164 --~~ik~~~~~~k 174 (541)
T KOG4547|consen 164 --RQIKVLDIETK 174 (541)
T ss_pred --ceEEEEEccCc
Confidence 88999998754
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-06 Score=76.43 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=74.3
Q ss_pred EecCCcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC----CCeEE--EE-----Eee
Q 017296 227 GYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS----TGSCV--IK-----KEI 294 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~----~~~~~--~~-----~~~ 294 (374)
...+|.|.++|-+...++ ...-+-|..||.++...+.+...++....|.|.-|..+.. ..... +. ...
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 345677888886543322 3333459999999999998888888888899999998730 00000 00 000
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 295 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 295 ~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
........++.|+|++..++.-+.|.+|++++.++++.+
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 011123568999999999999999999999999987643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-05 Score=70.75 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred EEEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.+++.+.+|. |.++|+... ....+..+........|++++..++..+. ++...+|-++..++.... +.....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~~g~ 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR---LTFEGE 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---EecCCC
Confidence 3445566665 666677542 23445445555667788998887765553 444444433322222211 111222
Q ss_pred CeEEEEECCCCCEEEEEeC-CCe--EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe-CCCc--EEEecC
Q 017296 300 GISGTSIRPDSKIAATAGW-DRR--VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-EDST--VALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~--v~~W~~ 369 (374)
.....+|+|||++|+..+. ++. |.++|+.+++.. .+.... ......|+|||+.|+..+ .++. +.+++.
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2345689999999876554 443 455677766542 333221 122347999999877654 3443 444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-05 Score=75.52 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=65.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
..-++|+||.+.|.-+.|+.....|-|+..+|.|.||-+..|.....+.......-+++++|.. +|.++.....||.|
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAV 139 (1189)
T ss_pred chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCE
Confidence 3457899999999999999999999999999999999998887654433333333455666655 67788788888887
Q ss_pred EEEecCCC
Q 017296 89 KCWDIENG 96 (374)
Q Consensus 89 rvwd~~~~ 96 (374)
.+=.++.+
T Consensus 140 IVGsvdGN 147 (1189)
T KOG2041|consen 140 IVGSVDGN 147 (1189)
T ss_pred EEEeeccc
Confidence 77666544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00048 Score=62.16 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=67.4
Q ss_pred EEEEEecCCcEEEEeccCCC----Cceeeeec-------CccCeEEEEEecCCCceEEEe----------cCCeEEEEEc
Q 017296 223 NVLAGYEDGSILVWDIRNPG----IPLTAMKV-------HLEPVLCLSIDESCNGGISGG----------ADQKIVLYNL 281 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~----~~~~~~~~-------h~~~v~~~~~~~~~~~~~s~s----------~D~~i~lwd~ 281 (374)
.+...++ |+|.+-|+.... .+...+.. ......-+++++++..++... ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 3444444 999999964321 11111111 122333488888777665532 1246888877
Q ss_pred CCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEEccCCeEEEEec
Q 017296 282 DHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAILK 337 (374)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~~ 337 (374)
... +... .+.. ...+..++|+||++ +|+... .++.|.+.|..+++.++.+.
T Consensus 287 ~t~--kvi~--~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 287 KTG--KRLR--KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCC--eEEE--EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 543 3222 2221 23688999999999 777666 57899999999999888873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00056 Score=71.27 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=72.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceee------------ee--------cCccCeEEEEEecCCCceEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTA------------MK--------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~------------~~--------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~ 282 (374)
.+++-+.++.|++||+......... +. ........+++++++..+++.+.+++|++||.+
T Consensus 754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 4566778899999998753311100 00 001123578889888878888899999999986
Q ss_pred CCCCeEEEEEe----------eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE
Q 017296 283 HSTGSCVIKKE----------INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 283 ~~~~~~~~~~~----------~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~ 332 (374)
....... ... ....-.....++++|+|+++++-+.+++|++||+.+++.
T Consensus 834 tg~v~ti-aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 834 TKRVTTL-AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCeEEEE-eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 4321111 100 011112456899999999989888999999999988754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-05 Score=66.63 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=97.7
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE---EEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL---SIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~---~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.++.|+..|...+|.+.+...-++....|...|.-+ +... --+..++.|.++++.+++....+... ....-
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~----h~~~~ 159 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAV----HNQNL 159 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCccccee----ecccc
Confidence 477888999999999875444444455555433322 1111 12467889999999999765432221 11112
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCC-eEE-E-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SAL-A-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~-~~~-~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...+++++||++++++-+.-..|.+|.+... +-+ . ....-+..-.+..|+.+...+|.+++||++.|||+.
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 3678999999999999999999999988543 222 2 122223445677899999999999999999999984
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0002 Score=67.63 Aligned_cols=135 Identities=15% Similarity=0.103 Sum_probs=77.9
Q ss_pred EEEEecCC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++.+.+| .|.+||+... ....+..+........|++++..++..+. ++ .|.++|++....... ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-----t~~~ 330 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-----TFVG 330 (430)
T ss_pred EEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----ecCC
Confidence 33444454 5777888653 23445445545566788888887765553 33 466666654321111 1111
Q ss_pred CCeEEEEECCCCCEEEEEeCC-C--eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-CcEEEe
Q 017296 299 PGISGTSIRPDSKIAATAGWD-R--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-STVALW 367 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W 367 (374)
.......|+||+++|+....+ + .|.+||+.+++.. .+. +........|+|||+.|+.++.+ +.-+||
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 223456899999998866543 3 4788898877542 332 22222345899999988766543 333333
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00016 Score=66.56 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=79.3
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++-|..--.+.|||++. .++.. .-..+=+++-|+|.++.++.+|- .|.|.+||+... +++. . .....
T Consensus 287 VvyGfMPAkvtifnlr~--~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~--~--~~a~~ 356 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRG--KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLIA--K--FKAAN 356 (566)
T ss_pred EEEecccceEEEEcCCC--CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhcc--c--cccCC
Confidence 44577788899999973 34433 35678888999999998887775 479999998642 2221 1 12234
Q ss_pred eEEEEECCCCCEEEEEeC------CCeEEEEEccCCeEEEEecccCC-ceEEEEEeC
Q 017296 301 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAILKYHHA-TCNAVSFSS 350 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp 350 (374)
.+-..|+|||++++++.. |+.++||+. +|+.+.. .+.. ..+.+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~--~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE--KMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh--hhhhHhHhheeeee
Confidence 566789999999987775 789999998 5766642 2333 366667765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-06 Score=71.88 Aligned_cols=143 Identities=24% Similarity=0.359 Sum_probs=93.3
Q ss_pred EEEEEecCCcEEEEeccCCCCce--------------ee---------------------eecCccCeEEEEEecCCCce
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPL--------------TA---------------------MKVHLEPVLCLSIDESCNGG 267 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~--------------~~---------------------~~~h~~~v~~~~~~~~~~~~ 267 (374)
.++...+|.+|++|-+...+... +. -..|+--|++++++.+...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 46677889999999885421100 00 02466678888888777665
Q ss_pred EEEecCCeEEEEEcCCCCCeEEEEEeeecC-----CCCeEEEEECCC-CCEEEEEeCCCeEEEEEccCCeE------EEE
Q 017296 268 ISGGADQKIVLYNLDHSTGSCVIKKEINLE-----RPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSA------LAI 335 (374)
Q Consensus 268 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~------~~~ 335 (374)
+++ .|=.|.||+++-..+..-.. .++-+ ..-|++..|||. ..+++=.+..|+|++-|++.... +..
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eec-cceeeeeccccccCCceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 554 67899999997654433322 11111 123778899995 44555566789999999974211 100
Q ss_pred ----------ecccCCceEEEEEeCCCCEEEEEeCC-CcEEEecC
Q 017296 336 ----------LKYHHATCNAVSFSSDCKLMASASED-STVALWEL 369 (374)
Q Consensus 336 ----------~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W~~ 369 (374)
+..--..|+.+.|+.+|++++| .| .+|++||+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~ 300 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDL 300 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEec
Confidence 0111246888999999999986 45 89999998
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00019 Score=67.50 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=79.0
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-----CCeEEEEEcCCCC-CeEEEEEeeecCCCCeEEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-----DQKIVLYNLDHST-GSCVIKKEINLERPGISGT 304 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-----D~~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~~ 304 (374)
..|.+.++.... ...+...........|+|++..++..+. |-.+.+|+++... +... .............
T Consensus 211 ~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~--~lt~~~~~~~~~p 286 (428)
T PRK01029 211 PKIFLGSLENPA--GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPR--RLLNEAFGTQGNP 286 (428)
T ss_pred ceEEEEECCCCC--ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcce--EeecCCCCCcCCe
Confidence 457777776432 2223223344456788999988775542 3344556765321 1111 1111111223567
Q ss_pred EECCCCCEEEEEe-CCCeEEEEEc--cC-CeEEEEecccCCceEEEEEeCCCCEEEEEeCC---CcEEEecCCC
Q 017296 305 SIRPDSKIAATAG-WDRRVRIYNY--RK-GSALAILKYHHATCNAVSFSSDCKLMASASED---STVALWELYP 371 (374)
Q Consensus 305 ~~sp~~~~l~s~~-~dg~v~iwd~--~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---~~v~~W~~~~ 371 (374)
+|+|||+.|+..+ .+|...+|.+ .. +.....+..+...+....|||||++|+..+.+ ..|.+|++..
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 9999999877555 4676666654 21 23334454455567788999999988876543 3578888754
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.9e-06 Score=70.35 Aligned_cols=127 Identities=23% Similarity=0.296 Sum_probs=88.0
Q ss_pred EEEEEecCCcEEEEeccCC----CCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC-eEEEEEeeec
Q 017296 223 NVLAGYEDGSILVWDIRNP----GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG-SCVIKKEINL 296 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~----~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~ 296 (374)
.+..|..+|.|...|+|.. +.+.+ .-.|...|+++.+-. +.+.+++.+-+|.|+|||++.-.. +-+...+-..
T Consensus 266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred eeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 5778999999999999864 22222 346899999998844 667788888999999999974322 1122222111
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc----CCceEEEEEeC
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH----HATCNAVSFSS 350 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h----~~~v~~v~~sp 350 (374)
....-.-+.+.|....|+++|.|-.-|||.++++..+.+++.. +..+++++|..
T Consensus 345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 1111223445677888999999999999999999988877633 23566677653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=68.58 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=75.0
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
.+...+.+|...+ .+...+-||...++.+++.++...++++..|..||+=.... ......-.-+|...|..+++-
T Consensus 129 gD~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 129 GDVYSFDILSADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CCceeeeeecccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc---ccchhhhccccHhheeeeeec
Confidence 3445556665543 23445669999999999999999999999999999965431 111111122466788999988
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 308 PDSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
++. .|+|||.|+++++||+.+|+.+.++
T Consensus 204 ~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 204 DNY-LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cCc-eeeecCCCCcEEEEecccCCccccc
Confidence 764 5899999999999999999876544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-05 Score=74.32 Aligned_cols=221 Identities=19% Similarity=0.248 Sum_probs=119.4
Q ss_pred CCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccce-eeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+--.++.||..+|+.+-|+++. ..|++.+.|..|-.||+.+... +.....-. .+...+.+.. .+.+.+++ +-..
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwny-k~p~vlas-shg~ 180 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNY-KDPNVLAS-SHGN 180 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeecc-cCcchhhh-ccCC
Confidence 4457899999999999999865 5799999999999999877553 33222111 1223344443 23455543 3345
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-|++||.+.|.. |...++. |...+ +...+.. ++ .-.+.
T Consensus 181 ~i~vwd~r~gs~---pl~s~K~---~vs~v--------n~~~fnr-----------------~~-----------~s~~~ 218 (1081)
T KOG0309|consen 181 DIFVWDLRKGST---PLCSLKG---HVSSV--------NSIDFNR-----------------FK-----------YSEIM 218 (1081)
T ss_pred ceEEEeccCCCc---ceEEecc---cceee--------ehHHHhh-----------------hh-----------hhhhc
Confidence 699999988742 2222222 11000 0000000 00 01234
Q ss_pred cccCCCeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+.+.|++|+.||-.... ...+...+.......+.+-+.++|+-.+ .|...+..---++....|+......+
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~-------~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM-------VGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred ccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc-------cCCeeeeeccccchhhhhccccCCcc
Confidence 56678999999865432 1111111111111122222333332110 11111111122344455665555668
Q ss_pred eeeeecCccCeEEEEE--------e--cCCCceEEEecCCeEEEEEcC
Q 017296 245 LTAMKVHLEPVLCLSI--------D--ESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~--------~--~~~~~~~s~s~D~~i~lwd~~ 282 (374)
+.++.||.+.|...-+ | -..-+|+|=|.|.++|+|-++
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 8999999988766544 1 112257999999999999875
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=67.57 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
..+.+.+++|+...++.|+.||.|.+||...+-.. +..+.-.+..++|+|+|..++.|+.-|.+.+||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 46889999999999999999999999998765322 3334556788999999999999999999999997
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0013 Score=59.74 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC-eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
-|...+++... ..... -+|...|....+..+...++.|..|| .+-++|.++.. .+.+...-..|.++..+|
T Consensus 340 RGkaFi~~~~~--~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 340 RGKAFIMRPWD--GYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred cCcEEEECCCC--CeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcC
Confidence 56677766532 12222 25677788888866656788999999 99999987542 122233345689999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc----EEEecCC
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST----VALWELY 370 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~----v~~W~~~ 370 (374)
+|++++.+.....+.+.|+.+++..-.-+.-.+-|...+|||+++++|-+=.+|. |+++++.
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 9999999988889999999998865444455678999999999999998766654 5566553
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.3e-06 Score=76.50 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=87.0
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC---CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST---GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
.+..+.||++.|+.+.--.+.+.++++|.|.++++|.++... +.-..+.....|...|.++.|-.+-+++++. ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 355678999999988765556789999999999999996421 1111233456677789999999998888864 99
Q ss_pred eEEEEEccCCeEEEEecc-c-CCceEEEEEeCC--CCE-EEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKY-H-HATCNAVSFSSD--CKL-MASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~-h-~~~v~~v~~sp~--~~~-las~s~D~~v~~W~~~ 370 (374)
-|.+||.--++.+..+.. . ++.+.-+..-|+ ... +|-++...+||++|..
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc
Confidence 999999987877654321 1 123333444443 333 3445899999998753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0016 Score=59.50 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=78.4
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+++|..+-.+-++|++.. .. +.....+=+.+.|+|..++.+.++-| |.|.+||... +........ ...
T Consensus 291 vi~g~~pa~~s~~~lr~N--l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~~--~~n 361 (561)
T COG5354 291 VISGYMPASVSVFDLRGN--LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAFN--GLN 361 (561)
T ss_pred EEecccccceeecccccc--eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEee--cCC
Confidence 667889999999999742 12 23345566778888888888887765 6899998642 233222222 233
Q ss_pred eEEEEECCCCCEEEEEe------CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 301 ISGTSIRPDSKIAATAG------WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
.+-+.|+||++++.++. .|..|+|||+...+ +. ...-+.|-|.|++.-+.|.+.
T Consensus 362 ~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 362 TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh-------hhhhccccCCcccceeeccCC
Confidence 45567999999876554 27789999985322 21 233456666666655555443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00049 Score=57.65 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=52.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~ 282 (374)
.++.|++||.+-+||+|+...+...++.|..++..+-|+|+. ..|.+++.||.+--||..
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 467799999999999998777888899999999999998753 468999999999999874
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0083 Score=52.82 Aligned_cols=284 Identities=12% Similarity=0.137 Sum_probs=149.3
Q ss_pred cCCCceeEEEEeCCCCEEEEecCC---CcEEEEeCc--ccceee--e--eeeeeceeeeEEeccCCccccceeeecc-cc
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTG---GELRIWDTV--QHRTVS--S--SWVHSAAHGIVSVATGPSIGLNKVISQG-RD 85 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D---~~v~vWd~~--~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D 85 (374)
.+.+..+-|+|+++.+.|.++-.+ +.|-.+... +|+... . +.++.. .-++.+ .+++.++++. .-
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p----~yvsvd--~~g~~vf~AnY~~ 110 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP----CYVSVD--EDGRFVFVANYHS 110 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC----eEEEEC--CCCCEEEEEEccC
Confidence 467788899999999999988554 666665543 354211 1 111111 112333 3566777665 45
Q ss_pred CeEEEEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 86 GTVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 86 ~~vrvwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
+.|.+.-++. |.+.. +...+ .+. ...+. ..+.... ++. ..+ .+.++++
T Consensus 111 g~v~v~p~~~dG~l~~-~v~~~-~h~--------g~~p~--~rQ~~~h-----------------~H~-a~~-tP~~~~l 159 (346)
T COG2706 111 GSVSVYPLQADGSLQP-VVQVV-KHT--------GSGPH--ERQESPH-----------------VHS-ANF-TPDGRYL 159 (346)
T ss_pred ceEEEEEcccCCcccc-ceeee-ecC--------CCCCC--ccccCCc-----------------cce-eee-CCCCCEE
Confidence 8999999866 43211 10000 000 00000 0000000 000 012 2334566
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
++..-.-..|.++++..++....-. ... .++. ..+.+ .|.|+ ++...++.--+++|.+|........
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~-~~v--~~G~--GPRHi-----~FHpn---~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADP-AEV--KPGA--GPRHI-----VFHPN---GKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred EEeecCCceEEEEEcccCccccccc-ccc--CCCC--CcceE-----EEcCC---CcEEEEEeccCCEEEEEEEcCCCce
Confidence 6554444579999999765422211 110 0011 11111 24443 2223445666889999998754333
Q ss_pred eeeeecC---------ccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 245 LTAMKVH---------LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 245 ~~~~~~h---------~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
+..++.+ ......+.++++++.|+.+- ....|.++.++..+++..+......+...-+...|+|.+++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 3333321 23566777889998765443 3458999998877666554443333444457889999999988
Q ss_pred EEeCC-CeEEEEEcc--CCeEEEEec-ccCCceEEEEEe
Q 017296 315 TAGWD-RRVRIYNYR--KGSALAILK-YHHATCNAVSFS 349 (374)
Q Consensus 315 s~~~d-g~v~iwd~~--~~~~~~~~~-~h~~~v~~v~~s 349 (374)
+++.| ..|.+|.+. +|+.-.... .......||.|.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77765 568888663 454332222 223344566663
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0011 Score=63.64 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=83.3
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE----------EEecCCeEEEEEcCCCCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI----------SGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~----------s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
.++.|.+.|+|.++|+.+ +.....+..|+..|.++.+-+.. .++ +++.-+.+.+=|++++-.+ .++.
T Consensus 439 LvAvGT~sGTV~vvdvst-~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-~fR~ 515 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVST-NAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-RFRG 515 (1062)
T ss_pred eEEeecCCceEEEEEecc-hhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccccccc-cccc
Confidence 467799999999999975 44456677899999999885432 233 3444566777777643221 1222
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEe
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 349 (374)
..+..+..|+.+..|.-++|++..-.|..+.+||+++...+....-..-.+..+.|+
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 233455679999999999999999999999999997755432221111125555665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=65.87 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=91.2
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
+..-+.||+|+-++++......+....|... ..+-.....++.|+.||.|.+|+.+... .+.-+... ........
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g-~~~d~~~s-~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG-AHSDRVCS-GEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccc-hHHHhhhc-ccccceec
Confidence 4556889999999987543222222223222 1112223446889999999999876221 11100000 01111222
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-CceEEEEEeCCCCEEEEE--eCCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASA--SEDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~--s~D~~v~~W~~~ 370 (374)
+.-..++.+..++++||.||.|+.+..+.+...-+|. ..+.....+..++.|+++ |.|..++.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 2333455678899999999999999888777666677 677777777888899988 999999999874
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.4e-05 Score=46.34 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=35.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd 46 (374)
++...+..|...|++++|++.+.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46778899999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=65.57 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-----CCeEEEEECCCCCE-EEEEeCCCeEEE
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-----PGISGTSIRPDSKI-AATAGWDRRVRI 324 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~-l~s~~~dg~v~i 324 (374)
|.--|++++|..+...++ .+.|=.|.||+++-..+..... .++-|. .-|++..|+|.... +.=.+..|+|++
T Consensus 171 H~yhiNSiS~NsD~et~l-SaDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheee-eccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 555577778866654444 4578899999998665544332 222221 23778899996443 333456899999
Q ss_pred EEccCCe------EEE--Ee--------cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 325 YNYRKGS------ALA--IL--------KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 325 wd~~~~~------~~~--~~--------~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
-|++... .+. ++ ..-...|+.+.|+++|+++++-+ =-+|+|||..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvn 309 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVN 309 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecc
Confidence 9997421 111 11 11234678899999999998754 4689999874
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.8e-05 Score=68.87 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=94.2
Q ss_pred EEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec
Q 017296 223 NVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 296 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 296 (374)
.+++++.|.+|++|.++..+ .+..+.+.|+.+|..+.|-.+.++ .+|.|+.|.+||-=- ++.....+...
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFi--gr~Laq~~dap 824 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFI--GRLLAQMEDAP 824 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeecccc--cchhHhhhcCc
Confidence 48999999999999997432 245567889999999999776654 456799999998421 11110000000
Q ss_pred CCCCeEEE-EECC-CCCEEEEE-eCCCeEEEEEccCCeEEEEec-----ccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 297 ERPGISGT-SIRP-DSKIAATA-GWDRRVRIYNYRKGSALAILK-----YHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 297 ~~~~v~~~-~~sp-~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
....+..+ ++-. +..+++.| +...+|+++|.+.++-...++ +.-+.+.+++..|.|.++|.+=..|+|-+-|
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 11112222 2222 44455556 568899999998876443332 2335688899999999999887778777665
Q ss_pred CC
Q 017296 369 LY 370 (374)
Q Consensus 369 ~~ 370 (374)
..
T Consensus 905 aR 906 (1034)
T KOG4190|consen 905 AR 906 (1034)
T ss_pred cC
Confidence 43
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0017 Score=57.02 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=99.5
Q ss_pred CCcEEEEeccCCCCce--eeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 230 DGSILVWDIRNPGIPL--TAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
+..|..|++.+....+ ..+-.+....+-|+++++.+.|+++-. +|.|.-|.++...|...+..+.......-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 6789999997432222 223346778899999999888877644 58899999987666665554433333444778
Q ss_pred EECCCCCEEEEEeC-CCeEEEEEccC-CeEEE--EecccCCc----------eEEEEEeCCCCEEEEE--eCCCcEEEec
Q 017296 305 SIRPDSKIAATAGW-DRRVRIYNYRK-GSALA--ILKYHHAT----------CNAVSFSSDCKLMASA--SEDSTVALWE 368 (374)
Q Consensus 305 ~~sp~~~~l~s~~~-dg~v~iwd~~~-~~~~~--~~~~h~~~----------v~~v~~sp~~~~las~--s~D~~v~~W~ 368 (374)
++++++++++++.. -|.|.++-++. |.... ....|.+. +....|.|++++|++. +.|. |.+++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEE
Confidence 99999999988775 58999998855 43221 12235555 8889999999999876 5665 55677
Q ss_pred CCCC
Q 017296 369 LYPP 372 (374)
Q Consensus 369 ~~~~ 372 (374)
+.++
T Consensus 174 ~~dg 177 (346)
T COG2706 174 LDDG 177 (346)
T ss_pred cccC
Confidence 7643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=44.19 Aligned_cols=38 Identities=45% Similarity=0.693 Sum_probs=34.0
Q ss_pred eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 331 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0025 Score=59.67 Aligned_cols=174 Identities=12% Similarity=0.044 Sum_probs=90.4
Q ss_pred CCCCceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec--CCcE
Q 017296 158 AEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSI 233 (374)
Q Consensus 158 ~~~~~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~--dg~i 233 (374)
+++++.++++... +..|.++|+.+++...-.... ..... ..+.| ++...+++.+. +..|
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-------------g~~~~-~~~SP---DG~~la~~~~~~g~~~I 259 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-------------GMLVV-SDVSK---DGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-------------CcEEe-eEECC---CCCEEEEEEccCCCcEE
Confidence 4444434443332 467888899888643222110 11111 11322 23333334333 3567
Q ss_pred EEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 234 ~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
.++|+... ....+..+........|+|++..++-.+. .+ .|.+.|++.+..... ... +.....|||||
T Consensus 260 y~~dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-----t~~--g~~~~~~SPDG 330 (419)
T PRK04043 260 YLYDTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-----VFH--GKNNSSVSTYK 330 (419)
T ss_pred EEEECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-----ccC--CCcCceECCCC
Confidence 77787543 23334333332334568898887765553 33 455566654322111 111 11234899999
Q ss_pred CEEEEEeCC---------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 311 KIAATAGWD---------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 311 ~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
++|+-.... ..|.+.|+.+++. ..+... .......|+|||+.|+..+
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEE
Confidence 988755543 2577778877653 334332 2233578999999776554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.023 Score=48.72 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=115.5
Q ss_pred CCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeee
Q 017296 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (374)
Q Consensus 38 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (374)
.+++|..||..+|+.+-............... ..++.+++.++.++.|..||..+|+.. ....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~l~~~d~~tG~~~--------------W~~~ 63 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA---VPDGGRVYVASGDGNLYALDAKTGKVL--------------WRFD 63 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE---EEETTEEEEEETTSEEEEEETTTSEEE--------------EEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE---EEeCCEEEEEcCCCEEEEEECCCCCEE--------------EEee
Confidence 36889999998887654432210011111111 113457777789999999999988421 0000
Q ss_pred eeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCC
Q 017296 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (374)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~ 197 (374)
+ ....... ....+..+++.+ .++.+..+|+++|+.+-...........
T Consensus 64 ~-~~~~~~~-----------------------------~~~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 64 L-PGPISGA-----------------------------PVVDGGRVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp C-SSCGGSG-----------------------------EEEETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred c-cccccce-----------------------------eeeccccccccc--ceeeeEecccCCcceeeeeccccccccc
Confidence 0 0000000 000122233332 4568999999999987764221100000
Q ss_pred CcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC----------e-EEEEEecCCCc
Q 017296 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP----------V-LCLSIDESCNG 266 (374)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~ 266 (374)
.. ...... +. + ..++.+..++.|..+|+++. ..+-.......+ + ..+.+. ++ .
T Consensus 112 -~~---~~~~~~---~~-----~-~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 175 (238)
T PF13360_consen 112 -VR---SSSSPA---VD-----G-DRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-R 175 (238)
T ss_dssp -TB-----SEEE---EE-----T-TEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECC-TT-E
T ss_pred -cc---cccCce---Ee-----c-CEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEE-CC-E
Confidence 00 001111 11 1 24677777999999998763 333333332211 1 222223 22 4
Q ss_pred eEEEecCCe-EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 017296 267 GISGGADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI 335 (374)
Q Consensus 267 ~~s~s~D~~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~ 335 (374)
++.++.++. +.+ |+... ...... .. ..... ...+.+..|+.++.++.+..||+.+++...+
T Consensus 176 v~~~~~~g~~~~~-d~~tg--~~~w~~--~~--~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATG--EKLWSK--PI--SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEECCTSSEEEE-ETTTT--EEEEEE--CS--S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCeEEEE-ECCCC--CEEEEe--cC--CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 566666774 555 77643 322211 11 11222 1345667777777999999999999997754
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.024 Score=48.52 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
..++|..+++||||+.||+...+|++.+|++-.-++...+..+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 4578999999999999999999999999999776666555433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.011 Score=50.43 Aligned_cols=145 Identities=15% Similarity=0.163 Sum_probs=85.5
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec-------CccCeEEEEEec-C-----CCceEEEecCCeEEEEEcCCCC---C
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV-------HLEPVLCLSIDE-S-----CNGGISGGADQKIVLYNLDHST---G 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~-------h~~~v~~~~~~~-~-----~~~~~s~s~D~~i~lwd~~~~~---~ 286 (374)
.++.+...|+|++||+-. ..+..+.. -...|..|.|-+ . ..-|+.-..+|.++-+-+...+ .
T Consensus 57 lLa~a~S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 57 LLAYAESTGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY 134 (282)
T ss_pred EEEEEcCCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc
Confidence 577788999999999953 22222211 124566666621 1 1124455566666666542211 1
Q ss_pred eEEEEEeeec-CCCCeEEEEECCCCCEEEEEeC-CCe----------EEEEEccCCeEEE--------------------
Q 017296 287 SCVIKKEINL-ERPGISGTSIRPDSKIAATAGW-DRR----------VRIYNYRKGSALA-------------------- 334 (374)
Q Consensus 287 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~-dg~----------v~iwd~~~~~~~~-------------------- 334 (374)
+......+.. ...+|.++.++|.-++|+.||. ... +.-|.+.++.+..
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 1111112222 2458999999999888766653 221 3446554332110
Q ss_pred ------Ee---cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 335 ------IL---KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 335 ------~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+ ......|..|..||||+.||+..-+|.|.+|++
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 00 112457889999999999999999999999986
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.024 Score=54.53 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=52.7
Q ss_pred eEEEEECCCCCEEEE-EeCCCeEEEEEccCCeE------------EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 301 ISGTSIRPDSKIAAT-AGWDRRVRIYNYRKGSA------------LAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 301 v~~~~~sp~~~~l~s-~~~dg~v~iwd~~~~~~------------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
...+.+||||++++. +..+.+|.|.|+.+.+. .....- .......+|.++|....|--.|+.|-.|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEE
Confidence 457899999998764 45589999999987542 222221 2344567999999988888999999999
Q ss_pred cCCC
Q 017296 368 ELYP 371 (374)
Q Consensus 368 ~~~~ 371 (374)
|+..
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 9853
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.01 Score=57.29 Aligned_cols=194 Identities=10% Similarity=0.134 Sum_probs=115.0
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
..+++++...|.|-+||...+.....+.++. .....+|. .+........+++-+...+|-+|+..++
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--------~~~qdl~W-----~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSN--------DSVQDLCW-----VPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCC--------cchhheee-----eeccCcchheeEEecCCcEEEEEEccCC
Confidence 4566777778889999988776655554431 11122221 1222223345666777889999987653
Q ss_pred CCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCC-----CCeEEEEEee--------------ecCCC--
Q 017296 242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHS-----TGSCVIKKEI--------------NLERP-- 299 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~-----~~~~~~~~~~--------------~~~~~-- 299 (374)
..+=...+..+...|+.+|| +...+..-+..|.+-+-+.-.. .++......- +.+..
T Consensus 146 -~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 146 -EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred -ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 33433445566777788876 3333333333444433332111 1111111000 00000
Q ss_pred -------CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecC
Q 017296 300 -------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWEL 369 (374)
Q Consensus 300 -------~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~ 369 (374)
....++|+|--+-++-...-+.+.++|++-..++.+..-..+.+.-+.+-|+++ .|+..-.||.+.||--
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 012367788766666566788999999988788887766667777888888775 7888999999999953
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=63.50 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=91.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++-|+-+|.|.+++.. +.+ .+...|... +.+|.+++|+|.||.+.+-.+......+.. ..+ ..+.
T Consensus 51 ~~~~GtH~g~v~~~~~~--~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~----df~-rpik 116 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQ--GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY----DFK-RPIK 116 (846)
T ss_pred eeeeccccceEEEEecC--Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE----ecC-Ccce
Confidence 46779999999999874 333 444445444 667888999999999999887654433322 222 3588
Q ss_pred EEEECCC-----CCEEEEEeCCCeEEEEEccC-C-eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 303 GTSIRPD-----SKIAATAGWDRRVRIYNYRK-G-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~-----~~~l~s~~~dg~v~iwd~~~-~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+++++|+ .+.+++||.-| +-++...= + +.-..+...+++|.++.| .|.++|=++.+| |+++|.-
T Consensus 117 sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 117 SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEecc
Confidence 9999998 56789999888 66654321 1 111245666789999999 677999888666 7888763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.04 Score=48.42 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 299 PGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
..+-++++++++.+++.++ .-+.+.+||..+++.+.... -..+..++-.+++ +++|.+.-.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCcc
Confidence 4588999999998886555 56889999999999876543 2345566666665 777766544
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0017 Score=63.50 Aligned_cols=138 Identities=16% Similarity=0.238 Sum_probs=95.7
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---------CCeEEEEEcCCCCCeEEEEEe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---------D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.+.+|...|+|.+=|+++. .+..++..|.+.|..+.+.+ +.++++|. |.-+++||++..... ..
T Consensus 189 ~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDfDv~G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral----~P 261 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDFDVQG--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL----SP 261 (1118)
T ss_pred EEEeecccceEEeecCCcC-ceeeeeeccccceeeeeccC--CeEEEeecccccccccccchhhhhhhhhhhcc----CC
Confidence 5788999999999999864 56788999999998876654 56788764 677899998643110 01
Q ss_pred eecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEccC-CeE-EEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 294 INLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRK-GSA-LAILKYHH--ATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~-~~~-~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+..+. +-.=+.|+|- ...++..+..|...+-|..+ +++ ...+.-|+ ..+....+|++|..||.+-.+|.|.+|.
T Consensus 262 I~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 262 IQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccc-CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11111 1123557774 34567788889999887321 121 22222233 4589999999999999999999999997
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.15 Score=52.72 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=77.3
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-CCeEEEEECCC-CCEEEEEeCCCeEEEEEc-
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PGISGTSIRPD-SKIAATAGWDRRVRIYNY- 327 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~- 327 (374)
....|..+.++.+...||.--.|. |.||-.. ...+-++.++.... ..+..+.|+|. ...+...+.+|.+..++.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEee--CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 356789999999888777655444 9999763 44556666666543 23445889985 334555666566655433
Q ss_pred ---cCC----------------eEE----------------EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 328 ---RKG----------------SAL----------------AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 328 ---~~~----------------~~~----------------~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
..+ ..+ ..+. -+..|..++|++++..+|.-..|+.+.+|.+.
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 211 111 1111 24679999999999889999999999999853
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0001 Score=71.49 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~ 60 (374)
++..+++.|...-+|++|+...+.|+.|+..|.|++++..+|........|.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~ 1143 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ 1143 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc
Confidence 5778899999999999999999999999999999999999987655554453
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=60.23 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=58.6
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
....+.|.+++|+...++.|+.||+|++||.....-... + ..-....++|||+|.+++.|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----K-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----e-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 567899999999999999999999999999865421111 1 112356789999999999999999999999963
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0043 Score=56.46 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=89.7
Q ss_pred EEEEecCC-cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg-~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
++.|..|| .|-+||.+.. .+..+......|.++..++++..++.+-....+.+.|++.++.+..- +....-|.
T Consensus 374 ~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id----kS~~~lIt 447 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID----KSEYGLIT 447 (668)
T ss_pred eEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec----ccccceeE
Confidence 67888898 8999998753 34555667789999999999987777766677888888755433221 12234588
Q ss_pred EEEECCCCCEEEEEeCC----CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 303 GTSIRPDSKIAATAGWD----RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
...+||+++++|=+--+ ..|+++|+..++....- ...+.=.+=||.||+++|-.
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEE
Confidence 99999999999866544 47999999887765432 12222234478899997643
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0092 Score=59.34 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=93.5
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCC---CCceEEEEEecCCcEEEE
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS---QGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gs~dg~i~iw 236 (374)
+...++......+.+.-.|+++|+.+..-.-+.. .. +..+.++.. ......+.|-.++.|.-|
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------~~-----v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------IP-----VVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC---------cc-----eeEecccccccccCCCceEEEECCCceEEe
Confidence 3345566656667888889999997765432210 00 111222210 001135679899999999
Q ss_pred eccCCCCceeeeec----CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 237 DIRNPGIPLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 237 dl~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
|+|..+..+..-+. ......|++-..+| .+|.||.+|.|||||--+.. ....+..-...|..+.++.||++
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~----AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR----AKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh----hhhcCCCCCCCeeEEEecCCCcE
Confidence 99875433322122 23467888888777 58999999999999842211 11122233467999999999999
Q ss_pred EEEEeCCCeEEEEEc
Q 017296 313 AATAGWDRRVRIYNY 327 (374)
Q Consensus 313 l~s~~~dg~v~iwd~ 327 (374)
|+++| +..+.+.+.
T Consensus 633 ilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 633 ILATC-KTYLLLIDT 646 (794)
T ss_pred EEEee-cceEEEEEE
Confidence 99776 667778875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.084 Score=45.17 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=99.6
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA- 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~- 247 (374)
..++.+..||..+|+.+........ . ... .. . ..+ .++.++.++.|..+|.++.. .+-.
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~----~------~~~-~~--~----~~~--~v~v~~~~~~l~~~d~~tG~-~~W~~ 102 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGP----I------SGA-PV--V----DGG--RVYVGTSDGSLYALDAKTGK-VLWSI 102 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSC----G------GSG-EE--E----ETT--EEEEEETTSEEEEEETTTSC-EEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeecccc----c------cce-ee--e----ccc--ccccccceeeeEecccCCcc-eeeee
Confidence 5678999999999987766542110 0 000 00 0 011 46677788899999987643 3332
Q ss_pred eecCc-----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC--------CeEEEEECCCCCEEE
Q 017296 248 MKVHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP--------GISGTSIRPDSKIAA 314 (374)
Q Consensus 248 ~~~h~-----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~l~ 314 (374)
..... .......+. +..++.+..++.+..+|++. ++............ ....-.+..++ .+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 177 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVY 177 (238)
T ss_dssp EE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEE
T ss_pred ccccccccccccccCceEe--cCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEECC-EEE
Confidence 12111 112223333 44567777799999999864 44443333321110 11222233345 555
Q ss_pred EEeCCCe-EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 315 TAGWDRR-VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 315 s~~~dg~-v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.++.++. +.+ |+.+++.+.... ...+.. ...+++..|+.++.|+.|..||+..+
T Consensus 178 ~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 178 VSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred EEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 5666764 666 999998765333 333332 14567788887779999999998764
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.15 Score=47.63 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=76.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++.++.+|.+..+|+++... +=.. .......+... +..++.++.++.+...|.+.. ........... ....
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~-~W~~--~~~~~~~~~~~--~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~-~~~~ 329 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQI-VWKR--EYGSVNDFAVD--GGRIYLVDQNDRVYALDTRGG--VELWSQSDLLH-RLLT 329 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCE-EEee--cCCCccCcEEE--CCEEEEEcCCCeEEEEECCCC--cEEEcccccCC-Cccc
Confidence 466677889999999876432 2111 11111112222 234667778899988887543 32222111000 1111
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE-EEEeCCCCEEEEEeCCCcEEEec
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA-VSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~-v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+..+ .+.+|+.++.||.+...|..+|+.+...+-+...+.+ -.+ .++ .|..++.||.|..++
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTVYAIT 392 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceEEEEe
Confidence 1122 2446777899999999999999988776544333332 122 244 667778999887754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.11 Score=51.12 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=74.0
Q ss_pred EEEEEecCCcEEEEec---cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDI---RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.++.|..||.|..+.= |..+....-...-.+||+.+.+-.++..++-...-..|.+|.+...+.. ...+..+..
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~---~~~ld~~G~ 215 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS---LKVLDNNGI 215 (933)
T ss_pred EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc---eeeeccCCc
Confidence 4778888998888742 2212212212224679999999655555455556678999998754411 222445566
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCce
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATC 343 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~v 343 (374)
.+.+.+|++....+++++ ...+.+|+....++..++. +|....
T Consensus 216 ~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 216 SLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred cceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 788888887666455554 5578889887666666676 666433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.048 Score=47.16 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=81.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v 301 (374)
+++-...+.|.-||..... ...+. ......+.++ ++ ..++.+..++ +.++|.+...-.......... .....
T Consensus 15 ~~~D~~~~~i~~~~~~~~~--~~~~~--~~~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 15 YWVDIPGGRIYRVDPDTGE--VEVID--LPGPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp EEEETTTTEEEEEETTTTE--EEEEE--SSSEEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred EEEEcCCCEEEEEECCCCe--EEEEe--cCCCceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCC
Confidence 4455567888889886532 22222 2226677777 45 4556665555 455577543222222111011 23457
Q ss_pred EEEEECCCCCEEEEEeCC--------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWD--------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
..+++.|+|++.++.... |.|..++.. ++ ...+...-...+.++|+||++.| ++-+..+.|..+++.
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecc
Confidence 789999999977766544 456667665 44 33333345678999999999965 566777877777764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=62.29 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=98.1
Q ss_pred EEEEEecCCcEEEEeccCCCC--------------ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGI--------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 288 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~ 288 (374)
+++.|+.||.+++-.+.+... .-+++.||...|.-+.++...+-+-|...+|-|.+|=+-.+ ++
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg--sW 105 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG--SW 105 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc--cH
Confidence 588899999999988754211 12457899999999999876666667778999999976322 21
Q ss_pred EEEEee--ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE--EecccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 289 VIKKEI--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 289 ~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
. .++ +...+-|.+++|.-||+.|.....||-|-+=.+ +|.++. .+++. ....+.|++|.+.+..+=+.|.+
T Consensus 106 ~--EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv-dGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 106 C--EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV-DGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred H--HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee-ccceecchhcchh--eccceeecccHHHHHhhhcCCcE
Confidence 1 111 122356889999999999998999998866555 344332 22221 22467899999877777778888
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.+++-+
T Consensus 181 hlydnq 186 (1189)
T KOG2041|consen 181 HLYDNQ 186 (1189)
T ss_pred EEeccc
Confidence 887753
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0026 Score=60.53 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=80.7
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe--
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-- 331 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-- 331 (374)
.+.--+++....+++.|+.-|.+.+++-.. +.+...+. ......+...++|++..++|.|+..|.|.++-++...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~--~~~~~~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHT--GEMRKLKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCc--hhhhcccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344444566667789999999999997542 22222111 1122335567899999999999999999999876532
Q ss_pred -EEEE---ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 332 -ALAI---LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 332 -~~~~---~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.... -+.|...|+++.|++|++.+.+|..-|.|.+-.++
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 1111 13478899999999999999999999998876553
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.2 Score=45.25 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=83.6
Q ss_pred CcEEEEeccCC---CCceeee--ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 231 GSILVWDIRNP---GIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 231 g~i~iwdl~~~---~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
|.|.+|++.+. ...+..+ .....+|+++..-.. . +..+..+.|.+|+++... ........... ..+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~--~-lv~~~g~~l~v~~l~~~~-~l~~~~~~~~~-~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG--R-LVVAVGNKLYVYDLDNSK-TLLKKAFYDSP-FYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT--E-EEEEETTEEEEEEEETTS-SEEEEEEE-BS-SSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC--E-EEEeecCEEEEEEccCcc-cchhhheecce-EEEEEEe
Confidence 88999999762 1122222 234678988877632 2 445556899999997654 22322233222 2455554
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccC-CeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYRK-GSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.. +.+|+.|...+.+.++..+. ++.+..+.. ....+.++.|-+|++.++.+..+|.+.++...
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 44 45889999999998886543 443444433 34568888898777899999999999998774
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.016 Score=56.98 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=42.0
Q ss_pred EEEEEecCCcEEEEeccCCCCc-eeeeecC--ccCeEEEEEecCCCceEEEecCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIP-LTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~-~~~~~~h--~~~v~~~~~~~~~~~~~s~s~D~~i~lwd 280 (374)
.+++.|+.|+..+-|...-..+ ......+ ...+..+.+++.++.++.|..+|.|.+|.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5778899999999993222222 2222223 33488888899999999999999999997
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.038 Score=53.74 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=90.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-----CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-----CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
+++++|.||.|.|..+-++.. ..++. ...|+..++++|+ ...+++||.-| +.++.-+--..+-. ......
T Consensus 85 y~asCS~DGkv~I~sl~~~~~-~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~--v~l~~~ 159 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDE-ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS--VVLSEG 159 (846)
T ss_pred eEEEecCCCcEEEeeccCCcc-ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc--eeeecC
Confidence 699999999999998866433 22222 3578999999887 34678888888 77764221111000 012233
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC------CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH------ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~------~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+.|.+++|. |.+||=+. |--|+++|+.+.+.+..++-.. .....+.|.++.++++ |+-.+|+|..+..
T Consensus 160 eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIKK 234 (846)
T ss_pred ccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEec
Confidence 4568888887 55777666 4458899998887776554222 2345678887766655 6667788887753
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.037 Score=55.19 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=89.7
Q ss_pred EecCCcEEEEeccCCCCceeeeecCccC-eEEEEEecCC-----CceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCC
Q 017296 227 GYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESC-----NGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERP 299 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~-----~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~ 299 (374)
....+.|.-.||+. +..+...+.|... |..++-+.+. ..-..|=.++.+..||.+-...+.+......+ ...
T Consensus 500 ~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 500 PNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 44567788888875 4556666666543 6666554221 22356778889999998755433332111111 122
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...+++-+.+| +||.|+.+|.||+||. .|+..++ +.+-..+|.+|..+.||++|+... +..+-|.+.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 35667777777 6888999999999995 4554544 445568999999999999765444 455555554
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.031 Score=54.78 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=91.2
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccC-eEEEEEecCCCceEEEecCC-----eEEEEEcCCCC----CeEE---
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQ-----KIVLYNLDHST----GSCV--- 289 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~s~D~-----~i~lwd~~~~~----~~~~--- 289 (374)
.++.|+.+|.|-+.+-. -...+.++.+... |..+....+...+++-+.|+ .+++||++... ..+.
T Consensus 37 ~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred eEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 58889999988887642 1223556666666 55555544444556655553 59999997542 2233
Q ss_pred EEEeeec--CCCCeEEEEECCCCCEEEEEeCCCeEEEEEc--cC--CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 290 IKKEINL--ERPGISGTSIRPDSKIAATAGWDRRVRIYNY--RK--GSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 290 ~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~--~~--~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
....... ....+.++++|.+-+.||+|-.||.|-.+.- .. +....-...-.++|+.+++..+++.+..+..-..
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~ 194 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ 194 (933)
T ss_pred eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecce
Confidence 1122122 2356788999999999999999999987722 11 1211111123469999999999986433444466
Q ss_pred EEEecCC
Q 017296 364 VALWELY 370 (374)
Q Consensus 364 v~~W~~~ 370 (374)
|.++.++
T Consensus 195 V~~y~l~ 201 (933)
T KOG2114|consen 195 VMLYSLS 201 (933)
T ss_pred eEEEEec
Confidence 7777664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.003 Score=61.39 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=63.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.++||+|..-.++.|=.-|.+.+|...+.+.......|+.+|..+.||++|..|.|+..-|.|.+|.++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6689999998888888888999999998888777777899999999999999999999999999999875
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0041 Score=55.38 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCeEEEEECCCCC-EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCCC
Q 017296 297 ERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPH 373 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~~ 373 (374)
+...|+.++|||... ++..++.+.+|+|.|+++......+..| +.+++.+|.-|.+ +|-.|-..|.|.++|+..|+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 445688999999766 7889999999999999988877777777 7999999998877 55566789999999997664
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0072 Score=56.98 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=63.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE-EEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.+.-+.|+|--.++|.+..+|.+-+..+. -+++.++.-|...+. +++|.|||++||.|=.||+|++-|++-|+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 35667889988899999999999888776 677888887777776 99999999999999999999999998775
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.044 Score=56.50 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=85.8
Q ss_pred EEEEecCCcEEEE----eccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC-------------CCC
Q 017296 224 VLAGYEDGSILVW----DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH-------------STG 286 (374)
Q Consensus 224 ~~~gs~dg~i~iw----dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~-------------~~~ 286 (374)
++.+..+|.|.+. |.... .......-...|.+++++|++..++....++++.+-+-+. +..
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred EEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC
Confidence 6677888999988 54321 1222222356899999999998888888888887744321 000
Q ss_pred eEEE-----------------------EE--------eeecCCCCeEEEEECCCCCEEEEEeC----C--CeEEEEEccC
Q 017296 287 SCVI-----------------------KK--------EINLERPGISGTSIRPDSKIAATAGW----D--RRVRIYNYRK 329 (374)
Q Consensus 287 ~~~~-----------------------~~--------~~~~~~~~v~~~~~sp~~~~l~s~~~----d--g~v~iwd~~~ 329 (374)
+++. .. .+. ..++-..++|..||+|+|..+. . +.+|||+.+
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re- 245 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE- 245 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-
Confidence 0000 00 011 2234567899999999987764 2 679999874
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
|+...+-..-.+--..++|.|.|.+||+...
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 7655544433334456899999999999764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.29 Score=46.04 Aligned_cols=130 Identities=11% Similarity=0.000 Sum_probs=72.5
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
..|.+-|..- .. .+.+.... ......++|++.. ++..+. +..|.++|+.+....... ..........|
T Consensus 169 ~~l~~~d~dg-~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-----~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTL-TY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-----SSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCC-Cc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-----cCCCcEEeeEE
Confidence 3566655532 22 22232233 6778888998874 444333 346777777544322221 12233456789
Q ss_pred CCCCCEEE-EEeCC--CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe-CCCc--EEEecC
Q 017296 307 RPDSKIAA-TAGWD--RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-EDST--VALWEL 369 (374)
Q Consensus 307 sp~~~~l~-s~~~d--g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~--v~~W~~ 369 (374)
||||+.|+ +.+.+ ..|.++|+.+++ ...+..+........|+|||+.|+-.+ ..+. |.+.++
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99998765 44434 457777876665 344444443334457999999776554 3443 444444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=52.82 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=84.9
Q ss_pred EEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
+++..+.+. .-.|+...+ .+........-.-+.+.++|.|.+|+|-...| |.+|-=+.. ... .+....++
T Consensus 181 f~v~~d~~~~~svfwN~~~n-~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~----~RF~Hp~V 252 (698)
T KOG2314|consen 181 FVVQDDVKTTVSVFWNSKFN-EPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRI----QRFYHPGV 252 (698)
T ss_pred EEEEecCcceeEEEccccCC-chhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccH--HHH----HhccCCCc
Confidence 444333333 566776432 22222222344567788999999888876666 888832111 111 11122568
Q ss_pred EEEEECCCCCEEEEEeCC-----------CeEEEEEccCCeEEEEecc--cCCceE-EEEEeCCCCEEEEEeCCCcEEEe
Q 017296 302 SGTSIRPDSKIAATAGWD-----------RRVRIYNYRKGSALAILKY--HHATCN-AVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~--h~~~v~-~v~~sp~~~~las~s~D~~v~~W 367 (374)
.-+.|||+.+||++-+.. ..+.|||+.+|.....+.. ....++ -..||-|++++|--..| .|.|+
T Consensus 253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIy 331 (698)
T KOG2314|consen 253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIY 331 (698)
T ss_pred eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEE
Confidence 889999999999987642 5789999999987766654 222333 35899999999876554 45555
Q ss_pred c
Q 017296 368 E 368 (374)
Q Consensus 368 ~ 368 (374)
+
T Consensus 332 E 332 (698)
T KOG2314|consen 332 E 332 (698)
T ss_pred e
Confidence 4
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.49 Score=40.87 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=73.7
Q ss_pred ccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEe-eecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 252 LEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKE-INLER--PGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~--~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
....+.++|++++..++ +-+..+.|..++++........... ..... .....+++..+|++.++.-..+.|.++|.
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 34567899999988665 6677889999998755442221111 11122 23678999999998887778999999998
Q ss_pred cCCeEEEEecccCCceEEEEEe-CCCC-EEEEE
Q 017296 328 RKGSALAILKYHHATCNAVSFS-SDCK-LMASA 358 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~s-p~~~-~las~ 358 (374)
+ |+.+..+.-....+++++|. |+.+ +++|.
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 6 88888777665689999995 6655 44444
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.24 Score=36.49 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=61.1
Q ss_pred CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE
Q 017296 265 NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 344 (374)
Q Consensus 265 ~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 344 (374)
+.|+.||.|..||+|+=+. +..++.. ...+.+++-...+ .++-+-.+|+|.+|+- .+++...+. +..+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e------~~~Ei~e-~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~ 84 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE------IVAEITE-TDKVTSLCSLGGG-RFAYALANGTVGVYDR--SQRLWRIKS-KNQVT 84 (111)
T ss_pred ceEEEecCCcEEEEEeCCc------EEEEEec-ccceEEEEEcCCC-EEEEEecCCEEEEEeC--cceeeeecc-CCCeE
Confidence 4579999999999996431 2233332 3457777766664 5777899999999975 455666653 33466
Q ss_pred EEEEeC---CCC-EEEEEeCCCcEEE
Q 017296 345 AVSFSS---DCK-LMASASEDSTVAL 366 (374)
Q Consensus 345 ~v~~sp---~~~-~las~s~D~~v~~ 366 (374)
++++.. ||. .|++|-.+|.|-+
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeEEe
Confidence 665443 333 7899988887753
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.026 Score=53.45 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=60.1
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE-EEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS-GTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
+..+.++|....+|.+-.+|.+.+..++ .+..+ .+..+...++ +++|.|||+++|.|-.||+|++-|+.++..+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw----tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW----TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeE----eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3444555655666777777766665543 11111 1122223344 9999999999999999999999999998877
Q ss_pred EEe-cccCCceEEEEEeC
Q 017296 334 AIL-KYHHATCNAVSFSS 350 (374)
Q Consensus 334 ~~~-~~h~~~v~~v~~sp 350 (374)
... ..-...|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 552 23456777777853
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0078 Score=53.70 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
++...+.+|...|+.|+|+|..+ +|..++.+.+|+|-|+++.-++..+..|. .+-+++|+.. +.+.+..|-..|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~---~~wSC~wDld-e~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN---QIWSCCWDLD-ERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC---CceeeeeccC-CcceeEEeccCce
Confidence 45667889999999999999776 89999999999999999876666655552 3567777764 3467778889999
Q ss_pred EEEEecCCC
Q 017296 88 VKCWDIENG 96 (374)
Q Consensus 88 vrvwd~~~~ 96 (374)
|-++|++..
T Consensus 260 VlvyD~R~~ 268 (463)
T KOG1645|consen 260 VLVYDMRQP 268 (463)
T ss_pred EEEEEccCC
Confidence 999999865
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.79 Score=40.47 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=106.9
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-----EecCCcEEEE
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-----GYEDGSILVW 236 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gs~dg~i~iw 236 (374)
..++++-.--....+||..+++....+.... ++.+. ....|.+ ++. +|++ ....|.|-+|
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~----------gRHFy-GHg~fs~---dG~-~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPP----------GRHFY-GHGVFSP---DGR-LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCC----------CCEEe-cCEEEcC---CCC-EEEEeccccCCCcEEEEEE
Confidence 3344444444568899999998776664321 11110 1112322 232 2333 2335889999
Q ss_pred eccCCCCceeeeecCccCeEEEEEecCCCceEEE--ec-----CCeEEEEEcCCCC----------CeEEEEEee--ecC
Q 017296 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG--GA-----DQKIVLYNLDHST----------GSCVIKKEI--NLE 297 (374)
Q Consensus 237 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~--s~-----D~~i~lwd~~~~~----------~~~~~~~~~--~~~ 297 (374)
|.+..-..+..+..|.-.-..+.+.+++..|+.+ +- .|..+| |++..+ +...-+.++ ..+
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 9974323344455555445556677777555433 21 234444 233322 222222223 335
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe-------EEEEEccCCeEEEEecc-------cCCceEEEEEeCCCCEE-EEEeCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRR-------VRIYNYRKGSALAILKY-------HHATCNAVSFSSDCKLM-ASASEDS 362 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~-------v~iwd~~~~~~~~~~~~-------h~~~v~~v~~sp~~~~l-as~s~D~ 362 (374)
+-.++-+++.++|..+...-+.|. |-+++ .++.+..+.. -.+.+-+|++++++.++ +|+-.-+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 556888999999877665555543 33332 2333333322 23679999999999866 6777889
Q ss_pred cEEEecCCCC
Q 017296 363 TVALWELYPP 372 (374)
Q Consensus 363 ~v~~W~~~~~ 372 (374)
.+-+||...+
T Consensus 240 ~~~~~d~~tg 249 (305)
T PF07433_consen 240 RVAVWDAATG 249 (305)
T ss_pred EEEEEECCCC
Confidence 9999987654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.3 Score=39.71 Aligned_cols=181 Identities=14% Similarity=0.166 Sum_probs=103.3
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
-..|.|-|++.++.+..+.-+. |..+. |..+. .+.+-+.||++....+...++..+....
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PG--------------C~~iy---P~~~~---~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPG--------------CWLIY---PSGNR---GFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTS--------------EEEEE---EEETT---EEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred CCeEEEEECCCCceeeeecCCC--------------EEEEE---ecCCC---ceEEEecCCceEEEEECCCCCEeEeecc
Confidence 3468888888888776665321 22221 22112 4778899999999999765554322111
Q ss_pred ----CccCeEEE-EEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--c---C--C-CCeEEEEECCCCC-EEEEE
Q 017296 251 ----HLEPVLCL-SIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--L---E--R-PGISGTSIRPDSK-IAATA 316 (374)
Q Consensus 251 ----h~~~v~~~-~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--~---~--~-~~v~~~~~sp~~~-~l~s~ 316 (374)
..+++..- .+......++--+..|.|.--|+...........++- . . + .+-.-+++++..+ +.+..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 11222211 1233333456677888888888765442222111110 0 0 0 1223477876544 33322
Q ss_pred e--CCC-------eEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEE-eCCCcEEEecCCCC
Q 017296 317 G--WDR-------RVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 317 ~--~dg-------~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~-s~D~~v~~W~~~~~ 372 (374)
. .++ .|.++|+.+++++..+.- +..+.+|+.+.|.+ +|... ..++.+.+||...+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 2 111 588889999999988863 34578999999877 66554 46899999998654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.14 Score=46.67 Aligned_cols=148 Identities=11% Similarity=-0.023 Sum_probs=90.8
Q ss_pred EEEEEec-CCcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCCceEE--EecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 223 NVLAGYE-DGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 223 ~~~~gs~-dg~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s--~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
.+.+.+. |..+|+||+++.... ...+..-...+..+.-.++...+++ .-.++.|.++|-....+. .....+.|.
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q--~~~fkklH~ 144 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ--DGYFKKLHF 144 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc--cceeccccc
Confidence 3556566 999999999764322 1111111122222211122222222 234678888875432211 112234466
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccC------CeE---------EEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK------GSA---------LAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~------~~~---------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
.+|..+.+.|-+..++|....|-|.-|.... .+. +..+........++.|+|+|..+++-+.|..
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE
Confidence 7788999999888899998889999998762 111 1122223456788999999999999999999
Q ss_pred EEEecCCCC
Q 017296 364 VALWELYPP 372 (374)
Q Consensus 364 v~~W~~~~~ 372 (374)
||++.+..+
T Consensus 225 VR~F~~KtG 233 (558)
T KOG0882|consen 225 VRGFVFKTG 233 (558)
T ss_pred EEEEEeccc
Confidence 999876543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.24 Score=46.36 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=80.6
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEE--ecCCCce-----EEEecCCeEEEEEcCCCCCeEE-EEEeee
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI--DESCNGG-----ISGGADQKIVLYNLDHSTGSCV-IKKEIN 295 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~-----~s~s~D~~i~lwd~~~~~~~~~-~~~~~~ 295 (374)
+.++.....|.-.|++. +..+..-+.|.+ |.-+.+ +.+..++ +.|-.|+.|.-||.+-.....+ .....+
T Consensus 349 l~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 33455556666677764 444555555555 333333 3233222 4566789999999864322111 111111
Q ss_pred cCC-CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 296 LER-PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 296 ~~~-~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+.+ ....|.+-..+| +||.|+.+|.||+||. .++..++ +++-..+|..|..+.||++|+... +.++-+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 110 123344444455 7888999999999998 5665554 566678999999999999766444 344433
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0041 Score=58.68 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=90.1
Q ss_pred EEEEecCCcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCC-ceEEEe----cCCeEEEEEcCCCCCeEEEEEeee-c
Q 017296 224 VLAGYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCN-GGISGG----ADQKIVLYNLDHSTGSCVIKKEIN-L 296 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~~~s~s----~D~~i~lwd~~~~~~~~~~~~~~~-~ 296 (374)
++.|..+|.|-+-.++.+... .....+|..+.++++|.+-.. .+|.|- .|-.+++||+...--.......+. .
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~ 152 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS 152 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc
Confidence 566888899998888754321 222346788999999965422 334332 367899999975300000001111 1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
...+..++++-.+.+++.+|...+.++++|++..- .....-.+..+..+...| .+.++++.+ |+.|.+||-
T Consensus 153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred cccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 23456688888899999999999999999997321 111111223344455566 666888876 999999993
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.042 Score=33.70 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 52 (374)
...|.+++|+|...+|+.|..||.|.|+-+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0048 Score=58.26 Aligned_cols=135 Identities=18% Similarity=0.326 Sum_probs=85.0
Q ss_pred CCcEEEEeccCCC-Cceee--eec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 230 DGSILVWDIRNPG-IPLTA--MKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 230 dg~i~iwdl~~~~-~~~~~--~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
|-.++|||+...- .|... +.. ..+....+++..+...+++|.....++++|++....++.. + ....+..+.
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s---v--nTk~vqG~t 202 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS---V--NTKYVQGIT 202 (783)
T ss_pred cCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh---h--hhhhcccce
Confidence 5789999996420 11111 222 3445667777777777889999999999998743222211 1 112356678
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEc-cCC-eEEEEecccCC----ceEEEEEeCCCC-EEEEEeC-CCcEEEecCC
Q 017296 306 IRP-DSKIAATAGWDRRVRIYNY-RKG-SALAILKYHHA----TCNAVSFSSDCK-LMASASE-DSTVALWELY 370 (374)
Q Consensus 306 ~sp-~~~~l~s~~~dg~v~iwd~-~~~-~~~~~~~~h~~----~v~~v~~sp~~~-~las~s~-D~~v~~W~~~ 370 (374)
+.| .+.|+++-. ||-|.+||. ..- +++..+...++ .+..++|+|... .+++.+. .++|+++++.
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 888 777887655 999999993 322 22333332333 489999999654 6666654 4678888763
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.048 Score=33.43 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 340 HATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+.|..++|+|...+||.++.||.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 357999999999999999999999999887
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.8 Score=40.89 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCcEEEEeccCC---CCceeeeecCccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCC----e----EEEEEeeecC
Q 017296 230 DGSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTG----S----CVIKKEINLE 297 (374)
Q Consensus 230 dg~i~iwdl~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~----~----~~~~~~~~~~ 297 (374)
++.|.+.|.++. ...+.....-......+.++|++.+++. +..++++.+.|++.... + -....+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 467888887651 1112212123445667888999988765 45599999999865321 0 011122221
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
..+-.-.+|.++|....|--.|..|..||+.+
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12345678999998888888899999999976
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.2 Score=41.97 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=77.9
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEE--EeccCCCCceeeee
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV--WDIRNPGIPLTAMK 249 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~i--wdl~~~~~~~~~~~ 249 (374)
..+.++|+.+++....+........+.+++. +...+++...||...| +|+... .+..+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD-----------------G~~l~f~~~rdg~~~iy~~dl~~~--~~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPD-----------------GSKLAFSSSRDGSPDIYLMDLDGK--NLPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCC-----------------CCEEEEEECCCCCccEEEEcCCCC--cceecc
Confidence 4688999998875443332222222333332 3334556666666555 455432 222232
Q ss_pred cCccCeE-EEEEecCCCceEEEe-cCCeEEEE--EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CCe--E
Q 017296 250 VHLEPVL-CLSIDESCNGGISGG-ADQKIVLY--NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DRR--V 322 (374)
Q Consensus 250 ~h~~~v~-~~~~~~~~~~~~s~s-~D~~i~lw--d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~--v 322 (374)
+...+. .=.++|++..++-.| ..|.-.+| |++..+. .+... ....-..-.+||||++|+..+. +|. |
T Consensus 279 -~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~--~~~~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 279 -NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTF--SGGGNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred -cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeec--cCCCCcCccCCCCCCEEEEEeccCCceee
Confidence 222222 334578888776544 44544444 4443322 11111 1111224578999999886664 344 5
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
.+.|+.++.....+. +......-.|.|+|+.+..
T Consensus 353 ~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 353 DKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 556665554333332 2222333355666665443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.061 Score=54.18 Aligned_cols=98 Identities=13% Similarity=0.274 Sum_probs=67.7
Q ss_pred eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE-
Q 017296 267 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA- 345 (374)
Q Consensus 267 ~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~- 345 (374)
++.|+.-|.+-+.|+...-+ +... -.....+|++++|+.+|+.++.|-.+|-|.+||...++.++.+..|..++..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~-~~~~--ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLG-PLHQ--NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEEEcCchhhhhhhhhcccc-hhhc--CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45666677777776643100 0001 1122467999999999999999999999999999999998888766655444
Q ss_pred --EEEeCCCCEEEEEeCCCcEEEecC
Q 017296 346 --VSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 346 --v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+.+..++..+.++..-|. +|++
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444456667777766664 6765
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.06 Score=44.75 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=56.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-CC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~~ 300 (374)
.++.|+.+|.|.+|.....+........-.++|.++-.. .+.....+++.||.|+.|++....... ....|. ..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g----~~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG----YVGQHNFES 147 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee----eeccccCCC
Confidence 478899999999998753222111112223445444332 233356789999999999986432111 112222 12
Q ss_pred eEEEEECCCCCEEEEE--eCCCeEEEEEccC
Q 017296 301 ISGTSIRPDSKIAATA--GWDRRVRIYNYRK 329 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~--~~dg~v~iwd~~~ 329 (374)
......+..++.++++ +.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2223333344455555 6677777777754
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.011 Score=58.12 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=90.7
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec--CCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~--D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
.++.|+-.|.|++|+..+ +.......+|..+|+.+.-+.++...++.+. .--..||++.. ++. ....-..
T Consensus 1115 hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-~~~------~~Hsf~e 1186 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-TGG------PRHSFDE 1186 (1516)
T ss_pred eEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchHHHhcccc-ccC------ccccccc
Confidence 688899999999999976 4445567789999999988666655554443 23577898853 211 1111123
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc----CCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH----HATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
-.++.|+...+.-+.|+.-..+.+||++++..+.++-.. .-.-+.+.|+|+..++.- ||. +||...|
T Consensus 1187 d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1187 DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DGV--LWDVRIP 1257 (1516)
T ss_pred cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cce--eeeeccH
Confidence 456788876555555666678899999999877663221 112256779998887763 553 5877544
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=49.43 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=72.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe-EE-EEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS-CV-IKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~-~~-~~~~~~~~~~~ 300 (374)
.++.|+.-|.+.+|+-...........+-...+....+++.....|.|++.|.|.++-++..... .. ....-+.|...
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r 126 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR 126 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence 57889999999999864322222223233334444555666666788888999999877642211 11 11112235567
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
|++++|++|+..+.+|...|+|..-.+..
T Consensus 127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEEEecccccEEeecCCCceEEEEEech
Confidence 99999999999999999999998876654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=2 Score=36.77 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=53.1
Q ss_pred CeEEeecCCCceeEEEEeC-------------------CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEecc
Q 017296 10 PVAVLRGHRASVTDVCFHQ-------------------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~-------------------~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 70 (374)
.....-.|...+.++.+-. -|++++-|...|.+++-+..+|...-.+..-. ...+.+..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~- 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQC- 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEE-
Confidence 4444556877777665421 15567788888889988888886554443221 12222222
Q ss_pred CCccccceeeeccccCeEEEEecCCCC
Q 017296 71 GPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 71 ~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
.+++..+..|+.|+.+..-|+.+..
T Consensus 102 --d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 102 --DFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred --cCCCceEEEecCCCcEEEecccccc
Confidence 2244677899999999999987643
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.8 Score=38.11 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=91.4
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-CC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~-~~ 242 (374)
+++.|..++.+.|-|+|....+....-.........+.....+.+.+..+ .........++.|++.|.+.+|.+-- ..
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~-~~D~ySSi~L~vGTn~G~v~~fkIlp~~~ 177 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL-GGDGYSSICLLVGTNSGNVLTFKILPSSN 177 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE--TTSSSEEEEEEEEETTSEEEEEEEEE-GG
T ss_pred EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec-CCCcccceEEEEEeCCCCEEEEEEecCCC
Confidence 45667788999999998877655432111000000000001122222222 11111234678899999999998841 11
Q ss_pred Ccee----ee-ecCccCeEEEEE-ecC-C-------------------CceEEEecCCeEEEEEcCCCCCeEEEEEeeec
Q 017296 243 IPLT----AM-KVHLEPVLCLSI-DES-C-------------------NGGISGGADQKIVLYNLDHSTGSCVIKKEINL 296 (374)
Q Consensus 243 ~~~~----~~-~~h~~~v~~~~~-~~~-~-------------------~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 296 (374)
.... .. ..+.++|..+.. +.+ + ..++....+..||++......+.+ +..+.
T Consensus 178 g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~---K~~~~ 254 (395)
T PF08596_consen 178 GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH---KSFDD 254 (395)
T ss_dssp G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---EE-SS
T ss_pred CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---eeecc
Confidence 1111 11 235566666653 221 1 124555667889998775432211 11111
Q ss_pred CCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC----CceEEEEEeCCCCEEEEEe
Q 017296 297 ERPGISGTSI-----RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH----ATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 297 ~~~~v~~~~~-----sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~----~~v~~v~~sp~~~~las~s 359 (374)
...+.++++ ...+..|++-..+|.|+++.+-.-+.+..++-+. ..+....++++|+.+.-.|
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 112334455 2356678888899999999998777776655432 2344567788998776554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.16 Score=51.31 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=66.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++.|++-|.|-.+|++.+-.++..-..-+.+|++++|+.++..++.|=.+|.|.+||+........+. +......++-
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEE
Confidence 377889999999999865322322233346799999999999988999999999999997543222221 1111222333
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
-+-+..++..++++..-|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 3334445556777766665 5654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.1 Score=46.19 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=84.8
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcC--CCC-----------CeEEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--HST-----------GSCVI 290 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~--~~~-----------~~~~~ 290 (374)
++.+..+|.|.+-|..+. .+.....-...|.+++++|++..++....++++.+=+-+ .-. .++..
T Consensus 83 i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~ 160 (1265)
T KOG1920|consen 83 ICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVN 160 (1265)
T ss_pred EEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccce
Confidence 666778889999887643 222222235689999999999888888887777763321 000 00000
Q ss_pred E----E--eee------------c---------CCCCeEEEEECCCCCEEEEEe----CC-CeEEEEEccCCeEEEEecc
Q 017296 291 K----K--EIN------------L---------ERPGISGTSIRPDSKIAATAG----WD-RRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 291 ~----~--~~~------------~---------~~~~v~~~~~sp~~~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~ 338 (374)
. . .+. . ..+.-.+++|.-||+++|... .+ ++|++||.+ |..-.+-..
T Consensus 161 VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~ 239 (1265)
T KOG1920|consen 161 VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP 239 (1265)
T ss_pred ecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc
Confidence 0 0 000 0 011224589999999988732 34 899999986 432211111
Q ss_pred cCCceEEEEEeCCCCEEEEE---eCCCcEEEe
Q 017296 339 HHATCNAVSFSSDCKLMASA---SEDSTVALW 367 (374)
Q Consensus 339 h~~~v~~v~~sp~~~~las~---s~D~~v~~W 367 (374)
-.+.=.+++|-|.|.++|+- +.|+.|.++
T Consensus 240 ~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 22334678999999999974 345567665
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.4 Score=32.48 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=57.9
Q ss_pred CCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 219 ~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
++...|++||+|..||+|+=. ..+..++ .++.|.++.-... ..++.+-..|+|-+|+-. ...+. .+..
T Consensus 13 dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR----iKSK- 80 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR----IKSK- 80 (111)
T ss_pred CCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee----eccC-
Confidence 344579999999999999743 2344343 4566777766544 458889999999998642 11111 1222
Q ss_pred CCeEEEEE-CCC--C-CEEEEEeCCCeEEE
Q 017296 299 PGISGTSI-RPD--S-KIAATAGWDRRVRI 324 (374)
Q Consensus 299 ~~v~~~~~-sp~--~-~~l~s~~~dg~v~i 324 (374)
..+.++.+ ..+ | +-|++|-.+|.|-+
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22455443 333 2 24778888888753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.99 Score=42.60 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=37.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|.+|...+.+ .|.+||+.+++.+..+... .|..|.|+++|+++|-.+.| ++.+.+.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 7777766544 8999999999999888633 48999999999999988866 5656543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.38 E-value=5.1 Score=38.58 Aligned_cols=68 Identities=18% Similarity=0.062 Sum_probs=40.3
Q ss_pred CCEEEEecCCCcEEEEeCcccceeeeeeeeec--eeeeEEeccCCcccc-ceeeeccccCeEEEEecCCCC
Q 017296 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 30 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~l~s~~~D~~vrvwd~~~~~ 97 (374)
+..++.++.++.+.-.|..+|+.+=....... ......+.......+ .+++.++.|+.|.-+|.++|+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCC
Confidence 45677788889999999998875432221110 000000110101112 567778889999999999985
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.9 Score=40.59 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=86.3
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCC---CceEEEEEecCCcEEEEec
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ---GFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gs~dg~i~iwdl 238 (374)
.+++..+.....++--|++.|+.+..-.-.- + ..|+ .+.++... ....-+.|-.|+.|.=||+
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~---------d-i~mv----~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFED---------D-INMV----DITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccC---------C-ccee----eccCCcchhcccccccEEeecCCceEEecc
Confidence 4566677666778888999888654432110 0 0110 11111000 0012456888999999999
Q ss_pred cCCCC-ceeeeecCc----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE
Q 017296 239 RNPGI-PLTAMKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 239 ~~~~~-~~~~~~~h~----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 313 (374)
|-.+. .+...++|. ....|.+-..+| +++.||.+|-|||||--....+ ..+..-...|..+..+-||++|
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK----TAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK----TALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh----hcccccCCceeeEEeeccCcEE
Confidence 86554 233333432 345666655565 5789999999999985211111 1122223568888999999999
Q ss_pred EEEeCCCeEEEEEcc
Q 017296 314 ATAGWDRRVRIYNYR 328 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~ 328 (374)
+++| +.++.+-++.
T Consensus 487 l~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 487 LATC-KTYLLLIDTL 500 (644)
T ss_pred EEec-ccEEEEEEEe
Confidence 8766 6677776653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.74 Score=45.68 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=54.6
Q ss_pred eeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeee-eeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 21 V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
++++||+|..-+|++|=.-|.+-||+..+.+. ++. ..|. ..+..+-|++ +|+.++|+-.-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 46799999999999999999999999876443 222 2233 4577788887 67899999999999999986
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.61 E-value=6.3 Score=36.87 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=83.9
Q ss_pred CceEEEEEecCCcEEEEeccCCCCc---eeeeecCccCeEEEEEec----CCCceEEEecCCeEEEEEcCCCCCe-----
Q 017296 220 GFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSIDE----SCNGGISGGADQKIVLYNLDHSTGS----- 287 (374)
Q Consensus 220 ~~~~~~~gs~dg~i~iwdl~~~~~~---~~~~~~h~~~v~~~~~~~----~~~~~~s~s~D~~i~lwd~~~~~~~----- 287 (374)
+...++.||..|.++||+....... +..-..-..||..+..-. .....+.-=.-..+.+|.+....+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3456899999999999998543311 111122356887776621 1111222234556677776433222
Q ss_pred -EEE--EEeeecCCCCeEEEEECC----C-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 288 -CVI--KKEINLERPGISGTSIRP----D-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 288 -~~~--~~~~~~~~~~v~~~~~sp----~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
..+ ..+...++ ...+++.-| . ..+|..-+.||.+.+|+-+..-....+.. .--..-+.|.|.-..+++++
T Consensus 116 ~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 222 22222221 233444433 2 24677889999999998754333333332 22333468888888888888
Q ss_pred CCCcEEEecC
Q 017296 360 EDSTVALWEL 369 (374)
Q Consensus 360 ~D~~v~~W~~ 369 (374)
.+..+.-++.
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8888877754
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.029 Score=55.30 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=79.0
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEE-ecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee---ecCCCC---eEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPG---ISG 303 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~---~~~~~~---v~~ 303 (374)
+.|++-+....-.-...+++..+.+..+.| +.++..++ -.-|..-+|+++--+|......+. .-.... |..
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 445655543210001235666777777777 33333222 233678889986544332111111 111112 333
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEE-----------EEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV-----------SFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v-----------~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.-|-++.-++-.+-.+++|++.+..+... ..+++|...+..+ ..||||..+|.++.||.+++|.++.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 34445677777788889999876654332 3345565444332 3789999999999999999998853
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=6.6 Score=36.57 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=67.5
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.++.+...|+.+++.+-+.... .. .... + .. ..++.++.+|.|..+|.++.. .+=.
T Consensus 262 ~~~~g~l~ald~~tG~~~W~~~~~---------~~-~~~~--~-------~~--~~vy~~~~~g~l~ald~~tG~-~~W~ 319 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWKREYG---------SV-NDFA--V-------DG--GRIYLVDQNDRVYALDTRGGV-ELWS 319 (394)
T ss_pred EEcCCeEEEEECCCCCEEEeecCC---------Cc-cCcE--E-------EC--CEEEEEcCCCeEEEEECCCCc-EEEc
Confidence 445688999999998765443210 00 0000 0 01 146677788999999886532 1110
Q ss_pred eec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE-EEECCCCCEEEEEeCCCeEEEE
Q 017296 248 MKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG-TSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 248 ~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~~~dg~v~iw 325 (374)
... -........+. +..++.++.||.+...|.++ +....+.... ...+.+ -.+ .++ .|+.++.||.+..+
T Consensus 320 ~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t--G~~~~~~~~~--~~~~~s~P~~-~~~-~l~v~t~~G~l~~~ 391 (394)
T PRK11138 320 QSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINRED--GRFVAQQKVD--SSGFLSEPVV-ADD-KLLIQARDGTVYAI 391 (394)
T ss_pred ccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCC--CCEEEEEEcC--CCcceeCCEE-ECC-EEEEEeCCceEEEE
Confidence 100 00111111121 23467888999999988754 4443333221 112221 112 133 56678889988776
Q ss_pred Ec
Q 017296 326 NY 327 (374)
Q Consensus 326 d~ 327 (374)
++
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 53
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.25 E-value=6.1 Score=35.62 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=77.7
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCcc--CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
++++ .++.|.+|++.... .+.....+.. .+.++... +..++.|.....+.++..+....+... .........+
T Consensus 101 lv~~-~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v 175 (321)
T PF03178_consen 101 LVVA-VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWV 175 (321)
T ss_dssp EEEE-ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEE
T ss_pred EEEe-ecCEEEEEEccCcc-cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccE
Confidence 4444 46899999998654 2322222323 55555554 346788888888888866543222222 1222333457
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccC-------Ce-EEEE-eccc-CCceEEE---EEeCC--CC------EEEEEeC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRK-------GS-ALAI-LKYH-HATCNAV---SFSSD--CK------LMASASE 360 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~-------~~-~~~~-~~~h-~~~v~~v---~~sp~--~~------~las~s~ 360 (374)
.++.|-+++..++.+..+|.+.++.... +. .+.. ..-| ...|+++ .+.|. +. .++.++.
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~ 255 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV 255 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec
Confidence 7888876667899999999999997752 22 2322 2223 3567776 44452 22 3777888
Q ss_pred CCcEE
Q 017296 361 DSTVA 365 (374)
Q Consensus 361 D~~v~ 365 (374)
+|.|-
T Consensus 256 ~G~Ig 260 (321)
T PF03178_consen 256 DGSIG 260 (321)
T ss_dssp TS-EE
T ss_pred CCEEE
Confidence 99887
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=93.20 E-value=7.2 Score=36.32 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=77.5
Q ss_pred EEEEEecCCcEEEEeccCCCCcee-eeec------CccCeEEEEEe-----cCC---CceEEEecCCeEEEEEcCC-CCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLT-AMKV------HLEPVLCLSID-----ESC---NGGISGGADQKIVLYNLDH-STG 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~-~~~~------h~~~v~~~~~~-----~~~---~~~~s~s~D~~i~lwd~~~-~~~ 286 (374)
.++.|+++|.+.+.|+|.+..... .+.. ....++++.|. .++ ..++.|...|.+..|.+.. ..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g 178 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNG 178 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG
T ss_pred EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCC
Confidence 478899999999999986543222 1111 23467788772 222 3457788889999998853 223
Q ss_pred eEEEE--EeeecCCCCeEEEE-EC------------------C---CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc
Q 017296 287 SCVIK--KEINLERPGISGTS-IR------------------P---DSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT 342 (374)
Q Consensus 287 ~~~~~--~~~~~~~~~v~~~~-~s------------------p---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~ 342 (374)
.+... .....+...+..+. |. + ...+ +....+..+|++..-+.+...........
T Consensus 179 ~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~-vVvvSe~~irv~~~~~~k~~~K~~~~~~~ 257 (395)
T PF08596_consen 179 RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY-VVVVSESDIRVFKPPKSKGAHKSFDDPFL 257 (395)
T ss_dssp -EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE-EEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE-EEEEcccceEEEeCCCCcccceeeccccc
Confidence 33211 11112333333332 31 1 1123 44455889999988777665443323233
Q ss_pred eEEEEEe-----CCCCEEEEEeCCCcEEEecC
Q 017296 343 CNAVSFS-----SDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 343 v~~v~~s-----p~~~~las~s~D~~v~~W~~ 369 (374)
+..+.+- ..+..|+.--.||.|+++.+
T Consensus 258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred cceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 3444442 24567888889999999876
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.01 E-value=4.4 Score=36.25 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=45.8
Q ss_pred CeEEEEECCCCCEEEEEeC---------CCeEEEEEcc-CCeEEEEecccCCceEEEEEeCCCCEEEEE-eCCCcEEEec
Q 017296 300 GISGTSIRPDSKIAATAGW---------DRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCKLMASA-SEDSTVALWE 368 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~---------dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~ 368 (374)
..+...+.|+|.+.+.... -..=.+|-+. .+.....+..|-..-+.|+||||++.|..+ +..+.|.-++
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4556788899988765444 1112344444 455555666666677899999999865544 5557776666
Q ss_pred CC
Q 017296 369 LY 370 (374)
Q Consensus 369 ~~ 370 (374)
+.
T Consensus 192 ~d 193 (307)
T COG3386 192 LD 193 (307)
T ss_pred cC
Confidence 64
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.91 E-value=14 Score=38.75 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=48.5
Q ss_pred CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 19 ~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+.|.++.|..+.+-++.+..+|.|.+-|..+...- . ......+|.+.++++ |+..++-...++++-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-i--vg~vd~GI~aaswS~--Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-I--VGNVDNGISAASWSP--DEELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-e--eeeccCceEEEeecC--CCcEEEEEeCCcEEEE
Confidence 68999999999988888888899999898765421 1 122345688888887 6677776666666644
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=2.3 Score=41.82 Aligned_cols=108 Identities=13% Similarity=0.004 Sum_probs=58.7
Q ss_pred cCeEEEEEecCCCceEEEe------cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC-CeEEEE
Q 017296 253 EPVLCLSIDESCNGGISGG------ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-RRVRIY 325 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-g~v~iw 325 (374)
..+...++++++..++..- .|..-.||=.+.......+ .. ......-.|+|||+.|+..... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l---t~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV---LE--GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee---ec--CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 4667788888887665433 3444455533321111111 11 1235667899998877766533 223333
Q ss_pred EccCCeEEEEe--c------ccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 326 NYRKGSALAIL--K------YHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 326 d~~~~~~~~~~--~------~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+......+..+ . ...+.|..++|||||+.||... ++.|.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 22111122111 1 2345799999999999887655 455554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.68 E-value=5.5 Score=35.64 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=70.0
Q ss_pred eecCccCeEEEEEecCCCceEEE-ecCCeEEEEEcCCCCCeE---EEEEeeecCCCCeEEEEECCCCCEEEEEeCCC-eE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSC---VIKKEINLERPGISGTSIRPDSKIAATAGWDR-RV 322 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~-s~D~~i~lwd~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~v 322 (374)
+..+..--+.|+|+|++..++.+ +..+.|.-++++..++.. ........+....-.++..-+|.+-+++.++| .|
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 33344455678999999776654 445788888876321111 00111112223344677777888776777776 89
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEe-CCCCEE-EEE
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFS-SDCKLM-ASA 358 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l-as~ 358 (374)
.+|+.+ ++.+..+.-+...+.+++|- |+.+.| +|+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 999987 89888888776788888985 555544 444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.14 E-value=2.7 Score=39.57 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=65.1
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
..+.++|+....... .+. ....-..-.|+|++..++ +...||...+|=++..... . ..+......-..=.|+||
T Consensus 218 ~~i~~~~l~~g~~~~-i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~--~~Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPV-ILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L--PRLTNGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccce-eec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c--eecccCCccccCccCCCC
Confidence 458888887643222 111 122233345678777665 4455776666554433222 1 112111111124579999
Q ss_pred CCEEE-EEeCCCeEEEE--EccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 310 SKIAA-TAGWDRRVRIY--NYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 310 ~~~l~-s~~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
|++|+ +.+..|.-.|| |.+.+. ...+.-....-..-.|+|||++|+..+.
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 99887 44455665555 443333 2223222222226689999999887764
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.1 Score=26.76 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred CeEEEEECCCCC---EEEEEeCCCeEEEEEccC
Q 017296 300 GISGTSIRPDSK---IAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 300 ~v~~~~~sp~~~---~l~s~~~dg~v~iwd~~~ 329 (374)
.++++.|||++. +|+-+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478899998655 788887789999999984
|
It contains a characteristic DLL sequence motif. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.28 E-value=2.1 Score=40.21 Aligned_cols=69 Identities=26% Similarity=0.293 Sum_probs=45.8
Q ss_pred EEEEECCCCCEEEEE-eCCC----eEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCC-----------cE
Q 017296 302 SGTSIRPDSKIAATA-GWDR----RVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDS-----------TV 364 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~-~~dg----~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~-----------~v 364 (374)
...++|||++++|-+ +..| +++++|+.+++.+.. +.. ... ..+.|.+|++.|+....|. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-ccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 357899999988733 3333 599999999987653 222 111 2389999999777665443 37
Q ss_pred EEecCCCC
Q 017296 365 ALWELYPP 372 (374)
Q Consensus 365 ~~W~~~~~ 372 (374)
++|.+..+
T Consensus 205 ~~~~~gt~ 212 (414)
T PF02897_consen 205 YRHKLGTP 212 (414)
T ss_dssp EEEETTS-
T ss_pred EEEECCCC
Confidence 77777543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=91.19 E-value=6.5 Score=35.05 Aligned_cols=106 Identities=7% Similarity=0.038 Sum_probs=54.8
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-ccCC
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN-YRKG 330 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd-~~~~ 330 (374)
...+..+...+++.+++.++.-+-.+-||-... .... .......++.++.|+|++.+.+.+ ..|.|++=+ ....
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~--~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQP--HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EE--EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceE--EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 345666666788877666666666677764221 1221 112233579999999998875544 888888766 2222
Q ss_pred eEEEE----ecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 331 SALAI----LKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 331 ~~~~~----~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
+.... +..-.-.+..++|.++++..|.|+...
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 22221 111122478899999988888766443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.10 E-value=7.9 Score=35.94 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=70.2
Q ss_pred EEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEccCCeE
Q 017296 257 CLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW---DRRVRIYNYRKGSA 332 (374)
Q Consensus 257 ~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~v~iwd~~~~~~ 332 (374)
.+.+++.+. .++....++.|.+.|.+..+.... .... .....++++|+++.+..+.. ++++.+.|..+.+.
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---IPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---eeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 344444444 344555578888888654321111 1111 13567899999987655544 78999999998888
Q ss_pred EEEecccCCceEEEEEeCCCCE-EEEEeCCCcEEEecCC
Q 017296 333 LAILKYHHATCNAVSFSSDCKL-MASASEDSTVALWELY 370 (374)
Q Consensus 333 ~~~~~~h~~~v~~v~~sp~~~~-las~s~D~~v~~W~~~ 370 (374)
......-..+ ..+++.|+|+. +++-+.+++|.+.+..
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 7775433333 78999999994 4555688999888754
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.65 E-value=9.6 Score=32.31 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=59.9
Q ss_pred EEEecCCeEEEEEcCCCCCeEEEEEe---eec----CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC
Q 017296 268 ISGGADQKIVLYNLDHSTGSCVIKKE---INL----ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 340 (374)
Q Consensus 268 ~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~----~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~ 340 (374)
++-+.+-+|.-||.+..++....+.. ++. +...-..+++...|.+.++.-.-++|...|..+|+.+.+++-..
T Consensus 174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 45666777777876555543322111 111 11112245566678777777778899999999999999998888
Q ss_pred CceEEEEEeC-CCC-EEEEEeC
Q 017296 341 ATCNAVSFSS-DCK-LMASASE 360 (374)
Q Consensus 341 ~~v~~v~~sp-~~~-~las~s~ 360 (374)
..|++++|-- +-. +.+|+.+
T Consensus 254 ~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 254 PQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CceEEEEecCCCccEEEEEehh
Confidence 9999999963 222 4445443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.6 Score=39.30 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceee--eEEeccCCc-----------
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSVATGPS----------- 73 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------- 73 (374)
+..+...|......+.+|+.+|.+.+.+..+.=|.|.++|+.++..++..++...+.- +........
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 3456677778888899999999999998888889999999988876666555432211 001110000
Q ss_pred cccc--eeeeccccCeEEEEecCCCC
Q 017296 74 IGLN--KVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 74 ~~~~--~l~s~~~D~~vrvwd~~~~~ 97 (374)
.... .++=+-.-|.|.+|.+++|.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC
Confidence 0001 23345677999999999874
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=90.34 E-value=18 Score=34.90 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE--EEEeCCCC-EEEEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA--VSFSSDCK-LMASA 358 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~--v~~sp~~~-~las~ 358 (374)
.+.+|..++.||.+..+|.++|+.+...+- .+.+.+ +.+..+|+ ++++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEEEEEEE
Confidence 345788888999999999999999887764 233322 33455776 45543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=89.89 E-value=17 Score=33.98 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=61.6
Q ss_pred cCCcEEEEeccCCCCceeeeecCcc--CeEEEEE--ecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecC------
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVHLE--PVLCLSI--DESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLE------ 297 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h~~--~v~~~~~--~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~------ 297 (374)
-...+.+||+++ ...++++.--.+ ....+.| +|+.... +.+....+|-+|--+ ..+.+...+.+...
T Consensus 220 yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 220 YGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--S
T ss_pred ccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCc
Confidence 357899999986 455666544332 3555666 4554443 444445566665432 23334333222211
Q ss_pred -------------CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCC---eEEEEec-c-------c--------CCceE
Q 017296 298 -------------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKG---SALAILK-Y-------H--------HATCN 344 (374)
Q Consensus 298 -------------~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~---~~~~~~~-~-------h--------~~~v~ 344 (374)
-.-++.+.+|.|.++|...++ +|.||-||+.+. +...+.. + | .+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 123678999999999977775 899999999764 3332211 1 1 12345
Q ss_pred EEEEeCCCCEE-EEEe
Q 017296 345 AVSFSSDCKLM-ASAS 359 (374)
Q Consensus 345 ~v~~sp~~~~l-as~s 359 (374)
-|..|-||+.| +|.|
T Consensus 378 MvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEE-TTSSEEEEE--
T ss_pred eEEEccCCeEEEEEee
Confidence 67888999865 4443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.46 E-value=14 Score=32.32 Aligned_cols=139 Identities=21% Similarity=0.285 Sum_probs=75.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-----EE-----
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-----KK----- 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-----~~----- 292 (374)
.++.|+++| |.++++..+....... +..+|..+.+-++...++. =.|+.+.+++++.-...... ..
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llv-Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLV-LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEE-EcCCccEEEEchhhcccccccccccccccccc
Confidence 588898888 9999984333323222 3445888988776554433 34699999998643211100 00
Q ss_pred eeecCCCCeEEEE--ECC-CCCEEEEEeCCCeEEEEEccCC-----eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 293 EINLERPGISGTS--IRP-DSKIAATAGWDRRVRIYNYRKG-----SALAILKYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 293 ~~~~~~~~v~~~~--~sp-~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
..-....++...+ -.+ ....|+.+ ..++|.+|..... +.++.+. -+..+.+++|. +..|+-|..++ .
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f 159 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-F 159 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-e
Confidence 0001112343333 112 33344444 4669999888653 3444544 34678888987 34555555444 3
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.+-|+.
T Consensus 160 ~~idl~ 165 (275)
T PF00780_consen 160 YLIDLN 165 (275)
T ss_pred EEEecC
Confidence 334443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.03 E-value=8.6 Score=36.49 Aligned_cols=72 Identities=11% Similarity=0.206 Sum_probs=48.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEE---------ccCCeEEEE----------e-cccCCceEEEEEeCCC---CEEEE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYN---------YRKGSALAI----------L-KYHHATCNAVSFSSDC---KLMAS 357 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd---------~~~~~~~~~----------~-~~h~~~v~~v~~sp~~---~~las 357 (374)
|..+..+|.|..++-+|-+|-+-+.= .++++..-. + ....-.+.-++|+|+. ..|.-
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 66788899999999999999876642 123332111 0 1112245667899975 46666
Q ss_pred EeCCCcEEEecCCCC
Q 017296 358 ASEDSTVALWELYPP 372 (374)
Q Consensus 358 ~s~D~~v~~W~~~~~ 372 (374)
-+.|.++|++++..+
T Consensus 186 L~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEP 200 (741)
T ss_pred EecCcEEEEEecCCc
Confidence 678999999998643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.6 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=24.8
Q ss_pred CceeEEEEeCC-C--CEEEEecCCCcEEEEeCcc
Q 017296 19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ 49 (374)
Q Consensus 19 ~~V~~l~~~~~-~--~~l~s~s~D~~v~vWd~~~ 49 (374)
++|+++.|+|+ + .+|+-+-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999974 4 5788777779999999864
|
It contains a characteristic DLL sequence motif. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.9 Score=41.68 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE-Eecc-------c-----
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKY-------H----- 339 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~-------h----- 339 (374)
.+.+.++|++....... ......+....|||+|+.+|-.. ++.+.+++..+++..+ +..+ -
T Consensus 22 ~~~y~i~d~~~~~~~~l-----~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPL-----TPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEES-----S-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEEC-----cCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 34678888875421111 11124577889999999988664 7889999887664432 2222 0
Q ss_pred ----CCceEEEEEeCCCCEEEEEe-CCCcEEEe
Q 017296 340 ----HATCNAVSFSSDCKLMASAS-EDSTVALW 367 (374)
Q Consensus 340 ----~~~v~~v~~sp~~~~las~s-~D~~v~~W 367 (374)
.+.-..+-||||+++||... .+..|+.+
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 11235578999999998764 34444444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.37 E-value=3.7 Score=34.80 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccCCeEEEE-------ec-------ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRKGSALAI-------LK-------YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-------~~-------~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..++.++++-+.+|.+.+||+.+++.+.. +. .....|..+.++.+|.-|++-+ +|....|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3556788888899999999999998775421 22 2446788888999999777765 4677877654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=88.33 E-value=21 Score=32.92 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=56.0
Q ss_pred EEEEeccCCCCceeeeecCccC-eEEE-EEecCCCceEE-----EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 233 ILVWDIRNPGIPLTAMKVHLEP-VLCL-SIDESCNGGIS-----GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~~-v~~~-~~~~~~~~~~s-----~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
-|||=++..+.....+..+... +..- .|.+++..+.- ++.+..|.-.|.+....... .++ ....-+-
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~----p~~~H~~ 289 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEM----PWCSHFM 289 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-----SEEEEE
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE--EeC----CceeeeE
Confidence 3778776544434444333221 1112 22455543321 22244555555543322221 111 2344456
Q ss_pred ECCCCCEEEEEeCCC----------------eEEEEEccCCeEEEEecccC---------Cc--eEEEEEeCCCCEE-EE
Q 017296 306 IRPDSKIAATAGWDR----------------RVRIYNYRKGSALAILKYHH---------AT--CNAVSFSSDCKLM-AS 357 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg----------------~v~iwd~~~~~~~~~~~~h~---------~~--v~~v~~sp~~~~l-as 357 (374)
.++|+++++-=|.|. .|.+++++.++... +..|. .. =....|+|||++| .+
T Consensus 290 ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~ 368 (386)
T PF14583_consen 290 SSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR 368 (386)
T ss_dssp E-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEE
T ss_pred EcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEE
Confidence 679999987555543 45567787665432 22221 11 2457899999955 56
Q ss_pred EeCCCcEEEecCCCCC
Q 017296 358 ASEDSTVALWELYPPH 373 (374)
Q Consensus 358 ~s~D~~v~~W~~~~~~ 373 (374)
+...|...|+-+..|+
T Consensus 369 Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 369 SDMEGPPAVYLVEIPD 384 (386)
T ss_dssp E-TTSS-EEEEEE--C
T ss_pred CCCCCCccEEEEeCcc
Confidence 6778888887666554
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.24 E-value=11 Score=32.57 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE-EEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+.+++.|+..|.+.+-+.++|++++.+..-+ .|. .....+++.++-.++.|++.+.-|.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecc
Confidence 4468999999999999999998777665322 222 2345679999999999999887654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.9 Score=37.42 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=46.0
Q ss_pred EECCCCCEEEEEeCC-----CeEEEEEccCC-eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 305 SIRPDSKIAATAGWD-----RRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 305 ~~sp~~~~l~s~~~d-----g~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+|||||++|...-.| |-|-|||.+.+ +.+..+..|.-....+.+.+||+.|+-+. |-|+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIet 185 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIET 185 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceec
Confidence 689999999876543 67999998743 45667888887888899999999988653 44443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.78 E-value=3.7 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCeEEEEecc
Q 017296 308 PDSKIAATAG-WDRRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 308 p~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~ 338 (374)
|+++.+..+. .+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5667655444 578999999988887776654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=87.70 E-value=22 Score=36.00 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=49.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcc----------CCeE---EEEe--------cccCCceEEEEEeCC---CCEE
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYR----------KGSA---LAIL--------KYHHATCNAVSFSSD---CKLM 355 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~----------~~~~---~~~~--------~~h~~~v~~v~~sp~---~~~l 355 (374)
.|..+.++|+|+++|..|..|-+ |-.+- .++. ..++ ..+...|..++|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 47889999999999988876544 33331 1111 1111 123457889999996 4677
Q ss_pred EEEeCCCcEEEecCCCCC
Q 017296 356 ASASEDSTVALWELYPPH 373 (374)
Q Consensus 356 as~s~D~~v~~W~~~~~~ 373 (374)
+-=..|+++|+||+..|.
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 777789999999997654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.96 E-value=25 Score=32.41 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=56.8
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCC---C-CeEEEEEeeec----CCCCeEEEEECCCCCEEEEEeCC------
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHS---T-GSCVIKKEINL----ERPGISGTSIRPDSKIAATAGWD------ 319 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~---~-~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s~~~d------ 319 (374)
....+.+.+++ ++.++.....++.|.+.. + ....+...+.. +......++|.|||.+.++-+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 34567776666 444555544444455421 1 11122222221 12446789999999876655521
Q ss_pred -------------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 320 -------------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 320 -------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
|.|..+|...++ +..+.......+.++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 445556654433 334433334567899999999887644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=86.94 E-value=19 Score=31.08 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=90.3
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe-cCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~dg~i~iwdl~~ 240 (374)
+.++++....+.|.-.++ +|+.+..++-.. +. ..- .+ .+.. .+ .++..+ .++.+.++++..
T Consensus 34 ~tLfaV~d~~~~i~els~-~G~vlr~i~l~g------~~---D~E--gI-~y~g---~~--~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 34 GTLFAVQDEPGEIYELSL-DGKVLRRIPLDG------FG---DYE--GI-TYLG---NG--RYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp TEEEEEETTTTEEEEEET-T--EEEEEE-SS-------S---SEE--EE-EE-S---TT--EEEEEETTTTEEEEEEE--
T ss_pred CeEEEEECCCCEEEEEcC-CCCEEEEEeCCC------CC---Cce--eE-EEEC---CC--EEEEEEcCCCcEEEEEEec
Confidence 335555566677766676 467766654211 11 100 11 1111 12 244444 488899998843
Q ss_pred CCCc--e---eeee-----cCccCeEEEEEecCCCceEEEecCCeEEEEEcCC--CCCeEEEEEe-----eecCCCCeEE
Q 017296 241 PGIP--L---TAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH--STGSCVIKKE-----INLERPGISG 303 (374)
Q Consensus 241 ~~~~--~---~~~~-----~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~--~~~~~~~~~~-----~~~~~~~v~~ 303 (374)
.... . +.+. .+...+-.+++|+....++.+-.....+++.++. .......... .......+++
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 2211 1 1111 2344588999999888888887777778887764 1111111110 1112234788
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEEccCCeEEEEe--cc--c-----CCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 304 TSIRPD-SKIAATAGWDRRVRIYNYRKGSALAIL--KY--H-----HATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 304 ~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~--h-----~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
++|+|. +.+++-....+.+..+| .+|+.+..+ .. | -.+.-.|+|.++|.+.+++ +-+..
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 999996 45667777889999999 467765543 22 1 1357789999999866653 44433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.66 E-value=2 Score=39.37 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=36.5
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+...++|+.+++.. .+......+....|||+|+.||... |+.|.+++..
T Consensus 22 ~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp EEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred ceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 457888999886644 3433356788899999999999876 6788888763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=86.48 E-value=7.5 Score=36.35 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=50.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-CceEEEEEe-CCC----------------C-EEEEEeC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFS-SDC----------------K-LMASASE 360 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s-p~~----------------~-~las~s~ 360 (374)
.+.+++.+|++++.|....=|+|.++|+..+..+..++|-. +.+.-+... +.. . +++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 47789999999999988888999999999887666555432 122111111 111 1 3466888
Q ss_pred CCcEEEecCCCC
Q 017296 361 DSTVALWELYPP 372 (374)
Q Consensus 361 D~~v~~W~~~~~ 372 (374)
-|.|.||.+..+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 999999998654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=86.24 E-value=24 Score=32.01 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=55.8
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE-ee-ecCCCCeEEEEECCC----CCEEEEEeCC--------C
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EI-NLERPGISGTSIRPD----SKIAATAGWD--------R 320 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~-~~-~~~~~~v~~~~~sp~----~~~l~s~~~d--------g 320 (374)
.+.|++.|++..++ +...|.|++.+.+.......... +. .....++..++|+|+ +.+.++.... .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 46788888876544 56699999998332210111111 11 123356889999995 4433333321 2
Q ss_pred eEEEEEccCC-------eEE-EEecc---cCCceEEEEEeCCCCEEEEEeCCC
Q 017296 321 RVRIYNYRKG-------SAL-AILKY---HHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 321 ~v~iwd~~~~-------~~~-~~~~~---h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
.|..|.+..+ +.+ ..+.. ....-..|+|.|||.+.++.+..+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 4555655443 111 12222 223456799999999777766444
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=85.65 E-value=11 Score=34.70 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=32.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccC-------CeEE-EEecc----cCCceEEEEEeCCCCEEEEEe
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRK-------GSAL-AILKY----HHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-------~~~~-~~~~~----h~~~v~~v~~sp~~~~las~s 359 (374)
....+++.+++ +++ ++...-.++.|... .+.+ ..+.. +....+.++|.|||++.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 35678999998 544 44443333334421 1112 22322 234577899999999776554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.25 E-value=5.2 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=18.9
Q ss_pred ccCCceEEEEEeCCCCEEEEE-eCC--CcEEEe
Q 017296 338 YHHATCNAVSFSSDCKLMASA-SED--STVALW 367 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~-s~D--~~v~~W 367 (374)
...+.-...+|||||+.|+.+ ..+ +.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778999999977655 444 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.00 E-value=45 Score=33.52 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=67.8
Q ss_pred ceEEEEEecCCcEEEEeccC-------C----C--------CceeeeecCccCeEEEEEe--cCCCceEEEecCCeEEEE
Q 017296 221 FVNVLAGYEDGSILVWDIRN-------P----G--------IPLTAMKVHLEPVLCLSID--ESCNGGISGGADQKIVLY 279 (374)
Q Consensus 221 ~~~~~~gs~dg~i~iwdl~~-------~----~--------~~~~~~~~h~~~v~~~~~~--~~~~~~~s~s~D~~i~lw 279 (374)
...|+.+.+||.|.+|..+. . . .|...+. .......++++ ...+.+|.++.-..|.+|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 34577899999999997621 0 0 1122222 23478888887 666777888888899998
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCC---C---EEEEEeCCCeEEEEEc
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDS---K---IAATAGWDRRVRIYNY 327 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~s~~~dg~v~iwd~ 327 (374)
-+.....+.....+. .+...|.+++|-++. . .|++++=.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 775432221111111 134568889986543 2 7888889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=84.86 E-value=7.4 Score=38.09 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=28.2
Q ss_pred eEEEEECC----CCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 301 ISGTSIRP----DSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 301 v~~~~~sp----~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
..++++++ +..++++-+.|+++|+||+.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 45566666 7788999999999999999999986554
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=84.78 E-value=35 Score=32.06 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=34.9
Q ss_pred cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 41 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
.|.|++. .|+.+..+.-.. ..++.+.|.. ...|+....||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--GRIVGMGWTD---DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--CCEEEEEECC---CCeEEEEEcCCEEEEEeCC
Confidence 5888885 567666543222 5688888875 3567888899999999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.72 E-value=10 Score=37.82 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCceEEEecCCeEEEEEcCC-------C-------CCeEEEE--EeeecCCCCeEEEEEC--CCCCEEEEEeCCCeEEE
Q 017296 263 SCNGGISGGADQKIVLYNLDH-------S-------TGSCVIK--KEINLERPGISGTSIR--PDSKIAATAGWDRRVRI 324 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~-------~-------~~~~~~~--~~~~~~~~~v~~~~~s--p~~~~l~s~~~dg~v~i 324 (374)
....|+.+..||.|.+|.++. . ....... ..... ...+++++++ ...++||.++.-..|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence 344678899999999997631 0 0000000 11111 2358899998 88889998888888888
Q ss_pred EEccC--CeEEEE-ecccCCceEEEEEeCCC------CEEEEEeCCCcEEEecC
Q 017296 325 YNYRK--GSALAI-LKYHHATCNAVSFSSDC------KLMASASEDSTVALWEL 369 (374)
Q Consensus 325 wd~~~--~~~~~~-~~~h~~~v~~v~~sp~~------~~las~s~D~~v~~W~~ 369 (374)
|-... .+.... -..|...|.+|.|-++. .+|+.++-.|.+-+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 85543 221111 11266789999998743 27888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.50 E-value=9.1 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.5
Q ss_pred ceEEEEEeCCC------CEEEEEeCCCcEEEecC
Q 017296 342 TCNAVSFSSDC------KLMASASEDSTVALWEL 369 (374)
Q Consensus 342 ~v~~v~~sp~~------~~las~s~D~~v~~W~~ 369 (374)
.+..++|||-| .+||.-..++.|.||.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 78889999943 38899999999999965
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.46 E-value=42 Score=31.17 Aligned_cols=182 Identities=16% Similarity=0.117 Sum_probs=103.4
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe--cCCcEEEEeccCCCCce
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPL 245 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs--~dg~i~iwdl~~~~~~~ 245 (374)
...++.|.+.|+++.+.+........+ ..+ .+.+ .+....++-+ .++++-+.|-.+.. ..
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~~P---------~~~-----~~~~---~~~~vYV~n~~~~~~~vsvid~~t~~-~~ 153 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGLGP---------VGL-----AVDP---DGKYVYVANAGNGNNTVSVIDAATNK-VT 153 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeeccCC---------ceE-----EECC---CCCEEEEEecccCCceEEEEeCCCCe-EE
Confidence 334678999998777665554322100 000 1111 2222344444 46888888875432 23
Q ss_pred eeeecCccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEe-eecCCCCeEEEEECCCCCEEEEEeCC---C
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAATAGWD---R 320 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~d---g 320 (374)
.....-..| ..+.+++++..++. ...++++.+.|........ .... .......-..+.++|+++++...... +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 333332345 78899999885544 4578999999865432110 0000 00111234568999999976655544 5
Q ss_pred eEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEE-eCCCcEEEecC
Q 017296 321 RVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASA-SEDSTVALWEL 369 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~ 369 (374)
++...|..++..... ...-......++.+|+|+.+-.. +..+.|.+-|.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 899999888776554 22111145668899999976655 44466666554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=81.33 E-value=26 Score=32.80 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=47.1
Q ss_pred cCCeEEEEEcCCCCCeEEEEEeeecCCC--CeEEEEEC--CCCCE-EEEEeCCCeEEEEEc-cCCe----EEEEecc---
Q 017296 272 ADQKIVLYNLDHSTGSCVIKKEINLERP--GISGTSIR--PDSKI-AATAGWDRRVRIYNY-RKGS----ALAILKY--- 338 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s--p~~~~-l~s~~~dg~v~iwd~-~~~~----~~~~~~~--- 338 (374)
..+++.+||+...... +.+..... ....+.|. |+..+ ++.+-...+|.+|-. .+++ .+..+..
T Consensus 220 yG~~l~vWD~~~r~~~----Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLL----QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp S--EEEEEETTTTEEE----EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred ccCeEEEEECCCCcEe----eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 3579999999754322 22222222 24456664 44433 333335556666644 3332 1111111
Q ss_pred --------------cCCceEEEEEeCCCCEE-EEEeCCCcEEEecCCCCC
Q 017296 339 --------------HHATCNAVSFSSDCKLM-ASASEDSTVALWELYPPH 373 (374)
Q Consensus 339 --------------h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~~~~ 373 (374)
-+.-|+.+.+|.|.++| ++.-.+|.||.||+++|+
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 02457888999999966 677889999999999886
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=81.16 E-value=16 Score=32.59 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
..+..+..++||++++.+..-....-||--.. ..... +.-..+|.++.|.||+.+.+.+ ..+.|++=
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 45777888999999887765555566764321 12222 2345789999999998865543 66766653
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=80.70 E-value=14 Score=34.61 Aligned_cols=48 Identities=19% Similarity=0.482 Sum_probs=36.2
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.|+||+. .|+.+..+.-..+.+.++.|+.+ +.|+.-..||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 5888876 57777765433489999999876 455556789999999873
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=80.39 E-value=48 Score=32.93 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=46.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCceEEEEEe--CCCCEEEEEeCCCcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFS--SDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s--p~~~~las~s~D~~v~~W~~ 369 (374)
..-+.-|.-++..+.-+...++.|||.+.+..-..-. ...+.|..++|. |||+.+.+.|-...|.++.-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3444445556555555555679999998776332211 245689999986 78998888888888888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 374 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 9e-08 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-07 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 7e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 8e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 8e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-04 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-04 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 6e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 7e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-04 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 8e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 374 | |||
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.98 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.98 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.98 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.92 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.82 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.81 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.81 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.8 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.78 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.76 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.75 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.74 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.74 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.73 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.7 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.69 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.69 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.67 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.6 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.6 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.6 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.53 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.52 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.52 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.48 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.44 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.38 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.36 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.36 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.35 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.33 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.27 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.27 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.26 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.24 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.22 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.22 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.21 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.2 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.2 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.19 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.19 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.19 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.16 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.15 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.11 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.09 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.09 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.99 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.99 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.97 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.96 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.95 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.9 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.88 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.87 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.87 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.86 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.85 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.83 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.82 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.81 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.8 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.79 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.76 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.76 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.73 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.72 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.72 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.69 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.69 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.64 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.6 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.59 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.58 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.53 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.46 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.43 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.32 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.31 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.29 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.2 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.2 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.14 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.07 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.05 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.0 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.95 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.95 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.93 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.86 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.86 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.82 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.8 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.78 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.72 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.56 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.54 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.43 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.42 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.31 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.22 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.03 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.93 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.86 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.85 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.81 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.77 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.71 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.62 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.48 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.4 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.35 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.24 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.23 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.06 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.97 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.71 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.67 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.66 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.6 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.47 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.37 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.27 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.25 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.93 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.8 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.65 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 94.62 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 94.61 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.56 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 94.46 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 94.1 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.95 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.94 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 93.8 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.7 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 93.7 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.75 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 92.56 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 92.48 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 92.39 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.76 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 91.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 91.33 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 90.96 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 90.77 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 89.57 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 89.56 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.15 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 88.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 87.99 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 87.93 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 87.8 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 87.74 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 87.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 87.54 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 86.93 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 86.37 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 83.77 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 83.65 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 83.42 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 81.64 |
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=321.85 Aligned_cols=296 Identities=19% Similarity=0.283 Sum_probs=229.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.++..+|+||.++|++++|+|++++|+||+.|++|++||..+++.+..+..|. ..+.++++++ +++.+++|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS--SCEEEEEECT--TSSEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCC--ccEEEEEECC--CCCEEEEEeCCCe
Confidence 46778999999999999999999999999999999999999988887777665 3478888887 5689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++||+.++.... ........|.. ...+.. +.+ +. .+++
T Consensus 121 v~iw~~~~~~~~~---~~~~~~~~h~~-----------------~v~~~~------------------~~~-~~--~l~s 159 (340)
T 1got_B 121 CSIYNLKTREGNV---RVSRELAGHTG-----------------YLSCCR------------------FLD-DN--QIVT 159 (340)
T ss_dssp EEEEETTTCSBSC---EEEEEEECCSS-----------------CEEEEE------------------EEE-TT--EEEE
T ss_pred EEEEECccCCCcc---eeEEEecCCCc-----------------cEEEEE------------------ECC-CC--cEEE
Confidence 9999997653110 00000000000 000000 001 11 2556
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++|++||+++++.+..+..+. ....++ .+.++ ...+++|+.||+|++||+++ ......
T Consensus 160 ~s~d~~i~~wd~~~~~~~~~~~~h~----------~~v~~~---~~~~~----~~~l~sg~~d~~v~~wd~~~-~~~~~~ 221 (340)
T 1got_B 160 SSGDTTCALWDIETGQQTTTFTGHT----------GDVMSL---SLAPD----TRLFVSGACDASAKLWDVRE-GMCRQT 221 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EECTT----SSEEEEEETTSCEEEEETTT-CSEEEE
T ss_pred EECCCcEEEEECCCCcEEEEEcCCC----------CceEEE---EECCC----CCEEEEEeCCCcEEEEECCC-CeeEEE
Confidence 7789999999999998877765321 111221 23332 23689999999999999986 456778
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|..+|.+++|+|++..+++++.|++|++||++.. ..........+...+.+++|+|++++|++|+.|++|++||+
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC--cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 8999999999999999999999999999999999753 22222221222346999999999999999999999999999
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+++.+..+.+|.+.|.+++|+|+|++|||||.|++|+|||
T Consensus 300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999997
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=332.89 Aligned_cols=317 Identities=14% Similarity=0.211 Sum_probs=233.5
Q ss_pred CCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 4 ~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
.|....+..+|+||.++|++++|+|++++|+|||.|++|+|||..+++.+..+..|.. .+.+++|++ +++.+++|+
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~--~g~~las~~ 127 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAP--NGQSVACGG 127 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECT--TSSEEEECC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECC--CCCEEEEee
Confidence 3555667889999999999999999999999999999999999999988888877754 477888887 678999999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|+++++||+.++...............| . +.+. ...+.+.+ ..
T Consensus 128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh----------~-----------------~~v~--------~~~~~~~~-~~ 171 (380)
T 3iz6_a 128 LDSACSIFNLSSQADRDGNMPVSRVLTGH----------K-----------------GYAS--------SCQYVPDQ-ET 171 (380)
T ss_dssp SSSCCEEEECCCCSSCCCSSTTCCBCCCC----------S-----------------SCCC--------CCBCCSSS-SS
T ss_pred CCCcEEEEECCCCccccCCccceeeccCC----------C-----------------cceE--------EEEEecCC-CC
Confidence 99999999997642110000000000000 0 0000 00011111 22
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.+++|+.|++|++||+++++.+..+..... .++ .....++ .+.+ .+...+++|+.||+|++||++....
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~---~~h--~~~v~~~---~~~~---~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFP---SGH--TADVLSL---SINS---LNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSS---SSC--CSCEEEE---EECS---SSCCEEEEEETTSCEEEEETTTTCC
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccC---CCC--ccCeEEE---Eeec---CCCCEEEEEECCCeEEEEECCCCCc
Confidence 366788899999999999987766532110 011 1111111 1221 1233689999999999999986566
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee---ecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
.+..+.+|..+|.+++|+|++..+++++.|++|++||++.......+.... ..+...+.+++|+|++++|++|+.||
T Consensus 241 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 778889999999999999999999999999999999997542211111110 11123488999999999999999999
Q ss_pred eEEEEEccCCeEEEEe----cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 321 RVRIYNYRKGSALAIL----KYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~----~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.|++||+..++.+..+ .+|.+.|.+++|+|||++|+|||.|++|++|++..
T Consensus 321 ~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 9999999998887776 68999999999999999999999999999999864
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=329.50 Aligned_cols=291 Identities=17% Similarity=0.273 Sum_probs=230.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+...+.||.++|++++|+|++.+|+||+.|++|+|||..+++....+.+|.. .+.+++|++ +++.|++|+.|++|
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~--~V~~v~~~~--~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD--SVQDISFDH--SGKLLASCSADMTI 174 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS--CEEEEEECT--TSSEEEEEETTSCC
T ss_pred CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC--cEEEEEEcC--CCCEEEEEeCCCeE
Confidence 44678999999999999999999999999999999999999988888888764 478888887 56899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.++++. .....|...+ .+.. +.+ ++. +++++
T Consensus 175 ~iwd~~~~~~~-------~~~~~h~~~V-----------------~~v~------------------~~p-~~~-~l~s~ 210 (410)
T 1vyh_C 175 KLWDFQGFECI-------RTMHGHDHNV-----------------SSVS------------------IMP-NGD-HIVSA 210 (410)
T ss_dssp CEEETTSSCEE-------ECCCCCSSCE-----------------EEEE------------------ECS-SSS-EEEEE
T ss_pred EEEeCCCCcee-------EEEcCCCCCE-----------------EEEE------------------EeC-CCC-EEEEE
Confidence 99999875421 1111110000 0000 111 122 45677
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|++|++||+++++++..+..+. ....+ ..+.+ ....+++|+.||+|++||++. ......+
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~----------~~v~~---~~~~~----~g~~l~s~s~D~~v~vwd~~~-~~~~~~~ 272 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHR----------EWVRM---VRPNQ----DGTLIASCSNDQTVRVWVVAT-KECKAEL 272 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCS----------SCEEE---EEECT----TSSEEEEEETTSCEEEEETTT-CCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEeCCC----------ccEEE---EEECC----CCCEEEEEcCCCeEEEEECCC-CceeeEe
Confidence 889999999999998877765421 11111 12322 223689999999999999986 4456778
Q ss_pred ecCccCeEEEEEecC--------------------CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 249 KVHLEPVLCLSIDES--------------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~--------------------~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.+|...|.++.|+|+ +..+++|+.|++|++||++.. .+. ..+..|...|.+++|+|
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~--~~~~~h~~~v~~v~~~~ 348 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCL--MTLVGHDNWVRGVLFHS 348 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEE--EEEECCSSCEEEEEECS
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--ceE--EEEECCCCcEEEEEEcC
Confidence 899999999999875 557899999999999999643 332 34556778899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++++|++|+.||+|++||+.+++++.++.+|...|.+++|+|++++|||||.|++|++|++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=316.87 Aligned_cols=303 Identities=18% Similarity=0.258 Sum_probs=229.8
Q ss_pred CCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
...++..+|+||.++|++++|+|++.+|+|||.|++|+|||..+++....+..|. ..+.++++++ +++.+++|+.|
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~--~~v~~~~~sp--~g~~lasg~~d 127 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--TWVMACAYAP--SGCAIACGGLD 127 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCCCEEEECT--TSSEEEEESTT
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC--CCEEEEEECC--CCCEEEEeeCC
Confidence 3446788999999999999999999999999999999999998888777666554 3477888887 67899999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
+++++|++..+....... .......|...+ .+. .+.+.+ . .+
T Consensus 128 ~~i~v~~~~~~~~~~~~~-~~~~~~~h~~~v-----------------~~~------------------~~~~~~-~-~l 169 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAA-KKKSVAMHTNYL-----------------SAC------------------SFTNSD-M-QI 169 (354)
T ss_dssp SEEEEEECCCCTTCCSGG-GCEEEEECSSCE-----------------EEE------------------EECSSS-S-EE
T ss_pred CCEEEEEEeccccccccc-cceeeeccCCcE-----------------EEE------------------EEeCCC-C-EE
Confidence 999999997542111000 000000000000 000 011111 2 35
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++++.|++|++||+++++.+..+..+. ....++ .+.+. .....+++|+.||+|++||+++ ...+
T Consensus 170 ~t~s~D~~v~lwd~~~~~~~~~~~~h~----------~~v~~~---~~~~~--~~g~~l~sgs~Dg~v~~wd~~~-~~~~ 233 (354)
T 2pbi_B 170 LTASGDGTCALWDVESGQLLQSFHGHG----------ADVLCL---DLAPS--ETGNTFVSGGCDKKAMVWDMRS-GQCV 233 (354)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEE---EECCC--SSCCEEEEEETTSCEEEEETTT-CCEE
T ss_pred EEEeCCCcEEEEeCCCCeEEEEEcCCC----------CCeEEE---EEEeC--CCCCEEEEEeCCCeEEEEECCC-CcEE
Confidence 577789999999999999877775421 112222 23222 1123689999999999999986 4567
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..+.+|..+|.+++|+|++..+++++.|++|++||++... .........+...+.+++|+|++++|++|+.|++|++|
T Consensus 234 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 7888999999999999999999999999999999997542 22222112223468899999999999999999999999
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
|+.+++.+..+.+|.+.|.+++|+|||++|||||.|++|++|+
T Consensus 312 d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=308.01 Aligned_cols=290 Identities=17% Similarity=0.299 Sum_probs=223.7
Q ss_pred CeEEeecCCCceeEEEEeCC----CCEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 10 PVAVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~----~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
....+++|.++|++|+|+++ +.+|+|||.|++|+|||..+++. ...+.+|. ..+.++.+++ ++..+++++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~--~~v~~~~~~~--~~~~l~s~s 99 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ--LGVVSVDISH--TLPIAASSS 99 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECS--SSSEEEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCC--CCEEEEEECC--CCCEEEEEe
Confidence 44667799999999999874 56899999999999999876653 23455665 3578888877 567899999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|++||+||+.+++... .+..... ...+. .+.++ ..
T Consensus 100 ~D~~i~lWd~~~~~~~~----~~~~~~~--------------------~~~~~------------------~~spd-g~- 135 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIK----SIDAGPV--------------------DAWTL------------------AFSPD-SQ- 135 (321)
T ss_dssp TTSEEEEEETTTTEEEE----EEECCTT--------------------CCCCE------------------EECTT-SS-
T ss_pred CCCcEEEEECCCCCEEE----EEeCCCc--------------------cEEEE------------------EECCC-CC-
Confidence 99999999998763210 0000000 00000 01122 23
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++++.|+.|++||+++++....+..+. ....+ ..+.++ ...+++|+.||.|++||+++ ..
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~~----------~~v~~---~~~spd----g~~lasg~~dg~i~iwd~~~-~~ 197 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGKKEYSLDTRG----------KFILS---IAYSPD----GKYLASGAIDGIINIFDIAT-GK 197 (321)
T ss_dssp EEEEECTTSEEEEEETTTCSEEEEEECSS----------SCEEE---EEECTT----SSEEEEEETTSCEEEEETTT-TE
T ss_pred EEEEEcCCCcEEEEEcCCCceeEEecCCC----------ceEEE---EEECCC----CCEEEEEcCCCeEEEEECCC-Cc
Confidence 45677789999999999988766654321 01111 134332 23689999999999999986 45
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+..+.+|..+|.+++|+|++..+++++.|++|++||++... ....+..|...|.+++|+|++++|++++.|++|+
T Consensus 198 ~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 677888999999999999999999999999999999997543 2234566778899999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+||+.+++++.++.+|...|.+++|+|++++|++++.|++|++||.
T Consensus 274 iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 274 VWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=294.29 Aligned_cols=295 Identities=15% Similarity=0.197 Sum_probs=222.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.++..+|++|.+.|++|+|+|++++|+||+.|++|++||+.+++.+..+..|.. .+.++.|++ +++.+++|+.|++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET--PVRAGKFIA--RKNWIIVGSDDFR 78 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEEEG--GGTEEEEEETTSE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC--cEEEEEEeC--CCCEEEEECCCCE
Confidence 357889999999999999999999999999999999999999988888776653 477778876 6689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
||+||+.+++.. ..+..+...... .. +.+. .. ++++
T Consensus 79 i~vwd~~~~~~~----~~~~~h~~~v~~--------------------~~------------------~~~~-~~-~l~s 114 (304)
T 2ynn_A 79 IRVFNYNTGEKV----VDFEAHPDYIRS--------------------IA------------------VHPT-KP-YVLS 114 (304)
T ss_dssp EEEEETTTCCEE----EEEECCSSCEEE--------------------EE------------------ECSS-SS-EEEE
T ss_pred EEEEECCCCcEE----EEEeCCCCcEEE--------------------EE------------------EcCC-CC-EEEE
Confidence 999999887421 011110000000 00 1111 12 4668
Q ss_pred ccCCCeEEEEecCCCceeE-EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
|+.|++|++||++++..+. .+..+ .....+ ..|.|. +...+++|+.||+|++||++.......
T Consensus 115 gs~D~~v~lWd~~~~~~~~~~~~~h----------~~~v~~---v~~~p~---~~~~l~sgs~D~~v~iwd~~~~~~~~~ 178 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQTFEGH----------EHFVMC---VAFNPK---DPSTFASGCLDRTVKVWSLGQSTPNFT 178 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEEEECCC----------CSCEEE---EEECTT---CTTEEEEEETTSEEEEEETTCSSCSEE
T ss_pred ECCCCeEEEEECCCCcchhhhhccc----------CCcEEE---EEECCC---CCCEEEEEeCCCeEEEEECCCCCccce
Confidence 8889999999999875433 33321 111122 134332 223689999999999999986544444
Q ss_pred eeecCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 247 AMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
...+|...+..+.+.+ ++..+++++.|++|++||++.. .+ ...+..|...+.+++|+|++++|++|+.||+|++
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i 254 (304)
T 2ynn_A 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254 (304)
T ss_dssp EECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--EE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred eccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--cc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE
Confidence 4456778899999965 6678999999999999999753 33 2445678888999999999999999999999999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYP 371 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~ 371 (374)
||..+++.++++..|.+.+++++|+|++. ++|+|+.|+ +.+|++..
T Consensus 255 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 99999999999999999999999999886 588887665 56777653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=293.94 Aligned_cols=295 Identities=15% Similarity=0.236 Sum_probs=214.5
Q ss_pred CCCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcc-----cceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
..+..+|+||+++|++|+|+|++ ++|+|||.|++|++||+.. +.++..+.+|. ..+.++++++ +++++++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~--dg~~l~s 82 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS--HIVQDCTLTA--DGAYALS 82 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS--SCEEEEEECT--TSSEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc--ccEEEEEECC--CCCEEEE
Confidence 35678899999999999999865 8999999999999999864 23455666675 4578888887 6789999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
++.|++||+||+.+++.. .....|...+ .+.. +.+ +
T Consensus 83 ~s~D~~v~~wd~~~~~~~-------~~~~~h~~~v-----------------~~~~------------------~~~-~- 118 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETY-------QRFVGHKSDV-----------------MSVD------------------IDK-K- 118 (319)
T ss_dssp EETTSEEEEEETTTTEEE-------EEEECCSSCE-----------------EEEE------------------ECT-T-
T ss_pred EeCCCEEEEEECCCCCee-------EEEccCCCcE-----------------EEEE------------------EcC-C-
Confidence 999999999999887421 1100010000 0000 011 1
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCC--CCceEEEEEecCCcEEEEecc
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS--QGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gs~dg~i~iwdl~ 239 (374)
..++++++.|++|++||++. +++..+..+. ....++ .+.+... .....+++++.|+.|++||++
T Consensus 119 ~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~----------~~v~~~---~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 119 ASMIISGSRDKTIKVWTIKG-QCLATLLGHN----------DWVSQV---RVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp SCEEEEEETTSCEEEEETTS-CEEEEECCCS----------SCEEEE---EECCC------CCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCC-CeEEEEeccC----------CcEEEE---EEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 12567888899999999974 4444443221 111111 2222211 122368999999999999997
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
. ......+.+|..+|.+++|+|++..+++++.|++|++||+... ... ..+.. ...+.+++|+|++.++++++.
T Consensus 185 ~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--~~~--~~~~~-~~~v~~~~~sp~~~~la~~~~- 257 (319)
T 3frx_A 185 Q-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK--KAM--YTLSA-QDEVFSLAFSPNRYWLAAATA- 257 (319)
T ss_dssp T-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEE--EEEEC-CSCEEEEEECSSSSEEEEEET-
T ss_pred c-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEE--EEecC-CCcEEEEEEcCCCCEEEEEcC-
Confidence 6 3456678899999999999999999999999999999999754 222 22232 356999999999999998774
Q ss_pred CeEEEEEccCCeEEEEec--------ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 320 RRVRIYNYRKGSALAILK--------YHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 320 g~v~iwd~~~~~~~~~~~--------~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.+++|++.....+..+. .|...+.+++|+|||++|++|+.|++|++|++..
T Consensus 258 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 569999998777666553 3456799999999999999999999999999854
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=296.93 Aligned_cols=295 Identities=19% Similarity=0.256 Sum_probs=202.7
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecC------CCcEEEEeCcccceeee----eeeeeceeeeEEeccCCcccccee
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTT------GGELRIWDTVQHRTVSS----SWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~------D~~v~vWd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
|.....+|++.|++|+|+|||++|+|||. |++|++|+..++.+... ...|. ..+.+++|++ + ..+
T Consensus 34 p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~--~~V~~~~~s~--d-~~~ 108 (357)
T 4g56_B 34 PVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTE--AGVTDVAWVS--E-KGI 108 (357)
T ss_dssp ------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECS--SCEEEEEEET--T-TEE
T ss_pred CCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCC--CCEEEEEEcC--C-CCE
Confidence 33445689999999999999999999998 67899999877654322 22333 3588899987 3 467
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
++++.|++||+||+.+++...........+.... .+.. +.++
T Consensus 109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V--------------------~~v~------------------~spd 150 (357)
T 4g56_B 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIV--------------------KTLS------------------VFSD 150 (357)
T ss_dssp EEEETTSCEEEC--------CCCCEEECCCSSCE--------------------EEEE------------------ECSS
T ss_pred EEEECCCEEEEeeccccceeEEEeeccCCCCCCE--------------------EEEE------------------ECCC
Confidence 7889999999999988753221111000000000 0000 1112
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
.+ ++++++.|++|++||+++++.+..+..+. ....++ .|.++ +...+++++.||+|++||++
T Consensus 151 -g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~----------~~v~~v---~~s~~---~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 151 -GT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHS----------SEVNCV---AACPG---KDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp -SS-EEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EECTT---CSSCEEEEETTSCEEECCTT
T ss_pred -CC-EEEEEeCCCeEEEEECCCCcEEEEEcCCC----------CCEEEE---EEccC---CCceeeeeccCCceEEEECC
Confidence 22 45677889999999999998877775321 111111 23332 22358899999999999998
Q ss_pred CCCCceee--eecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEE
Q 017296 240 NPGIPLTA--MKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAAT 315 (374)
Q Consensus 240 ~~~~~~~~--~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s 315 (374)
+.. +... +..|...+.+++|+|+. ..+++|+.|+.|++||++..... ..+..+...|.+++|+|++ ++||+
T Consensus 213 ~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 213 KPK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp SSS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EEECCCSSCEEEEEECSSSSCCEEE
T ss_pred CCc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EEEeccceeEEEEEEcCCCCCEEEE
Confidence 643 2322 34567789999999864 56788999999999999754322 2345567789999999987 57999
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecCCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~~~ 371 (374)
|+.|++|+|||+++++.+..+ +|.+.|.+|+|+| |+++|||+|.|++|++|++..
T Consensus 288 gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 288 ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999998877654 7999999999999 789999999999999999843
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=283.55 Aligned_cols=292 Identities=21% Similarity=0.289 Sum_probs=219.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+..++.||.++|++++|+|++++|++|+.|+.|++||..+++....+.+|. ..+.++++++ +++.|++++.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~~~d~~i 89 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSS--DSNLLVSASDDKTL 89 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC--CceEEEEEcC--CCCEEEEECCCCEE
Confidence 4678899999999999999999999999999999999999888877777665 3478888887 56899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+++++... .+....... .+.. +.+ ... +++++
T Consensus 90 ~vwd~~~~~~~~----~~~~~~~~v--------------------~~~~------------------~~~-~~~-~l~s~ 125 (312)
T 4ery_A 90 KIWDVSSGKCLK----TLKGHSNYV--------------------FCCN------------------FNP-QSN-LIVSG 125 (312)
T ss_dssp EEEETTTCCEEE----EEECCSSCE--------------------EEEE------------------ECS-SSS-EEEEE
T ss_pred EEEECCCCcEEE----EEcCCCCCE--------------------EEEE------------------EcC-CCC-EEEEE
Confidence 999998764210 110000000 0000 011 112 45677
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA- 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~- 247 (374)
+.|++|++||+++++.+..+..+. ....+ ..+.++ ...+++|+.||.|++||+++.. .+..
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~---~~~~~~----~~~l~~~~~d~~i~~wd~~~~~-~~~~~ 187 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHS----------DPVSA---VHFNRD----GSLIVSSSYDGLCRIWDTASGQ-CLKTL 187 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS----------SCEEE---EEECTT----SSEEEEEETTSCEEEEETTTCC-EEEEE
T ss_pred eCCCcEEEEECCCCEEEEEecCCC----------CcEEE---EEEcCC----CCEEEEEeCCCcEEEEECCCCc-eeeEE
Confidence 889999999999998777665321 11111 123332 2368999999999999998643 3333
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC---eEEEEECCCCCEEEEEeCCCeEEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG---ISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
...+..++.+++|+|++..+++++.|+.|++||++.. ... ..+..+... +......+++++|++|+.||+|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG--KCL--KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEE--EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEE--EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 3456778999999999999999999999999999643 322 223333322 223334478889999999999999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe--CCCcEEEecCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS--EDSTVALWELY 370 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s--~D~~v~~W~~~ 370 (374)
||+.+++.+..+.+|...|.+++|+|++++|++++ .|++|++|+.+
T Consensus 264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999999997 69999999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=286.80 Aligned_cols=295 Identities=16% Similarity=0.256 Sum_probs=212.7
Q ss_pred CCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcccc-----eeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
.+..+|+||++.|++|+|+|+ +++|+|||.|++|+|||+.+.+ +...+.+|. ..+.++++++ +++.++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~--~~V~~~~~s~--dg~~l~s~ 104 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS--HFVSDVVISS--DGQFALSG 104 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS--SCEEEEEECT--TSSEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC--CCEEEEEECC--CCCEEEEE
Confidence 356689999999999999997 6899999999999999987654 344555564 4588888887 67899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.|+.|++|+...+.... ......... .... . .....
T Consensus 105 ~~d~~i~~~~~~~~~~~~----~~~~~~~~~--------------------~~~~------------------~-~~~~~ 141 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTR----RFVGHTKDV--------------------LSVA------------------F-SSDNR 141 (340)
T ss_dssp ETTSEEEEEETTTTEEEE----EEECCSSCE--------------------EEEE------------------E-CTTSS
T ss_pred cccccceEEeecccceee----eecCCCCce--------------------eEEE------------------E-eecCc
Confidence 999999999997652100 000000000 0000 0 01112
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
++++++.|+.+++||+............ + .... ....+.+.. ....+++++.|+.|++||++. .
T Consensus 142 -~l~s~s~d~~~~~~d~~~~~~~~~~~~~-------~--~~~v---~~~~~~~~~--~~~~~~s~~~d~~i~i~d~~~-~ 205 (340)
T 4aow_A 142 -QIVSGSRDKTIKLWNTLGVCKYTVQDES-------H--SEWV---SCVRFSPNS--SNPIIVSCGWDKLVKVWNLAN-C 205 (340)
T ss_dssp -CEEEEETTSCEEEECTTSCEEEEECSSS-------C--SSCE---EEEEECSCS--SSCEEEEEETTSCEEEEETTT-T
T ss_pred -cceeecCCCeEEEEEeCCCceEEEEecc-------c--cCcc---cceEEccCC--CCcEEEEEcCCCEEEEEECCC-C
Confidence 3567778999999998876543322111 1 1111 111233222 223578899999999999986 4
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.....+.+|..+|.+++|+|++..+++++.|++|++||++.. ... ..+.. ...+.+++|+|++.++ +++.|++|
T Consensus 206 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~--~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i 279 (340)
T 4aow_A 206 KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHL--YTLDG-GDIINALCFSPNRYWL-CAATGPSI 279 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEE--EEEEC-SSCEEEEEECSSSSEE-EEEETTEE
T ss_pred ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC--cee--eeecC-CceEEeeecCCCCcee-eccCCCEE
Confidence 567778899999999999999999999999999999999754 222 22232 3569999999998655 56679999
Q ss_pred EEEEccCCeEEEEe---------cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 323 RIYNYRKGSALAIL---------KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 323 ~iwd~~~~~~~~~~---------~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++||++.+..+..+ .+|...|.+++|+|||++||||+.|++|+||++..+
T Consensus 280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99999887766544 368889999999999999999999999999998765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=292.97 Aligned_cols=290 Identities=15% Similarity=0.183 Sum_probs=204.0
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc-------cee--eeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-------RTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
..|...|.+++|+|||++|++++ |+++++||.... ... .....+.....+.+++|++ + +++++|+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d-~~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--E-RGILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--T-TEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--C-CeEEEEECC
Confidence 46788899999999999999988 778889984211 000 0001111223588888887 3 578999999
Q ss_pred CeEEEEecCCCCCCCCCceeeee-cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+||+||+.+++... ..+. ...|...+ .+.. +.++ ++ +
T Consensus 103 g~v~lWd~~~~~~~~----~~~~~~~~H~~~V-----------------~~v~------------------~spd-g~-~ 141 (344)
T 4gqb_B 103 GAVELWELDENETLI----VSKFCKYEHDDIV-----------------STVS------------------VLSS-GT-Q 141 (344)
T ss_dssp SEEEEEEECTTSSCE----EEEEEEECCSSCE-----------------EEEE------------------ECTT-SS-E
T ss_pred CEEEEEeccCCCcee----EeeccccCCCCCE-----------------EEEE------------------ECCC-CC-E
Confidence 999999999875321 1100 00000000 0000 1112 22 4
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++|+.|++|++||+++++++..+..+. ....++ .|.++ +...+++|+.||+|++||++.. .+
T Consensus 142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~----------~~V~~~---~~~~~---~~~~l~s~s~D~~v~iwd~~~~-~~ 204 (344)
T 4gqb_B 142 AVSGSKDICIKVWDLAQQVVLSSYRAHA----------AQVTCV---AASPH---KDSVFLSCSEDNRILLWDTRCP-KP 204 (344)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EECSS---CTTEEEEEETTSCEEEEETTSS-SC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCcC----------CceEEE---EecCC---CCCceeeecccccccccccccc-ce
Confidence 6678889999999999999888775431 111221 23332 2235889999999999999864 34
Q ss_pred eeee--ecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEEEeCCC
Q 017296 245 LTAM--KVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDR 320 (374)
Q Consensus 245 ~~~~--~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg 320 (374)
...+ ..|...+.++.+++. ...+++|+.|++|++||++..... ..+..|...|.+++|+|++ ++||+|+.|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~~~~h~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence 4444 345667999999875 456789999999999999754322 3456677889999999997 5799999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYP 371 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~ 371 (374)
+|+|||+.+++.+ .+.+|.+.|.+++|+|+++ +|+|+|.|++|++|++..
T Consensus 281 ~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 281 SLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp CEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred eEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999888755 5789999999999999987 678999999999999853
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=292.64 Aligned_cols=301 Identities=17% Similarity=0.202 Sum_probs=215.3
Q ss_pred CCeEEeecCCC-ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee---eeeeeceeeeEEeccCCccccceeeeccc
Q 017296 9 DPVAVLRGHRA-SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS---SWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 9 ~~~~~l~gH~~-~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
.++.+|.+|.+ .|++|+|+|+|++|+||+.|++|+|||..++..... ..+|. ..+.+++|++ ++++|++|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp--~g~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSP--CGNYLASASF 81 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECT--TSSEEEEEET
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccC--CcEEEEEECC--CCCEEEEEEC
Confidence 56788999998 999999999999999999999999999887653221 12444 3588899987 6789999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+++++||+..+.. ..+.....|...+ .+.. +.+ ++. +
T Consensus 82 D~~v~iw~~~~~~~-----~~~~~~~~h~~~v-----------------~~v~------------------~sp-~~~-~ 119 (345)
T 3fm0_A 82 DATTCIWKKNQDDF-----ECVTTLEGHENEV-----------------KSVA------------------WAP-SGN-L 119 (345)
T ss_dssp TSCEEEEEECCC-E-----EEEEEECCCSSCE-----------------EEEE------------------ECT-TSS-E
T ss_pred CCcEEEEEccCCCe-----EEEEEccCCCCCc-----------------eEEE------------------EeC-CCC-E
Confidence 99999999976521 0011100000000 0000 111 122 4
Q ss_pred EEcccCCCeEEEEecCCCcee---EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 165 AVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
+++++.|++|++||++++... ..+..+ . ....+ ..+.++ ...+++|+.|++|++||++..
T Consensus 120 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--------~--~~v~~---~~~~p~----~~~l~s~s~d~~i~~w~~~~~ 182 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSH--------T--QDVKH---VVWHPS----QELLASASYDDTVKLYREEED 182 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEEEEECCC--------C--SCEEE---EEECSS----SSCEEEEETTSCEEEEEEETT
T ss_pred EEEEECCCeEEEEECCCCCCeEEEEEecCc--------C--CCeEE---EEECCC----CCEEEEEeCCCcEEEEEecCC
Confidence 667788999999999876432 222211 1 11111 124433 235899999999999999764
Q ss_pred C-CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC-----------eEEEEEee-ecCCCCeEEEEECC
Q 017296 242 G-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG-----------SCVIKKEI-NLERPGISGTSIRP 308 (374)
Q Consensus 242 ~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~-----------~~~~~~~~-~~~~~~v~~~~~sp 308 (374)
. .....+.+|..+|.+++|+|++..+++++.|++|++||+..... .......+ ..|...|.+++|+|
T Consensus 183 ~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 262 (345)
T 3fm0_A 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262 (345)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT
T ss_pred CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec
Confidence 3 23467889999999999999999999999999999999632110 11111122 23667899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCe---------EEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCC
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGS---------ALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPP 372 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~ 372 (374)
++.+|++++.|++|++|+..... ....+.+|...|++|+|+|++. +|||||.|++|++|++..+
T Consensus 263 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 99999999999999999986542 1223468999999999999985 9999999999999998654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=296.82 Aligned_cols=291 Identities=20% Similarity=0.272 Sum_probs=215.2
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeece----------------eeeEEeccCCccccce
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----------------HGIVSVATGPSIGLNK 78 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 78 (374)
.+|.+.|++++|+|+|++|++|+ |++++||+..+++.+..+..|... ..+.+++|++ ++++
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--dg~~ 137 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DGKF 137 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TSSE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC--CCCE
Confidence 47999999999999999999987 789999999988877665544211 1367888887 6789
Q ss_pred eeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 79 l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
|++|+.|++|++||+.+++.. .....|...+ .+.. +.+
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~-------~~~~~h~~~v-----------------~~~~------------------~~p 175 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIV-------MILQGHEQDI-----------------YSLD------------------YFP 175 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEE-------EEECCCSSCE-----------------EEEE------------------ECT
T ss_pred EEEEcCCCeEEEEECCCCcEE-------EEEccCCCCE-----------------EEEE------------------EcC
Confidence 999999999999999876321 0000000000 0000 111
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
++ . .+++++.|++|++||++++++...+... ....+ ..+.+. ....+++|+.||.|++||+
T Consensus 176 ~~-~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~-----------~~v~~---~~~~~~---~~~~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 176 SG-D-KLVSGSGDRTVRIWDLRTGQCSLTLSIE-----------DGVTT---VAVSPG---DGKYIAAGSLDRAVRVWDS 236 (393)
T ss_dssp TS-S-EEEEEETTSEEEEEETTTTEEEEEEECS-----------SCEEE---EEECST---TCCEEEEEETTSCEEEEET
T ss_pred CC-C-EEEEecCCCcEEEEECCCCeeEEEEEcC-----------CCcEE---EEEECC---CCCEEEEEcCCCcEEEEEC
Confidence 22 2 3567778999999999999876655321 01111 123321 2236899999999999999
Q ss_pred cCCCCceeee-------ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe--------EEEEEeeecCCCCeEE
Q 017296 239 RNPGIPLTAM-------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS--------CVIKKEINLERPGISG 303 (374)
Q Consensus 239 ~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~--------~~~~~~~~~~~~~v~~ 303 (374)
+.. ..+..+ .+|...|.+++|++++..+++++.|++|++||++..... ......+..|...+.+
T Consensus 237 ~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 315 (393)
T 1erj_A 237 ETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315 (393)
T ss_dssp TTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred CCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence 763 333333 579999999999999999999999999999998643210 0112234567778999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC------CCCEEEEEeCCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS------DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp------~~~~las~s~D~~v~~W~~~ 370 (374)
++|+|++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+| ++++|||||.|++|++|++.
T Consensus 316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 99999999999999999999999999999999999999999999986 68899999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=313.84 Aligned_cols=343 Identities=16% Similarity=0.218 Sum_probs=223.3
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee-------eeeceeeeEEeccCCccccceee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-------VHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.+++.++.+|.+.|++++|+|+|++|+||+.|++|++||..+++++..+. +|. ..+.+++|++ ++++|+
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~--~~V~~v~~sp--dg~~l~ 255 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS--GSVFGLTWSP--DGTKIA 255 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS--SCEEEEEECT--TSSEEE
T ss_pred CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC--CCEEEEEECC--CCCEEE
Confidence 35677899999999999999999999999999999999998888776653 454 3588899987 678999
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecc-eeeeeeeeeccccccccccCCCC--cccccccCceeecCCCCCCC----
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPK--DCYEREVGETVDTDSLCDSK---- 153 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---- 153 (374)
|++.|++||+||+.++++.. .+.... .......+....... ....... ..+..+.+.... ....+..
T Consensus 256 s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l-~s~s~d~~i~~~~~~~~~~~~-~~~gh~~~v~~ 329 (611)
T 1nr0_A 256 SASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIWTKQAL-VSISANGFINFVNPELGSIDQ-VRYGHNKAITA 329 (611)
T ss_dssp EEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEECSSCE-EEEETTCCEEEEETTTTEEEE-EECCCSSCEEE
T ss_pred EEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEEcCCEE-EEEeCCCcEEEEeCCCCCcce-EEcCCCCCEEE
Confidence 99999999999998764311 111000 000000000000000 0000000 001111000000 0001111
Q ss_pred CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccC--CC-----------------------------------
Q 017296 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--GS----------------------------------- 196 (374)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~--~~----------------------------------- 196 (374)
..+.+ +++ ++++++.|++|++||+.+++....+...... ..
T Consensus 330 l~~sp-dg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~ 407 (611)
T 1nr0_A 330 LSSSA-DGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVA 407 (611)
T ss_dssp EEECT-TSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCE
T ss_pred EEEeC-CCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceee
Confidence 01122 333 4567778999999999987654432110000 00
Q ss_pred ---------CCcCCCCCcc-----------------------eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-
Q 017296 197 ---------PNFSSKGRGM-----------------------CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 243 (374)
Q Consensus 197 ---------~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~- 243 (374)
..+++.+... ......|.| +...+++|+.|++|++||+.....
T Consensus 408 ~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp----dg~~lasgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 408 NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN----DKQFVAVGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp EECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT----TSCEEEEEETTSEEEEEEEETTEEE
T ss_pred eecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC----CCCEEEEeCCCCeEEEEEccCCcee
Confidence 0000000000 000112322 233689999999999999975321
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.... .+|...|.+++|+|++..+++++.|++|++||+... +..........|...|.+++|+||+++||+|+.|++|+
T Consensus 484 ~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 484 EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-CceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 1233 679999999999999999999999999999998641 12111112234778899999999999999999999999
Q ss_pred EEEccCCe-EE-EEeccc-CCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 324 IYNYRKGS-AL-AILKYH-HATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 324 iwd~~~~~-~~-~~~~~h-~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+||+.+++ .+ ..+.+| ...|.+++|+|+++ |||++.|++|++|++
T Consensus 562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred EEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 99998765 33 567789 89999999999998 999999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=285.05 Aligned_cols=297 Identities=18% Similarity=0.258 Sum_probs=209.4
Q ss_pred CCeEEeecCCCceeEEEE-----eC-CCCEEEEecCCCcEEEEeCccc-------ceeeeeeeeeceeeeEEeccCCccc
Q 017296 9 DPVAVLRGHRASVTDVCF-----HQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG 75 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~-----~~-~~~~l~s~s~D~~v~vWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (374)
++..+|+||++.|++|+| ++ ++++|+||+.|++|++||+.+. .+...+.+|. ..+.++++++ +
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~--~ 87 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN--HFVSDLALSQ--E 87 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCS--SCEEEEEECS--S
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCC--CceEEEEECC--C
Confidence 467889999999999999 66 8999999999999999998643 3344555665 3578888887 5
Q ss_pred cceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCC
Q 017296 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155 (374)
Q Consensus 76 ~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (374)
+..+++++.|++||+||+++++.. ..+..+..... +..
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~----~~~~~h~~~v~--------------------~v~------------------ 125 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTY----KRFVGHQSEVY--------------------SVA------------------ 125 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEE----EEEECCCSCEE--------------------EEE------------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE----EEEcCCCCcEE--------------------EEE------------------
Confidence 678999999999999999886421 01100000000 000
Q ss_pred CCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCC------CCceEEEEEec
Q 017296 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS------QGFVNVLAGYE 229 (374)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~gs~ 229 (374)
+.++ .. ++++++.|++|++||+.... ....... ..+ .....+ ..+.+... .....+++++.
T Consensus 126 ~sp~-~~-~l~s~~~d~~i~~wd~~~~~-~~~~~~~-----~~~--~~~v~~---~~~~~~~~~~~~~~~~~~~l~s~~~ 192 (343)
T 2xzm_R 126 FSPD-NR-QILSAGAEREIKLWNILGEC-KFSSAEK-----ENH--SDWVSC---VRYSPIMKSANKVQPFAPYFASVGW 192 (343)
T ss_dssp ECSS-TT-EEEEEETTSCEEEEESSSCE-EEECCTT-----TSC--SSCEEE---EEECCCCCSCSCCCSSCCEEEEEET
T ss_pred ECCC-CC-EEEEEcCCCEEEEEeccCCc-eeeeecc-----cCC--Cceeee---eeeccccccccccCCCCCEEEEEcC
Confidence 1112 23 34567789999999997432 2222110 001 111111 12332210 11136899999
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
||.|++||.. ......+.+|..+|.+++|+|++..+++++.|++|++||+........ ... +...+.+++|+|+
T Consensus 193 d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~~-~~~~v~~v~~sp~ 266 (343)
T 2xzm_R 193 DGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EFD-AGSTINQIAFNPK 266 (343)
T ss_dssp TSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EEE-CSSCEEEEEECSS
T ss_pred CCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---eec-CCCcEEEEEECCC
Confidence 9999999953 345667889999999999999999999999999999999943321111 111 2346999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEE--Eec-----------ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALA--ILK-----------YHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~--~~~-----------~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++++++ +.|+.|++||+.+++... .+. +|...|.+++|+|+|++||+|+.|++|++|++..
T Consensus 267 ~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 267 LQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 988775 468899999998765433 343 6888999999999999999999999999999854
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=281.16 Aligned_cols=304 Identities=16% Similarity=0.197 Sum_probs=205.7
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeee-ee-eeceeeeEEeccCCccccceeeec
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSS-WV-HSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
..+++.+|++|+++|++++|+++ +|+||+.|++|++||+..+. .+..+ .. |. ..+.+++|++ ++++|+++
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~las~ 76 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHK--KAIRSVAWRP--HTSLLAAG 76 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCC--SCEEEEEECT--TSSEEEEE
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCcc--CCEEEEEECC--CCCEEEEE
Confidence 34578899999999999999987 99999999999999997653 33333 12 43 3588899987 56899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.|++|++||+..+.........+.....|...+ .+. .+.++ +.
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V-----------------~~v------------------~~sp~-g~ 120 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV-----------------KGV------------------AWSND-GY 120 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CE-----------------EEE------------------EECTT-SC
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcE-----------------EEE------------------EECCC-CC
Confidence 9999999999964311000000000000000000 000 01112 23
Q ss_pred eEEEcccCCCeEEEEecCCC----ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 163 YMAVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
++++++.|++|++||++.. +++..+..+ . ....+ ..+.|+ ...+++|+.|++|++||+
T Consensus 121 -~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h--------~--~~v~~---v~~~p~----~~~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 121 -YLATCSRDKSVWIWETDESGEEYECISVLQEH--------S--QDVKH---VIWHPS----EALLASSSYDDTVRIWKD 182 (330)
T ss_dssp -EEEEEETTSCEEEEECCTTCCCCEEEEEECCC--------S--SCEEE---EEECSS----SSEEEEEETTSCEEEEEE
T ss_pred -EEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--------C--CceEE---EEECCC----CCEEEEEcCCCeEEEEEC
Confidence 4667788999999999532 233333321 1 11111 134432 236999999999999998
Q ss_pred cCCC-CceeeeecCccCeEEEEEecC--CCceEEEecCCeEEEEEcCCCCC----eEEEEEeee-cCCCCeEEEEECCCC
Q 017296 239 RNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTG----SCVIKKEIN-LERPGISGTSIRPDS 310 (374)
Q Consensus 239 ~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~----~~~~~~~~~-~~~~~v~~~~~sp~~ 310 (374)
+... .++..+.+|...|.++.|+++ +..+++++.|++|++||++.... .......+. .|...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 262 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC
Confidence 7532 356778899999999999987 56789999999999999864211 111122222 266789999999766
Q ss_pred CEEEEEeCCCeEEEEEccCCe--EEEE-ecccCC-ceEEEEEeC--CCCEEEEEeCCCcEEEecCCC
Q 017296 311 KIAATAGWDRRVRIYNYRKGS--ALAI-LKYHHA-TCNAVSFSS--DCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~~~~--~~~~-~~~h~~-~v~~v~~sp--~~~~las~s~D~~v~~W~~~~ 371 (374)
+|++++.||+|++||..+++ .+.. +.+|.. .|.+++|+| ++++|||||.|++|+||++..
T Consensus 263 -~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 -LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred -EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 78999999999999998774 3333 357887 899999999 788999999999999999864
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=306.54 Aligned_cols=312 Identities=17% Similarity=0.244 Sum_probs=214.0
Q ss_pred CCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
++...+.||.+.|++++|+|++. +|+||+.|++|++||..+++++..+.+|.. .+.+++|++ ++++|+|++.|++
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~--~V~~v~fsp--dg~~las~s~D~~ 213 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNP--DGSLFASTGGDGT 213 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--CEEEEEECT--TSSEEEEEETTSC
T ss_pred CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC--ceEEEEECC--CCCEEEEEECCCc
Confidence 34567899999999999999987 699999999999999988888878877763 488899988 6789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
||+||+.+++... .+.... . . ... + .+.+.. ..+.++ ++ ++++
T Consensus 214 i~lwd~~~g~~~~----~~~~~~------------~-~--~~~--h------~~~V~~--------v~~spd-g~-~l~s 256 (611)
T 1nr0_A 214 IVLYNGVDGTKTG----VFEDDS------------L-K--NVA--H------SGSVFG--------LTWSPD-GT-KIAS 256 (611)
T ss_dssp EEEEETTTCCEEE----ECBCTT------------S-S--SCS--S------SSCEEE--------EEECTT-SS-EEEE
T ss_pred EEEEECCCCcEee----eecccc------------c-c--ccc--c------CCCEEE--------EEECCC-CC-EEEE
Confidence 9999998764210 000000 0 0 000 0 000000 001112 22 3456
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCC---------------------------------CcCCCCCcceeEEEeee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSP---------------------------------NFSSKGRGMCMAVQAYL 214 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 214 (374)
++.|++|++||+++++++..+......... ...+.... ....+.
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v---~~l~~s 333 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAI---TALSSS 333 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCE---EEEEEC
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCE---EEEEEe
Confidence 667788888888877765554321000000 00000011 111233
Q ss_pred cCCCCCceEEEEEecCCcEEEEeccCCCCceeee-e--------------------------------------------
Q 017296 215 PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-K-------------------------------------------- 249 (374)
Q Consensus 215 ~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~-~-------------------------------------------- 249 (374)
++ ...+++++.|++|++||+.+... ...+ .
T Consensus 334 pd----g~~l~s~s~D~~v~~Wd~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 334 AD----GKTLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp TT----SSEEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred CC----CCEEEEEeCCCcEEEEECCCCce-eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeee
Confidence 32 23688899999999999864211 0000 0
Q ss_pred -------------------------------------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 250 -------------------------------------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 250 -------------------------------------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
.|...+.+++|+|++..+++|+.|++|++||++... .....
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~--~~~~~ 486 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--VSEVK 486 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--EEEEE
T ss_pred ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc--eeeee
Confidence 123457788999999999999999999999996532 21112
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC-CeEEEE--ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSALAI--LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-~~~~~~--~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
. ..|...|.+++|+||+++|++++.|++|++||+.+ ++.+.. +.+|...|++++|+|||++|||+|.|++|++|++
T Consensus 487 ~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 487 T-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred c-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 2 45677899999999999999999999999999987 665443 3459999999999999999999999999999999
Q ss_pred CCC
Q 017296 370 YPP 372 (374)
Q Consensus 370 ~~~ 372 (374)
..+
T Consensus 566 ~~~ 568 (611)
T 1nr0_A 566 NKP 568 (611)
T ss_dssp TCT
T ss_pred CCc
Confidence 754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=275.46 Aligned_cols=259 Identities=17% Similarity=0.225 Sum_probs=196.6
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc--cceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.++.+|.+.|++++|+++|++|+||+.|++|+|||+.. .+.+..+.+|.. .|.+++|++..+++.|+||+.|++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~--~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG--PVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS--CEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC--CeEEEEecCCCcCCEEEEEcCCCEE
Confidence 467899999999999999999999999999999999864 356677777763 4888888764446899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+||+++++... ... ..+
T Consensus 80 ~iWd~~~~~~~~--~~~------------------------------------------------------------~~~ 97 (297)
T 2pm7_B 80 MIWKEENGRWSQ--IAV------------------------------------------------------------HAV 97 (297)
T ss_dssp EEEEBSSSCBCC--CEE------------------------------------------------------------ECC
T ss_pred EEEEcCCCceEE--EEE------------------------------------------------------------eec
Confidence 999998653100 000 000
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-ceee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~-~~~~ 247 (374)
....| .. ..+.++. ....+++|+.||+|++||++.... ....
T Consensus 98 -h~~~v-----------~~-----------------------v~~~p~~--~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 98 -HSASV-----------NS-----------------------VQWAPHE--YGPMLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp -CSSCE-----------EE-----------------------EEECCGG--GCSEEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred -CCCce-----------eE-----------------------EEeCcCC--CCcEEEEEECCCcEEEEEecCCCceeeee
Confidence 00000 00 0111110 012588899999999999976422 2355
Q ss_pred eecCccCeEEEEEecC-------------CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC---C
Q 017296 248 MKVHLEPVLCLSIDES-------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS---K 311 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~-------------~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~ 311 (374)
+.+|...|.+++|+|. +..+++|+.|++|++||++...........+..|...|.+++|+|++ +
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 7789999999999876 45799999999999999976544444445667788899999999984 8
Q ss_pred EEEEEeCCCeEEEEEccCCe---EEEEe--cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 312 IAATAGWDRRVRIYNYRKGS---ALAIL--KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~---~~~~~--~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+||+++.|++|++||+.+++ ....+ ..|...|.+++|+|+|++||+++.|++|+||+..
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999999997642 12233 4688899999999999999999999999999875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=275.71 Aligned_cols=303 Identities=17% Similarity=0.230 Sum_probs=224.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
....|.+|.++|++|+|+|++++|++|+.|+.|++||+.+++.+..+..|.. .+.++++++ ++++|++++.|++|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~--~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG--TIWSIDVDC--FTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSS--CEEEEEECT--TSSEEEEEETTTEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC--cEEEEEEcC--CCCEEEEEeCCCeEE
Confidence 4467899999999999999999999999999999999999988888877753 478888887 568999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||+.+++... ... ...... +.. +.+ +..++ +++.
T Consensus 100 iwd~~~~~~~~----~~~-~~~~v~--------------------~~~------------------~~~-~~~~l-~~~~ 134 (369)
T 3zwl_B 100 LWDVSNGQCVA----TWK-SPVPVK--------------------RVE------------------FSP-CGNYF-LAIL 134 (369)
T ss_dssp EEETTTCCEEE----EEE-CSSCEE--------------------EEE------------------ECT-TSSEE-EEEE
T ss_pred EEECCCCcEEE----Eee-cCCCeE--------------------EEE------------------Ecc-CCCEE-EEec
Confidence 99998764211 000 000000 000 111 22333 3444
Q ss_pred CC-----CeEEEEecCCCceeEEeccCccCCCC-CcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 170 QL-----SEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 170 ~d-----~~i~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.+ +.|++||++++.....+......... ......... .....+.+ ....+++++.||.|++||++....
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~ 209 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA-ATVAGWST----KGKYIIAGHKDGKISKYDVSNNYE 209 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC-EEEEEECG----GGCEEEEEETTSEEEEEETTTTTE
T ss_pred CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc-eeEEEEcC----CCCEEEEEcCCCEEEEEECCCCcE
Confidence 45 89999999876532222110000000 000000001 11112333 223688999999999999987556
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC---
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR--- 320 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--- 320 (374)
....+..|..+|.++.|++++..+++++.|+.|++||++... ... .+. +...+..++|+|+++++++++.++
T Consensus 210 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (369)
T 3zwl_B 210 YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLK--KYE-TDCPLNTAVITPLKEFIILGGGQEAKD 284 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEE--EEE-CSSCEEEEEECSSSSEEEEEECCC---
T ss_pred eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--eee--eec-CCCCceeEEecCCCceEEEeecCCCce
Confidence 677888899999999999999999999999999999997543 222 222 446799999999999999999998
Q ss_pred -----------eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 321 -----------RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 321 -----------~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+++||..+++.+..+.+|...|.+++|+|++++|++++.|++|++|++..
T Consensus 285 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 285 VTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ----------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred EEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 899999999999999999999999999999999999999999999999853
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=282.12 Aligned_cols=299 Identities=12% Similarity=0.102 Sum_probs=200.6
Q ss_pred CCceeEEEEeCCCCEEEEecCCC-------cEEEEeCcccceee----------eeeeeeceeeeEEeccCC-------c
Q 017296 18 RASVTDVCFHQTKPILFAGTTGG-------ELRIWDTVQHRTVS----------SSWVHSAAHGIVSVATGP-------S 73 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~-------~v~vWd~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------~ 73 (374)
.-||++++|+|++++|++||.|. .|++|++..+.... .+..|. ..+++++++. .
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~--~~v~s~~~~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND--DSPTAIDASKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS--CCCCEEEEETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC--CceEEEEeCCCEEEEEEC
Confidence 45899999999999999997654 59999976543211 111111 1244444322 1
Q ss_pred cccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC
Q 017296 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (374)
Q Consensus 74 ~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (374)
.+...+++++.|+++|+|++..+.. .... ..... .. ...... ..+..
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~----~~~~---------~~~~~--~~---~~~~~~--------~~~~~------- 138 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVND----QLEF---------LTSVD--FD---ASTNAD--------DYTKL------- 138 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTT----EEEE---------EEEEC--SS---CCCCTT--------CCEEE-------
T ss_pred CCccEEEEecCCCcEEEEEecCCCc----eEEE---------eeeec--ee---ecCCcc--------cCEEE-------
Confidence 1223456677889999999876421 0000 00000 00 000000 00000
Q ss_pred CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcE
Q 017296 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (374)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i 233 (374)
..+.++++.+.+++++.|++|+|||+++++.+..+.... ....+ .|.|+ + ..+++++.+ .+
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~-----------~V~~v---~fspd---g-~~l~s~s~~-~~ 199 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG-----------EVKDL---HFSTD---G-KVVAYITGS-SL 199 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS-----------CCCEE---EECTT---S-SEEEEECSS-CE
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC-----------ceEEE---EEccC---C-ceEEeccce-eE
Confidence 012344444445677789999999999998877764221 11111 34443 2 257777754 56
Q ss_pred EEEeccCCCCc-eeeeecCccCeEEEEEecCCCceEEEecCC----eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 234 LVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 234 ~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~----~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
++|+....... ......|...|.+++|+|++..+++++.|+ .+++|++............+..|...|++++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 200 EVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp EEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred EEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 66666543322 234567889999999999999999999887 6888988654433333445666778899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
|+++||+|+.|++|+|||+++++++.++ .+|...|++|+|+|||++|||+|.|++||||++-
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999999999999999999875 7899999999999999999999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=291.15 Aligned_cols=285 Identities=22% Similarity=0.348 Sum_probs=218.2
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++..+.+|...|++++|+|++++|++++.|++|++||.. ++.+..+.+|. ..+.++++++ +++.+++++.|++
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~--~~v~~~~~s~--~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHS--SSVWGVAFSP--DGQTIASASDDKT 367 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSE
T ss_pred CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCC--CCEEEEEECC--CCCEEEEEeCCCE
Confidence 35677889999999999999999999999999999999975 44555666664 3577888887 6789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||.. ++.. ..+........ +. .+.+ ++++ +++
T Consensus 368 v~~~~~~-~~~~----~~~~~~~~~v~--------------------~~------------------~~s~-dg~~-l~~ 402 (577)
T 2ymu_A 368 VKLWNRN-GQLL----QTLTGHSSSVR--------------------GV------------------AFSP-DGQT-IAS 402 (577)
T ss_dssp EEEEETT-CCEE----EEEECCSSCEE--------------------EE------------------EECT-TSSC-EEE
T ss_pred EEEEcCC-CCEE----EEecCCCCCeE--------------------EE------------------EECC-CCCE-EEE
Confidence 9999964 2210 00000000000 00 0111 2233 456
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|+.|++||. +++.+..+..+. ....+ ..|.++ ...+++++.|++|++||+. ...+..
T Consensus 403 ~~~d~~v~~~~~-~~~~~~~~~~~~----------~~v~~---~~~s~d----~~~l~~~~~d~~v~~w~~~--~~~~~~ 462 (577)
T 2ymu_A 403 ASDDKTVKLWNR-NGQLLQTLTGHS----------SSVWG---VAFSPD----DQTIASASDDKTVKLWNRN--GQLLQT 462 (577)
T ss_dssp EETTSEEEEECT-TCCEEEEEECCS----------SCEEE---EEECTT----SSEEEEEETTSEEEEEETT--SCEEEE
T ss_pred EeCCCEEEEEeC-CCCEEEEecCCC----------CCeEE---EEECCC----CCEEEEEcCCCEEEEEECC--CCEEEE
Confidence 677899999995 455555554321 11111 134433 2368999999999999974 456778
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|..+|.+++|+|++..+++++.|++|++||... .+ ...+..|...|.+++|+|++++|++++.||+|++||.
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---CE--EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---CE--EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 889999999999999999999999999999999642 22 2345667788999999999999999999999999996
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+++.+.++.+|.+.|++++|+|||++|+|+|.|++|++||
T Consensus 538 -~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 7888999999999999999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=288.03 Aligned_cols=301 Identities=23% Similarity=0.338 Sum_probs=218.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++...|+||++.|++|+|+|+|++|+||+.|++|+|||. +++++..+.+|. ..|.+++|++ ++++|++++.|++|
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~--~~V~~l~fsp--dg~~las~~~d~~i 81 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSP--DGQTIASASDDKTV 81 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCC--CCEEEEEECC--CCCEEEEEeCCCEE
Confidence 456789999999999999999999999999999999995 678888888886 4588999988 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||.. ++. ...+..+......+ .+.+ +.+ +++++
T Consensus 82 ~vWd~~-~~~----~~~~~~~~~~v~~~--------------------------------------~~s~-d~~-~l~~~ 116 (577)
T 2ymu_A 82 KLWNRN-GQL----LQTLTGHSSSVRGV--------------------------------------AFSP-DGQ-TIASA 116 (577)
T ss_dssp EEEETT-SCE----EEEECCCSSCEEEE--------------------------------------EECT-TSS-EEEEE
T ss_pred EEEECC-CCE----EEEEECCCCCEEEE--------------------------------------EECC-CCC-EEEEE
Confidence 999964 321 00110000000000 0111 223 34566
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcc---------------------------eeEEEeeecCCCCCc
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM---------------------------CMAVQAYLPSKSQGF 221 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~ 221 (374)
+.|+.+++|+....................+.+....+ .+....+.+ ..
T Consensus 117 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~ 192 (577)
T 2ymu_A 117 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP----DG 192 (577)
T ss_dssp ETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT----TS
T ss_pred cCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecC----CC
Confidence 77889999987654322111100000000000000000 000011222 12
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
..+++++.||.|++||.. ...+..+.+|..+|.+++|++++..+++++.|+.|++||.+. .. ...+..|...+
T Consensus 193 ~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~---~~--~~~~~~~~~~v 265 (577)
T 2ymu_A 193 QTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QL--LQTLTGHSSSV 265 (577)
T ss_dssp SCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---CE--EEEECCCSSCE
T ss_pred CEEEEEcCCCEEEEEeCC--CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC---CE--EEEEecCCCCE
Confidence 358899999999999964 456778889999999999999999999999999999999753 22 23455677889
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+++|+|+++++++++.|++|++||. +++.+..+.+|...|.+++|+|++++|++++.|++|++|++..
T Consensus 266 ~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 266 NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 99999999999999999999999996 5677888999999999999999999999999999999999754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=295.27 Aligned_cols=295 Identities=16% Similarity=0.275 Sum_probs=210.6
Q ss_pred CCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccc-----eeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
+....|++|++.|++|+|++++ ++|+|||.|++|++||+.+.. ....+.+|. ..+.++++++ ++++|+||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~--~g~~l~sg 448 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSS--DGQFALSG 448 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECT--TSSEEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC--CcEEEEEECC--CCCEEEEE
Confidence 3456799999999999999865 799999999999999986542 234555665 4578888887 67899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.|++||+||+.++... .....|...+ .+.. +.+++ .
T Consensus 449 s~Dg~v~vwd~~~~~~~-------~~~~~h~~~v-----------------~~~~------------------~s~~~-~ 485 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVST-------RRFVGHTKDV-----------------LSVA------------------FSLDN-R 485 (694)
T ss_dssp ETTSEEEEEETTTTEEE-------EEEECCSSCE-----------------EEEE------------------ECTTS-S
T ss_pred eCCCcEEEEECCCCcce-------eEEeCCCCCE-----------------EEEE------------------EeCCC-C
Confidence 99999999999876321 1100010000 0000 11111 2
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+++++.|++|++||+...... .+... ...+.....+ ..+.++.. ...+++|+.||+|++||++. .
T Consensus 486 -~l~s~s~D~~i~iwd~~~~~~~-~~~~~------~~~h~~~v~~---~~~~~~~~--~~~l~s~s~d~~v~vwd~~~-~ 551 (694)
T 3dm0_A 486 -QIVSASRDRTIKLWNTLGECKY-TISEG------GEGHRDWVSC---VRFSPNTL--QPTIVSASWDKTVKVWNLSN-C 551 (694)
T ss_dssp -CEEEEETTSCEEEECTTSCEEE-EECSS------TTSCSSCEEE---EEECSCSS--SCEEEEEETTSCEEEEETTT-C
T ss_pred -EEEEEeCCCEEEEEECCCCcce-eeccC------CCCCCCcEEE---EEEeCCCC--cceEEEEeCCCeEEEEECCC-C
Confidence 3567788999999998654332 22111 0011111122 23443321 23689999999999999986 4
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.....+.+|...|.+++|+|++..+++++.|++|++||+... .... .+. +...+.+++|+|++.++++++ |+.|
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~--~~~~--~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i 625 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--KKLY--SLE-ANSVIHALCFSPNRYWLCAAT-EHGI 625 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT--EEEE--CCB-CSSCEEEEEECSSSSEEEEEE-TTEE
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--ceEE--Eec-CCCcEEEEEEcCCCcEEEEEc-CCCE
Confidence 456778899999999999999999999999999999999653 3322 222 234699999999998877665 6779
Q ss_pred EEEEccCCeEEEEecccC-------------------CceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 323 RIYNYRKGSALAILKYHH-------------------ATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~-------------------~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++||+.+++.+..+..+. ..+.+++|+|||++|+|||.|++|++|++.
T Consensus 626 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999999998877665332 137899999999999999999999999985
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=261.76 Aligned_cols=298 Identities=18% Similarity=0.210 Sum_probs=215.1
Q ss_pred CCCCCCCeEEeec--CCC--ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee
Q 017296 4 RPPPPDPVAVLRG--HRA--SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 4 ~~~~~~~~~~l~g--H~~--~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
|.-|..|.++|.. ..+ ..++|+||+++ +|++| .|++|+|||+.+++.+..+..|.+...|.++++++ +++++
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l 82 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYL 82 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEE
Confidence 5566778888863 333 35789999875 66665 59999999999999887777665556688999987 67899
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
++|+.|++|++||+++++.. .....|.... .... .
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~-------~~~~~h~~~~-------------------~~~~-------------------~ 117 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRL-------RNMTSHSARV-------------------GSLS-------------------W 117 (318)
T ss_dssp EEEETTSEEEEEETTTTEEE-------EEEECCSSCE-------------------EEEE-------------------E
T ss_pred EEEECCCcEEEeecCCceeE-------EEecCccceE-------------------EEee-------------------c
Confidence 99999999999999887421 1111110000 0000 0
Q ss_pred CCceEEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
. ..++++++.++.+++|+..+... +..+..+. ....+ ..+.+ ....+++++.||+|++||+
T Consensus 118 ~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~----~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 118 N-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS----------QEVCG---LRWAP----DGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp E-TTEEEEEETTSEEEEEETTSSSCEEEEEECCS----------SCEEE---EEECT----TSSEEEEEETTSCEEEEES
T ss_pred C-CCEEEEEecCCceEeeecCCCceeEEEEcCcc----------CceEE---EEEcC----CCCEEEEEecCcceeEEEC
Confidence 0 12466788889999999887653 33333211 11111 11222 2236899999999999999
Q ss_pred cCCCC---ceeeeecCccCeEEEEEecCCCce---EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 239 RNPGI---PLTAMKVHLEPVLCLSIDESCNGG---ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 239 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~---~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
++... .......|..+|.++.+.+....+ ++++.+++|++||........ ...+...+..+.|+|+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSILWSPHYKE 254 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----EEECSSCEEEEEEETTTTE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----cccceeeeeeeeecccccc
Confidence 75432 234455678899999997765543 467789999999986543211 1224456889999999998
Q ss_pred EEEEe--CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 313 AATAG--WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 313 l~s~~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+++++ .|++|++||+.+++++.++.+|.+.|.+++|+|||++|||||.|++|+|||+++++
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 77654 79999999999999999999999999999999999999999999999999998765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=274.76 Aligned_cols=314 Identities=12% Similarity=0.173 Sum_probs=222.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc------eeeeeeeeeceeeeEEeccCCc--ccc---c
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPS--IGL---N 77 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~---~ 77 (374)
+...++++|.++|++|+|+| ++|++|+.|++|++||+.+++ .+..+..|. ..+.++++++. .++ +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK--SGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT--TCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCC--CcEEEEEEecccccCCcccc
Confidence 45678899999999999988 899999999999999998877 566666665 34788888762 116 7
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.|++++.|++|++||+.+++.... ..+.....+. .... .....+..+.. ..
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~-------~~~~-----~~~v~~~~~~~---------------~~ 133 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKK--VIFEKLDLLD-------SDMK-----KHSFWALKWGA---------------SN 133 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCC--EEEEEECCSC-------TTGG-----GSCEEEEEEEC---------------CC
T ss_pred EEEEEcCCCCEEEEEccCCccccc--ccceeecccc-------cccC-----CCcEEEEEEee---------------cc
Confidence 899999999999999987643110 0000000000 0000 00000000000 00
Q ss_pred CCCCceEEEcccCCCeEEEEecCC------CceeE-----EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNT------AERCT-----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (374)
.++..+++++++.|+.|++||+++ ++.+. .+...... .........++ .+.+ .+ .+++
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~---~~~~---~~--~l~~ 202 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES---PMTPSQFATSV---DISE---RG--LIAT 202 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC---SSSSCCCCCEE---EECT---TS--EEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeecc---ccCCCCCceEE---EECC---Cc--eEEE
Confidence 012234266777889999999988 55443 33210000 00011112222 2332 23 6899
Q ss_pred EecCCcEEEEeccCCCCceeeeec---C---ccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeec-
Q 017296 227 GYEDGSILVWDIRNPGIPLTAMKV---H---LEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINL- 296 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~- 296 (374)
++.||.|++||++. ..++..+.. | ..+|.++.|++++..+++++.| +.|++||++... .. ..+..
T Consensus 203 ~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~--~~~~~~ 277 (397)
T 1sq9_A 203 GFNNGTVQISELST-LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RI--GSLSVP 277 (397)
T ss_dssp ECTTSEEEEEETTT-TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EE--EEECBC
T ss_pred EeCCCcEEEEECCC-CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--cc--ceeccC
Confidence 99999999999986 456777788 8 9999999999999999999999 999999997543 22 23334
Q ss_pred ------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec------cc---------------CCce
Q 017296 297 ------------ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK------YH---------------HATC 343 (374)
Q Consensus 297 ------------~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------~h---------------~~~v 343 (374)
|...+.+++|+|++++|++++.||+|++||+.+++.+..+. +| ...|
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v 357 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 357 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred cccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCce
Confidence 66789999999999999999999999999999999999998 88 8999
Q ss_pred EEEEEeCCC----------CEEEEEeCCCcEEEecCCC
Q 017296 344 NAVSFSSDC----------KLMASASEDSTVALWELYP 371 (374)
Q Consensus 344 ~~v~~sp~~----------~~las~s~D~~v~~W~~~~ 371 (374)
.+++|+|++ ++|++++.|+.|++|++..
T Consensus 358 ~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 358 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred eEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 999999998 7999999999999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=258.42 Aligned_cols=294 Identities=16% Similarity=0.206 Sum_probs=218.0
Q ss_pred CCCCCC-CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 3 KRPPPP-DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 3 ~~~~~~-~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
+.|... ++..+|++|.++|++++| +++++|++|+.|+.|++||+.+++....+..|. ..+.++++++ +++.+++
T Consensus 2 ~d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~ 76 (313)
T 3odt_A 2 IDPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ--GFLNSVCYDS--EKELLLF 76 (313)
T ss_dssp ---CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS--SCEEEEEEET--TTTEEEE
T ss_pred CCccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC--ccEEEEEECC--CCCEEEE
Confidence 344444 688999999999999999 999999999999999999998887777766664 4588888887 6689999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
++.|+.+++|++....... +.............+ . + .+
T Consensus 77 ~~~dg~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~--------------------~------------------~---~~ 114 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGED-PLYTLIGHQGNVCSL--------------------S------------------F---QD 114 (313)
T ss_dssp EETTSCEEEEETTCCTTSC-C-CEECCCSSCEEEE--------------------E------------------E---ET
T ss_pred ecCCCeEEEEEeeecCCCC-cccchhhcccCEEEE--------------------E------------------e---cC
Confidence 9999999999997642110 000000000000000 0 0 11
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
. ++++++.|+.|++|| .++....+..+ .....++ .+.+. ....+++++.||.|++||..
T Consensus 115 ~-~l~~~~~d~~i~~~d--~~~~~~~~~~~----------~~~v~~~---~~~~~---~~~~l~~~~~d~~i~i~d~~-- 173 (313)
T 3odt_A 115 G-VVISGSWDKTAKVWK--EGSLVYNLQAH----------NASVWDA---KVVSF---SENKFLTASADKTIKLWQND-- 173 (313)
T ss_dssp T-EEEEEETTSEEEEEE--TTEEEEEEECC----------SSCEEEE---EEEET---TTTEEEEEETTSCEEEEETT--
T ss_pred C-EEEEEeCCCCEEEEc--CCcEEEecccC----------CCceeEE---EEccC---CCCEEEEEECCCCEEEEecC--
Confidence 2 456777889999999 44444444321 1111111 12221 12368999999999999953
Q ss_pred CCceeeeec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 242 GIPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 242 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
.....+.. |...+.++.+++++. +++++.|+.|++||++... . ...+..|...+.+++|+|++ .|++++.||
T Consensus 174 -~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~--~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg 246 (313)
T 3odt_A 174 -KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD--V--LRTYEGHESFVYCIKLLPNG-DIVSCGEDR 246 (313)
T ss_dssp -EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC--E--EEEEECCSSCEEEEEECTTS-CEEEEETTS
T ss_pred -ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh--h--hhhhhcCCceEEEEEEecCC-CEEEEecCC
Confidence 34555666 899999999999887 9999999999999997543 2 23445677889999999999 588999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|++||+.+++.+..+..|...|.+++|+|+++ +++++.|+.|++|++..+
T Consensus 247 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 247 TVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred EEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 999999999999999999999999999999998 567999999999998653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=265.89 Aligned_cols=317 Identities=17% Similarity=0.235 Sum_probs=218.3
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCE-EEEecC---CCcEEEEeCcccceeeeee-eeeceeeeEEeccCCcc-ccceee
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPI-LFAGTT---GGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSI-GLNKVI 80 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~-l~s~s~---D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~ 80 (374)
|......+++|...|++|+|+|++.. +++|+. |+.|++||+.+++...... .|. ..+.+++|++.. +++.++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~ 84 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA--KPIKCGTFGATSLQQRYLA 84 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES--SCEEEEECTTCCTTTCCEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc--CcEEEEEEcCCCCCCceEE
Confidence 33445667899999999999999965 557766 9999999998877543322 343 458888998741 157899
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+++.|++|++||+.+++. +...+..+......+... +. ..+.+ +
T Consensus 85 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~--------------------~~------------~~~s~-~ 128 (357)
T 3i2n_A 85 TGDFGGNLHIWNLEAPEM---PVYSVKGHKEIINAIDGI--------------------GG------------LGIGE-G 128 (357)
T ss_dssp EEETTSCEEEECTTSCSS---CSEEECCCSSCEEEEEEE--------------------SG------------GGCC--C
T ss_pred EecCCCeEEEEeCCCCCc---cEEEEEecccceEEEeec--------------------cc------------cccCC-C
Confidence 999999999999987641 111111110000000000 00 00111 1
Q ss_pred CceEEEcccCCCeEEEEecCCCc-eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
.. ++++++.|+.|++||+++++ ....+..... .....+..+ .+.+..+.....+++++.||.|++||++
T Consensus 129 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~v~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 129 AP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQG--------ENKRDCWTV-AFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp CC-EEEEEETTSCEEEECTTSCSSCSEEECCCTT--------SCCCCEEEE-EEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred cc-EEEEEeCCCeEEEEeCCCCCCcceeccccCC--------CCCCceEEE-EEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 22 45677789999999999886 4444432110 001111111 1111111233468899999999999998
Q ss_pred CCCCceeeeecCccCeEEEEEec---CCCceEEEecCCeEEEEEcCCCCCeEEE-EEeeecCCCCeEEEEECCCCC-EEE
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDE---SCNGGISGGADQKIVLYNLDHSTGSCVI-KKEINLERPGISGTSIRPDSK-IAA 314 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~s~s~D~~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~-~l~ 314 (374)
... ......|..+|.++.|+| ++..+++++.|+.|++||++.......+ ......|...+.+++|+|+++ +++
T Consensus 199 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 199 NMA--LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp TTE--EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred cCc--eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 643 334567899999999999 8889999999999999998653222111 113346778899999999998 899
Q ss_pred EEeCCCeEEEEEccCC-------------------eEEEEecccCCceEEEEEeCCCCEEE-EEeCCCcEEEecCCCCC
Q 017296 315 TAGWDRRVRIYNYRKG-------------------SALAILKYHHATCNAVSFSSDCKLMA-SASEDSTVALWELYPPH 373 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~-------------------~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~D~~v~~W~~~~~~ 373 (374)
+++.||.|++||+..+ +.+..+.+|...|.+++|+|++++|+ +++.|+.|++|++..++
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999999753 45778889999999999999999888 89999999999997654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=269.45 Aligned_cols=257 Identities=19% Similarity=0.217 Sum_probs=187.4
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
.++.+|++.|++++|+++|++|+||+.|++|+|||+.+++ .+..+.+|. ..|.+++|++..+++.|+|++.|++|+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHE--GPVWQVAWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCS--SCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCC--ccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence 3567999999999999999999999999999999998764 355666775 358888887643468999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||+++++.. .... . .+-
T Consensus 85 iWd~~~~~~~-----~~~~----------~-----------------------------------------------~~h 102 (316)
T 3bg1_A 85 IWREENGTWE-----KSHE----------H-----------------------------------------------AGH 102 (316)
T ss_dssp EECCSSSCCC-----EEEE----------E-----------------------------------------------CCC
T ss_pred EEECCCCcce-----EEEE----------c-----------------------------------------------cCC
Confidence 9999765210 0000 0 000
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--ceee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTA 247 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~~ 247 (374)
.+. ..++ .+.++. ....+++|+.||+|++||++.... ....
T Consensus 103 -~~~-------------------------------V~~v---~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 103 -DSS-------------------------------VNSV---CWAPHD--YGLILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp -SSC-------------------------------CCEE---EECCTT--TCSCEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred -CCc-------------------------------eEEE---EECCCC--CCcEEEEEcCCCCEEEEecCCCCCcceeee
Confidence 000 0000 122210 012488999999999999975422 1345
Q ss_pred eecCccCeEEEEEecC-----------------CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 248 MKVHLEPVLCLSIDES-----------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~-----------------~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
+.+|...+.++.|+|+ +..+++|+.|++|++||++.. ........+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-GQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-SCEEEEECCBCCSSCEEEEECCCCS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-CccceeeecccCCCceEEEEecCCC
Confidence 6789999999999876 357899999999999999633 2222334566788889999999986
Q ss_pred ----CEEEEEeCCCeEEEEEccCC---e-EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 311 ----KIAATAGWDRRVRIYNYRKG---S-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 311 ----~~l~s~~~dg~v~iwd~~~~---~-~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|++++.|++|++||+.+. + ....+..|...|.+++|+|++++||+++.|++|+||+..
T Consensus 225 ~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999999999999999763 1 233456789999999999999999999999999999975
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=269.63 Aligned_cols=301 Identities=15% Similarity=0.180 Sum_probs=212.5
Q ss_pred CCCCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
..++...+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++....+........+.+++|++. +++.+++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CCCEEEEEeCC
Confidence 345678899999999999999999 9999999999999999988776555442222345888888763 35789999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+.+... ..+.....+. ....+.. +.+ +.. ++
T Consensus 141 ~~i~iwd~~~~~~-----~~~~~~~~~~-----------------~~v~~~~------------------~~~-~~~-~l 178 (383)
T 3ei3_B 141 GATTLRDFSGSVI-----QVFAKTDSWD-----------------YWYCCVD------------------VSV-SRQ-ML 178 (383)
T ss_dssp TEEEEEETTSCEE-----EEEECCCCSS-----------------CCEEEEE------------------EET-TTT-EE
T ss_pred CEEEEEECCCCce-----EEEeccCCCC-----------------CCeEEEE------------------ECC-CCC-EE
Confidence 9999999975310 0000000000 0000000 111 122 45
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC---
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--- 242 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~--- 242 (374)
++++.|+.|++||+ +++.+..+..+. ....++ .+.++ +...+++|+.|+.|++||++...
T Consensus 179 ~~~~~d~~i~i~d~-~~~~~~~~~~h~----------~~v~~~---~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~ 241 (383)
T 3ei3_B 179 ATGDSTGRLLLLGL-DGHEIFKEKLHK----------AKVTHA---EFNPR---CDWLMATSSVDATVKLWDLRNIKDKN 241 (383)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECSS----------SCEEEE---EECSS---CTTEEEEEETTSEEEEEEGGGCCSTT
T ss_pred EEECCCCCEEEEEC-CCCEEEEeccCC----------CcEEEE---EECCC---CCCEEEEEeCCCEEEEEeCCCCCccc
Confidence 67778899999999 455555554321 111121 24332 22268999999999999998632
Q ss_pred CceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeee---cC----------CCCeEEEEECC
Q 017296 243 IPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LE----------RPGISGTSIRP 308 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~---~~----------~~~v~~~~~sp 308 (374)
..+..+ +|..+|.+++|++ ++..+++++.|+.|++||++.......+..... .+ ...+..++|+|
T Consensus 242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC
Confidence 233334 7999999999999 999999999999999999976543333221110 01 12344577788
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++++ +++.|++|++||+.+++.+..+.+ |...+..++|+|++++||+++ |+.|++|++..
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 8877 788999999999999999999987 457788889999999999998 99999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=277.56 Aligned_cols=301 Identities=14% Similarity=0.171 Sum_probs=202.7
Q ss_pred CCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCccccee--eeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTV--SSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
+......+|...|+||+|+| ++++|++|+.||+|+|||+.+++.. ..+.+|. ..|.+++|++. ++++|+|++.|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~--~~V~~l~f~p~-~~~~l~s~s~D 186 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPL-NTNQFYASSME 186 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSS--CCCCEEEECSS-CTTEEEEECSS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCC--CCEEEEEEeCC-CCCEEEEEeCC
Confidence 45567789999999999998 5679999999999999999876543 3334454 45888999864 45799999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++||+||++++... .......+ . ....+.. +.+ +.. ++
T Consensus 187 ~~v~iwd~~~~~~~-----~~~~~~~~-----------~------~~~~~~~------------------~~~-~~~-~l 224 (435)
T 4e54_B 187 GTTRLQDFKGNILR-----VFASSDTI-----------N------IWFCSLD------------------VSA-SSR-MV 224 (435)
T ss_dssp SCEEEEETTSCEEE-----EEECCSSC-----------S------CCCCCEE------------------EET-TTT-EE
T ss_pred CEEEEeeccCCcee-----EEeccCCC-----------C------ccEEEEE------------------ECC-CCC-EE
Confidence 99999999754210 00000000 0 0000000 111 122 46
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-- 243 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~-- 243 (374)
++|+.|+.|++||++.. .+..+..+ .....+ ..|.+. +...+++|+.|++|++||++....
T Consensus 225 ~~g~~dg~i~~wd~~~~-~~~~~~~h----------~~~v~~---v~~~p~---~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 225 VTGDNVGNVILLNMDGK-ELWNLRMH----------KKKVTH---VALNPC---CDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp EEECSSSBEEEEESSSC-BCCCSBCC----------SSCEEE---EEECTT---CSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred EEEeCCCcEeeeccCcc-eeEEEecc----------cceEEe---eeecCC---CceEEEEecCcceeeEEecccccccc
Confidence 67888999999998753 33333211 111111 134332 233588899999999999976432
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC--CCeEEEEECCCCCEEEEEe----
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER--PGISGTSIRPDSKIAATAG---- 317 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~---- 317 (374)
.+....+|..+|.+++|+|++..+++++.|++|++||+........+......+. .......|+|++.++++++
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 2333467999999999999999999999999999999975443322211111110 1123345666666665554
Q ss_pred --------CCCeEEEEEccCCeEEEEec-ccCCceEEE-EEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 318 --------WDRRVRIYNYRKGSALAILK-YHHATCNAV-SFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 318 --------~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v-~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+++|++||..+++.+..+. +|...|.++ +|+|+|++||+|+ |++|+||++.++
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 34689999999999888764 677888887 7999999999976 889999999765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=266.09 Aligned_cols=299 Identities=12% Similarity=0.172 Sum_probs=213.7
Q ss_pred EEeecCCCceeEEEEeCC----CCEEEEecCCCcEEEEeCcccceeeeeeeeec---eeeeEEeccCCccc--cceeeec
Q 017296 12 AVLRGHRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIG--LNKVISQ 82 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~----~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~l~s~ 82 (374)
..+++|.++|++|+|+|+ ...+++++.++.|++||..+++.+..+..|.. ...+.+++|++... ++.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 455699999999999984 45666666677999999998887766665542 24578888877422 5689999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.|++|++||+.+++... .+........ +.. +.+.++.
T Consensus 92 ~~dg~i~v~d~~~~~~~~----~~~~~~~~i~--------------------~~~------------------~~~~~~~ 129 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIK----HYVGHGNAIN--------------------ELK------------------FHPRDPN 129 (366)
T ss_dssp ETTCEEEEECTTTCCEEE----EEESCCSCEE--------------------EEE------------------ECSSCTT
T ss_pred cCCCEEEEEEchhceEee----eecCCCCcEE--------------------EEE------------------ECCCCCC
Confidence 999999999998764210 1100000000 000 1111223
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
++++++.|+.|++||+++++.+..+.... . ......++ .+.++ ...+++++.||.|++||++..
T Consensus 130 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~--~~~~v~~~---~~~~~----~~~l~~~~~dg~i~i~d~~~~- 193 (366)
T 3k26_A 130 -LLLSVSKDHALRLWNIQTDTLVAIFGGVE-----G--HRDEVLSA---DYDLL----GEKIMSCGMDHSLKLWRINSK- 193 (366)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECSTT-----S--CSSCEEEE---EECTT----SSEEEEEETTSCEEEEESCSH-
T ss_pred -EEEEEeCCCeEEEEEeecCeEEEEecccc-----c--ccCceeEE---EECCC----CCEEEEecCCCCEEEEECCCC-
Confidence 45677789999999999998777663100 0 11111221 23332 236899999999999999753
Q ss_pred Ccee----------------------------eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC--------
Q 017296 243 IPLT----------------------------AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG-------- 286 (374)
Q Consensus 243 ~~~~----------------------------~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~-------- 286 (374)
.... ...+|..+|.++.|+ +..+++++.|+.|++||+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 194 RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT
T ss_pred ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC
Confidence 1121 223389999999999 45789999999999999875432
Q ss_pred --eEEEEEeeecCCCCeEEEEECCC--CCEEEEEeCCCeEEEEEccCCe----EEEEeccc--CCceEEEEEeCCCCEEE
Q 017296 287 --SCVIKKEINLERPGISGTSIRPD--SKIAATAGWDRRVRIYNYRKGS----ALAILKYH--HATCNAVSFSSDCKLMA 356 (374)
Q Consensus 287 --~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~h--~~~v~~v~~sp~~~~la 356 (374)
.......+..|...+.+++|+|+ +++|++++.||.|++||+.+++ ....+.+| ...|.+++|+|++++|+
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 351 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI 351 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEE
Confidence 11233455667778999999999 9999999999999999998875 44577877 78999999999999999
Q ss_pred EEeCCCcEEEecCC
Q 017296 357 SASEDSTVALWELY 370 (374)
Q Consensus 357 s~s~D~~v~~W~~~ 370 (374)
+++.|+.|++||+.
T Consensus 352 s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 352 AVCDDASIWRWDRL 365 (366)
T ss_dssp EEETTSEEEEEEC-
T ss_pred EEeCCCEEEEEEec
Confidence 99999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=265.82 Aligned_cols=294 Identities=18% Similarity=0.269 Sum_probs=212.0
Q ss_pred CCCCeEEeecCC----CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 7 PPDPVAVLRGHR----ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 7 ~~~~~~~l~gH~----~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
|..|..+|.... -.++.|+|+++ ++|++|. |++|+|||..+|+.+..+..+.+...|.+++|++ ++++|++|
T Consensus 90 ~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasg 165 (420)
T 4gga_A 90 PSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVG 165 (420)
T ss_dssp CSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEE
T ss_pred CCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEE
Confidence 345666665432 23678999975 5777665 9999999999998877666555555689999988 67899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.|++|++||+.+++.. .....|...+ .... .+ .
T Consensus 166 s~Dg~v~iWd~~~~~~~-------~~~~~h~~~v-------------------~~~s-------------------~~-~ 199 (420)
T 4gga_A 166 TSSAEVQLWDVQQQKRL-------RNMTSHSARV-------------------GSLS-------------------WN-S 199 (420)
T ss_dssp ETTSCEEEEETTTTEEE-------EEECCCSSCE-------------------EEEE-------------------EE-T
T ss_pred ECCCeEEEEEcCCCcEE-------EEEeCCCCce-------------------EEEe-------------------eC-C
Confidence 99999999999886421 1111110000 0000 01 1
Q ss_pred eEEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
.++++|+.|+.+++||...... +..+..+. ...+. ..+.+ ....+++++.||.|++||+...
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~-----------~~~~~--~~~~~----~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHS-----------QEVCG--LRWAP----DGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCS-----------SCEEE--EEECT----TSSEEEEEETTSCEEEEESSCC
T ss_pred CEEEEEeCCCceeEeeecccceeeEEecccc-----------cceee--eeecC----CCCeeeeeeccccceEEeeccc
Confidence 2567888899999999987653 33333211 11111 12222 2236899999999999999754
Q ss_pred C---CceeeeecCccCeEEEEEecCCCce-E--EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 242 G---IPLTAMKVHLEPVLCLSIDESCNGG-I--SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 242 ~---~~~~~~~~h~~~v~~~~~~~~~~~~-~--s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
. ..+.....|...|.++.+.+....+ + +|+.|++|++||+... .+.. .+.. ...+.++.|+|+++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~--~~~~--~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG--ACLS--AVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT--EEEE--EEEC-SSCEEEEEEETTTTEEEE
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc--ccce--eecc-ccceeeeeecCCCCeEEE
Confidence 3 2345567799999999998865544 3 3567999999999754 3322 2232 346889999999998887
Q ss_pred Ee--CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 316 AG--WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 316 ~~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++ .|++|+|||+.+++++.++.+|.+.|.+++|+|||++|||||.|++||||++++.
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 65 7999999999999999999999999999999999999999999999999999764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=255.75 Aligned_cols=252 Identities=19% Similarity=0.273 Sum_probs=188.7
Q ss_pred eeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCC
Q 017296 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (374)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (374)
..++.+|. ..|.+++|++ +++++++++.|++|++||+.++.... .+.........+
T Consensus 6 ~~~~~~h~--~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~~~~~~----~~~~~~~~v~~~---------------- 61 (304)
T 2ynn_A 6 KKTFSNRS--DRVKGIDFHP--TEPWVLTTLYSGRVELWNYETQVEVR----SIQVTETPVRAG---------------- 61 (304)
T ss_dssp EEEEEEEC--SCEEEEEECS--SSSEEEEEETTSEEEEEETTTTEEEE----EEECCSSCEEEE----------------
T ss_pred EEeecCCC--CceEEEEECC--CCCEEEEEcCCCcEEEEECCCCceeE----EeeccCCcEEEE----------------
Confidence 34556665 3588999988 67899999999999999998763210 000000000000
Q ss_pred CcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
. +.+ +++ ++++|+.|++|++||+++++.+..+..+. ....++ .
T Consensus 62 ----~------------------~~~-~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~h~----------~~v~~~---~ 104 (304)
T 2ynn_A 62 ----K------------------FIA-RKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAHP----------DYIRSI---A 104 (304)
T ss_dssp ----E------------------EEG-GGT-EEEEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEE---E
T ss_pred ----E------------------EeC-CCC-EEEEECCCCEEEEEECCCCcEEEEEeCCC----------CcEEEE---E
Confidence 0 001 112 45677889999999999999877775431 111121 2
Q ss_pred eecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEE
Q 017296 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~ 291 (374)
+.++ ...+++|+.||+|++||++........+.+|...|.+++|+| ++..+++|+.|++|++||+........+
T Consensus 105 ~~~~----~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~- 179 (304)
T 2ynn_A 105 VHPT----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL- 179 (304)
T ss_dssp ECSS----SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE-
T ss_pred EcCC----CCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee-
Confidence 4332 236899999999999999865455667889999999999998 5677999999999999999755433222
Q ss_pred EeeecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 292 KEINLERPGISGTSIRP--DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...+...+..+.|+| ++++|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|||++.|++|++||+
T Consensus 180 --~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 180 --TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp --ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred --ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 123446788888886 7889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 017296 370 YPP 372 (374)
Q Consensus 370 ~~~ 372 (374)
...
T Consensus 258 ~~~ 260 (304)
T 2ynn_A 258 STY 260 (304)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=275.77 Aligned_cols=310 Identities=17% Similarity=0.263 Sum_probs=213.0
Q ss_pred CCCeEEe-ecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcc---cceee-eee-eeeceeeeEEeccCCccccceee
Q 017296 8 PDPVAVL-RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ---HRTVS-SSW-VHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 8 ~~~~~~l-~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.+++..+ ++|.+.|++|+|+| ++.+|+||+.|++|+|||+.+ +.... ... .|. ..+.++++++ +++.|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~ 127 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCS--STVTQITMIP--NFDAFA 127 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECS--SCEEEEEECT--TSSEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCC--CCEEEEEEeC--CCCEEE
Confidence 4677888 99999999999999 999999999999999999876 43221 111 233 4588899987 568999
Q ss_pred eccccCeEEEEecC---CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIE---NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 81 s~~~D~~vrvwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
+++.|++|++||+. +++. ......+ +...+...+.. . ... ..... ...
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~-~i~~~~~~~~~----~--~~~--------~~~~~-------~~~ 178 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESE-------VKFLNCE-CIRKINLKNFG----K--NEY--------AVRMR-------AFV 178 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTE-------EEEEEEE-EEEEEEGGGGS----S--CCC--------EEEEE-------EEE
T ss_pred EEeCCCEEEEEEeccccCCce-------eeccccc-eeEEEEccCcc----c--ccC--------ceEEE-------EEE
Confidence 99999999999995 3321 1111111 00000000000 0 000 00000 000
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
.++ ..++++++.|++|++||+++++.+..+.... ......++ .+.++ ...+++|+.||.|++||
T Consensus 179 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------h~~~v~~~---~~s~~----~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 179 NEE-KSLLVALTNLSRVIIFDIRTLERLQIIENSP--------RHGAVSSI---CIDEE----CCVLILGTTRGIIDIWD 242 (437)
T ss_dssp CSS-CEEEEEEETTSEEEEEETTTCCEEEEEECCG--------GGCCEEEE---EECTT----SCEEEEEETTSCEEEEE
T ss_pred cCC-CCEEEEEeCCCeEEEEeCCCCeeeEEEccCC--------CCCceEEE---EECCC----CCEEEEEcCCCeEEEEE
Confidence 111 2356677889999999999998877775310 01111222 23332 23689999999999999
Q ss_pred ccCCCCceeeee-cCccCeEEEEEe----cCCCceEEEecCCeEEEEEcCCCCCeEEEEEe-------------------
Q 017296 238 IRNPGIPLTAMK-VHLEPVLCLSID----ESCNGGISGGADQKIVLYNLDHSTGSCVIKKE------------------- 293 (374)
Q Consensus 238 l~~~~~~~~~~~-~h~~~v~~~~~~----~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~------------------- 293 (374)
++. ..++..+. .|..+|.++.+. +++..+++++.|++|++||++.......+...
T Consensus 243 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 243 IRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp TTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred cCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 986 45566665 788899999665 45668899999999999999754322221100
Q ss_pred -ee--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc--------------------------------
Q 017296 294 -IN--LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY-------------------------------- 338 (374)
Q Consensus 294 -~~--~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------------------------------- 338 (374)
+. .|...|.+++|+ ++++|++|+.|++|++||+.+++.+..+.+
T Consensus 322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (437)
T 3gre_A 322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSV 400 (437)
T ss_dssp CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------
T ss_pred eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccccc
Confidence 00 144458889999 778999999999999999998877666655
Q ss_pred -----cCCceEEEEEeCC--CCEEEEEeCCCcEEEec
Q 017296 339 -----HHATCNAVSFSSD--CKLMASASEDSTVALWE 368 (374)
Q Consensus 339 -----h~~~v~~v~~sp~--~~~las~s~D~~v~~W~ 368 (374)
|...|.+++|+++ +.+|+||+.||+|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=273.18 Aligned_cols=304 Identities=17% Similarity=0.226 Sum_probs=218.2
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc----cceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
+|...|++++|+|++.+|++|+.|+.|++||+.+ .+.+..+..|. ..+.++++++. +++.+++++.|++|++|
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~-~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHS--SSVKTVKFNAK-QDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSS--SCCCEEEECSS-STTBEEEECSSSCEEBC
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCc--cceEEEEEcCC-CCCEEEEEcCCCeEEEE
Confidence 6999999999999999999999999999999987 33566666665 35788888873 25789999999999999
Q ss_pred ecCCCCCCCC--CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 92 DIENGGLSSN--PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 92 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
|+.+++.... ..........| .....+. .+.+.+. .++++++
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~------------------~~~~~~~-~~l~~~~ 185 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSS-----------------VDEVISL------------------AWNQSLA-HVFASAG 185 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCS-----------------SCCCCEE------------------EECSSCT-TEEEEES
T ss_pred ECCCCccccccccccccccccCC-----------------CCCeeEE------------------EeCCCCC-cEEEEEc
Confidence 9987641100 00000000000 0000000 0112222 3466777
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC---cEEEEeccCCCCcee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG---SILVWDIRNPGIPLT 246 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg---~i~iwdl~~~~~~~~ 246 (374)
.|+.|++||+++++.+..+...... .. ......+ ..+.++ +...+++++.|+ .|++||++....+..
T Consensus 186 ~dg~v~iwd~~~~~~~~~~~~~~~~--~~--~~~~v~~---~~~~~~---~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 186 SSNFASIWDLKAKKEVIHLSYTSPN--SG--IKQQLSV---VEWHPK---NSTRVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCCS--SC--CCCCEEE---EEECSS---CTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred CCCCEEEEECCCCCcceEEeccccc--cc--cCCceEE---EEECCC---CCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 8999999999998877666432100 00 0111111 234332 223688999998 999999987556677
Q ss_pred eee-cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEEEeCCCeEE
Q 017296 247 AMK-VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDRRVR 323 (374)
Q Consensus 247 ~~~-~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~v~ 323 (374)
.+. +|..+|.+++|+| ++..+++++.|++|++||++... . ...+..|...+.+++|+|++ ++|++++.|++|+
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~--~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE--Q--LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC--E--EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc--c--ceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 787 8999999999998 88899999999999999987543 2 23455677789999999998 8999999999999
Q ss_pred EEEccCCeEEEEe-----------------------------------cccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 324 IYNYRKGSALAIL-----------------------------------KYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 324 iwd~~~~~~~~~~-----------------------------------~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+||+.+++..... ..|...+.+++|+|||++||+++.|++|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 9999876432211 11667788999999999999999999999999
Q ss_pred CCCC
Q 017296 369 LYPP 372 (374)
Q Consensus 369 ~~~~ 372 (374)
+...
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 9754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=252.95 Aligned_cols=288 Identities=14% Similarity=0.212 Sum_probs=212.4
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceee---eeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....+|..+|++++|+|++++|++++ |+.|++||+.+++... .+..+.....+.++++++ +++.+++++.|++|
T Consensus 45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTL 121 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEE
T ss_pred ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcE
Confidence 34458999999999999999999999 9999999998765332 222112234588888887 56889999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++... ............ +.. +.+ +.. +++++
T Consensus 122 ~~~d~~~~~~~~--~~~~~~~~~~i~--------------------~~~------------------~~~-~~~-~l~~~ 159 (337)
T 1gxr_A 122 SIWDLAAPTPRI--KAELTSSAPACY--------------------ALA------------------ISP-DSK-VCFSC 159 (337)
T ss_dssp EEEECCCC--EE--EEEEECSSSCEE--------------------EEE------------------ECT-TSS-EEEEE
T ss_pred EEEECCCCCcce--eeecccCCCceE--------------------EEE------------------ECC-CCC-EEEEE
Confidence 999998763100 000000000000 000 011 122 34566
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.|++||+++++.+..+..+. ....++ .+.++ ...+++++.||.|++||++.. .....+
T Consensus 160 ~~dg~v~~~d~~~~~~~~~~~~~~----------~~i~~~---~~~~~----~~~l~~~~~dg~i~~~d~~~~-~~~~~~ 221 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQTLVRQFQGHT----------DGASCI---DISND----GTKLWTGGLDNTVRSWDLREG-RQLQQH 221 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EECTT----SSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred eCCCcEEEEeCCCCceeeeeeccc----------CceEEE---EECCC----CCEEEEEecCCcEEEEECCCC-ceEeee
Confidence 778999999999988776664321 111111 23332 236889999999999999863 333333
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.|..++.++.+++++..+++++.|+.|++||++... . .....|...+.+++|+|++++|++++.||.|++||+.
T Consensus 222 -~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--K---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--E---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--e---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 478899999999999999999999999999997543 1 2344566789999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+++.+... .|...|.+++|+|++++|++++.|+.|++|++
T Consensus 296 ~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 98887554 58899999999999999999999999999997
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=260.94 Aligned_cols=297 Identities=16% Similarity=0.248 Sum_probs=215.4
Q ss_pred CCCCCeEEeecCCCceeEEEEeCC---CCEEEEecCCCcEEEEeCcc-ccee-eeeeeeeceeeeEEeccCCccccceee
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQ-HRTV-SSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~---~~~l~s~s~D~~v~vWd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.+.+++..+.+|.+.|++|+|+|+ |++|++|+.|+.|++||+.+ ++.+ ..+..|. ..+.++++++ +++.|+
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~ 102 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHT--GPVLDVCWSD--DGSKVF 102 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECS--SCEEEEEECT--TSSEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecccc--CCEEEEEECc--CCCEEE
Confidence 456788999999999999999999 69999999999999999987 5544 4555554 4588888987 668999
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+++.|++|++||+.+++.. ...........+ .+. ..++
T Consensus 103 s~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~--------------------~~~-----------------~~~~ 140 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAI-----QIAQHDAPVKTI--------------------HWI-----------------KAPN 140 (368)
T ss_dssp EEETTSEEEEEETTTTEEE-----EEEECSSCEEEE--------------------EEE-----------------ECSS
T ss_pred EEcCCCcEEEEEcCCCCce-----eeccccCceEEE--------------------EEE-----------------eCCC
Confidence 9999999999999876321 110000000000 000 0011
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
..++++++.|+.|++||+++++.+..+..+. ...++. +.. ..+++++.++.+++||++.
T Consensus 141 -~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~---~~~------~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 141 -YSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-----------RCYCAD---VIY------PMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp -CEEEEEEETTSEEEEECSSCSSCSEEEECSS-----------CEEEEE---EET------TEEEEEEGGGCEEEEECSS
T ss_pred -CCEEEEccCCCcEEEEECCCCcEEEEEecCC-----------CceEEE---ecC------CeeEEEeCCCcEEEEEecc
Confidence 2346677789999999999988766664321 111111 111 1478899999999999976
Q ss_pred CCCceeeee-cCccCeEEEEEecCCCc----eEEEecCCeEEEEEcCCCCC-eEEEEEeeecCCC------------CeE
Q 017296 241 PGIPLTAMK-VHLEPVLCLSIDESCNG----GISGGADQKIVLYNLDHSTG-SCVIKKEINLERP------------GIS 302 (374)
Q Consensus 241 ~~~~~~~~~-~h~~~v~~~~~~~~~~~----~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~------------~v~ 302 (374)
......... .+...+.++.+.+.... +++++.|+.|++||++.... ... ..+..|.. .+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 200 QPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN--FTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp SCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS--EEEECSEEC----CCCEEECCEE
T ss_pred ccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc--eeeeeeecccccccccccccceE
Confidence 443333222 23456666666544443 89999999999999976432 111 11222222 699
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|+|++||++|.|+..+.|++..
T Consensus 278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998877777643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=262.90 Aligned_cols=297 Identities=16% Similarity=0.189 Sum_probs=216.6
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
+|.+.|++++|+|++++|++|+.|+.|++|| .+++.+..+..|. ..+.++++++ +++.+++++.|++|++||+.+
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNK--DGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC--SCEEEEEECT--TSSEEEEEETTCCEEEEETTT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC--ccEEEEEECC--CCCEEEEEecCCeEEEEECCC
Confidence 3899999999999999999999999999999 5677777776665 3588888887 567899999999999999987
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 175 (374)
++... .+.........+ ........ +..+ ....+.+ + . .+++++.++.|+
T Consensus 181 ~~~~~----~~~~~~~~~~~~--------~~~~~~~~--------~~~~-------~~~~~~~-~-~-~~~~~~~~g~i~ 230 (425)
T 1r5m_A 181 GTVMQ----HFELKETGGSSI--------NAENHSGD--------GSLG-------VDVEWVD-D-D-KFVIPGPKGAIF 230 (425)
T ss_dssp TEEEE----EECCC-------------------------------CCCB-------SCCEEEE-T-T-EEEEECGGGCEE
T ss_pred CcEEE----EeeccccCccce--------eeccccCC--------ccee-------eEEEEcC-C-C-EEEEEcCCCeEE
Confidence 63210 000000000000 00000000 0000 0000001 1 2 245667789999
Q ss_pred EEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCe
Q 017296 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (374)
Q Consensus 176 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v 255 (374)
+||+++++.+..+..+ .....++ .+.++ + ..+++++.||.|++||++. ......+..|..+|
T Consensus 231 ~~d~~~~~~~~~~~~~----------~~~i~~~---~~~~~---~-~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i 292 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGH----------HGPISVL---EFNDT---N-KLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSI 292 (425)
T ss_dssp EEETTCSSCSEEECCC----------SSCEEEE---EEETT---T-TEEEEEETTSCEEEECSSS-BSCSEEECCCSSCE
T ss_pred EEEcCCCceeeeeccC----------CCceEEE---EECCC---C-CEEEEEcCCCEEEEEECCC-CccceEecCCCccE
Confidence 9999998766655422 1111111 23332 2 2689999999999999986 44566778899999
Q ss_pred EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe----
Q 017296 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS---- 331 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~---- 331 (374)
.++.+++++ .+++++.|+.|++||++.. .. ...+..+...+.+++|+|++++|++++.||.|++||+.+++
T Consensus 293 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSMDGSVRLWSLKQN--TL--LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp EEEEEETTT-EEEEEETTSEEEEEETTTT--EE--EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred EEEEECCCC-EEEEEeCCCcEEEEECCCC--cE--eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence 999999988 8999999999999999653 22 23345567789999999999999999999999999999888
Q ss_pred ----------------EEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 332 ----------------ALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 332 ----------------~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..+.+|.. .|.+++|+|++++|++++.|+.|++|++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8889999976 99999999999999999999999999974
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=260.70 Aligned_cols=304 Identities=17% Similarity=0.220 Sum_probs=214.5
Q ss_pred CCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccceeeeee-------------eeeceeeeEEeccCCc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSW-------------VHSAAHGIVSVATGPS 73 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 73 (374)
.+....+++|.++|++|+|+| ++++|++|+.|+.|++||+.+++....+. +|. ..+.++++++.
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~ 110 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR--YSVETVQWYPH 110 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS--SCEEEEEECTT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC--CcEEEEEEccC
Confidence 457788999999999999999 99999999999999999998876544432 233 45888888773
Q ss_pred cccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC
Q 017296 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (374)
Q Consensus 74 ~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (374)
+++.+++++.|++|++||+.+++... ... .......+ ..
T Consensus 111 -~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~-~~~~~~~~--------------------~~--------------- 149 (408)
T 4a11_B 111 -DTGMFTSSSFDKTLKVWDTNTLQTAD----VFN-FEETVYSH--------------------HM--------------- 149 (408)
T ss_dssp -CTTCEEEEETTSEEEEEETTTTEEEE----EEE-CSSCEEEE--------------------EE---------------
T ss_pred -CCcEEEEEeCCCeEEEeeCCCCccce----ecc-CCCceeee--------------------Ee---------------
Confidence 44689999999999999998763210 000 00000000 00
Q ss_pred CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcE
Q 017296 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (374)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i 233 (374)
........+++++..++.|++||+++++.+..+..+. ....++ .+.++ +...+++|+.||.|
T Consensus 150 --~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----------~~v~~~---~~~~~---~~~ll~~~~~dg~i 211 (408)
T 4a11_B 150 --SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR----------QEILAV---SWSPR---YDYILATASADSRV 211 (408)
T ss_dssp --CSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC----------SCEEEE---EECSS---CTTEEEEEETTSCE
T ss_pred --ecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC----------CcEEEE---EECCC---CCcEEEEEcCCCcE
Confidence 0000112356677788999999999988766664321 111121 23332 22248899999999
Q ss_pred EEEeccCCCCceeee---------------ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee-ecC
Q 017296 234 LVWDIRNPGIPLTAM---------------KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLE 297 (374)
Q Consensus 234 ~iwdl~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~ 297 (374)
++||++....++..+ ..|..+|.+++|++++..+++++.|+.|++||++............ ...
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 291 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS 291 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc
Confidence 999998654333333 5788999999999999999999999999999997543221111100 001
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
...+........+..++.++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 292 KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 111222222334455667788999999999999999999999999999999999999999999999999998654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=260.98 Aligned_cols=291 Identities=13% Similarity=0.185 Sum_probs=211.4
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
.+..|.++|++++|+|++++|++|+.|+.|++||..+++ .+..+..|. ..+.++++++ +++.+++++.|++|++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAP--DSNRIVTCGTDRNAYV 78 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCS--SCEEEEEEET--TTTEEEEEETTSCEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeC--CCCEEEEEcCCCeEEE
Confidence 466799999999999999999999999999999998876 666776665 3578888887 5689999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
||+.+++... .. ....+. ....+.. +.+ +.. ++++++.
T Consensus 79 wd~~~~~~~~----~~-~~~~~~-----------------~~v~~~~------------------~~~-~~~-~l~~~~~ 116 (372)
T 1k8k_C 79 WTLKGRTWKP----TL-VILRIN-----------------RAARCVR------------------WAP-NEK-KFAVGSG 116 (372)
T ss_dssp EEEETTEEEE----EE-ECCCCS-----------------SCEEEEE------------------ECT-TSS-EEEEEET
T ss_pred EECCCCeeee----eE-EeecCC-----------------CceeEEE------------------ECC-CCC-EEEEEeC
Confidence 9997753100 00 000000 0000000 111 123 3556667
Q ss_pred CCeEEEEecCCCce---eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-------
Q 017296 171 LSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN------- 240 (374)
Q Consensus 171 d~~i~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~------- 240 (374)
|+.|++||+++++. ...+... + .....++ .+.++ ...+++++.||.|++||++.
T Consensus 117 d~~v~i~d~~~~~~~~~~~~~~~~-------~--~~~i~~~---~~~~~----~~~l~~~~~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 117 SRVISICYFEQENDWWVCKHIKKP-------I--RSTVLSL---DWHPN----SVLLAAGSCDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp TSSEEEEEEETTTTEEEEEEECTT-------C--CSCEEEE---EECTT----SSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred CCEEEEEEecCCCcceeeeeeecc-------c--CCCeeEE---EEcCC----CCEEEEEcCCCCEEEEEcccccccccc
Confidence 89999999988763 2222110 1 1111121 23332 23689999999999999641
Q ss_pred ----------CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 241 ----------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 241 ----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
....+..+..|..+|.++.|++++..+++++.|+.|++||++... . ...+..+...+.+++|+|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~--~~~~~~~~~~v~~~~~~~~~ 256 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--A--VATLASETLPLLAVTFITES 256 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--E--EEEEECSSCCEEEEEEEETT
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--e--eEEEccCCCCeEEEEEecCC
Confidence 234566777899999999999999999999999999999997543 2 23345566789999999999
Q ss_pred CEEEEEeCCCeEEEEEccC--CeE--------------------------------E------EEe-cccCCceEEEEEe
Q 017296 311 KIAATAGWDRRVRIYNYRK--GSA--------------------------------L------AIL-KYHHATCNAVSFS 349 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~~--~~~--------------------------------~------~~~-~~h~~~v~~v~~s 349 (374)
++++++ .|+.|++|++.+ ++. . ..+ .+|...|.+++|.
T Consensus 257 ~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 335 (372)
T 1k8k_C 257 SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 335 (372)
T ss_dssp EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEE
T ss_pred CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEe
Confidence 988877 899999999987 421 0 223 4899999999976
Q ss_pred -CCC---CEEEEEeCCCcEEEecCC
Q 017296 350 -SDC---KLMASASEDSTVALWELY 370 (374)
Q Consensus 350 -p~~---~~las~s~D~~v~~W~~~ 370 (374)
++| ++|+|++.|++|++|++.
T Consensus 336 ~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 336 SGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cCCCcceeeEEEecCCCceEEEEec
Confidence 676 999999999999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=264.20 Aligned_cols=305 Identities=17% Similarity=0.243 Sum_probs=215.2
Q ss_pred CCCCCeEEeecCCCce-eEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 6 PPPDPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V-~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
....+..++++|...| .++.| ++++|+||+.|++|++||+.+++.+..+.+|.. .+.++.+++ + ..+++|+.
T Consensus 109 ~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~--~V~~l~~~~--~-~~l~s~s~ 181 (464)
T 3v7d_B 109 KFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAH--G-GILVSGST 181 (464)
T ss_dssp TCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECS--T-TEEEEEET
T ss_pred CcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCc--CEEEEEEcC--C-CEEEEEeC
Confidence 3445678999999986 66666 567999999999999999999998888877764 578888876 3 38999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|++|++||+++++... ....+..... +..+ .+.....+
T Consensus 182 dg~i~vwd~~~~~~~~----~~~~h~~~v~--------------------~l~~------------------~~~~~~~~ 219 (464)
T 3v7d_B 182 DRTVRVWDIKKGCCTH----VFEGHNSTVR--------------------CLDI------------------VEYKNIKY 219 (464)
T ss_dssp TSCEEEEETTTTEEEE----EECCCSSCEE--------------------EEEE------------------EESSSCEE
T ss_pred CCCEEEEECCCCcEEE----EECCCCCccE--------------------EEEE------------------ecCCCCCE
Confidence 9999999998763210 0000000000 0000 00011235
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcce--------eEEEeeecCCCCCceEEEEEecCCcEEEE
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMC--------MAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~gs~dg~i~iw 236 (374)
+++++.|++|++||+++++.................+.....+ ..+..+.+ ....+++|+.||.|++|
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVW 295 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEE
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEE
Confidence 6778889999999999876432211100000000000000000 00011111 12368999999999999
Q ss_pred eccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE
Q 017296 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 237 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 316 (374)
|+++ ...+..+.+|..+|.++.+++++..+++++.|++|++||++.. .. ...+..|...+.+++|+ +++|+++
T Consensus 296 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~--~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 296 DVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--EL--MYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp ETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--EE--EEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred ECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cE--EEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 9986 4567778899999999999999999999999999999999653 32 23455677889999998 4799999
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.||+|++||+.+++...... |...+..++|+|++++|++++ |+.|++|++..+
T Consensus 369 s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 369 AADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 999999999999887765553 677888899999999999999 999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=263.07 Aligned_cols=255 Identities=21% Similarity=0.331 Sum_probs=192.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.++..++.+|.+.|++|+|+|++++|+||+.|++|++||+.+++++..+.+|. ..+.++++++ +++.+++|+.|++
T Consensus 140 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~--~~V~~v~~~p--~~~~l~s~s~D~~ 215 (410)
T 1vyh_C 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD--HNVSSVSIMP--NGDHIVSASRDKT 215 (410)
T ss_dssp CCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS--SCEEEEEECS--SSSEEEEEETTSE
T ss_pred CcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC--CCEEEEEEeC--CCCEEEEEeCCCe
Confidence 35678999999999999999999999999999999999999888888887775 4588888887 5679999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||++++.+. .....|...+. . + .+ .+++ .++++
T Consensus 216 i~~wd~~~~~~~-------~~~~~h~~~v~-------------------~------~----------~~-~~~g-~~l~s 251 (410)
T 1vyh_C 216 IKMWEVQTGYCV-------KTFTGHREWVR-------------------M------V----------RP-NQDG-TLIAS 251 (410)
T ss_dssp EEEEETTTCCEE-------EEEECCSSCEE-------------------E------E----------EE-CTTS-SEEEE
T ss_pred EEEEECCCCcEE-------EEEeCCCccEE-------------------E------E----------EE-CCCC-CEEEE
Confidence 999999887421 11000000000 0 0 00 0112 24667
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCC----------------CCceEEEEEecCC
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS----------------QGFVNVLAGYEDG 231 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~gs~dg 231 (374)
++.|++|++||++++++...+..+.. ...++ .+.+... .....+++|+.||
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~h~~----------~v~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELREHRH----------VVECI---SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSS----------CEEEE---EECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EcCCCeEEEEECCCCceeeEecCCCc----------eEEEE---EEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 78899999999999987776654311 11111 1222110 0123689999999
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
+|++||+++ +..+..+.+|...|.++.|++++..+++++.|++|++||+...... ..+..|...|.+++|+|+++
T Consensus 319 ~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~ 393 (410)
T 1vyh_C 319 TIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM----KTLNAHEHFVTSLDFHKTAP 393 (410)
T ss_dssp EEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----EEEECCSSCEEEEEECSSSS
T ss_pred eEEEEECCC-CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE----EEEcCCCCcEEEEEEcCCCC
Confidence 999999986 4567788999999999999999999999999999999999654322 33456778899999999999
Q ss_pred EEEEEeCCCeEEEEEcc
Q 017296 312 IAATAGWDRRVRIYNYR 328 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~ 328 (374)
+|++|+.||+|++|+++
T Consensus 394 ~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEETTSEEEEEC--
T ss_pred EEEEEeCCCcEEEEeCC
Confidence 99999999999999863
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=256.55 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=199.0
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCc--ccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+++.++++|.++|++++|+|++++|++|+.|+.|+|||+. +++.+..+.+|. ..+.++++++..+++.|++++.|+
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETTS
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCC--CcEEEEEeCCCCCCCEEEEeccCC
Confidence 4678899999999999999999999999999999999997 555666666665 358888888754578999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+|++||+.+++.. .+.. .
T Consensus 80 ~v~iwd~~~~~~~-----~~~~----------~----------------------------------------------- 97 (379)
T 3jrp_A 80 KVLIWKEENGRWS-----QIAV----------H----------------------------------------------- 97 (379)
T ss_dssp CEEEEEEETTEEE-----EEEE----------E-----------------------------------------------
T ss_pred EEEEEEcCCCcee-----Eeee----------e-----------------------------------------------
Confidence 9999999865210 0000 0
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC-Cce
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~-~~~ 245 (374)
.+ ....| .+ ..+.++. ....+++++.||.|++||++... ...
T Consensus 98 ~~-~~~~v-------------------------------~~---~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 98 AV-HSASV-------------------------------NS---VQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp CC-CSSCE-------------------------------EE---EEECCGG--GCSEEEEEETTSEEEEEECCTTSCCCE
T ss_pred cC-CCcce-------------------------------EE---EEeCCCC--CCCEEEEecCCCcEEEEecCCCCceee
Confidence 00 00000 00 0111110 01258889999999999997642 234
Q ss_pred eeeecCccCeEEEEEec-------------CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC---
Q 017296 246 TAMKVHLEPVLCLSIDE-------------SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD--- 309 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~-------------~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 309 (374)
..+..|..+|.++.|+| ++..+++++.|+.|++||++...........+..|...+.+++|+|+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 45678999999999998 58889999999999999998665554555566778888999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCe---EEEE--ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGS---ALAI--LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~---~~~~--~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+++|++++.||+|++||+.+++ .... ...|...|.+++|+|+|++|++++.|+.|++|++.
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 8999999999999999998763 2222 23488899999999999999999999999999985
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=256.35 Aligned_cols=319 Identities=13% Similarity=0.103 Sum_probs=195.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc----eeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
.....++||++.|++|+|+|++++|++|+.|++|++||+.++. .+..+.+|. ..+.+++|++..+++.|++++.
T Consensus 2 ~~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHD--SSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CCCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCS--SCEEEEEECCGGGCSEEEEEET
T ss_pred CccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCC--CcEEEEEEcCCCCCCEEEEEcC
Confidence 3456789999999999999999999999999999999998663 344455554 4588889987544689999999
Q ss_pred cCeEEEEecCCCCCCCCCc--eeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 85 DGTVKCWDIENGGLSSNPS--LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
|++|++||+.++....... ..+.....|. ....+.. +.+....
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-----------------~~v~~~~------------------~~~~~~~ 124 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSK-----------------GSLYSVK------------------FAPAHLG 124 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCS-----------------SCEEEEE------------------ECCGGGC
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccC-----------------CceeEEE------------------EcCCCCC
Confidence 9999999998764211000 0000000000 0000000 1111102
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCc---CCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF---SSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
.++++++.|+.|++||+++++.+..+........... .......++ .+.+... ....+++++.|+.+.+|+..
T Consensus 125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~-~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCL---SWCPSRF-SPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEE---EECCCSS-SCCEEEEEETTEEEEEEECT
T ss_pred cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEE---EeccCCC-CCcEEEEecCCCcEEEEccC
Confidence 2456677889999999998875433221100000000 111112222 2333311 23368899999999888775
Q ss_pred CCCC-ceeeeecCccCeEEEEEecCC----CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 240 NPGI-PLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 240 ~~~~-~~~~~~~h~~~v~~~~~~~~~----~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
.... ....+.+|..+|.+++|+|++ ..+++++.|+.|++||++......... ...........++....++
T Consensus 201 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE----ESLTNSNMFDNSADVDMDA 276 (351)
T ss_dssp TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC----CcccceeccCCCccccccc
Confidence 4321 256678899999999999987 689999999999999997432211111 1111222233333333333
Q ss_pred ----EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 315 ----TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 315 ----s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+.....+.+|+..+.+.+..+.+|...|.+++|+|++++||+++.|+.|++|++..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 3344566777777777888899999999999999999999999999999999999754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=254.79 Aligned_cols=250 Identities=15% Similarity=0.215 Sum_probs=178.8
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee----eeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW----VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....|..+|++|+|++++ .|++|+.||+|+|||+.+++.+.... +|. ..|.+++|++ ++++|++|+.|++|
T Consensus 77 ~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~--~~V~~v~~sp--dg~~l~sgs~d~~i 151 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHD--DIVSTVSVLS--SGTQAVSGSKDICI 151 (344)
T ss_dssp EEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCS--SCEEEEEECT--TSSEEEEEETTSCE
T ss_pred eeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCC--CCEEEEEECC--CCCEEEEEeCCCeE
Confidence 344578899999999985 68899999999999999887654432 343 4588899987 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+||+.++++. .....|...+ .+. .+.+.+ ..+++++
T Consensus 152 ~iwd~~~~~~~-------~~~~~h~~~V-----------------~~~------------------~~~~~~-~~~l~s~ 188 (344)
T 4gqb_B 152 KVWDLAQQVVL-------SSYRAHAAQV-----------------TCV------------------AASPHK-DSVFLSC 188 (344)
T ss_dssp EEEETTTTEEE-------EEECCCSSCE-----------------EEE------------------EECSSC-TTEEEEE
T ss_pred EEEECCCCcEE-------EEEcCcCCce-----------------EEE------------------EecCCC-CCceeee
Confidence 99999886421 1111110000 000 011122 2356778
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|++|++||+++++....+.... .. ....+ ..+.+. +...+++|+.||+|++||+++ ..++..+
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~--------~~--~~~~~-~~~~p~---~~~~l~sg~~dg~v~~wd~~~-~~~~~~~ 253 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSA--------PG--YLPTS-LAWHPQ---QSEVFVFGDENGTVSLVDTKS-TSCVLSS 253 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC------------C--CCEEE-EEECSS---CTTEEEEEETTSEEEEEESCC---CCEEE
T ss_pred ccccccccccccccceeeeeecce--------ee--cccee-eeecCC---CCcceEEeccCCcEEEEECCC-CcEEEEE
Confidence 889999999999998776654211 00 11111 123332 233588899999999999986 4567789
Q ss_pred ecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEE
Q 017296 249 KVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAGWDRRVRIYN 326 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd 326 (374)
.+|..+|++++|+|++ ..+++||.|++|++||++.. .. .....|...|.+++|+|+++ +|++++.|++|++|+
T Consensus 254 ~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~~---~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 254 AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS--EL---FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC--EE---EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--cE---EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 9999999999999987 46889999999999998643 22 23456888999999999986 577999999999999
Q ss_pred ccCC
Q 017296 327 YRKG 330 (374)
Q Consensus 327 ~~~~ 330 (374)
+.+.
T Consensus 329 v~~~ 332 (344)
T 4gqb_B 329 VPTE 332 (344)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=258.20 Aligned_cols=300 Identities=15% Similarity=0.226 Sum_probs=213.9
Q ss_pred CeEEeec--CCCceeEEEEeCCCC-EEEEecCCCcEEEEeC----cccc------eeeeeeeee--------ceeeeEEe
Q 017296 10 PVAVLRG--HRASVTDVCFHQTKP-ILFAGTTGGELRIWDT----VQHR------TVSSSWVHS--------AAHGIVSV 68 (374)
Q Consensus 10 ~~~~l~g--H~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~----~~~~------~~~~~~~~~--------~~~~~~~~ 68 (374)
....+.. |.++|++++|+|+++ +|++|+.|+.|++||+ .+++ ....+.... ....+.++
T Consensus 35 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 35 FVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp CCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE
T ss_pred hhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE
Confidence 4445554 559999999999999 9999999999999999 7777 333332200 12358888
Q ss_pred ccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCC
Q 017296 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS 148 (374)
Q Consensus 69 ~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
++++ ++++|++++.|++|++||. +++.. ..+........ +..
T Consensus 115 ~~s~--~~~~l~~~~~dg~i~i~~~-~~~~~----~~~~~~~~~v~--------------------~~~----------- 156 (425)
T 1r5m_A 115 AWSH--DGNSIVTGVENGELRLWNK-TGALL----NVLNFHRAPIV--------------------SVK----------- 156 (425)
T ss_dssp EECT--TSSEEEEEETTSCEEEEET-TSCEE----EEECCCCSCEE--------------------EEE-----------
T ss_pred EEcC--CCCEEEEEeCCCeEEEEeC-CCCee----eeccCCCccEE--------------------EEE-----------
Confidence 9987 6789999999999999993 33210 00100000000 000
Q ss_pred CCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCC----CCcCCCCC-cceeEEEeeecCCCCCceE
Q 017296 149 LCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS----PNFSSKGR-GMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 223 (374)
+.+ +.. ++++++.|+.|++||+++++.+..+........ ..+..... ..++ .+.++ + .
T Consensus 157 -------~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~--~ 219 (425)
T 1r5m_A 157 -------WNK-DGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV---EWVDD---D--K 219 (425)
T ss_dssp -------ECT-TSS-EEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCC---EEEET---T--E
T ss_pred -------ECC-CCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEE---EEcCC---C--E
Confidence 111 223 345666789999999999987776653321100 00000000 1111 12221 2 4
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
+++++.||.|++||++. ......+..|..+|.++.+++++..+++++.|+.|++||++...... .+..+...+.+
T Consensus 220 ~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~i~~ 294 (425)
T 1r5m_A 220 FVIPGPKGAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN----CFYGHSQSIVS 294 (425)
T ss_dssp EEEECGGGCEEEEETTC-SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE----EECCCSSCEEE
T ss_pred EEEEcCCCeEEEEEcCC-CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce----EecCCCccEEE
Confidence 88999999999999986 45566788899999999999999999999999999999987543322 23446678999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|+|++ ++++++.|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|++.
T Consensus 295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999984
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=263.14 Aligned_cols=296 Identities=12% Similarity=0.118 Sum_probs=197.6
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc--ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
...++.|.++|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|. ..+.++++++ ++++|++++.|++|
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~s~d~~v 79 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHD--KIVTCVDWAP--KSNRIVTCSQDRNA 79 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCS--SCEEEEEECT--TTCCEEEEETTSSE
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCC--ceEEEEEEeC--CCCEEEEEeCCCeE
Confidence 3466778899999999999999999999999999999887 6667777775 3588888887 56899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++.. .+........... .+. .+.++ .. +++++
T Consensus 80 ~vwd~~~~~~~-~~~~~~~~~~~~v--------------------~~~------------------~~~~~-~~-~l~~~ 118 (377)
T 3dwl_C 80 YVYEKRPDGTW-KQTLVLLRLNRAA--------------------TFV------------------RWSPN-ED-KFAVG 118 (377)
T ss_dssp EEC------CC-CCEEECCCCSSCE--------------------EEE------------------ECCTT-SS-CCEEE
T ss_pred EEEEcCCCCce-eeeeEecccCCce--------------------EEE------------------EECCC-CC-EEEEE
Confidence 99999876410 0000000000000 000 01111 12 34566
Q ss_pred cCCCeEEEEecCCCce---eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC----
Q 017296 169 EQLSEVEIWDLNTAER---CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---- 241 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~---- 241 (374)
+.|+.|++||+++++. ...+... ......++ .+.++ ...+++|+.||.|++||++..
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~~---------h~~~v~~~---~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~ 182 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKRP---------LRSTILSL---DWHPN----NVLLAAGCADRKAYVLSAYVRDVDA 182 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECSS---------CCSCEEEE---EECTT----SSEEEEEESSSCEEEEEECCSSCC-
T ss_pred ecCCeEEEEEECCcccceeeeEeecc---------cCCCeEEE---EEcCC----CCEEEEEeCCCEEEEEEEEecccCC
Confidence 7789999999998763 3344320 11111221 24332 236899999999999998521
Q ss_pred -------------CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 242 -------------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 242 -------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
...+..+ +|..+|.+++|+|++..+++++.|++|++||++...........+..|...+.+++|+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 261 (377)
T 3dwl_C 183 KPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261 (377)
T ss_dssp CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEE
T ss_pred Cccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcC
Confidence 1234445 89999999999999999999999999999999865542222344566777899999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCe---------------------------------------EEEE-------------e
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGS---------------------------------------ALAI-------------L 336 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~---------------------------------------~~~~-------------~ 336 (374)
++++|++++.|+.+ +|+..... .... .
T Consensus 262 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 340 (377)
T 3dwl_C 262 ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLP 340 (377)
T ss_dssp TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCS
T ss_pred CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccC
Confidence 99999998877766 66554211 0000 1
Q ss_pred cccCCceEEEEEeCCC-C---EEEEEeCCCcEEEecC
Q 017296 337 KYHHATCNAVSFSSDC-K---LMASASEDSTVALWEL 369 (374)
Q Consensus 337 ~~h~~~v~~v~~sp~~-~---~las~s~D~~v~~W~~ 369 (374)
..|.+.|.++++.+.+ . .|+|+|.||+|++|++
T Consensus 341 ~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 341 TVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1299999999976543 3 6999999999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-34 Score=264.49 Aligned_cols=295 Identities=15% Similarity=0.223 Sum_probs=211.7
Q ss_pred CCCceeEEEEeCCCC-EEEEe----------cCCCcEEEEeCcccc---eeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 17 HRASVTDVCFHQTKP-ILFAG----------TTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 17 H~~~V~~l~~~~~~~-~l~s~----------s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
+...|.+++|+|++. +|++| +.|+.|+|||+.+++ .+..+ .|. ..+.+++|++ ++++|+++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~--~~v~~~~~s~--~~~~l~~~ 85 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVD--SKFNDLDWSH--NNKIIAGA 85 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCS--SCEEEEEECS--SSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecC--CceEEEEECC--CCCeEEEE
Confidence 456899999999987 99999 899999999998775 33332 243 4588889987 66899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.|++|++||+.+...... .+.....|. ....+.. +.+.+..
T Consensus 86 ~~dg~v~vw~~~~~~~~~~---~~~~~~~h~-----------------~~v~~~~------------------~~~~~~~ 127 (416)
T 2pm9_A 86 LDNGSLELYSTNEANNAIN---SMARFSNHS-----------------SSVKTVK------------------FNAKQDN 127 (416)
T ss_dssp ESSSCEEEECCSSTTSCCC---EEEECCCSS-----------------SCCCEEE------------------ECSSSTT
T ss_pred ccCCeEEEeeccccccccc---chhhccCCc-----------------cceEEEE------------------EcCCCCC
Confidence 9999999999986211000 010000000 0000000 1122123
Q ss_pred eEEEcccCCCeEEEEecCCCc------eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEE
Q 017296 163 YMAVAGEQLSEVEIWDLNTAE------RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iw 236 (374)
++++++.|++|++||+++++ ....+.. .........++ .+.++ +...+++++.||.|++|
T Consensus 128 -~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~---~~~~~---~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 128 -VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-------SMSSVDEVISL---AWNQS---LAHVFASAGSSNFASIW 193 (416)
T ss_dssp -BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-------SCCSSCCCCEE---EECSS---CTTEEEEESSSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcccccccccccccc-------ccCCCCCeeEE---EeCCC---CCcEEEEEcCCCCEEEE
Confidence 45667788999999999876 2221110 00111122222 23332 23368999999999999
Q ss_pred eccCCCCceeeeecC------ccCeEEEEEecCC-CceEEEecCC---eEEEEEcCCCCCeEEEEEeee-cCCCCeEEEE
Q 017296 237 DIRNPGIPLTAMKVH------LEPVLCLSIDESC-NGGISGGADQ---KIVLYNLDHSTGSCVIKKEIN-LERPGISGTS 305 (374)
Q Consensus 237 dl~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~~~ 305 (374)
|++. ......+..| ..++.++.|+|++ ..+++++.|+ .|++||++..... ...+. .|...+.+++
T Consensus 194 d~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~~~~~~~~~v~~~~ 269 (416)
T 2pm9_A 194 DLKA-KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQTLNQGHQKGILSLD 269 (416)
T ss_dssp ETTT-TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBCCCSCCSSCEEEEE
T ss_pred ECCC-CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEEeecCccCceeEEE
Confidence 9986 3445556555 7899999999986 5788999998 9999999754211 12234 5667899999
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecCCCC
Q 017296 306 IRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 306 ~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~~~~ 372 (374)
|+| ++++|++++.||+|++||+.+++.+..+.+|...|.+++|+|++ ++|++++.|+.|++|++..+
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 999 99999999999999999999999999999999999999999999 79999999999999998654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=255.32 Aligned_cols=297 Identities=16% Similarity=0.231 Sum_probs=212.9
Q ss_pred CCCCCCCeEEee--cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 4 RPPPPDPVAVLR--GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 4 ~~~~~~~~~~l~--gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
|+.+..|..++. +|...+...+++.++..+++++.|+.|++||..+++....+..+ ....+.++++++ ++++|++
T Consensus 75 r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~ 151 (401)
T 4aez_A 75 RRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSH--DGSFLSV 151 (401)
T ss_dssp CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC-TTCCEEEEEECT--TSSEEEE
T ss_pred CcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC-CCCCEEEEEECC--CCCEEEE
Confidence 444555666666 88888766555555567889999999999999998876655432 234588889987 6689999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
|+.|++|++||+.+++... .+. .|...+ .+..+ ++
T Consensus 152 ~~~dg~i~iwd~~~~~~~~----~~~---~~~~~v-----------------~~~~~---------------------~~ 186 (401)
T 4aez_A 152 GLGNGLVDIYDVESQTKLR----TMA---GHQARV-----------------GCLSW---------------------NR 186 (401)
T ss_dssp EETTSCEEEEETTTCCEEE----EEC---CCSSCE-----------------EEEEE---------------------ET
T ss_pred ECCCCeEEEEECcCCeEEE----Eec---CCCCce-----------------EEEEE---------------------CC
Confidence 9999999999998764210 000 000000 00000 01
Q ss_pred ceEEEcccCCCeEEEEecCCC-ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
. ++++++.|+.|++||++.. .....+..+ .....+ ..+.++ ...+++|+.||.|++||+++
T Consensus 187 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~v~~---~~~~~~----~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 187 H-VLSSGSRSGAIHHHDVRIANHQIGTLQGH----------SSEVCG---LAWRSD----GLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp T-EEEEEETTSEEEEEETTSSSCEEEEEECC----------SSCEEE---EEECTT----SSEEEEEETTSCEEEEETTC
T ss_pred C-EEEEEcCCCCEEEEecccCcceeeEEcCC----------CCCeeE---EEEcCC----CCEEEEEeCCCeEEEccCCC
Confidence 2 4667788999999999954 444444321 111111 123332 23689999999999999986
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceE-EEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGI-SGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
..+...+..|..+|.+++|+|++..++ +++ .|+.|++||++... ... .+. +...+.+++|+|+++++++++
T Consensus 249 -~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--~~~--~~~-~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 249 -SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--RVN--TVD-AGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp -SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--EEE--EEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred -CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--EEE--EEe-CCCcEEEEEECCCCCeEEEEe
Confidence 456677888999999999999765554 444 69999999997543 222 222 345799999999999999854
Q ss_pred --CCCeEEEEEccCCeEEE--EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 318 --WDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 318 --~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.||.|++||+.+++... .+.+|...|.+++|+|+|++|++++.|++|++|++..+
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 89999999999865544 46789999999999999999999999999999999764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=274.31 Aligned_cols=297 Identities=11% Similarity=0.066 Sum_probs=194.2
Q ss_pred EEeecCCCceeEEEEeCC------CCEEEEecCCCcEEEEeCccccee-----------eeeeeeeceeeeEEeccCCcc
Q 017296 12 AVLRGHRASVTDVCFHQT------KPILFAGTTGGELRIWDTVQHRTV-----------SSSWVHSAAHGIVSVATGPSI 74 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~------~~~l~s~s~D~~v~vWd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 74 (374)
.++.+|.+.|++|+|+|+ +.+|+|++.|++|+|||+.+++.. ..+.+|. ..+.+++|++
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~--~~v~sv~~s~-- 276 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD--SLITTFDFLS-- 276 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT--TCEEEEEESS--
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC--CCEEEEEecC--
Confidence 457889999999999986 579999999999999999765421 2344443 4578888876
Q ss_pred ccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCC
Q 017296 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD 154 (374)
Q Consensus 75 ~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (374)
+ ..|++|+.||+|++||++++.. +...+..+...+..+..
T Consensus 277 ~-~~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv~~------------------------------------ 316 (524)
T 2j04_B 277 P-TTVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSVST------------------------------------ 316 (524)
T ss_dssp S-SEEEEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEEEE------------------------------------
T ss_pred C-CeEEEEeCCCEEEEEECCCCCC---ceEEeecccccEEEEEE------------------------------------
Confidence 2 4799999999999999986532 11111111000000000
Q ss_pred CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE
Q 017296 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (374)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~ 234 (374)
.+ ++.+..++++++.|++|+|||+++++++..+..+. ......++ .|.|+ +. .+++++.|++|+
T Consensus 317 ~~-s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------~~~~v~~v---~fsp~---~~-~l~s~~~d~tv~ 380 (524)
T 2j04_B 317 AY-SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------RGSNLVPV---VYCPQ---IY-SYIYSDGASSLR 380 (524)
T ss_dssp EC-CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------SCCSCCCE---EEETT---TT-EEEEECSSSEEE
T ss_pred Ec-CCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------ccCcccce---EeCCC---cC-eEEEeCCCCcEE
Confidence 00 11111467788899999999999887654443221 00011111 24443 22 488899999999
Q ss_pred EEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee-ecCCCCeEEEEECCCCCEE
Q 017296 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 235 iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l 313 (374)
+||++.. ..+.++.+|..+|.+++|+|++..+++|+.|++|++||+....-.. ..... ..+...+.+++|+|+++.+
T Consensus 381 lwd~~~~-~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 381 AVPSRAA-FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG-IKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp EEETTCT-TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC-C------CCCCEEEECBCCSSSCEE
T ss_pred EEECccc-ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc-cccCccceeeeEEEEeccCCCCCeE
Confidence 9999864 4456788999999999999999999999999999999985421110 00000 0111246789999999855
Q ss_pred EEEeCCCeEEEEEcc-CCeEEEEecccCCceEEEEEeCCCC---EEEEEeCCCcEEEecCCCCC
Q 017296 314 ATAGWDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCK---LMASASEDSTVALWELYPPH 373 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~---~las~s~D~~v~~W~~~~~~ 373 (374)
. . .| .+++|+.. ++..+.++.+|...|++|+|+|+++ +||+|+.||+||||++...|
T Consensus 459 ~-~-~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 459 R-I-DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp E-E-CC-CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred E-c-cC-CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 3 2 22 33344332 4677788999999999999999964 99999999999999997554
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=258.98 Aligned_cols=280 Identities=17% Similarity=0.327 Sum_probs=208.5
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
..+....+|...|++++| ++++|++|+.|++|++||..+++.+..+.+|.. .+.++.+ +++.+++|+.||+|
T Consensus 124 ~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~----~~~~l~sg~~dg~i 195 (435)
T 1p22_A 124 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--SVLCLQY----DERVIITGSSDSTV 195 (435)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS--CEEEEEC----CSSEEEEEETTSCE
T ss_pred eEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC--cEEEEEE----CCCEEEEEcCCCeE
Confidence 344455678889998887 789999999999999999999988888877754 4777776 34799999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++.. .....|... +... .+ .+. +++++
T Consensus 196 ~vwd~~~~~~~-------~~~~~h~~~---------------------------v~~l--------~~---~~~-~l~s~ 229 (435)
T 1p22_A 196 RVWDVNTGEML-------NTLIHHCEA---------------------------VLHL--------RF---NNG-MMVTC 229 (435)
T ss_dssp EEEESSSCCEE-------EEECCCCSC---------------------------EEEE--------EC---CTT-EEEEE
T ss_pred EEEECCCCcEE-------EEEcCCCCc---------------------------EEEE--------EE---cCC-EEEEe
Confidence 99999887421 110000000 0000 00 012 46677
Q ss_pred cCCCeEEEEecCCCceeE---EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 169 EQLSEVEIWDLNTAERCT---RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
+.|++|++||+++++... .+..+ .....++ .+ ....+++|+.||.|++||+++ ...+
T Consensus 230 s~dg~i~vwd~~~~~~~~~~~~~~~~----------~~~v~~~---~~------~~~~l~s~~~dg~i~vwd~~~-~~~~ 289 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDITLRRVLVGH----------RAAVNVV---DF------DDKYIVSASGDRTIKVWNTST-CEFV 289 (435)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCC----------SSCEEEE---EE------ETTEEEEEETTSEEEEEETTT-CCEE
T ss_pred eCCCcEEEEeCCCCCCceeeeEecCC----------CCcEEEE---Ee------CCCEEEEEeCCCeEEEEECCc-CcEE
Confidence 889999999999876542 22211 1111111 12 112689999999999999986 4567
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..+.+|..+|.++.+++ ..+++|+.|++|++||++... +. ..+..|...+.+++| ++++|++|+.||+|++|
T Consensus 290 ~~~~~~~~~v~~~~~~~--~~l~~g~~dg~i~iwd~~~~~--~~--~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vw 361 (435)
T 1p22_A 290 RTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGA--CL--RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361 (435)
T ss_dssp EEEECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCC--EE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCcEEEEEeCC--CEEEEEeCCCeEEEEECCCCC--EE--EEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEE
Confidence 78889999999999964 578999999999999997542 22 345567778999988 78899999999999999
Q ss_pred EccCCe---------EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 326 NYRKGS---------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 326 d~~~~~---------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
|+.+++ .+..+.+|.+.|.+++| ++++|++++.|++|++|++..+
T Consensus 362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 997765 78889999999999999 7889999999999999998543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=288.64 Aligned_cols=297 Identities=18% Similarity=0.276 Sum_probs=217.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....++.+|.+.|++++|+|+|++|++|+.|++|++||..+++.+..+.+|. ..+.+++|++ +++++++++.|++|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~--~~~~l~s~~~d~~v 681 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSS--DDSYIATCSADKKV 681 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSEE
T ss_pred cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC--CCEEEEEEec--CCCEEEEEeCCCeE
Confidence 3456889999999999999999999999999999999999999888887775 3588899987 66899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++... ....+..... +. .+.+.+...++++|
T Consensus 682 ~vwd~~~~~~~~----~~~~~~~~v~--------------------~~------------------~~~~~~~~~~l~sg 719 (1249)
T 3sfz_A 682 KIWDSATGKLVH----TYDEHSEQVN--------------------CC------------------HFTNKSNHLLLATG 719 (1249)
T ss_dssp EEEETTTCCEEE----EEECCSSCEE--------------------EE------------------EECSSSSCCEEEEE
T ss_pred EEEECCCCceEE----EEcCCCCcEE--------------------EE------------------EEecCCCceEEEEE
Confidence 999998874211 1100000000 00 01122234567788
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc----
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP---- 244 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~---- 244 (374)
+.|++|++||++++++...+..+. ....+ ..+.++ + ..+++++.||+|++||++.....
T Consensus 720 ~~d~~v~vwd~~~~~~~~~~~~h~----------~~v~~---~~~sp~---~-~~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 720 SNDFFLKLWDLNQKECRNTMFGHT----------NSVNH---CRFSPD---D-ELLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp ETTSCEEEEETTSSSEEEEECCCS----------SCEEE---EEECSS---T-TEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred eCCCeEEEEECCCcchhheecCCC----------CCEEE---EEEecC---C-CEEEEEECCCeEEEEeCCCCcccceec
Confidence 889999999999998877765321 11111 123332 2 26888999999999998642110
Q ss_pred -------------------------------------------------e-eeeecCccCeEEEEEecCCCceEEEecCC
Q 017296 245 -------------------------------------------------L-TAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (374)
Q Consensus 245 -------------------------------------------------~-~~~~~h~~~v~~~~~~~~~~~~~s~s~D~ 274 (374)
. ....+|...+.++.|++++..+++++.|+
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 862 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY 862 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSS
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCC
Confidence 0 01126788999999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc--------------------------
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-------------------------- 328 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-------------------------- 328 (374)
.|++||++.. .. ...+..|...+.+++|+|+++++++++.||+|++||+.
T Consensus 863 ~v~vwd~~~~--~~--~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 863 CVELWNIDSR--LK--VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp CEEEEETTTT--EE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCC--ce--eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 9999999743 22 22344556667777777777777777777777777643
Q ss_pred -----------------------------------------------------CCeEEEEecccCCceEEEEEeCCCCEE
Q 017296 329 -----------------------------------------------------KGSALAILKYHHATCNAVSFSSDCKLM 355 (374)
Q Consensus 329 -----------------------------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~l 355 (374)
+++....+.+|...|.+++|+|+|++|
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence 334455667899999999999999999
Q ss_pred EEEeCCCcEEEecCCCC
Q 017296 356 ASASEDSTVALWELYPP 372 (374)
Q Consensus 356 as~s~D~~v~~W~~~~~ 372 (374)
++++.|++|++|++..+
T Consensus 1019 ~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp EEECSSSBEEEEETTTT
T ss_pred EEEcCCCEEEEEECCCC
Confidence 99999999999998653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=247.74 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=188.6
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+...++||...|++++|++++.+++|++.|++|++||+.+++.+..+..|. ..+.++++++ +++++++++.|++|+
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~sp--dg~~l~~g~~dg~v~ 147 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSP--DSQYLATGTHVGKVN 147 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCCCCEEECT--TSSEEEEECTTSEEE
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--ccEEEEEECC--CCCEEEEEcCCCcEE
Confidence 345789999999999999999999999999999999999998887776554 3466777877 678999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||+++++.. ..+........ +. .+.+ +.+ ++++++
T Consensus 148 i~~~~~~~~~----~~~~~~~~~v~--------------------~~------------------~~sp-dg~-~lasg~ 183 (321)
T 3ow8_A 148 IFGVESGKKE----YSLDTRGKFIL--------------------SI------------------AYSP-DGK-YLASGA 183 (321)
T ss_dssp EEETTTCSEE----EEEECSSSCEE--------------------EE------------------EECT-TSS-EEEEEE
T ss_pred EEEcCCCcee----EEecCCCceEE--------------------EE------------------EECC-CCC-EEEEEc
Confidence 9999876321 01100000000 00 0111 223 456777
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|+.|++||+++++.+..+..+. . ...++ .|.++ ...+++|+.||+|++||++. ......+.
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~--------~--~v~~l---~~spd----~~~l~s~s~dg~i~iwd~~~-~~~~~~~~ 245 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHA--------M--PIRSL---TFSPD----SQLLVTASDDGYIKIYDVQH-ANLAGTLS 245 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCS--------S--CCCEE---EECTT----SCEEEEECTTSCEEEEETTT-CCEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcccC--------C--ceeEE---EEcCC----CCEEEEEcCCCeEEEEECCC-cceeEEEc
Confidence 89999999999998877765321 1 11111 24332 23689999999999999986 44567788
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+|...|.+++|+|++..+++++.|++|++||++.. .+. ..+..|...|.+++|+|++++|++++.||+|++||.
T Consensus 246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--~~~--~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--TCV--HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEE--EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--EEE--EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999999999999999999643 332 344567788999999999999999999999999996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=254.55 Aligned_cols=282 Identities=11% Similarity=0.127 Sum_probs=207.6
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc---eeeeeeeeeceeeeEEeccCCccccc-eeeeccccC
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~ 86 (374)
+....+|.+.|++++|+|++.+|++++.|+.|++||+.+++ .+..+..|. ..+.++++++ +++ .+++++.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~l~~~~~dg 79 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFID--NTDLQIYVGTVQG 79 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEE--SSSEEEEEEETTS
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC--CceEEEEECC--CCCcEEEEEcCCC
Confidence 34456899999999999999999999999999999998776 234444454 4578888876 568 899999999
Q ss_pred eEEEEec-CCCCCCCCCceeeee--cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 87 TVKCWDI-ENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 87 ~vrvwd~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
+|++||+ .+++. ..+.. ...... +.. +.+ ..
T Consensus 80 ~i~~wd~~~~~~~-----~~~~~~~~~~~v~--------------------~l~------------------~~~--~~- 113 (342)
T 1yfq_A 80 EILKVDLIGSPSF-----QALTNNEANLGIC--------------------RIC------------------KYG--DD- 113 (342)
T ss_dssp CEEEECSSSSSSE-----EECBSCCCCSCEE--------------------EEE------------------EET--TT-
T ss_pred eEEEEEeccCCce-----EeccccCCCCceE--------------------EEE------------------eCC--CC-
Confidence 9999999 76531 01000 000000 000 011 12
Q ss_pred EEEcccCCCeEEEEecCC---------CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE
Q 017296 164 MAVAGEQLSEVEIWDLNT---------AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~ 234 (374)
++++++.|+.|++||+++ ++.+..+. ......++ .+.++ .+++++.|+.|+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~---~~~~~------~l~~~~~d~~i~ 173 (342)
T 1yfq_A 114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-----------VKNKIFTM---DTNSS------RLIVGMNNSQVQ 173 (342)
T ss_dssp EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----------SCCCEEEE---EECSS------EEEEEESTTEEE
T ss_pred EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-----------eCCceEEE---EecCC------cEEEEeCCCeEE
Confidence 355677889999999986 44322221 11122222 23221 388999999999
Q ss_pred EEeccC-CCCc-eeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCC------CCeEEEEEeeecCC-------
Q 017296 235 VWDIRN-PGIP-LTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHS------TGSCVIKKEINLER------- 298 (374)
Q Consensus 235 iwdl~~-~~~~-~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~------~~~~~~~~~~~~~~------- 298 (374)
+||++. .... ......|..++.++.+++ ++..+++++.||.|++|+++.. ..... +..+.
T Consensus 174 i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 249 (342)
T 1yfq_A 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA----FRCHRLNLKDTN 249 (342)
T ss_dssp EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE----EECCCCCTTCCS
T ss_pred EEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee----eecccccccccc
Confidence 999986 4332 233456788999999999 9999999999999999999765 22222 23333
Q ss_pred --CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc-CCceEEEEEeCCCCEEEEEeCCCc-EEEec
Q 017296 299 --PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASASEDST-VALWE 368 (374)
Q Consensus 299 --~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~las~s~D~~-v~~W~ 368 (374)
..+.+++|+|++++|++++.||+|++||+.+++.+..+.+| ...|.+++ |++++|++++.|++ .+.|.
T Consensus 250 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred cceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 37999999999999999999999999999999999999998 99999999 99999999999999 44444
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=254.62 Aligned_cols=281 Identities=24% Similarity=0.429 Sum_probs=211.3
Q ss_pred CCCeEEeecCCCce-eEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 8 PDPVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 8 ~~~~~~l~gH~~~V-~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
.++...+.||.+.| .++ .+++++|++|+.|++|++||+.+++.+..+.+|.. .+.++.++ ++.+++|+.|+
T Consensus 108 ~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~----~~~l~s~~~dg 179 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG--GVWSSQMR----DNIIISGSTDR 179 (445)
T ss_dssp CCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSS--CEEEEEEE----TTEEEEEETTS
T ss_pred cceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCC--CEEEEEec----CCEEEEEeCCC
Confidence 34678899999986 554 45689999999999999999999998888877764 46777765 36899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+|++||+.+++.. .....|...+ .+... .+. .++
T Consensus 180 ~i~vwd~~~~~~~-------~~~~~h~~~v-----------------~~~~~---------------------~~~-~l~ 213 (445)
T 2ovr_B 180 TLKVWNAETGECI-------HTLYGHTSTV-----------------RCMHL---------------------HEK-RVV 213 (445)
T ss_dssp CEEEEETTTTEEE-------EEECCCSSCE-----------------EEEEE---------------------ETT-EEE
T ss_pred eEEEEECCcCcEE-------EEECCCCCcE-----------------EEEEe---------------------cCC-EEE
Confidence 9999999876321 1100000000 00000 012 356
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+++.|++|++||+++++.+..+..+. ....++ .+ + + ..+++|+.||.|++||+++ ...+.
T Consensus 214 s~s~dg~i~~wd~~~~~~~~~~~~~~----------~~v~~~---~~--~---~-~~l~~~~~dg~i~iwd~~~-~~~~~ 273 (445)
T 2ovr_B 214 SGSRDATLRVWDIETGQCLHVLMGHV----------AAVRCV---QY--D---G-RRVVSGAYDFMVKVWDPET-ETCLH 273 (445)
T ss_dssp EEETTSEEEEEESSSCCEEEEEECCS----------SCEEEE---EE--C---S-SCEEEEETTSCEEEEEGGG-TEEEE
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCc----------ccEEEE---EE--C---C-CEEEEEcCCCEEEEEECCC-CcEeE
Confidence 77889999999999998777665321 111121 12 1 1 2589999999999999986 45677
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.+.+|..+|.++.+ ++..+++++.|+.|++||++... .. ..+..|...+.++.+ +++++++++.||+|++||
T Consensus 274 ~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~--~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN--CI--HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC--EE--EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC--EE--EEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEE
Confidence 78899999999999 45678999999999999997543 22 334456666776666 467999999999999999
Q ss_pred ccCCeEEEEecc---cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRKGSALAILKY---HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~~~~~~~~~~---h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.+++.+..+.. |...|.+++|+ +++|++++.|++|++|++..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 999999988886 88899999995 589999999999999998754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=253.93 Aligned_cols=299 Identities=14% Similarity=0.166 Sum_probs=209.2
Q ss_pred eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
+.+| ..+...+|++++++|++|+.|+.|++||+.+++....+..|. ..+.++++++ +++.|++++.|++|++||+
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV--SEITKLKFFP--SGEALISSSQDMQLKIWSV 168 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS--SCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc--CccEEEEECC--CCCEEEEEeCCCeEEEEeC
Confidence 4455 444555789999999999999999999999887766655665 4588889987 5679999999999999999
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
.+++... .+..+......+ . +.++ .. ++++++.|++
T Consensus 169 ~~~~~~~----~~~~h~~~v~~~--------------------~------------------~~~~-~~-~l~s~~~d~~ 204 (420)
T 3vl1_A 169 KDGSNPR----TLIGHRATVTDI--------------------A------------------IIDR-GR-NVLSASLDGT 204 (420)
T ss_dssp TTCCCCE----EEECCSSCEEEE--------------------E------------------EETT-TT-EEEEEETTSC
T ss_pred CCCcCce----EEcCCCCcEEEE--------------------E------------------EcCC-CC-EEEEEcCCCc
Confidence 8774321 111110000000 0 0111 22 3557778899
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe--------------eecCCCCCceEEEEEecCCcEEEEecc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA--------------YLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
|++||+++++.+..+..+... .....++.... .....+.....+++|+.||.|++||++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 277 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENP-------HDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF 277 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBT-------TCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred EEEeECCCCceeEEeecCCCC-------CCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence 999999999887776542110 00011111000 000011233468999999999999998
Q ss_pred CCCCceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeee-cCCCCeEEEEECCCCCEEEEEe
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEIN-LERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
...........|..+|.+++|+|++. .+++++.||.|++||++...... ..+. .+...+.++.+ |++++|++++
T Consensus 278 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~---~~~~~~~~~~v~~~~~-~~~~~l~s~~ 353 (420)
T 3vl1_A 278 SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV---GEFLINEGTPINNVYF-AAGALFVSSG 353 (420)
T ss_dssp TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS---EEEEESTTSCEEEEEE-ETTEEEEEET
T ss_pred CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch---hhhhccCCCCceEEEe-CCCCEEEEec
Confidence 75544444456889999999999988 89999999999999997643211 1122 24556777755 5788999999
Q ss_pred CCCeEEEEEccCCe---------EEEEecccCCceEEEEEeCCCC---EEEEEeCCCcEEEecCCCC
Q 017296 318 WDRRVRIYNYRKGS---------ALAILKYHHATCNAVSFSSDCK---LMASASEDSTVALWELYPP 372 (374)
Q Consensus 318 ~dg~v~iwd~~~~~---------~~~~~~~h~~~v~~v~~sp~~~---~las~s~D~~v~~W~~~~~ 372 (374)
.|++|++||+.+++ ....+.+|...|.+++|+|+++ .|++++.++.+++|++++|
T Consensus 354 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 354 FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 99999999987631 1234667889999999999999 7888888999999999876
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=252.35 Aligned_cols=283 Identities=19% Similarity=0.347 Sum_probs=216.1
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..+++..+.+|.++|++++|+ +++|++|+.|++|++||+.+++.+..+.+|.. .+.++.++ ++.+++++.|+
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~----~~~l~s~s~dg 219 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTS--TVRCMHLH----EKRVVSGSRDA 219 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEE----TTEEEEEETTS
T ss_pred CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC--cEEEEEec----CCEEEEEeCCC
Confidence 346788999999999999997 67999999999999999999988888777753 46677664 36899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+|++||+.+++.. ..+........ +.. . ++. +++
T Consensus 220 ~i~~wd~~~~~~~----~~~~~~~~~v~--------------------~~~--------------------~-~~~-~l~ 253 (445)
T 2ovr_B 220 TLRVWDIETGQCL----HVLMGHVAAVR--------------------CVQ--------------------Y-DGR-RVV 253 (445)
T ss_dssp EEEEEESSSCCEE----EEEECCSSCEE--------------------EEE--------------------E-CSS-CEE
T ss_pred EEEEEECCCCcEE----EEEcCCcccEE--------------------EEE--------------------E-CCC-EEE
Confidence 9999999876421 01100000000 000 0 112 355
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+++.|+.|++||+++++.+..+..+. ....++ .+ ....+++|+.||.|++||+++ ...+.
T Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~v~~~---~~------~~~~l~~~~~d~~i~i~d~~~-~~~~~ 313 (445)
T 2ovr_B 254 SGAYDFMVKVWDPETETCLHTLQGHT----------NRVYSL---QF------DGIHVVSGSLDTSIRVWDVET-GNCIH 313 (445)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCS----------SCEEEE---EE------CSSEEEEEETTSCEEEEETTT-CCEEE
T ss_pred EEcCCCEEEEEECCCCcEeEEecCCC----------CceEEE---EE------CCCEEEEEeCCCeEEEEECCC-CCEEE
Confidence 67778999999999998777765321 111111 12 122689999999999999986 45677
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee---cCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+.+|...+.++.+++ ..+++++.||.|++||++... .. ..+. .|...+.+++|+ +++|++|+.||+|+
T Consensus 314 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vwd~~~~~--~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 314 TLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ--CL--QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK 385 (445)
T ss_dssp EECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCC--EE--EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred EEcCCcccEEEEEEeC--CEEEEEeCCCeEEEEECCCCc--EE--EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEE
Confidence 7889999999999875 478999999999999996543 22 2222 256679999996 57999999999999
Q ss_pred EEEccCCeEEEEe-----cccCCceEEEEEeCCCCEEEEEeCCCc----EEEecCCC
Q 017296 324 IYNYRKGSALAIL-----KYHHATCNAVSFSSDCKLMASASEDST----VALWELYP 371 (374)
Q Consensus 324 iwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~las~s~D~~----v~~W~~~~ 371 (374)
+||+.+++.+..+ ..|.+.|++++|+|++.+||+++.||+ |.+||+..
T Consensus 386 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999988877 468889999999999999999999998 99999964
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=256.36 Aligned_cols=309 Identities=17% Similarity=0.241 Sum_probs=215.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++..+.+|.++|++++|++++ +|++|+.|++|++||+.+++++..+.+|.. .+.++.+.+..+++.+++++.|++
T Consensus 152 ~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 152 KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEEESSSCEEEEEEETTSC
T ss_pred CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCC--ccEEEEEecCCCCCEEEEEcCCCc
Confidence 45788899999999999999887 999999999999999999998888877754 477777765556789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||++++........ ..............+......... ...+. .+. ..+. ++++
T Consensus 229 i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~----------~~~-~~~~-~l~~ 285 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGE---EHDYPLVFHTPEENPYFVGVLRGH--------MASVR----------TVS-GHGN-IVVS 285 (464)
T ss_dssp EEEEECCCCCCC---------CCSSEEESCGGGCTTEEEEECCC--------SSCEE----------EEE-EETT-EEEE
T ss_pred EEEeeCCCCcccccccc---cCCcceEeeccCCCeEEEEEccCc--------cceEE----------EEc-CCCC-EEEE
Confidence 99999987643211000 000000000000000000000000 00000 000 1112 4567
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++|++||+++++.+..+..+. ....++ .+.++ ...+++|+.||.|++||+++ +..+..
T Consensus 286 ~~~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~~---~~~~~----~~~l~sg~~dg~i~vwd~~~-~~~~~~ 347 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLYILSGHT----------DRIYST---IYDHE----RKRCISASMDTTIRIWDLEN-GELMYT 347 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EEETT----TTEEEEEETTSCEEEEETTT-TEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEecCCC----------CCEEEE---EEcCC----CCEEEEEeCCCcEEEEECCC-CcEEEE
Confidence 7789999999999998877764321 111221 23332 23689999999999999986 566788
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|..+|.++.+++ ..+++++.||+|++||++... ..... .+...+..++|+|+++++++++ ||+|++||+
T Consensus 348 ~~~h~~~v~~~~~~~--~~l~s~s~dg~v~vwd~~~~~--~~~~~---~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 348 LQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS--RKFSY---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp ECCCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCC--EEEEE---ECTTCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred EeCCCCcEEEEEEcC--CEEEEEeCCCcEEEEECCCCc--eeeee---cCCCCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 899999999999984 578999999999999997543 22211 2344577889999999999988 999999999
Q ss_pred cCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 328 RKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 328 ~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+++.+.. +..|...|.+++|+ ++.++++++.|+.+.+|-+
T Consensus 420 ~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 420 RSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99998875 66788999999997 4456666777887766643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=277.27 Aligned_cols=346 Identities=11% Similarity=0.105 Sum_probs=209.3
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
..|..+|++|+|+| |++|+|++.|++|+|||+.+++.+..+. |. ..+.++++++ +++++++|+.||+|++||++
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~--~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP--GKITSIDTDA--SLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CS--SCEEEEECCT--TCSEEEEEETTSCEEEEETT
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CC--CCEEEEEECC--CCCEEEEEcCCCcEEEEECC
Confidence 46899999999999 8899999999999999999988877664 32 3578888887 67899999999999999998
Q ss_pred CCCCCCCCceee----------eecceeeeeeeeeccccccccccCCCCc-ccccccCceeecC-CC-------------
Q 017296 95 NGGLSSNPSLTI----------KTNSYHFCKLSLVKEPYANAKQANEPKD-CYEREVGETVDTD-SL------------- 149 (374)
Q Consensus 95 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~------------- 149 (374)
++++. ...+ +.+......+.+................ .++...+...... ..
T Consensus 129 ~~~~~---~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 129 RDQLS---SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp TTEEE---EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCC
T ss_pred CCccc---cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccc
Confidence 76421 0000 0000001111111000000000000000 1111111110000 00
Q ss_pred ---CCCC----CCCCCCCCceEEEcccCCCeEEEEecCCCceeEE--ec---cCc------------c--CCCCCc----
Q 017296 150 ---CDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR--LH---QNS------------C--GGSPNF---- 199 (374)
Q Consensus 150 ---~~~~----~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~--~~---~~~------------~--~~~~~~---- 199 (374)
.+.. ..+.++ +. ++++++.|++|++||+++++.+.. +. .+. . .....+
T Consensus 206 ~~~~h~~~V~~v~fspd-g~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~ 283 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPN-SL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283 (902)
T ss_dssp TTSCBCCCEEEEEECTT-SS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS
T ss_pred cccccCCCeEEEEEcCC-CC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC
Confidence 0000 112223 23 466778899999999999876542 21 000 0 000001
Q ss_pred CCCCCcc-------------eeEEEe----------------------------------------eecCCC------CC
Q 017296 200 SSKGRGM-------------CMAVQA----------------------------------------YLPSKS------QG 220 (374)
Q Consensus 200 ~~~~~~~-------------~~~~~~----------------------------------------~~~~~~------~~ 220 (374)
.+....+ ++.... +.+..+ .+
T Consensus 284 ~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d 363 (902)
T 2oaj_A 284 NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHN 363 (902)
T ss_dssp STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBS
T ss_pred CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCC
Confidence 0000000 000000 000000 11
Q ss_pred ceEEEEEecCCcEEEEeccCCCCcee------eeecCccCeEE----------------------------------EEE
Q 017296 221 FVNVLAGYEDGSILVWDIRNPGIPLT------AMKVHLEPVLC----------------------------------LSI 260 (374)
Q Consensus 221 ~~~~~~gs~dg~i~iwdl~~~~~~~~------~~~~h~~~v~~----------------------------------~~~ 260 (374)
...+++++.||+|++||+.+...... .+..|..+|++ ++|
T Consensus 364 ~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~ 443 (902)
T 2oaj_A 364 PGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLP 443 (902)
T ss_dssp CSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCC
T ss_pred ceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccc
Confidence 12577888999999999854211111 12233344444 445
Q ss_pred ecCCCceEEEecCCeEEEEEcCCCCCe--EEEEEeee-----cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC---
Q 017296 261 DESCNGGISGGADQKIVLYNLDHSTGS--CVIKKEIN-----LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG--- 330 (374)
Q Consensus 261 ~~~~~~~~s~s~D~~i~lwd~~~~~~~--~~~~~~~~-----~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~--- 330 (374)
+|++..+++|+.|++|++||+...... ..+...+. .|...|.+++|+||+++||+|+.||+|+|||+.++
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 567778999999999999999754211 11111111 56678999999999999999999999999999765
Q ss_pred ------------------------------------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 331 ------------------------------------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 331 ------------------------------------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+++.++.+|.+.|++|+|+||| +||+|+.|++|+|||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 2467888999999999999999 999999999999999
Q ss_pred CCCC
Q 017296 369 LYPP 372 (374)
Q Consensus 369 ~~~~ 372 (374)
+..+
T Consensus 603 ~~~~ 606 (902)
T 2oaj_A 603 RRGP 606 (902)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=270.52 Aligned_cols=340 Identities=15% Similarity=0.161 Sum_probs=216.1
Q ss_pred CCCeEEeecCCC---ceeEEEEeCC-CCEEEEecCCCcEEEEeCcccceeeee-e---eeeceeeeEEeccCCcccccee
Q 017296 8 PDPVAVLRGHRA---SVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSS-W---VHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 8 ~~~~~~l~gH~~---~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~l 79 (374)
.+++..+.+|.. .|++++|+|+ +++|++++.|+.|++||+.+++.+..+ . .|. ..+.++.++ +++.+
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~---~~~~l 267 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ--GGIFALSWL---DSQKF 267 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC--SCEEEEEES---SSSEE
T ss_pred cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC--CceEEEEEc---CCCEE
Confidence 456788999999 9999999999 999999999999999999998887776 3 454 347777776 45799
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeec----ceeeeeeeeeccccccccccCCCCcccccccCce------------
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTN----SYHFCKLSLVKEPYANAKQANEPKDCYEREVGET------------ 143 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 143 (374)
++++.|++|++||+.+++... ..... ......+...................+....+..
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQ----KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGIT 343 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEE----EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEE
T ss_pred EEEcCCCcEEEEECCCCcEEE----EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEE
Confidence 999999999999998764311 11100 0000000000000000000000000000000000
Q ss_pred ---------------eecCC-----CCCCCC--CCCCCCCceEEEcccCCCeEEEEecCCCceeE---Eec--cCc----
Q 017296 144 ---------------VDTDS-----LCDSKD--DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT---RLH--QNS---- 192 (374)
Q Consensus 144 ---------------~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~---~~~--~~~---- 192 (374)
+.... ..+... ........ .+++++.|+.+++||+.+++... .+. ...
T Consensus 344 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~ 422 (615)
T 1pgu_A 344 ALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 422 (615)
T ss_dssp EEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred EEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEE
Confidence 00000 000000 00001112 23455566777777765432100 000 000
Q ss_pred --c----------CCCC--CcCCCCCcceeEEEeeecCCCCCceEEEEEec-CCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 193 --C----------GGSP--NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 193 --~----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
. .... .+.......++ .+. ...+++++. ||.|++||+.........+..|..+|.+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~ 493 (615)
T 1pgu_A 423 LTNDDDLLILQSFTGDIIKSVRLNSPGSAV---SLS------QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 493 (615)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCEEEE---EEC------SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred EeCCCceEEEeccCCceeeecccCCCceEE---EEc------CCEEEEeecCCCeEEEEECCCccccccccCCccCceEE
Confidence 0 0000 00000000010 111 226888999 9999999997532111566789999999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCeEEEEECC----------CCCEEEEEeCCCeEEEEE
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRP----------DSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v~~~~~sp----------~~~~l~s~~~dg~v~iwd 326 (374)
++|+|++..+++++.|+.|++||++.. ... ..+.. |...+.+++|+| ++++|++++.||+|++||
T Consensus 494 ~~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~--~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 494 ISISPSETYIAAGDVMGKILLYDLQSR--EVK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTT--EEE--ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEEEcCCCCeEEEeeCCCC--cce--eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 999999999999999999999999643 222 23333 777899999999 999999999999999999
Q ss_pred ccCC-eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 327 YRKG-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 327 ~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.++ +.+..+.+|...|.+++|+|+++ |++++.|++|++|++..
T Consensus 570 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 570 VKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9987 78888999999999999999999 99999999999999864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=280.02 Aligned_cols=345 Identities=10% Similarity=0.089 Sum_probs=213.0
Q ss_pred EeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcccceeeeeeeee----------------ceeeeEEeccCCccc
Q 017296 13 VLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIG 75 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 75 (374)
.+++|.++|++|+|+|+ +..|++|+.|++| +||+.+++++..+..|. +...+.+++|++ +
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--d 222 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--N 222 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--T
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--C
Confidence 45789999999999996 4789999999999 99999988777766551 013488899988 5
Q ss_pred cceeeeccccCeEEEEecCCCCCCCCCce---eeee-----------cceeeeeeeeec--cccc-cccccC-CCC----
Q 017296 76 LNKVISQGRDGTVKCWDIENGGLSSNPSL---TIKT-----------NSYHFCKLSLVK--EPYA-NAKQAN-EPK---- 133 (374)
Q Consensus 76 ~~~l~s~~~D~~vrvwd~~~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~--~~~~-~~~~~~-~~~---- 133 (374)
+++|++++.|++|++||+++++......+ ..+. ....+..+.+.. .+.. .....+ ...
T Consensus 223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN 302 (902)
T ss_dssp SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence 78999999999999999988753210000 0000 000011111100 0100 000000 000
Q ss_pred -cccccccC--------------------ceeecCCCCCCCC--CC------CC-----CCCceEEEcccCCCeEEEEec
Q 017296 134 -DCYEREVG--------------------ETVDTDSLCDSKD--DV------PA-----EGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 134 -~~~~~~~~--------------------~~~~~~~~~~~~~--~~------~~-----~~~~~~~~~~~~d~~i~vWd~ 179 (374)
....+..+ ............. ++ .+ .++.. +++++.|++|++||+
T Consensus 303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~-l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL-ILLILGNGEIETMLY 381 (902)
T ss_dssp CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE-EEEEETTSCEEEEET
T ss_pred ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee-EEEEcCCCcEEEEEC
Confidence 00000000 0000000000000 00 00 11223 344456899999999
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEE-------------------------------EeeecCCCCCceEEEEEe
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAV-------------------------------QAYLPSKSQGFVNVLAGY 228 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~gs 228 (374)
.++............ ...+. ....+++. ..| ++....+++|+
T Consensus 382 ~~g~~~~~~~~~~~~-l~~~~--~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~----spdg~~laSgs 454 (902)
T 2oaj_A 382 PSGIFTDKASLFPQN-LSWLR--PLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLP----AEYGTAFITGH 454 (902)
T ss_dssp TTCCEECCGGGSCGG-GTTBT--TBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCC----CSEEEEEEEEE
T ss_pred CCCCcccccccCCCc-ccccC--CCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccc----cccCcEEEEec
Confidence 877543221000000 00000 00000000 011 12334789999
Q ss_pred cCCcEEEEeccCCCCc---eee--ee-----cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC----------e-
Q 017296 229 EDGSILVWDIRNPGIP---LTA--MK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG----------S- 287 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~---~~~--~~-----~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~----------~- 287 (374)
.||+|++||+...... ... +. +|...|.+++|+|++..+|+|+.||+|+|||++.... .
T Consensus 455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~ 534 (902)
T 2oaj_A 455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 534 (902)
T ss_dssp TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------------
T ss_pred CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccc
Confidence 9999999999754211 011 11 7889999999999999999999999999999964310 0
Q ss_pred ------------------------------EEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE--E
Q 017296 288 ------------------------------CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--I 335 (374)
Q Consensus 288 ------------------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~--~ 335 (374)
......+..|...|++++||||| +||+|+.|++|+|||++++..+. .
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~ 613 (902)
T 2oaj_A 535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMEN 613 (902)
T ss_dssp ---CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEee
Confidence 01123455678899999999999 99999999999999998877654 2
Q ss_pred ---ec-ccCCceEEEEEe-----CCC---CEEEEEeCCCcEEEecC
Q 017296 336 ---LK-YHHATCNAVSFS-----SDC---KLMASASEDSTVALWEL 369 (374)
Q Consensus 336 ---~~-~h~~~v~~v~~s-----p~~---~~las~s~D~~v~~W~~ 369 (374)
+. +|.+.|++|+|+ ||| ++|++|+.|++|++|++
T Consensus 614 ~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 614 IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 32 899999999999 886 89999999999999998
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=260.80 Aligned_cols=304 Identities=14% Similarity=0.204 Sum_probs=210.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeece-eeeEEeccCCccc-cceeeecccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIG-LNKVISQGRD 85 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~s~~~D 85 (374)
+++..+.+|...|++++|+|+++ +|++++.|+.|++||..+++.+..+..|... ..+.++++++ + ++++++++.|
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d 228 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSD 228 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETT
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCC
Confidence 56788899999999999999998 8999999999999999998888877766530 0478888887 5 6899999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeec-ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
++|++||+.+++... .+... ..|.. .+... .+. +.. +
T Consensus 229 g~i~vwd~~~~~~~~----~~~~~~~~~~~---------------------------~v~~~--------~~~--~~~-~ 266 (615)
T 1pgu_A 229 RKISCFDGKSGEFLK----YIEDDQEPVQG---------------------------GIFAL--------SWL--DSQ-K 266 (615)
T ss_dssp CCEEEEETTTCCEEE----ECCBTTBCCCS---------------------------CEEEE--------EES--SSS-E
T ss_pred CeEEEEECCCCCEeE----EecccccccCC---------------------------ceEEE--------EEc--CCC-E
Confidence 999999998764211 00000 00000 00000 011 112 4
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++++.|+.|++||+++++.+..+..... ........+ .+ + ....+++++.||.|++||++. ..+
T Consensus 267 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~-~~-~----~~~~l~~~~~~g~i~~~d~~~-~~~ 331 (615)
T 1pgu_A 267 FATVGADATIRVWDVTTSKCVQKWTLDKQ--------QLGNQQVGV-VA-T----GNGRIISLSLDGTLNFYELGH-DEV 331 (615)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTT--------CGGGCEEEE-EE-E----ETTEEEEEETTSCEEEEETTE-EEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCC--------cccCceeEE-Ee-C----CCCeEEEEECCCCEEEEECCC-CcE
Confidence 56677789999999999987776653210 000111111 11 1 112577788888888888764 334
Q ss_pred eeeeecCccCeEEEEEecC---------------------------------CCceEEEecCCeEEEEEcCCC-------
Q 017296 245 LTAMKVHLEPVLCLSIDES---------------------------------CNGGISGGADQKIVLYNLDHS------- 284 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~---------------------------------~~~~~s~s~D~~i~lwd~~~~------- 284 (374)
+..+.+|..+|.++.+ ++ +..+++++.|+.+++||+...
T Consensus 332 ~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 332 LKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 4455555555544444 22 445666666666666665321
Q ss_pred -------------------------------------------------------CCeEE--------EE-EeeecCCCC
Q 017296 285 -------------------------------------------------------TGSCV--------IK-KEINLERPG 300 (374)
Q Consensus 285 -------------------------------------------------------~~~~~--------~~-~~~~~~~~~ 300 (374)
.+... .. .....|...
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 490 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK 490 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc
Confidence 00000 00 223345677
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc-cCCceEEEEEeC----------CCCEEEEEeCCCcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSS----------DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~sp----------~~~~las~s~D~~v~~W~~ 369 (374)
+.+++|+|++++|++++.||.|++||+.+++.+..+.+ |...|.+++|+| ++++||+++.|++|++|++
T Consensus 491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 99999999999999999999999999999999988888 999999999999 9999999999999999999
Q ss_pred CCC
Q 017296 370 YPP 372 (374)
Q Consensus 370 ~~~ 372 (374)
..+
T Consensus 571 ~~~ 573 (615)
T 1pgu_A 571 KRP 573 (615)
T ss_dssp SCT
T ss_pred CCC
Confidence 754
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=265.24 Aligned_cols=266 Identities=12% Similarity=0.112 Sum_probs=184.8
Q ss_pred CCCeEEeecCCCceeEEEEeCCC---------CEEEE-------------------ecCCCcEEEEeCccccee----ee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTK---------PILFA-------------------GTTGGELRIWDTVQHRTV----SS 55 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~---------~~l~s-------------------~s~D~~v~vWd~~~~~~~----~~ 55 (374)
.+...++. +.+.|.+|+|+|++ .+|++ ++.|++|+|||+.+++.. ..
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~ 202 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT 202 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE
Confidence 34444554 78999999999876 45554 668899999998776532 22
Q ss_pred eeeeeceeeeEEeccCCc----cccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 56 SWVHSAAHGIVSVATGPS----IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
+..|. ..+..++|++. +++..|+|++.|++||+||+.++..... ... . .
T Consensus 203 l~~~~--~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~--~~~----------~-~------------ 255 (524)
T 2j04_B 203 IVHSF--GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH--VFK----------M-C------------ 255 (524)
T ss_dssp EEECC--CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS--EEE----------C-C------------
T ss_pred EEecC--CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc--cce----------e-e------------
Confidence 33332 34778888874 2356899999999999999976532100 000 0 0
Q ss_pred CCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEE
Q 017296 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (374)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (374)
..+. ....+. .....+ .
T Consensus 256 ---------------------------~~p~-~~l~~h--------------------------------~~~v~s---v 272 (524)
T 2j04_B 256 ---------------------------EKPS-LTLSLA--------------------------------DSLITT---F 272 (524)
T ss_dssp ---------------------------CSCS-EEECCT--------------------------------TTCEEE---E
T ss_pred ---------------------------cCce-EEEEcC--------------------------------CCCEEE---E
Confidence 0000 000000 000011 1
Q ss_pred eeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE--EEecCC-CceEEEecCCeEEEEEcCCCCCeE
Q 017296 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL--SIDESC-NGGISGGADQKIVLYNLDHSTGSC 288 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~ 288 (374)
.+.+. ..|++|+.||+|++||++.+..+...+.+|..+|.++ .+.+++ ..++|+|.|++|+|||++......
T Consensus 273 ~~s~~-----~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~ 347 (524)
T 2j04_B 273 DFLSP-----TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK 347 (524)
T ss_dssp EESSS-----SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred EecCC-----CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence 12221 1589999999999999986555666788999999999 457776 778999999999999996432221
Q ss_pred EEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 289 VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 289 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+... .....+.+++|+|+++.+++++.|++|++||+++++.+.++.+|.+.|++|+|+|+|++|||||.|++|++|+
T Consensus 348 ~~~~~--~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 348 TTVSR--FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp EEEEE--CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ccccc--cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 22111 1112478899999999999999999999999999988888889999999999999999999999999999999
Q ss_pred CCC
Q 017296 369 LYP 371 (374)
Q Consensus 369 ~~~ 371 (374)
...
T Consensus 426 ~~~ 428 (524)
T 2j04_B 426 AAR 428 (524)
T ss_dssp SCS
T ss_pred chH
Confidence 743
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=240.79 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=181.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.++..+++|...|++++|+|++++|+||+.|++|++||+.+++.+..+.+|.. .+.++++++ +++.+++|+.|++|
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~--~v~~~~~~~--~~~~l~s~s~D~~i 131 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS--DVMSVDIDK--KASMIISGSRDKTI 131 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECT--TSCEEEEEETTSCE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC--cEEEEEEcC--CCCEEEEEeCCCeE
Confidence 35778999999999999999999999999999999999999998888887764 488888877 56799999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||++.... ..+..+......+ ...+.. .......+++++
T Consensus 132 ~vwd~~~~~~-----~~~~~h~~~v~~~--------------------~~~~~~--------------~~~~~~~~l~s~ 172 (319)
T 3frx_A 132 KVWTIKGQCL-----ATLLGHNDWVSQV--------------------RVVPNE--------------KADDDSVTIISA 172 (319)
T ss_dssp EEEETTSCEE-----EEECCCSSCEEEE--------------------EECCC--------------------CCEEEEE
T ss_pred EEEECCCCeE-----EEEeccCCcEEEE--------------------EEccCC--------------CCCCCccEEEEE
Confidence 9999964210 0000000000000 000000 000112356778
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|++|++||+++.+....+..+. ....+ ..+.++ ...+++|+.||+|++||++. ...+..+
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~----------~~v~~---~~~sp~----g~~l~s~~~dg~i~iwd~~~-~~~~~~~ 234 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHN----------SNINT---LTASPD----GTLIASAGKDGEIMLWNLAA-KKAMYTL 234 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCC----------SCEEE---EEECTT----SSEEEEEETTCEEEEEETTT-TEEEEEE
T ss_pred eCCCEEEEEECCcchhheeecCCC----------CcEEE---EEEcCC----CCEEEEEeCCCeEEEEECCC-CcEEEEe
Confidence 889999999999987766654321 11111 124332 23699999999999999986 4455556
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee----ecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI----NLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
. +..+|.+++|+|++..+++++ ++.+++|+++.......+.... ..+...+.+++|+||+++|++|+.||+|++
T Consensus 235 ~-~~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~v 312 (319)
T 3frx_A 235 S-AQDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312 (319)
T ss_dssp E-CCSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred c-CCCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEE
Confidence 5 457899999999988776665 5569999986432111111111 123456889999999999999999999999
Q ss_pred EEccCC
Q 017296 325 YNYRKG 330 (374)
Q Consensus 325 wd~~~~ 330 (374)
||+.++
T Consensus 313 Wd~~t~ 318 (319)
T 3frx_A 313 WQVMTA 318 (319)
T ss_dssp EEEEEC
T ss_pred EEEeec
Confidence 998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-31 Score=265.33 Aligned_cols=294 Identities=16% Similarity=0.196 Sum_probs=220.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+...++.+|.+.|++++|+|++.+|++|+.||.|+|||..+++.+..+.+|. ..+.+++|++ ++++|++++.|++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTE--TPVRAGKFIA--RKNWIIVGSDDFRI 79 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEEEG--GGTEEEEEETTSEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCC--CcEEEEEEeC--CCCEEEEEeCCCeE
Confidence 5678999999999999999999999999999999999999998888877765 3588888887 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++... .+..+..... +.. +.+++ . .++++
T Consensus 80 ~vw~~~~~~~~~----~~~~~~~~v~--------------------~~~------------------~s~~~-~-~l~~~ 115 (814)
T 3mkq_A 80 RVFNYNTGEKVV----DFEAHPDYIR--------------------SIA------------------VHPTK-P-YVLSG 115 (814)
T ss_dssp EEEETTTCCEEE----EEECCSSCEE--------------------EEE------------------ECSSS-S-EEEEE
T ss_pred EEEECCCCcEEE----EEecCCCCEE--------------------EEE------------------EeCCC-C-EEEEE
Confidence 999998874210 1100000000 000 11122 2 35567
Q ss_pred cCCCeEEEEecCCCc-eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 169 EQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
+.|++|++||++++. ....+..+ .....++ .+.+. +...+++++.||.|++||++........
T Consensus 116 ~~dg~i~vw~~~~~~~~~~~~~~~----------~~~v~~~---~~~p~---~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 179 (814)
T 3mkq_A 116 SDDLTVKLWNWENNWALEQTFEGH----------EHFVMCV---AFNPK---DPSTFASGCLDRTVKVWSLGQSTPNFTL 179 (814)
T ss_dssp ETTSEEEEEEGGGTSEEEEEEECC----------SSCEEEE---EEETT---EEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred cCCCEEEEEECCCCceEEEEEcCC----------CCcEEEE---EEEcC---CCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence 788999999999874 33343321 1111222 23331 2336899999999999999764433333
Q ss_pred eecCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 248 MKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
...+..++.++.+++ ++..+++++.|++|++||++.. .. ...+..|...+.+++|+|+++++++++.||+|++|
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT--EE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC--cE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 334458999999988 8889999999999999998653 22 23445677789999999999999999999999999
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCC
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYP 371 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~ 371 (374)
|+.+++.+..+..|...+.+++|+|+++ ++++++ |+.+.+|++..
T Consensus 256 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 302 (814)
T 3mkq_A 256 NSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (814)
T ss_dssp ETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSC
T ss_pred ECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCC
Confidence 9999999999999999999999999997 455555 66788888753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=254.50 Aligned_cols=283 Identities=13% Similarity=0.119 Sum_probs=198.6
Q ss_pred CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCC
Q 017296 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (374)
Q Consensus 19 ~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~ 98 (374)
..+++++|+|++++|++++.|+.|++||..+++....+..|. ......+++ ++++|++++.|++|++||+.+++.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRAD---YTAVDTAKL--QMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCC---EEEEEEECS--SSCEEEEEETTSCEEEECTTSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCC---ceEEEEEec--CCCEEEEEECCCCEEEEeCCCcce
Confidence 345589999999999999999999999998877655544431 122334454 568999999999999999986531
Q ss_pred CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEe
Q 017296 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd 178 (374)
. .....|... ..+.. +.++ .. ++++++.|++|++||
T Consensus 132 ~-------~~~~~h~~~-----------------v~~~~------------------~~~~-~~-~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 132 R-------EIDQAHVSE-----------------ITKLK------------------FFPS-GE-ALISSSQDMQLKIWS 167 (420)
T ss_dssp E-------EETTSSSSC-----------------EEEEE------------------ECTT-SS-EEEEEETTSEEEEEE
T ss_pred e-------eecccccCc-----------------cEEEE------------------ECCC-CC-EEEEEeCCCeEEEEe
Confidence 1 000000000 00000 1111 22 456777899999999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec---CccCe
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV---HLEPV 255 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~---h~~~v 255 (374)
+++++.+..+..+. ....++ .+.++ ...+++++.||+|++||+++. .....+.. |...+
T Consensus 168 ~~~~~~~~~~~~h~----------~~v~~~---~~~~~----~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 168 VKDGSNPRTLIGHR----------ATVTDI---AIIDR----GRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGV 229 (420)
T ss_dssp TTTCCCCEEEECCS----------SCEEEE---EEETT----TTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCE
T ss_pred CCCCcCceEEcCCC----------CcEEEE---EEcCC----CCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCc
Confidence 99988776664321 111222 24432 236889999999999999863 44555553 44455
Q ss_pred EEEE---------------------EecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EE
Q 017296 256 LCLS---------------------IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IA 313 (374)
Q Consensus 256 ~~~~---------------------~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 313 (374)
.++. |++++..+++++.||.|++||++... ... .....+...+.+++|+|+++ +|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--QTI-QLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--EEE-EECCTTSSCEEEEEECSSCTTEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--eeE-EcccccCCCceeEEEeCCCCCEE
Confidence 5554 46777889999999999999997543 221 22234567899999999999 99
Q ss_pred EEEeCCCeEEEEEccCCeE-EEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 314 ATAGWDRRVRIYNYRKGSA-LAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~~~-~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++|+.||+|++||+.+++. +..+.. |...|.++.| |++++|++++.|++|++|++..+
T Consensus 307 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 9999999999999988754 667776 5677887755 68899999999999999998653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=241.64 Aligned_cols=284 Identities=15% Similarity=0.200 Sum_probs=184.7
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eecccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRD 85 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D 85 (374)
..+++..+.+|..+|++|+|+|+|++|++|+.|+ ++|||..+++.+..... . ++..+.+.+. .+.+ ++++.|
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~--~~~~~~~~~~--~~~~~~~~~~d 80 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--R--HLSKVRMLHR--TNYVAFVTGVK 80 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--S--CCCEEEECTT--SSEEEEECSST
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--C--CeEEEEEcCC--CCEEEEEECCc
Confidence 3456778899999999999999999999998775 78999887765443221 1 2333344432 2444 678889
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+.+++... .+. .......+ .. .+..++
T Consensus 81 ~~v~iWd~~~~~~~~----~~~-~~~~v~~v--------------------~~---------------------~~~~~~ 114 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVS----RIK-VDAPVKDL--------------------FL---------------------SREFIV 114 (355)
T ss_dssp TEEEEEETTTTEEEE----EEE-CSSCEEEE--------------------EE---------------------CSSEEE
T ss_pred cEEEEEECCCCcEEE----EEE-CCCceEEE--------------------EE---------------------cCCEEE
Confidence 999999998764210 000 00000000 00 011223
Q ss_pred EcccCCCeEEEEecCCC-ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE--EecCCcEEEEeccCCC
Q 017296 166 VAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA--GYEDGSILVWDIRNPG 242 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gs~dg~i~iwdl~~~~ 242 (374)
++ .++.|++||+.++ +.+..+.. ...+..+.+ . .++. |+.||.|++||++...
T Consensus 115 ~~--~~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~s~----~--~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 115 VS--YGDVISVFKFGNPWKRITDDIR----------------FGGVCEFSN----G--LLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp EE--ETTEEEEEESSTTCCBSSCCEE----------------EEEEEEEET----T--EEEEEESSCTTCEEEEECCC--
T ss_pred EE--EcCEEEEEECCCCceeeEEecc----------------CCceEEEEc----c--EEEEeCCCcCcEEEEEECCCCC
Confidence 33 2578999999987 44333221 011112222 1 2333 7899999999997532
Q ss_pred --------------Cc-eeeeecCccCeEEEEEecCCCceEEEecCCe-EEEEEcCCCCCeEEEEEeee-c-CCCCeEEE
Q 017296 243 --------------IP-LTAMKVHLEPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCVIKKEIN-L-ERPGISGT 304 (374)
Q Consensus 243 --------------~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~-i~lwd~~~~~~~~~~~~~~~-~-~~~~v~~~ 304 (374)
.+ +..+.+|..+|.+++|+|++..+++++.|++ |++||++... +. ..+. . |...|.++
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~--~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LV--REFRRGLDRADVVDM 246 (355)
T ss_dssp ----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EE--EEEECTTCCSCEEEE
T ss_pred ccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EE--EEEEcCCCCCcEEEE
Confidence 12 6678899999999999999999999999998 9999997543 32 2333 2 67789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccCCeE--EEEec---------------------ccCCceEEEEEeCCCCEEEEEeCC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILK---------------------YHHATCNAVSFSSDCKLMASASED 361 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---------------------~h~~~v~~v~~sp~~~~las~s~D 361 (374)
+|+|++++|++++.|++|++||+..+.. ...+. .+......++|+|||++|++++.|
T Consensus 247 ~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~d 326 (355)
T 3vu4_A 247 KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHT 326 (355)
T ss_dssp EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTT
T ss_pred EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCC
Confidence 9999999999999999999999976431 11111 111233668999999999999999
Q ss_pred CcEEEecCCC
Q 017296 362 STVALWELYP 371 (374)
Q Consensus 362 ~~v~~W~~~~ 371 (374)
|.+++|++.+
T Consensus 327 g~~~~~~~~~ 336 (355)
T 3vu4_A 327 RMIETFKVVF 336 (355)
T ss_dssp TEEEEEEEEE
T ss_pred CeEEEEEEEc
Confidence 9999998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=286.94 Aligned_cols=352 Identities=15% Similarity=0.214 Sum_probs=234.2
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++..+.+|.+.|++++|+|++++|++++.|++|+|||+.+++.+..+.+|. ..+.+++|++..+...+++|+.|++
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS--EQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEEEEEecCCCceEEEEEeCCCe
Confidence 46788999999999999999999999999999999999999999888887775 3588888888656678999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeecccc---------------------ccccccC--------------CC
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY---------------------ANAKQAN--------------EP 132 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~--------------~~ 132 (374)
|++||+.++++.. .+..+......+.+..... ....... ..
T Consensus 725 v~vwd~~~~~~~~----~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 725 LKLWDLNQKECRN----TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp EEEEETTSSSEEE----EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred EEEEECCCcchhh----eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 9999998875321 0000000000000000000 0000000 00
Q ss_pred CcccccccC--------------------ceeecCCCCCCC----CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEe
Q 017296 133 KDCYEREVG--------------------ETVDTDSLCDSK----DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (374)
Q Consensus 133 ~~~~~~~~~--------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~ 188 (374)
..+..+.+. .........+.. ..+ .++.. ++++++.|+.|++||+.+++.+..+
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~-sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF-SPYDH-LAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE-CSSTT-EEEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE-cCCCC-EEEEEeCCCeEEEEEcCCCceeeec
Confidence 000000000 000000000000 011 12223 4556677899999999998776665
Q ss_pred ccCccC-CCCCcCCCCCccee-----------------------------------------------------------
Q 017296 189 HQNSCG-GSPNFSSKGRGMCM----------------------------------------------------------- 208 (374)
Q Consensus 189 ~~~~~~-~~~~~~~~~~~~~~----------------------------------------------------------- 208 (374)
..+... ....+++.+..+..
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 433210 11111111110000
Q ss_pred ------EEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcC
Q 017296 209 ------AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 209 ------~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~ 282 (374)
....+. +....+++|+.||.|++||+.. ......+.+|..+|.++.|++++..+++++.|++|++||+.
T Consensus 959 ~~~~~i~~~~~s----p~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 959 LPEAQVSCCCLS----PHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp ECCSCEEEEEEC----TTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred cccCcEEEEEEc----CCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 000111 1223577888888888888875 44566778899999999999999999999999999999986
Q ss_pred CCCCe--------E----------E------------------EEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 283 HSTGS--------C----------V------------------IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 283 ~~~~~--------~----------~------------------~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
..... . . ....+..|...+.+++|+|+++++++++.||+|++||
T Consensus 1034 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1034 TGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp TTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEEC
T ss_pred CCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 42100 0 0 0012334666788999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.+++.+..+.+|...|.+++|+|||++||+++.|++|++|++..+
T Consensus 1114 ~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp SSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred CCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999998654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=235.39 Aligned_cols=250 Identities=20% Similarity=0.312 Sum_probs=182.7
Q ss_pred eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
...++.+|.. .|.+++|++ ++++|++++.|++|++||+.+++.. ..+........
T Consensus 47 ~~~~l~gH~~--~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~~~~~----~~~~~~~~~v~----------------- 101 (340)
T 1got_B 47 TRRTLRGHLA--KIYAMHWGT--DSRLLLSASQDGKLIIWDSYTTNKV----HAIPLRSSWVM----------------- 101 (340)
T ss_dssp EEEEECCCSS--CEEEEEECT--TSSEEEEEETTTEEEEEETTTCCEE----EEEECSSSCEE-----------------
T ss_pred hheeecCCCC--ceEEEEECC--CCCEEEEEeCCCcEEEEECCCCCcc----eEeecCCccEE-----------------
Confidence 3455666753 588888887 6789999999999999999876321 01100000000
Q ss_pred CCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCce----eEEeccCccCCCCCcCCCCCcce
Q 017296 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER----CTRLHQNSCGGSPNFSSKGRGMC 207 (374)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 207 (374)
+. .+.+ +.. ++++++.|+.+++||+.+++. ...+..+ .....+
T Consensus 102 ---~~------------------~~s~-~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h----------~~~v~~ 148 (340)
T 1got_B 102 ---TC------------------AYAP-SGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGH----------TGYLSC 148 (340)
T ss_dssp ---EE------------------EECT-TSS-EEEEEETTCEEEEEETTTCSBSCEEEEEEECC----------SSCEEE
T ss_pred ---EE------------------EECC-CCC-EEEEEeCCCeEEEEECccCCCcceeEEEecCC----------CccEEE
Confidence 00 0111 123 456677899999999987642 2222211 111111
Q ss_pred eEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe
Q 017296 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS 287 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~ 287 (374)
+ .+.++ + .+++++.|++|++||+++ ......+.+|..+|.+++|+|++..+++|+.|++|++||++...
T Consensus 149 ~---~~~~~---~--~l~s~s~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-- 217 (340)
T 1got_B 149 C---RFLDD---N--QIVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-- 217 (340)
T ss_dssp E---EEEET---T--EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--
T ss_pred E---EECCC---C--cEEEEECCCcEEEEECCC-CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--
Confidence 1 23322 2 488999999999999976 45677888999999999999999999999999999999997543
Q ss_pred EEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 288 CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 288 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
+ ...+..|...|.+++|+|++++|++|+.||+|++||+++++.+..+.. +...|.+++|+|+|++|++|+.|++|+
T Consensus 218 ~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 218 C--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp E--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred e--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence 2 234556778899999999999999999999999999999888776652 235799999999999999999999999
Q ss_pred EecCCCC
Q 017296 366 LWELYPP 372 (374)
Q Consensus 366 ~W~~~~~ 372 (374)
+||+..+
T Consensus 296 vwd~~~~ 302 (340)
T 1got_B 296 VWDALKA 302 (340)
T ss_dssp EEETTTC
T ss_pred EEEcccC
Confidence 9998543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=233.43 Aligned_cols=288 Identities=17% Similarity=0.212 Sum_probs=207.6
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
|.++|.+++|+|+|++++.+..++.+.+|+............|. ..+.++++++ +++.+++++ |++|++||+.++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~ 82 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHG--EVVCAVTISN--PTRHVYTGG-KGCVKVWDISHP 82 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCS--SCCCEEEECS--SSSEEEEEC-BSEEEEEETTST
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCC--CceEEEEEec--CCcEEEEcC-CCeEEEEECCCC
Confidence 67889999999999999999888888888765544333333454 4577888887 667888888 999999999876
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
+.... ....... .+ . ....+.. +.+ +.. ++++++.|+.|++
T Consensus 83 ~~~~~-~~~~~~~-~~----------~-------~~v~~~~------------------~~~-~~~-~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 83 GNKSP-VSQLDCL-NR----------D-------NYIRSCK------------------LLP-DGC-TLIVGGEASTLSI 123 (337)
T ss_dssp TCCSC-SEEEECS-CT----------T-------SBEEEEE------------------ECT-TSS-EEEEEESSSEEEE
T ss_pred Cceee-eeccccc-CC----------C-------CcEEEEE------------------EcC-CCC-EEEEEcCCCcEEE
Confidence 42211 0000000 00 0 0000000 111 223 3456677899999
Q ss_pred EecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 177 WDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 177 Wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
||+++++ ....+..+ .....++ .+.++ ...+++++.||.|++||+++ ......+..|..+
T Consensus 124 ~d~~~~~~~~~~~~~~~----------~~~i~~~---~~~~~----~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~ 185 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSS----------APACYAL---AISPD----SKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDG 185 (337)
T ss_dssp EECCCC--EEEEEEECS----------SSCEEEE---EECTT----SSEEEEEETTSCEEEEETTT-TEEEEEECCCSSC
T ss_pred EECCCCCcceeeecccC----------CCceEEE---EECCC----CCEEEEEeCCCcEEEEeCCC-CceeeeeecccCc
Confidence 9999876 33333221 1111111 23332 23688999999999999986 4566778889999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
+.++.+++++..+++++.|+.|++||++.. ..... .. +...+.+++|+|+++++++++.|+.|++||+.+++..
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~--~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~- 259 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREG--RQLQQ--HD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY- 259 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEE--EE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCC--ceEee--ec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-
Confidence 999999999999999999999999999754 22221 22 3457999999999999999999999999999887754
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+..|...|.+++|+|++++|++++.|+.|++|++...
T Consensus 260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 57789999999999999999999999999999998654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=245.78 Aligned_cols=282 Identities=14% Similarity=0.170 Sum_probs=169.6
Q ss_pred EEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc------cCeEEEEecCCCCC
Q 017296 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR------DGTVKCWDIENGGL 98 (374)
Q Consensus 25 ~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------D~~vrvwd~~~~~~ 98 (374)
.+.+++ ++++++.+.....|++....+ ..|. ..|.+++|++ |+++|+|++. |+++++|+..++..
T Consensus 12 d~g~~~-~~~~~~g~~~~~~w~~p~~~p----~~H~--~~V~~v~fSp--DG~~las~s~d~~~~wd~~v~~~~~~~~~~ 82 (357)
T 4g56_B 12 DLGTEN-LYFQSNGSSKGSAWGRPVTAP----ACME--VQIGAVRYRR--DGALLLAASSLSSRTWGGSIWVFKDPEGAP 82 (357)
T ss_dssp ---------------------------------CCC--SEEEEEEECS--SSCEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred CCCccc-eEEecCCCccccccCCCCCCc----cccc--CCEEEEEECC--CCCEEEEEcCCCCccccCeEEEEECCCCCc
Confidence 555555 445555578889999754322 2354 3488999988 7889999987 77899998877632
Q ss_pred CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEe
Q 017296 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd 178 (374)
................ +. .+.++ .+ ++ +++.|++|+|||
T Consensus 83 ~~~~~~~~~~~~~~V~--------------------~~------------------~~s~d-~~-~l-~~s~dg~v~lWd 121 (357)
T 4g56_B 83 NESLCTAGVQTEAGVT--------------------DV------------------AWVSE-KG-IL-VASDSGAVELWE 121 (357)
T ss_dssp CGGGCSEEEECSSCEE--------------------EE------------------EEETT-TE-EE-EEETTSCEEEC-
T ss_pred ceeEecccCCCCCCEE--------------------EE------------------EEcCC-CC-EE-EEECCCEEEEee
Confidence 1100000000000000 00 01112 22 23 455689999999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~ 258 (374)
+.+++........ ...+.....++ .|.++ ...+++|+.||+|++||+++ ...+..+++|...|.++
T Consensus 122 ~~~~~~~~~~~~~------~~~h~~~V~~v---~~spd----g~~l~sgs~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v 187 (357)
T 4g56_B 122 ILEKESLLVNKFA------KYEHDDIVKTL---SVFSD----GTQAVSGGKDFSVKVWDLSQ-KAVLKSYNAHSSEVNCV 187 (357)
T ss_dssp -------CCCCEE------ECCCSSCEEEE---EECSS----SSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEE
T ss_pred ccccceeEEEeec------cCCCCCCEEEE---EECCC----CCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEE
Confidence 9987643222100 00111122222 34432 23689999999999999986 45677889999999999
Q ss_pred EEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 259 SIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 259 ~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
+|++++. .+++++.|++|++||++..... .......+...+.+++|+|+ +.+|++|+.|++|++||+++++.+.++
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE
T ss_pred EEccCCCceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE
Confidence 9988764 5789999999999999754322 11222334556899999997 568899999999999999999999999
Q ss_pred cccCCceEEEEEeCCC-CEEEEEeCCCcEEEecCCCC
Q 017296 337 KYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 337 ~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~~~~ 372 (374)
.+|...|.+++|+|++ ++|||+|.|++|+|||+..+
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999998 58999999999999998653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=244.99 Aligned_cols=272 Identities=19% Similarity=0.277 Sum_probs=189.2
Q ss_pred CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeee
Q 017296 39 GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSL 118 (374)
Q Consensus 39 D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (374)
+..+..|+.....+..++.+|.. .|.+++|++ ++++|+||+.|++|++||+.+++.. ..++ .|.
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~--~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~~~~~----~~~~---~h~----- 108 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSG--KVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKT----HAIK---LHC----- 108 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSS--CEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEE----EEEE---CCC-----
T ss_pred cccccccccceeEEeeccccccc--EEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCccc----eEEe---cCC-----
Confidence 44566788877777788888864 488999988 5689999999999999999876311 0000 000
Q ss_pred eccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCC
Q 017296 119 VKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPN 198 (374)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~ 198 (374)
. ...+ ..+.+ ++. ++++|+.|+.+++||+.+......... ......+
T Consensus 109 -----~-------~v~~------------------~~~s~-~g~-~las~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~g 155 (380)
T 3iz6_a 109 -----P-------WVME------------------CAFAP-NGQ-SVACGGLDSACSIFNLSSQADRDGNMP-VSRVLTG 155 (380)
T ss_dssp -----T-------TCCC------------------CEECT-TSS-EEEECCSSSCCEEEECCCCSSCCCSST-TCCBCCC
T ss_pred -----C-------CEEE------------------EEECC-CCC-EEEEeeCCCcEEEEECCCCccccCCcc-ceeeccC
Confidence 0 0000 00112 223 456778899999999976431100000 0000001
Q ss_pred cCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee-----ecCccCeEEEEEec-CCCceEEEec
Q 017296 199 FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEPVLCLSIDE-SCNGGISGGA 272 (374)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~s~s~ 272 (374)
+. ....++ .+.+. ....+++|+.|++|++||+++. ..+..+ .+|...|.++.+++ ++..+++|+.
T Consensus 156 h~--~~v~~~---~~~~~---~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~ 226 (380)
T 3iz6_a 156 HK--GYASSC---QYVPD---QETRLITGSGDQTCVLWDVTTG-QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226 (380)
T ss_dssp CS--SCCCCC---BCCSS---SSSCEEEECTTSCEEEECTTTC-CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET
T ss_pred CC--cceEEE---EEecC---CCCEEEEECCCCcEEEEEcCCC-cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC
Confidence 11 111111 12222 2225899999999999999864 344444 57899999999975 6778999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCC-------ceEE
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-------TCNA 345 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~-------~v~~ 345 (374)
|++|++||++.... . ...+..|...|.+++|+|++++|++|+.||+|++||+++++.+..+..+.. .|.+
T Consensus 227 D~~v~~wd~~~~~~-~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 227 DTTVRLWDLRITSR-A--VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp TSCEEEEETTTTCC-C--CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred CCeEEEEECCCCCc-c--eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence 99999999963321 1 123456778899999999999999999999999999999999888765542 4899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 346 VSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 346 v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++|+|+|++|++|+.|+.|++||+..
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEETTT
T ss_pred EEECCCCCEEEEEECCCCEEEEECCC
Confidence 99999999999999999999999754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.96 Aligned_cols=260 Identities=18% Similarity=0.215 Sum_probs=196.8
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCc--ccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.++.||.++|++++|+|++++|++|+.||+|+|||+. +++.+..+.+|. ..|.++++++..+++.+++|+.||+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~--~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCS--SCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCc--CceEEEEecCCCCCCEEEEEeCCCeE
Confidence 46789999999999999999999999999999999987 445666666665 45888888875447899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++.. .+.. . .+
T Consensus 80 ~vwd~~~~~~~-----~~~~----------~-----------------------------------------------~~ 97 (753)
T 3jro_A 80 LIWKEENGRWS-----QIAV----------H-----------------------------------------------AV 97 (753)
T ss_dssp EEEEEETTEEE-----EEEE----------E-----------------------------------------------CC
T ss_pred EEEECCCCccc-----cccc----------c-----------------------------------------------cC
Confidence 99999765200 0000 0 00
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC-Cceee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~-~~~~~ 247 (374)
....| .+ ..+.++. ....+++|+.||.|++||++... .....
T Consensus 98 -h~~~V-------------------------------~~---v~~sp~~--~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 98 -HSASV-------------------------------NS---VQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp -CSSCE-------------------------------EE---EEECCGG--GCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred -CCCCe-------------------------------EE---EEECCCC--CCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 00000 00 0111110 01258899999999999998652 23455
Q ss_pred eecCccCeEEEEEec-------------CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC---CC
Q 017296 248 MKVHLEPVLCLSIDE-------------SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD---SK 311 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~-------------~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~ 311 (374)
+.+|..+|.++.++| ++..+++|+.||+|++||++...........+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 678999999999998 47889999999999999998765544455566778889999999999 89
Q ss_pred EEEEEeCCCeEEEEEccCCe-----EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 312 IAATAGWDRRVRIYNYRKGS-----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++++++.||+|++||+.+++ .+.....|...|.+++|+|+|++|++++.|+.|++|++..
T Consensus 221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999998764 3333456889999999999999999999999999999874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-30 Score=232.40 Aligned_cols=261 Identities=16% Similarity=0.239 Sum_probs=177.1
Q ss_pred eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..+|.+.|++|+|+|++++|++|+.|+++++||..++. ++..+.+|. ..+.+++|++ ++++|++++.|++|++|
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~--~~v~~v~~sp--~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEVKSVAWAP--SGNLLATCSRDKSVWVW 132 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS--SCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC--CCceEEEEeC--CCCEEEEEECCCeEEEE
Confidence 47999999999999999999999999999999987653 456666665 3588889987 67899999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|+.++.. ...+.....|... ..+.. +.+. .. ++++++.|
T Consensus 133 d~~~~~~----~~~~~~~~~h~~~-----------------v~~~~------------------~~p~-~~-~l~s~s~d 171 (345)
T 3fm0_A 133 EVDEEDE----YECVSVLNSHTQD-----------------VKHVV------------------WHPS-QE-LLASASYD 171 (345)
T ss_dssp EECTTSC----EEEEEEECCCCSC-----------------EEEEE------------------ECSS-SS-CEEEEETT
T ss_pred ECCCCCC----eEEEEEecCcCCC-----------------eEEEE------------------ECCC-CC-EEEEEeCC
Confidence 9976521 0011100000000 00000 1111 22 35677789
Q ss_pred CeEEEEecCCCce--eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC------
Q 017296 172 SEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------ 243 (374)
Q Consensus 172 ~~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~------ 243 (374)
++|++||+++++. ...+..+ . ....+ ..|.++ + ..|++|+.||+|++||+..+..
T Consensus 172 ~~i~~w~~~~~~~~~~~~~~~h--------~--~~v~~---l~~sp~---g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCCATLEGH--------E--STVWS---LAFDPS---G-QRLASCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECCC--------S--SCEEE---EEECTT---S-SEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred CcEEEEEecCCCEEEEEEecCC--------C--CceEE---EEECCC---C-CEEEEEeCCCeEEEeccccCCCCcccee
Confidence 9999999988753 2333321 1 11111 134432 2 3689999999999999754321
Q ss_pred --------ceeeeec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC----eEEEE-EeeecCCCCeEEEEECCC
Q 017296 244 --------PLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG----SCVIK-KEINLERPGISGTSIRPD 309 (374)
Q Consensus 244 --------~~~~~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~----~~~~~-~~~~~~~~~v~~~~~sp~ 309 (374)
.+..+.+ |...|.+++|++++..+++++.|+.|++|+.+.... ...+. .....|...|.+++|+|+
T Consensus 235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC
Confidence 1223333 888999999999999999999999999999864321 11111 122457788999999998
Q ss_pred C-CEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 310 S-KIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 310 ~-~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
+ .+|||++.||+|++|++.+++.+...
T Consensus 315 ~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 315 EPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp STTEEEEEETTSCEEEEEECC-------
T ss_pred CceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 7 49999999999999999888766544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-30 Score=233.25 Aligned_cols=259 Identities=18% Similarity=0.201 Sum_probs=167.9
Q ss_pred CeEEe-ec-CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-------cceeeeeeeeeceeeeEEeccCCccccceee
Q 017296 10 PVAVL-RG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 10 ~~~~l-~g-H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
++.++ .+ |.++|++|+|+|++++|++|+.|++|+|||... .+.+..+.+|. ..+.+++|++ ++++|+
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp--~g~~la 123 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSN--DGYYLA 123 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC------CEEEEEECT--TSCEEE
T ss_pred EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECC--CCCEEE
Confidence 44555 45 999999999999999999999999999999843 23455566665 3588899987 578999
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+++.|++|++||+..+... ...+.....|... ..+.. +.+ +
T Consensus 124 s~s~D~~v~iwd~~~~~~~---~~~~~~~~~h~~~-----------------v~~v~------------------~~p-~ 164 (330)
T 2hes_X 124 TCSRDKSVWIWETDESGEE---YECISVLQEHSQD-----------------VKHVI------------------WHP-S 164 (330)
T ss_dssp EEETTSCEEEEECCTTCCC---CEEEEEECCCSSC-----------------EEEEE------------------ECS-S
T ss_pred EEeCCCEEEEEeccCCCCC---eEEEEEeccCCCc-----------------eEEEE------------------ECC-C
Confidence 9999999999999543110 0011100000000 00000 111 1
Q ss_pred CceEEEcccCCCeEEEEecCCC--ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
.. ++++++.|++|++||+.++ +++..+..+. ....+ ..|.++. ....+++|+.|++|++||+
T Consensus 165 ~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~----------~~v~~---~~~~~~~--~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 165 EA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHE----------GTVWS---SDFDKTE--GVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp SS-EEEEEETTSCEEEEEEETTEEEEEEEECCCS----------SCEEE---EEECCSS--SSCEEEEEETTSCEEEEEE
T ss_pred CC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCC----------CcEEE---EEecCCC--CeeEEEEEeCCCeEEEEEe
Confidence 12 4677888999999998876 3455553321 11111 1344331 1235899999999999999
Q ss_pred cCCC-------Cceeeeec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC-CeEEEEECC-
Q 017296 239 RNPG-------IPLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP-GISGTSIRP- 308 (374)
Q Consensus 239 ~~~~-------~~~~~~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~-~v~~~~~sp- 308 (374)
+... .....+.. |..+|.+++|++.+ .+++++.|++|++||........ .......|.. .+.+++|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~h~~~~v~~v~~~~~ 306 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKV-FAKRALCHGVYEINVVKWLEL 306 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEE-EEEESCTTTTSCEEEEEEC--
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEE-EeccccccccceEEEEEEecC
Confidence 6421 12233444 89999999998654 68999999999999986432111 1122344554 799999999
Q ss_pred -CCCEEEEEeCCCeEEEEEccC
Q 017296 309 -DSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 309 -~~~~l~s~~~dg~v~iwd~~~ 329 (374)
++++||+|+.||+|++||+++
T Consensus 307 ~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 307 NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---CCEEEEETTSEEEEEEC--
T ss_pred CCceEEEEecCCCcEEEEEecc
Confidence 789999999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-30 Score=235.79 Aligned_cols=248 Identities=23% Similarity=0.351 Sum_probs=177.5
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~ 99 (374)
.|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|.. .+.+++|++ ++++|++++.|++|++||++++++.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCC--CEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeE
Confidence 499999999999999999999999999999888888777753 488888887 5689999999999999999876321
Q ss_pred CCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEec
Q 017296 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~ 179 (374)
..+.... ... + + .+.+.++. ++++++.|++|++||+
T Consensus 201 ----~~~~~~~-~v~--------------------~--------~----------~~~~~~~~-~l~~~s~d~~v~iwd~ 236 (393)
T 1erj_A 201 ----LTLSIED-GVT--------------------T--------V----------AVSPGDGK-YIAAGSLDRAVRVWDS 236 (393)
T ss_dssp ----EEEECSS-CEE--------------------E--------E----------EECSTTCC-EEEEEETTSCEEEEET
T ss_pred ----EEEEcCC-CcE--------------------E--------E----------EEECCCCC-EEEEEcCCCcEEEEEC
Confidence 0000000 000 0 0 01111223 4567788999999999
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC-----------Cceeee
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-----------IPLTAM 248 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~-----------~~~~~~ 248 (374)
++++.+..+...... ..++ .....+ ..|.++ ...+++|+.||+|++||++... .....+
T Consensus 237 ~~~~~~~~~~~~~~~-~~~h--~~~v~~---v~~~~~----g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 237 ETGFLVERLDSENES-GTGH--KDSVYS---VVFTRD----GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp TTCCEEEEEC-------CCC--SSCEEE---EEECTT----SSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCCcEEEeecccccC-CCCC--CCCEEE---EEECCC----CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 999877665321100 0011 111111 134332 2368999999999999997531 234467
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC------CCCEEEEEeCCCeE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRV 322 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~s~~~dg~v 322 (374)
.+|...|.++++++++..+++|+.|++|++||++... .. ..+..|...|.+++|+| ++++|++|+.||+|
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~--~~--~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i 382 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--PL--LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 382 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC--EE--EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe--EE--EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcE
Confidence 7899999999999999999999999999999987543 22 34566888899999876 68899999999999
Q ss_pred EEEEccC
Q 017296 323 RIYNYRK 329 (374)
Q Consensus 323 ~iwd~~~ 329 (374)
++|++..
T Consensus 383 ~iW~~~~ 389 (393)
T 1erj_A 383 RIWKYKK 389 (393)
T ss_dssp EEEEEEE
T ss_pred EECcccc
Confidence 9999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-31 Score=248.67 Aligned_cols=291 Identities=14% Similarity=0.186 Sum_probs=188.5
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-----------eeeeeeeeece----------eeeEEeccCCccc
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----------TVSSSWVHSAA----------HGIVSVATGPSIG 75 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-----------~~~~~~~~~~~----------~~~~~~~~~~~~~ 75 (374)
|.+.|++|+|+|+|++|++|+.|+.|+|||+.+++ .+..+.+|... ..+.+++|++..+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 68999999999999999999999999999998776 35566666422 4588889988433
Q ss_pred cceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCC
Q 017296 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155 (374)
Q Consensus 76 ~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (374)
...+++++.|++|++||+.++... ...+ . ........ ..... + ....
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~--------~~~~-----~-~~~~~g~~-----------~~~~~-~-------~~~~ 153 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKR--------PEGY-----N-LKEEDGRY-----------RDPTT-V-------TTLR 153 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEE--------EECC-----S-CC-------------------CCC-C-------CSCC
T ss_pred cceEEEeCCCCeEEEEecccccCC--------ccee-----c-ccCccccc-----------cCccc-c-------cceE
Confidence 368999999999999999764210 0000 0 00000000 00000 0 0000
Q ss_pred CCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEE
Q 017296 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (374)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~i 235 (374)
+. .+.. .. |.+. ......+.. .+. ....++ .+.++ + ..+++| .||.|++
T Consensus 154 ~~------~~~~----~~---~~~~-~~~~~~~~~-------~h~--~~v~~~---~~~~~---~-~~l~s~-~d~~i~i 202 (447)
T 3dw8_B 154 VP------VFRP----MD---LMVE-ASPRRIFAN-------AHT--YHINSI---SINSD---Y-ETYLSA-DDLRINL 202 (447)
T ss_dssp CC------EEEE----EE---EEEE-EEEEEEECS-------CCS--SCCCEE---EECTT---S-SEEEEE-CSSEEEE
T ss_pred ec------cccc----hh---eeee-ccceEEecc-------CCC--cceEEE---EEcCC---C-CEEEEe-CCCeEEE
Confidence 00 0000 00 0000 001111110 011 111221 23332 2 257788 7999999
Q ss_pred EeccCCCCcee-------eeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC--------
Q 017296 236 WDIRNPGIPLT-------AMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP-------- 299 (374)
Q Consensus 236 wdl~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~-------- 299 (374)
||++.....+. .+.+|...|.+++|+|++ ..+++++.|++|++||++...........+..+..
T Consensus 203 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (447)
T 3dw8_B 203 WHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFS 282 (447)
T ss_dssp EETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHH
T ss_pred EECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcccccccc
Confidence 99974333333 356899999999999998 88999999999999999765420000112233333
Q ss_pred ----CeEEEEECCCCCEEEEEeCCCeEEEEEccC-CeEEEEecccCCc---------------eEEEEEeCCCCEEEEEe
Q 017296 300 ----GISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHAT---------------CNAVSFSSDCKLMASAS 359 (374)
Q Consensus 300 ----~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~sp~~~~las~s 359 (374)
.+.+++|+|++++|++++. ++|++||+.. ++.+..+.+|... +..++|+|++++|++++
T Consensus 283 ~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 283 EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 7999999999999999998 9999999987 8888888888642 23489999999999999
Q ss_pred CCCcEEEecCCCC
Q 017296 360 EDSTVALWELYPP 372 (374)
Q Consensus 360 ~D~~v~~W~~~~~ 372 (374)
.|+.|++|++..+
T Consensus 362 ~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 362 YNNFFRMFDRNTK 374 (447)
T ss_dssp STTEEEEEETTTC
T ss_pred cCCEEEEEEcCCC
Confidence 9999999998654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-30 Score=232.98 Aligned_cols=266 Identities=18% Similarity=0.226 Sum_probs=178.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+...+.+|...|++++|+|++.+|+||+.|++|++||+.+++.+..+.+|.. .+.++++++ +++++++++.|++|
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~--~v~~v~~sp--~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS--EVYSVAFSP--DNRQILSAGAEREI 142 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS--CEEEEEECS--STTEEEEEETTSCE
T ss_pred cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC--cEEEEEECC--CCCEEEEEcCCCEE
Confidence 35678999999999999999999999999999999999999998888877763 588889987 66899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+..... ........|...+ .+..+.+.. .......+. ..+++++
T Consensus 143 ~~wd~~~~~~-----~~~~~~~~~~~~v-----------------~~~~~~~~~--------~~~~~~~~~--~~~l~s~ 190 (343)
T 2xzm_R 143 KLWNILGECK-----FSSAEKENHSDWV-----------------SCVRYSPIM--------KSANKVQPF--APYFASV 190 (343)
T ss_dssp EEEESSSCEE-----EECCTTTSCSSCE-----------------EEEEECCCC--------CSCSCCCSS--CCEEEEE
T ss_pred EEEeccCCce-----eeeecccCCCcee-----------------eeeeecccc--------ccccccCCC--CCEEEEE
Confidence 9999963210 0000000000000 000000000 000000011 1246677
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|++|++||. +.+....+..+ . ....+ ..+.++ ...|++|+.||.|++||++....+...+
T Consensus 191 ~~d~~i~iwd~-~~~~~~~~~~h--------~--~~v~~---~~~s~~----g~~l~sgs~dg~v~iwd~~~~~~~~~~~ 252 (343)
T 2xzm_R 191 GWDGRLKVWNT-NFQIRYTFKAH--------E--SNVNH---LSISPN----GKYIATGGKDKKLLIWDILNLTYPQREF 252 (343)
T ss_dssp ETTSEEEEEET-TTEEEEEEECC--------S--SCEEE---EEECTT----SSEEEEEETTCEEEEEESSCCSSCSEEE
T ss_pred cCCCEEEEEcC-CCceeEEEcCc--------c--ccceE---EEECCC----CCEEEEEcCCCeEEEEECCCCcccceee
Confidence 88999999994 34444444321 1 11111 134332 2369999999999999996544444433
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe---------eecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---------INLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
.+...|.+++|+|++.. ++++.|+.|++||+............ ...|...+.+++|+|++++|++|+.|
T Consensus 253 -~~~~~v~~v~~sp~~~~-la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D 330 (343)
T 2xzm_R 253 -DAGSTINQIAFNPKLQW-VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD 330 (343)
T ss_dssp -ECSSCEEEEEECSSSCE-EEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred -cCCCcEEEEEECCCCCE-EEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence 35667999999998765 55667999999999754332211111 11455679999999999999999999
Q ss_pred CeEEEEEccCC
Q 017296 320 RRVRIYNYRKG 330 (374)
Q Consensus 320 g~v~iwd~~~~ 330 (374)
|+|++|++.++
T Consensus 331 g~v~~w~~~~g 341 (343)
T 2xzm_R 331 GVIRTFSFETS 341 (343)
T ss_dssp SEEEEEEEEEE
T ss_pred ceEEEEEEEcc
Confidence 99999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.8e-29 Score=227.12 Aligned_cols=251 Identities=18% Similarity=0.323 Sum_probs=180.5
Q ss_pred eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
....+.+|.. .|.+++|++ ++++|+||+.|++|++||..+++.. ..+.. + ..
T Consensus 56 ~~~~l~gH~~--~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~~~~~----~~~~~---~----------~~------- 107 (354)
T 2pbi_B 56 TRRTLKGHGN--KVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKE----HAVTM---P----------CT------- 107 (354)
T ss_dssp EEEEEECCSS--CEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEE----EEEEC---S----------SS-------
T ss_pred EEEEecCCCC--eEEEEEECC--CCCEEEEEeCCCeEEEEECCCCCcc----eEEec---C----------CC-------
Confidence 3456667764 488899987 5689999999999999998775321 00000 0 00
Q ss_pred CCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCce------eEEeccCccCCCCCcCCCCCc
Q 017296 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER------CTRLHQNSCGGSPNFSSKGRG 205 (374)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 205 (374)
...+. .+.++ +. ++++++.|+++++|++..... ...+..+ ...
T Consensus 108 ~v~~~------------------~~sp~-g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h----------~~~- 156 (354)
T 2pbi_B 108 WVMAC------------------AYAPS-GC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH----------TNY- 156 (354)
T ss_dssp CCCEE------------------EECTT-SS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC----------SSC-
T ss_pred CEEEE------------------EECCC-CC-EEEEeeCCCCEEEEEEeccccccccccceeeecc----------CCc-
Confidence 00000 01112 22 456778899999999865421 1111111 011
Q ss_pred ceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec--CCCceEEEecCCeEEEEEcCC
Q 017296 206 MCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDH 283 (374)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~ 283 (374)
+....|.++ ...+++++.|++|++||+++ ...+..+.+|..+|.++.+.+ ++..+++|+.|++|++||++.
T Consensus 157 --v~~~~~~~~----~~~l~t~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 157 --LSACSFTNS----DMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp --EEEEEECSS----SSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred --EEEEEEeCC----CCEEEEEeCCCcEEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 111223332 23689999999999999986 456778899999999999976 467899999999999999975
Q ss_pred CCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc--CCceEEEEEeCCCCEEEEEeCC
Q 017296 284 STGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HATCNAVSFSSDCKLMASASED 361 (374)
Q Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~las~s~D 361 (374)
.. +. ..+..|...|.+++|+|++++|++++.|++|++||++.++.+..+..+ ...+.+++|+|+|++|++++.|
T Consensus 230 ~~--~~--~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d 305 (354)
T 2pbi_B 230 GQ--CV--QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305 (354)
T ss_dssp CC--EE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred Cc--EE--EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence 43 22 334567788999999999999999999999999999988877766543 3478999999999999999999
Q ss_pred CcEEEecCCCC
Q 017296 362 STVALWELYPP 372 (374)
Q Consensus 362 ~~v~~W~~~~~ 372 (374)
++|++||+..+
T Consensus 306 ~~i~vwd~~~~ 316 (354)
T 2pbi_B 306 YTINVWDVLKG 316 (354)
T ss_dssp SCEEEEETTTC
T ss_pred CcEEEEECCCC
Confidence 99999998543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=222.02 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=126.5
Q ss_pred cCCCeEEEEec-CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 169 EQLSEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
..|++|++|++ +.++.+..+.. +++....+. |.+.. .....+++|+.|++|+|||+++ +..+.+
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~--------~~~~v~~l~-----fs~~~-g~~~~LaSgS~D~TIkIWDl~T-Gk~l~t 218 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFL--------MPPEETILT-----FAEVQ-GMQEALLGTTIMNNIVIWNLKT-GQLLKK 218 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEE--------CCCSSCEEE-----EEEEE-TSTTEEEEEETTSEEEEEETTT-CCEEEE
T ss_pred CCCCcEEEEEECCCCceeeeecc--------CCCceeeEE-----eeccC-CCCceEEEecCCCcEEEEECCC-CcEEEE
Confidence 46899999999 44776655432 222223222 22210 1223689999999999999986 556777
Q ss_pred eecCc---cCeEEEEEecCCCce------------EEEecCCeEEEEEcCCCCCeEEEEEee---ecCCCCeEEEEECCC
Q 017296 248 MKVHL---EPVLCLSIDESCNGG------------ISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPGISGTSIRPD 309 (374)
Q Consensus 248 ~~~h~---~~v~~~~~~~~~~~~------------~s~s~D~~i~lwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~ 309 (374)
+.+|. ..+.+++|+|++..+ ++|+.|++|++||.+. +........ ..|...+.+..+ +
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t--gk~l~v~~~~~p~Gh~~~~lsg~~--s 294 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT--TLSVGVMLYCLPPGQAGRFLEGDV--K 294 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT--TEEEEEEEECCCTTCCCCEEEEEE--E
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC--CEEEEEEEeeccCCCcceeEcccc--C
Confidence 77654 367778899888765 6788999999999864 333322111 123323333333 3
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE-EEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+.++|+++.|++|+|||+.+++.+.++.+|...+. +++|+|||++|||||.|++||||++
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 77899999999999999999999999999987655 5899999999999999999999986
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=234.89 Aligned_cols=258 Identities=21% Similarity=0.295 Sum_probs=193.8
Q ss_pred eEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcc----------cceeeeeeeeeceeeeEEeccCCccccc-e
Q 017296 11 VAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ----------HRTVSSSWVHSAAHGIVSVATGPSIGLN-K 78 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 78 (374)
...+.+|.+.|++|+|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|.. .+.++++++. +. .
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~--~~~~ 196 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK--EGYGLSWNPN--LNGY 196 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS--CCCCEEECTT--STTE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC--CeEEEEeCCC--CCCe
Confidence 4567799999999999997 68999999999999999976 455666666653 4777888773 34 8
Q ss_pred eeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 79 l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
|++|+.||+|++||+..+.... ..+ . +.
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~---~~~------------~--~~----------------------------------- 224 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEH---RVI------------D--AK----------------------------------- 224 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGG---GEE------------E--CS-----------------------------------
T ss_pred EEEEeCCCeEEEEeCCCCCCCC---cee------------c--cc-----------------------------------
Confidence 9999999999999998642100 000 0 00
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
....+ ..+.| + + ..+.+. +...+++++.||.|++||+
T Consensus 225 -----~~~~~-h~~~v--~-----------------------------~---v~~~p~---~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 225 -----NIFTG-HTAVV--E-----------------------------D---VAWHLL---HESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp -----EEECC-CSSCE--E-----------------------------E---EEECSS---CTTEEEEEETTSEEEEEET
T ss_pred -----eeecC-CCCCE--e-----------------------------e---eEEeCC---CCCEEEEEeCCCeEEEEEC
Confidence 00000 00000 0 0 012211 1225788999999999999
Q ss_pred cCCC--CceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEE
Q 017296 239 RNPG--IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAA 314 (374)
Q Consensus 239 ~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~ 314 (374)
+... .+...+..|..+|++++|++++. .+++|+.|++|++||++..... ...+..|...+.+++|+|+++ +++
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SEEEECCSSCEEEEEECSSCTTEEE
T ss_pred CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eEEeecCCCCEEEEEECCCCCCEEE
Confidence 8652 45667788999999999999887 4789999999999999753221 123445677899999999985 689
Q ss_pred EEeCCCeEEEEEccC--------------CeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 315 TAGWDRRVRIYNYRK--------------GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 315 s~~~dg~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
+++.|++|++||+.. .+.+..+.+|...|.+++|+|+++ +|++++.|+.|++|++.
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 999999999999976 366778889999999999999999 99999999999999874
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=220.68 Aligned_cols=252 Identities=19% Similarity=0.339 Sum_probs=182.9
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+....+.+|..+|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|.. .+.++.+++ +++.+++++.|++
T Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~s~~~d~~ 130 (312)
T 4ery_A 55 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNP--QSNLIVSGSFDES 130 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECS--SSSEEEEEETTSC
T ss_pred cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcC--CCCEEEEEeCCCc
Confidence 456788999999999999999999999999999999999999988888877753 477888887 5689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||+++++... .+........ +.. +.+ ++. ++++
T Consensus 131 i~iwd~~~~~~~~----~~~~~~~~v~--------------------~~~------------------~~~-~~~-~l~~ 166 (312)
T 4ery_A 131 VRIWDVKTGKCLK----TLPAHSDPVS--------------------AVH------------------FNR-DGS-LIVS 166 (312)
T ss_dssp EEEEETTTCCEEE----EECCCSSCEE--------------------EEE------------------ECT-TSS-EEEE
T ss_pred EEEEECCCCEEEE----EecCCCCcEE--------------------EEE------------------EcC-CCC-EEEE
Confidence 9999998764210 0000000000 000 111 122 4567
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|+.|++||+++++.+..+.... ... +....+.++ ...+++++.||.|++||+++ ...+..
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~---~~~~~~~~~----~~~l~~~~~d~~i~iwd~~~-~~~~~~ 229 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDD---------NPP---VSFVKFSPN----GKYILAATLDNTLKLWDYSK-GKCLKT 229 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSS---------CCC---EEEEEECTT----SSEEEEEETTTEEEEEETTT-TEEEEE
T ss_pred EeCCCcEEEEECCCCceeeEEeccC---------CCc---eEEEEECCC----CCEEEEEcCCCeEEEEECCC-CcEEEE
Confidence 7789999999999988766653211 001 111234332 23688999999999999986 445666
Q ss_pred eecCccCeEEE--EE-ecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe--CCCeE
Q 017296 248 MKVHLEPVLCL--SI-DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG--WDRRV 322 (374)
Q Consensus 248 ~~~h~~~v~~~--~~-~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~v 322 (374)
+.+|.....++ .+ .+++..+++|+.|+.|++||++... ....+..|...+.+++|+|+++++++++ .|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE----IVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch----hhhhhhccCCcEEEEeecCcCCceEEEEccCCccE
Confidence 77777654332 33 3566778999999999999997543 2345567778899999999999999987 69999
Q ss_pred EEEEcc
Q 017296 323 RIYNYR 328 (374)
Q Consensus 323 ~iwd~~ 328 (374)
++|+.+
T Consensus 306 ~~W~~d 311 (312)
T 4ery_A 306 KLWKSD 311 (312)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 999863
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=229.27 Aligned_cols=240 Identities=12% Similarity=0.070 Sum_probs=169.0
Q ss_pred EeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCcee
Q 017296 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLT 105 (374)
Q Consensus 26 ~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~ 105 (374)
+.+++.+|+||+.|++|++||+.+++.+..+. ...+.++.+.+. +++++.|++|++|+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------- 104 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------- 104 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS-----EEEECSTTEEEEEETTT----------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc-----eEEecCCCeEEEEEccC----------
Confidence 34578899999999999999999888776654 123555566552 89999999999999753
Q ss_pred eeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCcee
Q 017296 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185 (374)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~ 185 (374)
.+.+||+.+++.+
T Consensus 105 -------------------------------------------------------------------~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 105 -------------------------------------------------------------------QITILDSKTNKVL 117 (343)
T ss_dssp -------------------------------------------------------------------EEEEEETTTCCEE
T ss_pred -------------------------------------------------------------------ceEEeecCCccee
Confidence 2334444444433
Q ss_pred EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee-ecCccCeEEEEEecCC
Q 017296 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESC 264 (374)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~-~~h~~~v~~~~~~~~~ 264 (374)
...... + .....++ .+.+. .....+++++.||+|++||++... ..... ..|...+.+++|+|++
T Consensus 118 ~~~~~~-------~--~~~v~~~---~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 118 REIEVD-------S--ANEIIYM---YGHNE--VNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp EEEECC-------C--SSCEEEE---ECCC-----CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECTTS
T ss_pred EEeecC-------C--CCCEEEE---EcCCC--CCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECCCC
Confidence 332210 0 0011111 12220 012368899999999999998643 34434 3455689999999999
Q ss_pred CceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc---cC
Q 017296 265 NGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY---HH 340 (374)
Q Consensus 265 ~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---h~ 340 (374)
..+++|+.|+.|++||++...... ..+.. |...|.+++|+|++++|++++ |++|++||+++++....+.. |.
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~ 258 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE 258 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred CEEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence 999999999999999997654320 12334 778899999999999999999 55999999998876544443 44
Q ss_pred CceE--EEEEeCCCCEEEEEeC-CCcEEEecCC
Q 017296 341 ATCN--AVSFSSDCKLMASASE-DSTVALWELY 370 (374)
Q Consensus 341 ~~v~--~v~~sp~~~~las~s~-D~~v~~W~~~ 370 (374)
..+. +++|+|+|++|++++. |+.|++|++.
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 4444 6999999999999998 9999999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-28 Score=218.48 Aligned_cols=259 Identities=20% Similarity=0.274 Sum_probs=178.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+..++++|...|++++|+|++++|++|+.|+.|++|+............+. ..+....+.+ .++.+++++.|+.+
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSS--DNRQIVSGSRDKTI 152 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECT--TSSCEEEEETTSCE
T ss_pred eeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCC--CceeEEEEee--cCccceeecCCCeE
Confidence 4678899999999999999999999999999999999998776655444333 2344455554 45789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+..... .......+... ..+ + .+.......+++++
T Consensus 153 ~~~d~~~~~~------~~~~~~~~~~~-----------------v~~--------~----------~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 153 KLWNTLGVCK------YTVQDESHSEW-----------------VSC--------V----------RFSPNSSNPIIVSC 191 (340)
T ss_dssp EEECTTSCEE------EEECSSSCSSC-----------------EEE--------E----------EECSCSSSCEEEEE
T ss_pred EEEEeCCCce------EEEEeccccCc-----------------ccc--------e----------EEccCCCCcEEEEE
Confidence 9999865311 00000000000 000 0 01112223456778
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|++|++||+++++....+..+. ....++ .+.++ ...+++|+.||.|++||++.. ..+..+
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~h~----------~~v~~~---~~s~~----~~~l~s~s~Dg~i~iwd~~~~-~~~~~~ 253 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIGHT----------GYLNTV---TVSPD----GSLCASGGKDGQAMLWDLNEG-KHLYTL 253 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS----------SCEEEE---EECTT----SSEEEEEETTCEEEEEETTTT-EEEEEE
T ss_pred cCCCEEEEEECCCCceeeEecCCC----------CcEEEE---EECCC----CCEEEEEeCCCeEEEEEeccC-ceeeee
Confidence 889999999999998777664321 111121 24332 236899999999999999863 445555
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEE-----EeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK-----KEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
. +...+.++.+++++ .+++++.|+.|++||++.......+. .....|...|.+++|+||+++|++|+.||+|+
T Consensus 254 ~-~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 254 D-GGDIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp E-CSSCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred c-CCceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 4 45789999998876 46788899999999997542211111 12235667899999999999999999999999
Q ss_pred EEEccCCeE
Q 017296 324 IYNYRKGSA 332 (374)
Q Consensus 324 iwd~~~~~~ 332 (374)
|||+.+|++
T Consensus 332 iW~~~tGtr 340 (340)
T 4aow_A 332 VWQVTIGTR 340 (340)
T ss_dssp EEEEEC---
T ss_pred EEeCCCcCC
Confidence 999998863
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=245.19 Aligned_cols=296 Identities=17% Similarity=0.213 Sum_probs=212.8
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++..+.+|..+|++++|+|++++|++|+.|+.|+|||..+++.+..+..|. ..+.+++|++ +++.+++++.|++
T Consensus 45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~v~~~~~s~--~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYIRSIAVHP--TKPYVLSGSDDLT 120 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS--SSSEEEEEETTSE
T ss_pred CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CCEEEEEEeC--CCCEEEEEcCCCE
Confidence 45778899999999999999999999999999999999999998888877665 3588888887 5678999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||+.++... ......+.... .+..+. +.+ ..++++
T Consensus 121 i~vw~~~~~~~~---~~~~~~~~~~v--------------------~~~~~~------------------p~~-~~~l~~ 158 (814)
T 3mkq_A 121 VKLWNWENNWAL---EQTFEGHEHFV--------------------MCVAFN------------------PKD-PSTFAS 158 (814)
T ss_dssp EEEEEGGGTSEE---EEEEECCSSCE--------------------EEEEEE------------------TTE-EEEEEE
T ss_pred EEEEECCCCceE---EEEEcCCCCcE--------------------EEEEEE------------------cCC-CCEEEE
Confidence 999999865210 00000000000 000010 101 224667
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++|++||+++++....+.... .....++ .+.+. .....+++++.||.|++||++. ......
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~---------~~~v~~~---~~~~~--~~~~~l~~~~~dg~i~~~d~~~-~~~~~~ 223 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQ---------ERGVNYV---DYYPL--PDKPYMITASDDLTIKIWDYQT-KSCVAT 223 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCC---------TTCCCEE---EECCS--TTCCEEEEECTTSEEEEEETTT-TEEEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCC---------CCCEEEE---EEEEC--CCCCEEEEEeCCCEEEEEECCC-CcEEEE
Confidence 7788999999998877655554221 0111111 23331 1223689999999999999976 456777
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC--EEEEEeCCCeEEEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIY 325 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~v~iw 325 (374)
+.+|..+|.++.++|++..+++++.||.|++||+.... . ...+..+...+.+++|+|+++ ++++ +.|+.+.+|
T Consensus 224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~ 298 (814)
T 3mkq_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK--V--EKTLNVGLERSWCIATHPTGRKNYIAS-GFDNGFTVL 298 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS--E--EEEECCSSSSEEEEEECTTCGGGEEEE-EETTEEEEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--E--EEEeecCCCcEEEEEEccCCCceEEEE-EeCCCEEEE
Confidence 88999999999999999999999999999999987543 2 233455667899999999987 3554 457778889
Q ss_pred EccCCe----------EEE---------------------------------EecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 326 NYRKGS----------ALA---------------------------------ILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 326 d~~~~~----------~~~---------------------------------~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
++.... .+. .+..|...+.+++|+|+|++|++++ |+
T Consensus 299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~ 377 (814)
T 3mkq_A 299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG 377 (814)
T ss_dssp ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence 875422 111 1123445678899999999999888 89
Q ss_pred cEEEecCC
Q 017296 363 TVALWELY 370 (374)
Q Consensus 363 ~v~~W~~~ 370 (374)
.+.+|++.
T Consensus 378 ~~~i~~~~ 385 (814)
T 3mkq_A 378 EYVIYTAL 385 (814)
T ss_dssp EEEEEETT
T ss_pred EEEEEECc
Confidence 99999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=226.89 Aligned_cols=266 Identities=19% Similarity=0.236 Sum_probs=174.0
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
.+.+|...|++|+|+|+|++|++|+.|++|+|||+.+++.+..+.+|.. .+.++++ ++..+++|+.|+++++||
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~--~v~~~s~----~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA--RVGSLSW----NSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE----ETTEEEEEETTSEEEEEE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC--ceEEEee----CCCEEEEEeCCCceeEee
Confidence 3457889999999999999999999999999999999998888877753 3555555 347899999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
...... .+.....|...+. .. .+ .+... +++++..|+
T Consensus 216 ~~~~~~------~~~~~~~h~~~~~-------------------~~----------------~~-~~~g~-~l~s~~~D~ 252 (420)
T 4gga_A 216 VRVAEH------HVATLSGHSQEVC-------------------GL----------------RW-APDGR-HLASGGNDN 252 (420)
T ss_dssp TTSSSC------EEEEEECCSSCEE-------------------EE----------------EE-CTTSS-EEEEEETTS
T ss_pred ecccce------eeEEeccccccee-------------------ee----------------ee-cCCCC-eeeeeeccc
Confidence 876421 1111000000000 00 00 01112 456777889
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEE--EEecCCcEEEEeccCCCCceeeeec
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL--AGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
.+++||+.+++......... ...... +.+ ..+.+.. ...++ +|+.|++|++||+++ +.....+.
T Consensus 253 ~v~i~~~~~~~~~~~~~~~~------~~~~~~--V~~-~~~~p~~---~~~la~~~gs~D~~I~iwd~~t-~~~~~~~~- 318 (420)
T 4gga_A 253 LVNVWPSAPGEGGWVPLQTF------TQHQGA--VKA-VAWCPWQ---SNVLATGGGTSDRHIRIWNVCS-GACLSAVD- 318 (420)
T ss_dssp CEEEEESSCCSSCSCCSEEE------CCCSSC--EEE-EEECTTC---TTEEEEEECTTTCEEEEEETTT-TEEEEEEE-
T ss_pred cceEEeeccccccceeeeee------cccCCc--eee-eeeCCCc---ccEEEEEeecCCCEEEEEeCCc-cccceeec-
Confidence 99999998875321110000 000111 111 1233322 12333 467899999999986 34444444
Q ss_pred CccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 251 HLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+...+.++.+.+++..+++++ .|+.|++||+.... . ...+..|...|.+++|+||+++|+||+.|++|+|||+.
T Consensus 319 ~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~--v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--K--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--E--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--E--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 456788999998888887765 79999999996543 2 34566788899999999999999999999999999998
Q ss_pred CCeEEEEecccCCceEE
Q 017296 329 KGSALAILKYHHATCNA 345 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~ 345 (374)
+..+......+...+..
T Consensus 395 ~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 395 ELDPARRREREKASAAK 411 (420)
T ss_dssp CSSCC------------
T ss_pred CCCccchhhhccCCccc
Confidence 77666555555544433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=236.36 Aligned_cols=304 Identities=14% Similarity=0.180 Sum_probs=195.5
Q ss_pred CCCCCCeEEeecCCCceeEEEE----------eCCCCEEEEecCCCcEEEEeCcccceeeee-eeeeceeeeEEeccCCc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCF----------HQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPS 73 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~----------~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (374)
++|-+...++..|..-+..+.+ ++++..+++++ .|+ .+++.+..+ .+|. ..|.++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~--~~V~~~~~s~~ 74 (437)
T 3gre_A 4 HHHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGN-LRGKLIATLMENEP--NSITSSAVSPG 74 (437)
T ss_dssp ----------CCCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTT--SCEEEEEEECS
T ss_pred cccccCCCChhHHHHHhccCCCCCChhchhhcCCccccccccc------ccc-ccceEEeeeccCCC--CceEEEEECCC
Confidence 3444555566666666655554 45566666554 498 456777776 5554 35888888762
Q ss_pred cccceeeeccccCeEEEEecCC---CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 74 IGLNKVISQGRDGTVKCWDIEN---GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 74 ~~~~~l~s~~~D~~vrvwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
++++|++|+.|++|++||+.+ +.... ...... +..... +..
T Consensus 75 -~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~-h~~~v~--------------------~~~------------- 118 (437)
T 3gre_A 75 -ETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTYD-CSSTVT--------------------QIT------------- 118 (437)
T ss_dssp -SSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEEE-CSSCEE--------------------EEE-------------
T ss_pred -CCCEEEEecCCceEEEeECcccccCcccc-eeeecc-CCCCEE--------------------EEE-------------
Confidence 457999999999999999976 32110 011000 000000 000
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecC---CCceeEEeccCccCCCCCcC---CCCCcceeEEEeeecCCCCCceEE
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLN---TAERCTRLHQNSCGGSPNFS---SKGRGMCMAVQAYLPSKSQGFVNV 224 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
+.+ +.. ++++++.|++|++||++ +++.......+. .....+. ......++. +.. ......+
T Consensus 119 -----~~~-~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~---~~~--~~~~~~l 185 (437)
T 3gre_A 119 -----MIP-NFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC-IRKINLKNFGKNEYAVRMR---AFV--NEEKSLL 185 (437)
T ss_dssp -----ECT-TSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEE-EEEEEGGGGSSCCCEEEEE---EEE--CSSCEEE
T ss_pred -----EeC-CCC-EEEEEeCCCEEEEEEeccccCCceeeccccce-eEEEEccCcccccCceEEE---EEE--cCCCCEE
Confidence 111 122 45677789999999995 555443332110 0000111 111112211 111 1223468
Q ss_pred EEEecCCcEEEEeccCCCCceeeeec--CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee-cCCCCe
Q 017296 225 LAGYEDGSILVWDIRNPGIPLTAMKV--HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN-LERPGI 301 (374)
Q Consensus 225 ~~gs~dg~i~iwdl~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v 301 (374)
++|+.||.|++||++. ...+..+.+ |..+|.+++|++++..+++|+.|++|++||++.. ... ..+. .+...|
T Consensus 186 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~--~~~~~~~~~~v 260 (437)
T 3gre_A 186 VALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--VLI--RSWSFGDHAPI 260 (437)
T ss_dssp EEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEE--EEEBCTTCEEE
T ss_pred EEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--cEE--EEEecCCCCce
Confidence 9999999999999986 456777777 8899999999999999999999999999999753 332 2222 344578
Q ss_pred EEEEE----CCCCCEEEEEeCCCeEEEEEccCCeEEEEecc--------------------------cCCceEEEEEeCC
Q 017296 302 SGTSI----RPDSKIAATAGWDRRVRIYNYRKGSALAILKY--------------------------HHATCNAVSFSSD 351 (374)
Q Consensus 302 ~~~~~----sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------------------------h~~~v~~v~~sp~ 351 (374)
.++++ +|++++|++++.||+|++||+.+++.+..+.+ |...|.+++|+ +
T Consensus 261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 99955 46788999999999999999999998877764 44568888998 7
Q ss_pred CCEEEEEeCCCcEEEecCCCC
Q 017296 352 CKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 352 ~~~las~s~D~~v~~W~~~~~ 372 (374)
+++|++++.|+.|++||+..+
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCG
T ss_pred ceEEEecCCCCeEEEEECCCc
Confidence 799999999999999998754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=240.75 Aligned_cols=255 Identities=19% Similarity=0.271 Sum_probs=177.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+...+.+|...|++++|+|++++|+||+.|++|+|||+.+++.+..+.+|.. .+.++++++ ++++++|++.|++||
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~--~v~~~~~s~--~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK--DVLSVAFSL--DNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECT--TSSCEEEEETTSCEE
T ss_pred ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC--CEEEEEEeC--CCCEEEEEeCCCEEE
Confidence 4678999999999999999999999999999999999999988888877764 488888887 568999999999999
Q ss_pred EEecCCCCCCCCCceeeee-cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 90 CWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+||...... ..+.. ...|.. ...+.. +.+.+...+++++
T Consensus 498 iwd~~~~~~-----~~~~~~~~~h~~-----------------~v~~~~------------------~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 498 LWNTLGECK-----YTISEGGEGHRD-----------------WVSCVR------------------FSPNTLQPTIVSA 537 (694)
T ss_dssp EECTTSCEE-----EEECSSTTSCSS-----------------CEEEEE------------------ECSCSSSCEEEEE
T ss_pred EEECCCCcc-----eeeccCCCCCCC-----------------cEEEEE------------------EeCCCCcceEEEE
Confidence 999854310 00000 000000 000000 1112222356788
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|++|++||+++++....+..+. ....++ .+.++ ...+++|+.||+|++||+++. ..+..+
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~~h~----------~~v~~v---~~spd----g~~l~sg~~Dg~i~iwd~~~~-~~~~~~ 599 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLAGHT----------GYVSTV---AVSPD----GSLCASGGKDGVVLLWDLAEG-KKLYSL 599 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS----------SCEEEE---EECTT----SSEEEEEETTSBCEEEETTTT-EEEECC
T ss_pred eCCCeEEEEECCCCcEEEEEcCCC----------CCEEEE---EEeCC----CCEEEEEeCCCeEEEEECCCC-ceEEEe
Confidence 889999999999988776665321 111121 24332 236899999999999999863 444444
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee---------------ecCCCCeEEEEECCCCCEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---------------NLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~---------------~~~~~~v~~~~~sp~~~~l 313 (374)
. +...+.+++|+|++.. ++++.|+.|++||++.......+.... ..+...+.+++|+|++++|
T Consensus 600 ~-~~~~v~~~~~sp~~~~-l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l 677 (694)
T 3dm0_A 600 E-ANSVIHALCFSPNRYW-LCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677 (694)
T ss_dssp B-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred c-CCCcEEEEEEcCCCcE-EEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence 3 4568999999998765 455567789999997542211111000 0111237889999999999
Q ss_pred EEEeCCCeEEEEEcc
Q 017296 314 ATAGWDRRVRIYNYR 328 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~ 328 (374)
++|+.||+|++||+.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=230.22 Aligned_cols=268 Identities=13% Similarity=0.054 Sum_probs=158.9
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccccee-----eeeeeeeceeeeEEeccCC------ccccceeeecc
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-----SSSWVHSAAHGIVSVATGP------SIGLNKVISQG 83 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~~l~s~~ 83 (374)
..|...+...++++++.+|++|+.|++|++||..+++.. ..+.+|.. .|.+++|++ ..+++.|+|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~--~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN--FVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS--CEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC--ceEEEEEccccccccCCCCCEEEEEE
Confidence 345555555556667788999999999999999877542 23456653 477888865 23568999999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|++||+||+.++.. ............ +.. +.+. ...
T Consensus 164 ~D~tv~~Wd~~~~~~----~~~~~~~~~~v~--------------------~v~------------------~~p~-~~~ 200 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGP----ILAGYPLSSPGI--------------------SVQ------------------FRPS-NPN 200 (393)
T ss_dssp TTSEEEEEEEETTEE----EEEEEECSSCEE--------------------EEE------------------EETT-EEE
T ss_pred CCCeEEEEECCCCce----eeeecCCCCCcE--------------------EEE------------------ECCC-CCc
Confidence 999999999976521 001000000000 000 1111 133
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++++.|++|++||+++++......+... ..... .++..... ..
T Consensus 201 ~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~--------~~~~~-----------------~~s~~~~~----------~~ 245 (393)
T 4gq1_A 201 QLIVGERNGNIRIFDWTLNLSAEENSQTEL--------VKNPW-----------------LLTLNTLP----------LV 245 (393)
T ss_dssp EEEEEETTSEEEEEETTCCC------------------CSCCC-----------------SEEEESGG----------GC
T ss_pred eEEecCCCCEEEEEECCCCcccccccccCC--------cccce-----------------EEeccccc----------ce
Confidence 567888899999999998875444332110 00000 01110000 01
Q ss_pred ceeeeecCccCeEEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEE---------------eeecCCCCeEEEEEC
Q 017296 244 PLTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKK---------------EINLERPGISGTSIR 307 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~---------------~~~~~~~~v~~~~~s 307 (374)
......+|...+.++.+. +++..+++++.|+++++||+........+.. ..... .......|+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF-PSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-CCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-CcceeEEEc
Confidence 112235688899999986 7888999999999999999864321111100 00011 112223344
Q ss_pred C--CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 308 P--DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 308 p--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
| ++.++++|+.||+|++||+.+++....+.+|...|.+++|+|||++||+++.||.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 3 4556788889999999999999888888889999999999999999999998875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=219.89 Aligned_cols=266 Identities=18% Similarity=0.253 Sum_probs=179.1
Q ss_pred eecCCCceeEEEEeCC---CCEEEEecCCCcEEEEeCcccc-eeeeeeeeeceeeeEEeccC----Cccccceeeecccc
Q 017296 14 LRGHRASVTDVCFHQT---KPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATG----PSIGLNKVISQGRD 85 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~---~~~l~s~s~D~~v~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~s~~~D 85 (374)
..+|..+|++++|+|+ +.+|++|+.|+.|++||+.+++ .+..+..|.. .+.++.+. .+++++.|++++.|
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCC
Confidence 3489999999999998 6999999999999999999887 6777766653 36666332 12367899999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+.+++.. ...+.....+. ...+...... ..+. ++.. ++
T Consensus 139 ~~i~vwd~~~~~~~---~~~~~~~~~~~------------------~~~v~~~~~~------------~~~~-~~~~-~l 183 (357)
T 3i2n_A 139 GTVKVWDPRQKDDP---VANMEPVQGEN------------------KRDCWTVAFG------------NAYN-QEER-VV 183 (357)
T ss_dssp SCEEEECTTSCSSC---SEEECCCTTSC------------------CCCEEEEEEE------------CCCC--CCC-EE
T ss_pred CeEEEEeCCCCCCc---ceeccccCCCC------------------CCceEEEEEE------------eccC-CCCC-EE
Confidence 99999999876411 11111000000 0000000000 0011 1222 45
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++++.|+.|++||+++++........ ....+ ..+.+... ....+++|+.||.|++||++... +.
T Consensus 184 ~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~v~~---~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~ 247 (357)
T 3i2n_A 184 CAGYDNGDIKLFDLRNMALRWETNIK-----------NGVCS---LEFDRKDI-SMNKLVATSLEGKFHVFDMRTQH-PT 247 (357)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECS-----------SCEEE---EEESCSSS-SCCEEEEEESTTEEEEEEEEEEE-TT
T ss_pred EEEccCCeEEEEECccCceeeecCCC-----------CceEE---EEcCCCCC-CCCEEEEECCCCeEEEEeCcCCC-cc
Confidence 66777899999999998764433211 11111 12333100 22368899999999999997532 22
Q ss_pred e-----eeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCe---------------EEEEEeeecCCCCeEEE
Q 017296 246 T-----AMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGS---------------CVIKKEINLERPGISGT 304 (374)
Q Consensus 246 ~-----~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~---------------~~~~~~~~~~~~~v~~~ 304 (374)
. .+.+|..+|.++.|+|++. .+++++.||.|++||++..... ......+..|...|.++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 2 2348999999999999887 7899999999999999754322 12344566777889999
Q ss_pred EECCCCCEEE-EEeCCCeEEEEEccCCeE
Q 017296 305 SIRPDSKIAA-TAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 305 ~~sp~~~~l~-s~~~dg~v~iwd~~~~~~ 332 (374)
+|+|++++|+ +++.||+|++||+.+.+.
T Consensus 328 ~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 328 DWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999999998 899999999999987653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=227.22 Aligned_cols=254 Identities=16% Similarity=0.254 Sum_probs=185.5
Q ss_pred CCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCccc-------ceeeeeeeeeceeeeEEeccCCccccceee
Q 017296 9 DPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
+++..+.+|.++|++++|+| ++.+|++|+.|++|+|||+.++ +++..+.+|. ..+.++++++. +.+.++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~-~~~~l~ 148 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT--KRVGIVAWHPT-AQNVLL 148 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS--SCEEEEEECSS-BTTEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC--CeEEEEEECcC-CCCEEE
Confidence 46667899999999999999 8999999999999999999887 4566666665 45888888873 126899
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+++.|++|++||+.+++.. .. +..
T Consensus 149 s~~~dg~i~iwd~~~~~~~-------~~---------~~~---------------------------------------- 172 (402)
T 2aq5_A 149 SAGCDNVILVWDVGTGAAV-------LT---------LGP---------------------------------------- 172 (402)
T ss_dssp EEETTSCEEEEETTTTEEE-------EE---------ECT----------------------------------------
T ss_pred EEcCCCEEEEEECCCCCcc-------EE---------Eec----------------------------------------
Confidence 9999999999999865210 00 000
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.+ ..+.| .+ ..+.++ ...+++++.||.|++||+++
T Consensus 173 ------~~-~~~~v-------------------------------~~---~~~~~~----~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 173 ------DV-HPDTI-------------------------------YS---VDWSRD----GALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp ------TT-CCSCE-------------------------------EE---EEECTT----SSCEEEEETTSEEEEEETTT
T ss_pred ------CC-CCCce-------------------------------EE---EEECCC----CCEEEEEecCCcEEEEeCCC
Confidence 00 00000 00 012111 12488899999999999986
Q ss_pred CCCceeee-ecCccC-eEEEEEecCCCceEEE---ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE-
Q 017296 241 PGIPLTAM-KVHLEP-VLCLSIDESCNGGISG---GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA- 314 (374)
Q Consensus 241 ~~~~~~~~-~~h~~~-v~~~~~~~~~~~~~s~---s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~- 314 (374)
...+..+ ..|... +.++.|++++..+++| +.|+.|++||++........ ... .+...+.+++|+|++++++
T Consensus 208 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~~~~v~~~~~s~~~~~l~~ 284 (402)
T 2aq5_A 208 -GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL-QEL-DTSSGVLLPFFDPDTNIVYL 284 (402)
T ss_dssp -TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE-EEC-CCCSSCEEEEEETTTTEEEE
T ss_pred -CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE-Eec-cCCCceeEEEEcCCCCEEEE
Confidence 3445556 678765 8999999998888888 79999999999754321111 111 2445799999999999986
Q ss_pred EEeCCCeEEEEEccCCeE-EEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 315 TAGWDRRVRIYNYRKGSA-LAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~-~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+++.||+|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++..
T Consensus 285 ~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 285 CGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 455799999999998773 444444 4589999999999998875 577999999854
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=211.80 Aligned_cols=258 Identities=19% Similarity=0.239 Sum_probs=174.6
Q ss_pred CCeEEe--ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVL--RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l--~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+++.++ ++|...|++|+|+|++++|+||+.|++|++||..+++.+..+.+|... +.++.. ++..+++++.++
T Consensus 56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~--~~~~~~----~~~~l~s~~~~~ 129 (318)
T 4ggc_A 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR--VGSLSW----NSYILSSGSRSG 129 (318)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEE----ETTEEEEEETTS
T ss_pred CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce--EEEeec----CCCEEEEEecCC
Confidence 444544 578899999999999999999999999999999999988888777532 444433 346899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.+++|+...+.. .+.....|..... . . .+ ..... +++
T Consensus 130 ~~~~~~~~~~~~------~~~~~~~~~~~~~-----------------~--------~----------~~-~~~~~-~l~ 166 (318)
T 4ggc_A 130 HIHHHDVRVAEH------HVATLSGHSQEVC-----------------G--------L----------RW-APDGR-HLA 166 (318)
T ss_dssp EEEEEETTSSSC------EEEEEECCSSCEE-----------------E--------E----------EE-CTTSS-EEE
T ss_pred ceEeeecCCCce------eEEEEcCccCceE-----------------E--------E----------EE-cCCCC-EEE
Confidence 999999876521 1111000000000 0 0 00 01112 456
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+++.|++|++||+++++......... .... ..... ..+.+.. .....+++++.+++|++||.+... ..
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~--~~v~~-~~~~~~~-~~~~~~~~~~~~~~i~lwd~~~~~--~~ 234 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTF------TQHQ--GAVKA-VAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGA--CL 234 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEE------CCCC--SCEEE-EEECTTS-TTEEEEEECTTTCEEEEEETTTCC--EE
T ss_pred EEecCcceeEEECCCCcccccceeee------cccC--CceEE-EEecCCC-CcEEEEEecCCCCEEEEEeccccc--cc
Confidence 77889999999999876322111100 0000 11111 1222222 122234568889999999997533 33
Q ss_pred eeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
....+...+..+.+.+.+..+++++ .|++|++||++... . ...+..|...|++++|+|++++||||+.||+|+|
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--K--VAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--E--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--E--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 3455788899999998888777654 79999999997543 2 2456678889999999999999999999999999
Q ss_pred EEccCCe
Q 017296 325 YNYRKGS 331 (374)
Q Consensus 325 wd~~~~~ 331 (374)
||+.+..
T Consensus 311 Wd~~~~d 317 (318)
T 4ggc_A 311 WRCFELD 317 (318)
T ss_dssp ECCSCCC
T ss_pred EECCCCC
Confidence 9997643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=223.63 Aligned_cols=272 Identities=15% Similarity=0.216 Sum_probs=187.9
Q ss_pred CCeEEeecCCCceeEEEEeCC----C---CEEEEecCCCcEEEEeCcccce-----eeeeeeeec---eeeeEEeccCCc
Q 017296 9 DPVAVLRGHRASVTDVCFHQT----K---PILFAGTTGGELRIWDTVQHRT-----VSSSWVHSA---AHGIVSVATGPS 73 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~----~---~~l~s~s~D~~v~vWd~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~ 73 (374)
+++..+.+|..+|++++|+++ + .+|++++.|+.|++||+.+++. +..+..|.. ...+.++++++.
T Consensus 53 ~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 53 DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECC
T ss_pred CcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeec
Confidence 478899999999999999999 9 9999999999999999988876 666666621 145788888721
Q ss_pred --cccce-eeeccccCeEEEEecCC------CCCCC-CCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 74 --IGLNK-VISQGRDGTVKCWDIEN------GGLSS-NPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 74 --~~~~~-l~s~~~D~~vrvwd~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
++++. +++++.|+.|++||+.+ ++... .+...+.. . ..... .......+.
T Consensus 133 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-------~~~~~i~~~------- 192 (397)
T 1sq9_A 133 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG---T---VESPM-------TPSQFATSV------- 192 (397)
T ss_dssp C----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE---E---ECCSS-------SSCCCCCEE-------
T ss_pred cCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee---e---ecccc-------CCCCCceEE-------
Confidence 25678 99999999999999987 43211 00000000 0 00000 000000000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcC-CCCCcceeEEEeeecCCCCCce
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
.+.+. . ++++++.|+.|++||+++++.+..+.... .+. ......+ ..+.++ ..
T Consensus 193 -----------~~~~~-~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~h~~~~~~i~~---i~~~~~----~~ 246 (397)
T 1sq9_A 193 -----------DISER-G--LIATGFNNGTVQISELSTLRPLYNFESQH-----SMINNSNSIRS---VKFSPQ----GS 246 (397)
T ss_dssp -----------EECTT-S--EEEEECTTSEEEEEETTTTEEEEEEECCC--------CCCCCEEE---EEECSS----TT
T ss_pred -----------EECCC-c--eEEEEeCCCcEEEEECCCCceeEEEeccc-----cccccCCccce---EEECCC----CC
Confidence 11122 2 56778889999999999988776665300 000 0111111 123332 23
Q ss_pred EEEEEecC---CcEEEEeccCCCCceeeeec-------------CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC
Q 017296 223 NVLAGYED---GSILVWDIRNPGIPLTAMKV-------------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 223 ~~~~gs~d---g~i~iwdl~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
.+++++.| |.|++||+++ ...+..+.. |..+|.++.|++++..+++++.|+.|++||++...
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 324 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE- 324 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-
T ss_pred EEEEEecCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-
Confidence 68899999 9999999986 456777877 99999999999999999999999999999997542
Q ss_pred eEEEEEeee------cC---------------CCCeEEEEECCCC----------CEEEEEeCCCeEEEEEccCCe
Q 017296 287 SCVIKKEIN------LE---------------RPGISGTSIRPDS----------KIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 287 ~~~~~~~~~------~~---------------~~~v~~~~~sp~~----------~~l~s~~~dg~v~iwd~~~~~ 331 (374)
.. ..+. .| ...|.+++|+|++ ++|++++.||.|++||+.+++
T Consensus 325 -~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 325 -RI--TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp -EE--EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred -ee--EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 22 2333 44 6789999999998 799999999999999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=212.54 Aligned_cols=229 Identities=17% Similarity=0.228 Sum_probs=158.9
Q ss_pred CCeEEeecCCCceeEEEEeCC--CCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~--~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
+++.+|.||.++|++|+|+++ +++|+|||.|++|++||+.+++ .+..+..|. ..+.+++|++...+..|++++.
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEET
T ss_pred EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEEC
Confidence 578899999999999999863 8999999999999999998774 344444554 4588899988544678999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|++|++||++++.... ...+..+.. ...
T Consensus 122 d~~v~~wd~~~~~~~~--~~~~~~h~~--------------------------------------------------~v~ 149 (297)
T 2pm7_B 122 DGKVSVVEFKENGTTS--PIIIDAHAI--------------------------------------------------GVN 149 (297)
T ss_dssp TSEEEEEEBCSSSCBC--CEEEECCSS--------------------------------------------------CEE
T ss_pred CCcEEEEEecCCCcee--eeeeecccC--------------------------------------------------ccc
Confidence 9999999997652110 000000000 000
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 243 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~- 243 (374)
.+ -|....... .. .. . .......+++|+.|++|++||++....
T Consensus 150 ~~---------~~~p~~~~~---~~--------------~~-------~---~~~~~~~l~sgs~D~~v~lwd~~~~~~~ 193 (297)
T 2pm7_B 150 SA---------SWAPATIEE---DG--------------EH-------N---GTKESRKFVTGGADNLVKIWKYNSDAQT 193 (297)
T ss_dssp EE---------EECCCC---------------------------------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred eE---------eecCCcccc---cc--------------cC-------C---CCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence 00 010000000 00 00 0 000112588999999999999976432
Q ss_pred --ceeeeecCccCeEEEEEecCC---CceEEEecCCeEEEEEcCCCCCeEEEEEee--ecCCCCeEEEEECCCCCEEEEE
Q 017296 244 --PLTAMKVHLEPVLCLSIDESC---NGGISGGADQKIVLYNLDHSTGSCVIKKEI--NLERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 244 --~~~~~~~h~~~v~~~~~~~~~---~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~ 316 (374)
....+.+|..+|.+++|+|++ ..++++|.|++|++||++........ ..+ ..+...+.+++|+|++++||++
T Consensus 194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE-EESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce-eeeecccCCCcEEEEEECCCCCEEEEE
Confidence 345678999999999999974 67899999999999999764332211 111 3345679999999999999999
Q ss_pred eCCCeEEEEEcc
Q 017296 317 GWDRRVRIYNYR 328 (374)
Q Consensus 317 ~~dg~v~iwd~~ 328 (374)
+.||+|++|+..
T Consensus 273 ~~D~~v~lw~~~ 284 (297)
T 2pm7_B 273 GGDNKVTLWKEN 284 (297)
T ss_dssp ETTSCEEEEEEC
T ss_pred cCCCcEEEEEEC
Confidence 999999999986
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=228.85 Aligned_cols=272 Identities=11% Similarity=0.095 Sum_probs=185.2
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
+.-...|.+|+|+|||++++|+|.|++|+ |...++++ .+|.. .+..++|+| ++ .|+++++|+.+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~--~v~~V~FsP--dg-------~~~~~~~~~~~ 75 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSK--NLFHVKEFP--LE-------FENKLDFELAQ 75 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGG--GTEEEEEEC--CC-------CCCTTTTSCCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCc--cEEEEEECC--CC-------CcceEEEEeCC
Confidence 35578999999999999999999999999 76555544 45653 477888887 33 45555555543
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
.+...... .......+ .+.+ +++. +++++.|++|
T Consensus 76 ~~~~~~~~----~~~~V~~v----------------------------------------awSP-dG~~-LAs~s~dg~V 109 (588)
T 2j04_A 76 QNGLLNSQ----PVCYPRVC----------------------------------------KPSP-IDDW-MAVLSNNGNV 109 (588)
T ss_dssp SSCSSTTS----CSCCEEEE----------------------------------------EECS-SSSC-EEEEETTSCE
T ss_pred CceEeecC----CCCcEEEE----------------------------------------EECC-CCCE-EEEEeCCCcE
Confidence 22111000 00000000 0112 2233 4566678999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC------ceeee
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------PLTAM 248 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~------~~~~~ 248 (374)
++||..+ ++..+. +... .. .+. .....|.|+ ...+++|+.||+|++||+..... .+.++
T Consensus 110 ~iwd~~~--~l~~l~-~~~~-----~~-~~s--v~svafSPD----G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti 174 (588)
T 2j04_A 110 SVFKDNK--MLTNLD-SKGN-----LS-SRT--YHCFEWNPI----ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI 174 (588)
T ss_dssp EEEETTE--EEEECC-CSSC-----ST-TTC--EEEEEECSS----SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred EEEeCCc--eeeecc-CCCc-----cc-ccc--EEEEEEcCC----CCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence 9999544 333332 2100 00 001 111245553 23699999999999999976431 24555
Q ss_pred ----ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee-ecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 249 ----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 249 ----~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+|...|.+++|+|++ +++++.|++|++||++....... ...+ ..|+..|.+++|+ +++||+++ +++|+
T Consensus 175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~-~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIk 248 (588)
T 2j04_A 175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPV-SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVH 248 (588)
T ss_dssp ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCC-EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEE
T ss_pred ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccc-eeeecccccCcEEEEEEE--CCEEEEEe-CCeEE
Confidence 6788899999999998 89999999999999976442100 1123 2566789999999 58899887 79999
Q ss_pred EEEccCCeEEEEecccCCceEEEEE--eCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSF--SSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~--sp~~~~las~s~D~~v~~W~~~ 370 (374)
+||+.+++......+|.+.|..++| +||+..|+++++||+ |+|.+.
T Consensus 249 LWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 249 KIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 9999887764444489999999999 999999999999999 999873
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=215.42 Aligned_cols=259 Identities=17% Similarity=0.213 Sum_probs=181.2
Q ss_pred CCeEEeec-CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~g-H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
+....+.. |...|++++|+|++++|++|+.|+.|++||+.+++.+..+..|.. .+.++.+. ++.+++++.|++
T Consensus 124 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~----~~~l~~~~~dg~ 197 (401)
T 4aez_A 124 SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA--RVGCLSWN----RHVLSSGSRSGA 197 (401)
T ss_dssp CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEEE----TTEEEEEETTSE
T ss_pred cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC--ceEEEEEC----CCEEEEEcCCCC
Confidence 44455554 899999999999999999999999999999999988888776653 46777763 478999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||++.... .......+......+ . +.+ +.. ++++
T Consensus 198 i~i~d~~~~~~---~~~~~~~~~~~v~~~--------------------~------------------~~~-~~~-~l~s 234 (401)
T 4aez_A 198 IHHHDVRIANH---QIGTLQGHSSEVCGL--------------------A------------------WRS-DGL-QLAS 234 (401)
T ss_dssp EEEEETTSSSC---EEEEEECCSSCEEEE--------------------E------------------ECT-TSS-EEEE
T ss_pred EEEEecccCcc---eeeEEcCCCCCeeEE--------------------E------------------EcC-CCC-EEEE
Confidence 99999985321 000110000000000 0 111 122 4566
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe--cCCcEEEEeccCCCCce
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPL 245 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs--~dg~i~iwdl~~~~~~~ 245 (374)
++.|+.|++||+++++....+..+. ....++ .+.++ +...+++|+ .|+.|++||+++ ...+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~----------~~v~~~---~~~p~---~~~ll~~~~gs~d~~i~i~d~~~-~~~~ 297 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHN----------AAVKAV---AWCPW---QSNLLATGGGTMDKQIHFWNAAT-GARV 297 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCS----------SCCCEE---EECTT---STTEEEEECCTTTCEEEEEETTT-CCEE
T ss_pred EeCCCeEEEccCCCCCccEEecCCc----------ceEEEE---EECCC---CCCEEEEecCCCCCEEEEEECCC-CCEE
Confidence 7788999999999988776664321 111111 23332 223466655 799999999986 3445
Q ss_pred eeeecCccCeEEEEEecCCCceEEE--ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISG--GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~--s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
..+. +...+.++.|++++..++++ +.|+.|++||+... .......+..|...+.+++|+|++++|++++.||+|+
T Consensus 298 ~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~--~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 298 NTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS--GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT--EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc--cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 5554 67889999999999988884 48999999999753 3333344567778899999999999999999999999
Q ss_pred EEEccCCeEEEEe
Q 017296 324 IYNYRKGSALAIL 336 (374)
Q Consensus 324 iwd~~~~~~~~~~ 336 (374)
+||+.+++.+...
T Consensus 375 iw~~~~~~~~~~~ 387 (401)
T 4aez_A 375 FWRVYDGDHVKRP 387 (401)
T ss_dssp EEECCC-------
T ss_pred EEECCCCcccccc
Confidence 9999988876544
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=221.38 Aligned_cols=259 Identities=14% Similarity=0.161 Sum_probs=177.5
Q ss_pred CCCceeEEEEeCC----CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 17 HRASVTDVCFHQT----KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 17 H~~~V~~l~~~~~----~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
|...|++++|+|+ +.+|++|+.|+.|++||+.+++.+..+..|. ..+.++.+++. +++.+++++.|++|++||
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG--NAINELKFHPR-DPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSS-CTTEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC--CcEEEEEECCC-CCCEEEEEeCCCeEEEEE
Confidence 5688999999998 6799999999999999999998888877665 45888888763 457899999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
+++++.. ..+.....|.. ...+.. +.+ +.. ++++++.|+
T Consensus 145 ~~~~~~~----~~~~~~~~~~~-----------------~v~~~~------------------~~~-~~~-~l~~~~~dg 183 (366)
T 3k26_A 145 IQTDTLV----AIFGGVEGHRD-----------------EVLSAD------------------YDL-LGE-KIMSCGMDH 183 (366)
T ss_dssp TTTTEEE----EEECSTTSCSS-----------------CEEEEE------------------ECT-TSS-EEEEEETTS
T ss_pred eecCeEE----EEecccccccC-----------------ceeEEE------------------ECC-CCC-EEEEecCCC
Confidence 9876321 00000000000 000000 111 223 355667789
Q ss_pred eEEEEecCCCceeEEeccCccC----CC----------C----CcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE
Q 017296 173 EVEIWDLNTAERCTRLHQNSCG----GS----------P----NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~----~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~ 234 (374)
.|++||+++++....+...... .. + .........++. +. + ..+++++.||.|+
T Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~-----~-~~l~~~~~d~~i~ 254 (366)
T 3k26_A 184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR---WL-----G-DLILSKSCENAIV 254 (366)
T ss_dssp CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE---EE-----T-TEEEEECSSSEEE
T ss_pred CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE---Ec-----C-CEEEEEecCCEEE
Confidence 9999999987654332210000 00 0 000111112221 22 1 2689999999999
Q ss_pred EEeccCCCC-------------ceeeeecCccCeEEEEEecC--CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC--
Q 017296 235 VWDIRNPGI-------------PLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE-- 297 (374)
Q Consensus 235 iwdl~~~~~-------------~~~~~~~h~~~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-- 297 (374)
+||++.... .+..+..|..+|.+++|+++ +..+++++.||.|++||++...........+..|
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 334 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC 334 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence 999976432 25567789999999999988 8999999999999999997654322222334444
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
...|.+++|+|++++|++++.||+|++||+.
T Consensus 335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 335 GAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 5789999999999999999999999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=217.62 Aligned_cols=253 Identities=13% Similarity=0.114 Sum_probs=162.3
Q ss_pred EEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeecccc
Q 017296 44 IWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123 (374)
Q Consensus 44 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (374)
+|++.+.+++.....|. ..+.+++|++ +++.|++|+.|+ +++||+..++.. .....+ .
T Consensus 3 i~s~~~~~~~~~~~~h~--~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~~~~~-------~~~~~~---------~- 60 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVS--NPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHPVAHI-------MSQEMR---------H- 60 (355)
T ss_dssp ----------------C--CCCCEEEECT--TSSEEEEECSSE-EEEEEETTEEEE-------EEEECS---------C-
T ss_pred cccccccCCccccccCC--CceEEEEECC--CCCEEEEEcCCE-EEEEecCCccee-------eeeecC---------C-
Confidence 45666666665555564 4588899987 677888887764 799998754210 000000 0
Q ss_pred ccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCC
Q 017296 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (374)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (374)
. ..+. + .....+++++++.|++|++||+++++.+..+... .
T Consensus 61 ---------~--------~~~~----------~-~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~-----------~ 101 (355)
T 3vu4_A 61 ---------L--------SKVR----------M-LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD-----------A 101 (355)
T ss_dssp ---------C--------CEEE----------E-CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECS-----------S
T ss_pred ---------e--------EEEE----------E-cCCCCEEEEEECCccEEEEEECCCCcEEEEEECC-----------C
Confidence 0 0000 0 1123456677777899999999999887766421 1
Q ss_pred CcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEE--EecCCeEEEEEc
Q 017296 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS--GGADQKIVLYNL 281 (374)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s--~s~D~~i~lwd~ 281 (374)
... ++ .+.+ . .++++ .|+.|++||+......+..+.. +...+++.+ ..++. |+.||.|++||+
T Consensus 102 ~v~--~v-~~~~----~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 102 PVK--DL-FLSR----E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp CEE--EE-EECS----S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred ceE--EE-EEcC----C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 111 11 1221 1 23333 4889999999864233444433 444455555 34444 688999999999
Q ss_pred CCCCCe----E-------EE-EEeeecCCCCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEec-c-cCCceEEE
Q 017296 282 DHSTGS----C-------VI-KKEINLERPGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILK-Y-HHATCNAV 346 (374)
Q Consensus 282 ~~~~~~----~-------~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~-~-h~~~v~~v 346 (374)
+..... . .. ...+..|...|.+++|+|++++||+|+.|++ |++||+.+++.+.++. + |...|.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~ 246 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE
Confidence 753200 0 00 2345678889999999999999999999999 9999999999999998 5 99999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 347 SFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 347 ~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|+|+|++|++++.|++|++|++..+
T Consensus 247 ~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 247 KWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999999654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=216.77 Aligned_cols=288 Identities=10% Similarity=0.040 Sum_probs=200.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeee-----eeeeceeeeEEeccCCccccceeeecc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-----WVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
+.+..+..|. .+.+++|+|++.++++++.|++|++||+.+++.+... ..|. ..+.++++++ +++.+++++
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~~~s~~ 188 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL--GFVETISIPE--HNELWVSQM 188 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC--CEEEEEEEGG--GTEEEEEEG
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC--CceeEEEEcC--CCEEEEEEC
Confidence 3445555554 4569999998888999999999999999988766522 2232 2466777755 667899999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|++|++||+++++.. ..+........ +.. + .++...
T Consensus 189 ~d~~v~~~d~~~~~~~----~~~~~~~~~~~--------------------~~~------------------~-~~~~~~ 225 (433)
T 3bws_A 189 QANAVHVFDLKTLAYK----ATVDLTGKWSK--------------------ILL------------------Y-DPIRDL 225 (433)
T ss_dssp GGTEEEEEETTTCCEE----EEEECSSSSEE--------------------EEE------------------E-ETTTTE
T ss_pred CCCEEEEEECCCceEE----EEEcCCCCCee--------------------EEE------------------E-cCCCCE
Confidence 9999999999876421 01100000000 000 1 122345
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe--------cCCcEEE
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--------EDGSILV 235 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs--------~dg~i~i 235 (374)
+++++..++.|++||+++++.+..+.... . ... ..+.++ +. .+++++ .||.|++
T Consensus 226 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~--~~~-~~~~~~---g~-~l~~~~~~~~~~~~~dg~i~~ 287 (433)
T 3bws_A 226 VYCSNWISEDISVIDRKTKLEIRKTDKIG-----------L--PRG-LLLSKD---GK-ELYIAQFSASNQESGGGRLGI 287 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECCCCS-----------E--EEE-EEECTT---SS-EEEEEEEESCTTCSCCEEEEE
T ss_pred EEEEecCCCcEEEEECCCCcEEEEecCCC-----------C--ceE-EEEcCC---CC-EEEEEECCCCccccCCCeEEE
Confidence 66677778999999999988765553210 1 111 123222 22 466655 5889999
Q ss_pred EeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 236 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
||++.. .... ...|...+.+++|++++..+ ++++.|+.|++||++.. ... ..+. +...+.+++|+|++++++
T Consensus 288 ~d~~~~-~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~--~~~--~~~~-~~~~~~~~~~s~dg~~l~ 360 (433)
T 3bws_A 288 YSMDKE-KLID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK--KVQ--KSIP-VFDKPNTIALSPDGKYLY 360 (433)
T ss_dssp EETTTT-EEEE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT--EEE--EEEE-CSSSEEEEEECTTSSEEE
T ss_pred EECCCC-cEEe-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC--cEE--EEec-CCCCCCeEEEcCCCCEEE
Confidence 999753 3333 33566789999999988654 66789999999999743 322 2222 345689999999999988
Q ss_pred EEeC---------------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC-CCcEEEecCC
Q 017296 315 TAGW---------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE-DSTVALWELY 370 (374)
Q Consensus 315 s~~~---------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-D~~v~~W~~~ 370 (374)
+++. ||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |++|++|++.
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 8876 57999999999998888875 457999999999999988775 9999999985
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=222.31 Aligned_cols=266 Identities=17% Similarity=0.304 Sum_probs=178.5
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++.++.+|.++|++++| ++++|++|+.||+|++||+.+++.+..+..|. ..+.++.+++ +.+++|+.|++
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~----~~l~s~s~dg~ 234 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRFNN----GMMVTCSKDRS 234 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--SCEEEEECCT----TEEEEEETTSC
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC--CcEEEEEEcC----CEEEEeeCCCc
Confidence 4677889999999999999 78899999999999999999999888877765 3477777754 58999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++||+.++.... .......|... ..... . ++. ++++
T Consensus 235 i~vwd~~~~~~~~----~~~~~~~~~~~-------------------v~~~~------------------~-~~~-~l~s 271 (435)
T 1p22_A 235 IAVWDMASPTDIT----LRRVLVGHRAA-------------------VNVVD------------------F-DDK-YIVS 271 (435)
T ss_dssp EEEEECSSSSCCE----EEEEECCCSSC-------------------EEEEE------------------E-ETT-EEEE
T ss_pred EEEEeCCCCCCce----eeeEecCCCCc-------------------EEEEE------------------e-CCC-EEEE
Confidence 9999998764210 00000000000 00000 0 112 4567
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++|++||+++++.+..+..+. ....++ .+. ...+++|+.||.|++||+++ ...+..
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~----------~~v~~~---~~~------~~~l~~g~~dg~i~iwd~~~-~~~~~~ 331 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHK----------RGIACL---QYR------DRLVVSGSSDNTIRLWDIEC-GACLRV 331 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCS----------SCEEEE---EEE------TTEEEEEETTSCEEEEETTT-CCEEEE
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCC----------CcEEEE---EeC------CCEEEEEeCCCeEEEEECCC-CCEEEE
Confidence 7789999999999998877775321 111222 121 12689999999999999986 456778
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe-----EEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS-----CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
+.+|..+|.++.++ +..+++|+.||.|++||+...... ......+..|...|.+++| ++++|++++.||+|
T Consensus 332 ~~~h~~~v~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 332 LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp ECCCSSCEEEEECC--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred EeCCcCcEEEEEec--CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 89999999999995 457899999999999998542210 0022345567778999999 77889999999999
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEe
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFS 349 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~s 349 (374)
++||+.+........ ......++.|.
T Consensus 408 ~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 408 LIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EEEC-----------------------
T ss_pred EEEECCCCCCcccCC-CCCCccceeee
Confidence 999998765443322 22344445554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-26 Score=216.00 Aligned_cols=259 Identities=11% Similarity=0.050 Sum_probs=184.5
Q ss_pred EEeecCCCceeEEEEeCCCCEE-EEecCCCcEEEEeCc--ccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 12 AVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....+|.+.|++++|+|++++| ++|+.|++|+|||+. +++.+..+..|.....+.+++|++ +++.|++++.|+.+
T Consensus 96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--DDTTVIIADKFGDV 173 (450)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--CCCEEEEEeCCCcE
Confidence 3455788899999999999996 899999999999998 787777766554445688888987 66899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++|++.++.....+...+ .+
T Consensus 174 ~~~~~~~~~~~~~~~~~~------------------------------------------------------------~~ 193 (450)
T 2vdu_B 174 YSIDINSIPEEKFTQEPI------------------------------------------------------------LG 193 (450)
T ss_dssp EEEETTSCCCSSCCCCCS------------------------------------------------------------EE
T ss_pred EEEecCCcccccccceee------------------------------------------------------------ec
Confidence 999997653210000000 00
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA- 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~- 247 (374)
- .+.| .++ .+.++. .+...+++|+.|+.|++||++... .+..
T Consensus 194 h-~~~v-------------------------------~~~---~~sp~~-~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~ 236 (450)
T 2vdu_B 194 H-VSML-------------------------------TDV---HLIKDS-DGHQFIITSDRDEHIKISHYPQCF-IVDKW 236 (450)
T ss_dssp C-SSCE-------------------------------EEE---EEEECT-TSCEEEEEEETTSCEEEEEESCTT-CEEEE
T ss_pred c-cCce-------------------------------EEE---EEcCCC-CCCcEEEEEcCCCcEEEEECCCCc-eeeee
Confidence 0 0000 000 122210 012358899999999999998643 3444
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee---------------------ecCCCCeEEEEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---------------------NLERPGISGTSI 306 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~ 306 (374)
+.+|..+|.+++|+ ++..+++++.|++|++||++.......+...- ......+.+++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 66899999999999 99999999999999999997543222221000 012346889999
Q ss_pred CCCCCEEEEEe-CCCeEEEEEc--cCC---eEEEEecccCCceEEEEEeCCCCEEEEEeC------CCcEEEecCCC
Q 017296 307 RPDSKIAATAG-WDRRVRIYNY--RKG---SALAILKYHHATCNAVSFSSDCKLMASASE------DSTVALWELYP 371 (374)
Q Consensus 307 sp~~~~l~s~~-~dg~v~iwd~--~~~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~------D~~v~~W~~~~ 371 (374)
+|++++|++++ .|+.|++|++ .++ +.+..+..| ..|.+++|+|++.+++.++. +..|++|.+..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999999 8999999999 555 667778888 88999999996544544443 56689998743
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=214.37 Aligned_cols=233 Identities=18% Similarity=0.165 Sum_probs=157.0
Q ss_pred CeEEeecCCCceeEEEEeC--CCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 10 PVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
++..|+||.++|++|+|++ ++++|+|||.|++|++||+.+++ .+..+.+|. ..+.+++|++..++..|++|+.|
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~g~~lasgs~D 126 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD--SSVNSVCWAPHDYGLILACGSSD 126 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS--SCCCEEEECCTTTCSCEEEECSS
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC--CceEEEEECCCCCCcEEEEEcCC
Confidence 4678999999999999975 48999999999999999998764 444555564 34788888885446789999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+..+... ........|. ....+..+ .+...
T Consensus 127 ~~i~lwd~~~~~~~----~~~~~~~~h~-----------------~~v~~~~~------------------~~~~~---- 163 (316)
T 3bg1_A 127 GAISLLTYTGEGQW----EVKKINNAHT-----------------IGCNAVSW------------------APAVV---- 163 (316)
T ss_dssp SCEEEEEECSSSCE----EECCBTTSSS-----------------SCBCCCEE------------------CCCCC----
T ss_pred CCEEEEecCCCCCc----ceeeeecccc-----------------CCcceEEE------------------ccccC----
Confidence 99999999764210 0000000000 00000000 00000
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC--C
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--I 243 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~--~ 243 (374)
.+ .+ .+...+ . .+.....+++|+.|++|++||++... .
T Consensus 164 -~~----~~--~~~~~~----------------~-----------------~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 164 -PG----SL--IDHPSG----------------Q-----------------KPNYIKRFASGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp -C------------CCS----------------C-----------------CCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred -Cc----cc--cccccc----------------c-----------------CccccceEEEecCCCeEEEEEeCCCCccc
Confidence 00 00 000000 0 00001248899999999999996432 2
Q ss_pred ceeeeecCccCeEEEEEecCC----CceEEEecCCeEEEEEcCCCC-CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 244 PLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHST-GSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~----~~~~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
....+.+|..+|.+++|+|++ ..+++++.|++|++|+++... +... ...+..+...+.+++|+|++++||+++.
T Consensus 204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS-PKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB-CCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchh-hhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 466788999999999999875 679999999999999987521 1110 0112345678999999999999999999
Q ss_pred CCeEEEEEcc
Q 017296 319 DRRVRIYNYR 328 (374)
Q Consensus 319 dg~v~iwd~~ 328 (374)
|++|++|+..
T Consensus 283 D~~v~lw~~~ 292 (316)
T 3bg1_A 283 DNKVTLWKES 292 (316)
T ss_dssp SSCEEEEEEC
T ss_pred CCeEEEEEEC
Confidence 9999999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=219.87 Aligned_cols=243 Identities=14% Similarity=0.080 Sum_probs=165.3
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCC--CCCCCCceeeeecceeeeeeeeeccccccccccCCCCccccccc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG--GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (374)
..+.++++++ ++++|++++.|++|++||+.++ +... ....|... ..+..
T Consensus 12 ~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~~~~~~-------~~~~h~~~-----------------v~~~~--- 62 (377)
T 3dwl_C 12 KPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNGWKHAR-------TFSDHDKI-----------------VTCVD--- 62 (377)
T ss_dssp SCCSCCEECS--SSSEEECCCSSSCBCEEEEETTEEEECC-------CBCCCSSC-----------------EEEEE---
T ss_pred CcEEEEEECC--CCCEEEEecCCCEEEEEEccCCceEEEE-------EEecCCce-----------------EEEEE---
Confidence 3577888887 6789999999999999999865 1110 00000000 00000
Q ss_pred CceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCc---eeEEeccCccCCCCCcCCCCCcceeEEEeeecCC
Q 017296 141 GETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSK 217 (374)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (374)
+.++ .. ++++++.|++|++||+++++ ....+..+ .....+ ..+.++
T Consensus 63 ---------------~s~~-~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~----------~~~v~~---~~~~~~- 111 (377)
T 3dwl_C 63 ---------------WAPK-SN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL----------NRAATF---VRWSPN- 111 (377)
T ss_dssp ---------------ECTT-TC-CEEEEETTSSEEEC------CCCCEEECCCC----------SSCEEE---EECCTT-
T ss_pred ---------------EeCC-CC-EEEEEeCCCeEEEEEcCCCCceeeeeEeccc----------CCceEE---EEECCC-
Confidence 1112 22 35567788999999999876 33333221 111111 123332
Q ss_pred CCCceEEEEEecCCcEEEEeccCCCC--ceeeeec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC---------
Q 017296 218 SQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST--------- 285 (374)
Q Consensus 218 ~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~~~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~--------- 285 (374)
...+++|+.|+.|++||++.... ....+.. |...|.+++|+|++..+++++.|++|++||++...
T Consensus 112 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 188 (377)
T 3dwl_C 112 ---EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASV 188 (377)
T ss_dssp ---SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCS
T ss_pred ---CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccc
Confidence 22588999999999999976432 3556667 99999999999999999999999999999985321
Q ss_pred -----CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE----EEEecccCCceEEEEEeCCCCEEE
Q 017296 286 -----GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA----LAILKYHHATCNAVSFSSDCKLMA 356 (374)
Q Consensus 286 -----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~sp~~~~la 356 (374)
........+ .|...+.+++|+|++++|++++.||+|++||+.+++. +..+.+|...|.+++|+|++++|+
T Consensus 189 ~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 189 WGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp SCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred cccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 012222334 6777899999999999999999999999999998877 778889999999999999999999
Q ss_pred EEeCCCcEEEecCC
Q 017296 357 SASEDSTVALWELY 370 (374)
Q Consensus 357 s~s~D~~v~~W~~~ 370 (374)
+++.|+.+ +|+..
T Consensus 268 ~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 268 AGYNYSPI-LLQGN 280 (377)
T ss_dssp EESSSSEE-EECCC
T ss_pred EEcCCcEE-EEEeC
Confidence 99877777 56553
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-27 Score=213.14 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=179.1
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
++..+.+|...|++++|+|++++|++++.|+.|++||+.+++.............+.++++++ +++.+++++.|+.|+
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVIS 121 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEE
Confidence 678899999999999999999999999999999999998876443332222234578888887 568999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||+..+... ..... ... +. .....+.. +.+ +.. ++++++
T Consensus 122 i~d~~~~~~~----~~~~~---------~~~-~~------~~~i~~~~------------------~~~-~~~-~l~~~~ 161 (372)
T 1k8k_C 122 ICYFEQENDW----WVCKH---------IKK-PI------RSTVLSLD------------------WHP-NSV-LLAAGS 161 (372)
T ss_dssp EEEEETTTTE----EEEEE---------ECT-TC------CSCEEEEE------------------ECT-TSS-EEEEEE
T ss_pred EEEecCCCcc----eeeee---------eec-cc------CCCeeEEE------------------EcC-CCC-EEEEEc
Confidence 9999875310 00000 000 00 00000000 111 122 456677
Q ss_pred CCCeEEEEecC------------------CCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC
Q 017296 170 QLSEVEIWDLN------------------TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (374)
Q Consensus 170 ~d~~i~vWd~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg 231 (374)
.|+.|++||++ +++.+..+..+ .....+ ..+.++ ...+++++.||
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~---~~~~~~----~~~l~~~~~d~ 224 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS----------CGWVHG---VCFSAN----GSRVAWVSHDS 224 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC----------SSCEEE---EEECSS----SSEEEEEETTT
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCC----------CCeEEE---EEECCC----CCEEEEEeCCC
Confidence 78999999964 34444443211 111111 123332 23689999999
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEE--------------------
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK-------------------- 291 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~-------------------- 291 (374)
.|++||+++ ...+..+..|..++.+++|++++..++++ .|+.|++|+++...+.....
T Consensus 225 ~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (372)
T 1k8k_C 225 TVCLADADK-KMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 302 (372)
T ss_dssp EEEEEEGGG-TTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH
T ss_pred EEEEEECCC-CceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhh
Confidence 999999986 45677888999999999999988766655 99999999997622221110
Q ss_pred ----------------Eee-ecCCCCeEEEEEC-CCC---CEEEEEeCCCeEEEEEccCCe
Q 017296 292 ----------------KEI-NLERPGISGTSIR-PDS---KIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 292 ----------------~~~-~~~~~~v~~~~~s-p~~---~~l~s~~~dg~v~iwd~~~~~ 331 (374)
..+ ..|...|.+++|+ +++ ++|++++.||+|++||+.+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 303 QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp HHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 112 3677789999865 677 999999999999999997754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=215.82 Aligned_cols=256 Identities=14% Similarity=0.141 Sum_probs=175.8
Q ss_pred cceeeeeeeeeceeeeEEeccCCcccc-ceeeeccccCeEEEEecCCCCCCCCCceeeee--cceeeeeeeeeccccccc
Q 017296 50 HRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANA 126 (374)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 126 (374)
.+....+.+|. ..+.++++++ ++ +.|++|+.|++|++||+.+++... .... ......
T Consensus 63 ~~~~~~~~~h~--~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~h~~~v~------------ 122 (383)
T 3ei3_B 63 YKLHRTASPFD--RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTS----FIQGMGPGDAIT------------ 122 (383)
T ss_dssp CEEEEEECCCS--SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEE----EECCCSTTCBEE------------
T ss_pred cceEEeccCCC--CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccce----eeecCCcCCcee------------
Confidence 33444555554 4588889987 44 789999999999999998764210 0000 000000
Q ss_pred cccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcc
Q 017296 127 KQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM 206 (374)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (374)
+..+ .+.+ ..++++++.|+.|++||+++ ..+..+.... .......
T Consensus 123 --------~~~~------------------~~~~-~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-------~~~~~v~ 167 (383)
T 3ei3_B 123 --------GMKF------------------NQFN-TNQLFVSSIRGATTLRDFSG-SVIQVFAKTD-------SWDYWYC 167 (383)
T ss_dssp --------EEEE------------------ETTE-EEEEEEEETTTEEEEEETTS-CEEEEEECCC-------CSSCCEE
T ss_pred --------EEEe------------------CCCC-CCEEEEEeCCCEEEEEECCC-CceEEEeccC-------CCCCCeE
Confidence 0000 0111 23466777899999999986 3344433211 0011111
Q ss_pred eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCC
Q 017296 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST 285 (374)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~ 285 (374)
+ ..+.++ ...+++|+.||.|++||++ ..++..+.+|...|.+++|++++. .+++++.|++|++||++...
T Consensus 168 ~---~~~~~~----~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 238 (383)
T 3ei3_B 168 C---VDVSVS----RQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238 (383)
T ss_dssp E---EEEETT----TTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC
T ss_pred E---EEECCC----CCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC
Confidence 2 134432 2368999999999999994 456778889999999999999988 78999999999999997532
Q ss_pred CeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecccC-----------------CceEEEE
Q 017296 286 GSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHH-----------------ATCNAVS 347 (374)
Q Consensus 286 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-----------------~~v~~v~ 347 (374)
......... .|...+.+++|+| ++++|++++.|++|++||+.+++....+.+|. ..+..++
T Consensus 239 ~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 239 DKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp STTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred cccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEE
Confidence 111111222 3667899999999 99999999999999999999887766666553 3444577
Q ss_pred EeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 348 FSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
|+|++++ +++.|++|++||+..+
T Consensus 318 ~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 318 RYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp CBCCTTT--CTTCCCCEEEEETTTC
T ss_pred ecCCccc--ccCCCCeEEEEecCCC
Confidence 7777777 8889999999998654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=217.39 Aligned_cols=140 Identities=8% Similarity=0.141 Sum_probs=107.6
Q ss_pred EEEEEecCCcEEEEeccCCCC---ceeeeecCcc------------CeEEEEEecCCCceEEEecCCeEEEEEcCC-CCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGI---PLTAMKVHLE------------PVLCLSIDESCNGGISGGADQKIVLYNLDH-STG 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~---~~~~~~~h~~------------~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~-~~~ 286 (374)
.+++|+.||.|++||++.... ....+..|.. +|.+++|++++..+++++. +.|++||++. ...
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc
Confidence 689999999999999986432 1566777776 9999999999999999998 9999999975 222
Q ss_pred eEEEEEeeecCCC---------------CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc------------
Q 017296 287 SCVIKKEINLERP---------------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH------------ 339 (374)
Q Consensus 287 ~~~~~~~~~~~~~---------------~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h------------ 339 (374)
.. .+..|.. .+..++|+|++++|++|+.||+|++||+.+++.+ .+.+|
T Consensus 320 ~~----~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~ 394 (447)
T 3dw8_B 320 VE----TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKP 394 (447)
T ss_dssp SC----CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCC
T ss_pred cc----eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCC
Confidence 11 1222221 1234899999999999999999999999988765 33333
Q ss_pred ---------------------CCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 340 ---------------------HATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 340 ---------------------~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...|.+++|+|++.+||+++.|+ +.+|.-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 34688999999999999998876 777754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-26 Score=208.90 Aligned_cols=268 Identities=13% Similarity=0.143 Sum_probs=191.8
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccCeEEEEecCCCCCCCCCceeeeec
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~ 109 (374)
.++++++.|+.|++||+.+++.+..+..|. .+.++++++ +++++ ++++.|++|++||+.+++... .+...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~----~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA----TVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE----EEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC---CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEE----EEECC
Confidence 468899999999999999998877766553 367788887 55555 788899999999998764210 00000
Q ss_pred ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEec
Q 017296 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189 (374)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~ 189 (374)
. ... . + .+ .++++++++++..++.|++||+++++.+..+.
T Consensus 74 ~-~v~--------------------~--------~----------~~-spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 113 (391)
T 1l0q_A 74 S-SPQ--------------------G--------V----------AV-SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK 113 (391)
T ss_dssp S-SEE--------------------E--------E----------EE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred C-Ccc--------------------c--------e----------EE-CCCCCEEEEEECCCCEEEEEECCCCeEEEEEe
Confidence 0 000 0 0 01 12335666777788999999999998766654
Q ss_pred cCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-E
Q 017296 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-I 268 (374)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~ 268 (374)
.+. .... ..+.+ .+...+++++.|+.|++||+++ ......+..+ ..+.++.|++++..+ +
T Consensus 114 ~~~-----------~~~~---~~~s~---dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 114 TGK-----------SPLG---LALSP---DGKKLYVTNNGDKTVSVINTVT-KAVINTVSVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp CSS-----------SEEE---EEECT---TSSEEEEEETTTTEEEEEETTT-TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred CCC-----------Ccce---EEECC---CCCEEEEEeCCCCEEEEEECCC-CcEEEEEecC-CCcceEEECCCCCEEEE
Confidence 321 1111 12333 2333347888999999999976 3445555544 456899999998877 5
Q ss_pred EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe---CCCeEEEEEccCCeEEEEecccCCceEE
Q 017296 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---WDRRVRIYNYRKGSALAILKYHHATCNA 345 (374)
Q Consensus 269 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 345 (374)
+++.|+.|++||++.. ... .... +...+.+++|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+
T Consensus 175 ~~~~~~~v~~~d~~~~--~~~--~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 248 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTN--SVI--DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAG 248 (391)
T ss_dssp EETTTTEEEEEETTTT--EEE--EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEE
T ss_pred EeCCCCEEEEEECCCC--eEE--EEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccE
Confidence 7788999999999754 222 1222 234688999999999988887 68999999999999888888765 5789
Q ss_pred EEEeCCCCEE-EEEeCCCcEEEecCCCC
Q 017296 346 VSFSSDCKLM-ASASEDSTVALWELYPP 372 (374)
Q Consensus 346 v~~sp~~~~l-as~s~D~~v~~W~~~~~ 372 (374)
++|+|+|++| ++++.|+.|++||+..+
T Consensus 249 ~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 249 IAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9999999977 77899999999998643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-26 Score=212.42 Aligned_cols=189 Identities=11% Similarity=0.105 Sum_probs=145.7
Q ss_pred ceEEEcccCCCeEEEEecC--CCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 162 KYMAVAGEQLSEVEIWDLN--TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
++++++++.|+.|++||+. +++.+..+.... ......+ ..+.++ ...+++|+.||.|++||+.
T Consensus 115 ~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~~~~v~~---~~~sp~----~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 115 SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--------FSKRPNA---ISIAED----DTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--------CSSCEEE---EEECTT----SSEEEEEETTSEEEEEETT
T ss_pred CEEEEEECCCCeEEEEECcCCCCceeeeeeccc--------CCCCceE---EEEcCC----CCEEEEEeCCCcEEEEecC
Confidence 4556777788999999998 777665553210 0011111 124332 2368899999999999997
Q ss_pred CCCC---ceeeeecCccCeEEEEEecC---CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE
Q 017296 240 NPGI---PLTAMKVHLEPVLCLSIDES---CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 240 ~~~~---~~~~~~~h~~~v~~~~~~~~---~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 313 (374)
.... +...+.+|..+|.++.|+|+ +..+++++.|++|++||++...... .....|...+.+++|+ ++++|
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD---KWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE---EECCCCSSCEEEEEEC-STTEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee---eeecCCCCceEEEEEC-CCCEE
Confidence 6432 23367889999999999999 8899999999999999997543221 1234567789999999 99999
Q ss_pred EEEeCCCeEEEEEccCCeEEEEeccc-------------------------CCceEEEEEeCCCCEEEEEe-CCCcEEEe
Q 017296 314 ATAGWDRRVRIYNYRKGSALAILKYH-------------------------HATCNAVSFSSDCKLMASAS-EDSTVALW 367 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~~~~~~~~~h-------------------------~~~v~~v~~sp~~~~las~s-~D~~v~~W 367 (374)
++++.|++|++||+.+++.+..+..+ ...|.+++|+|++++|++++ .|+.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 99999999999999999988877633 35789999999999999998 99999999
Q ss_pred cC
Q 017296 368 EL 369 (374)
Q Consensus 368 ~~ 369 (374)
++
T Consensus 336 ~~ 337 (450)
T 2vdu_B 336 EM 337 (450)
T ss_dssp EE
T ss_pred Ee
Confidence 98
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=215.98 Aligned_cols=250 Identities=13% Similarity=0.129 Sum_probs=168.9
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..|.+++|+|. +.+.|++|+.||+|++||+.++... .......|.. ...+..
T Consensus 120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~-----~~~~~~gH~~-----------------~V~~l~----- 171 (435)
T 4e54_B 120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKP-----TFIKGIGAGG-----------------SITGLK----- 171 (435)
T ss_dssp SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCC-----EEECCCSSSC-----------------CCCEEE-----
T ss_pred CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCce-----eEEEccCCCC-----------------CEEEEE-----
Confidence 35899999885 3478999999999999999876321 0000000100 000001
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
+.+.++. ++++++.|++|++||++++......... .......++ .+.++ ..
T Consensus 172 -------------f~p~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~----~~ 222 (435)
T 4e54_B 172 -------------FNPLNTN-QFYASSMEGTTRLQDFKGNILRVFASSD--------TINIWFCSL---DVSAS----SR 222 (435)
T ss_dssp -------------ECSSCTT-EEEEECSSSCEEEEETTSCEEEEEECCS--------SCSCCCCCE---EEETT----TT
T ss_pred -------------EeCCCCC-EEEEEeCCCEEEEeeccCCceeEEeccC--------CCCccEEEE---EECCC----CC
Confidence 1111223 4567888999999999876533222211 011111111 23332 23
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.+++|+.||.|++||++. ..+..+.+|..+|.+++|+|.+. .+++++.|++|++||++.......+ .....|...|
T Consensus 223 ~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-~~~~~h~~~v 299 (435)
T 4e54_B 223 MVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-LYSLPHRHPV 299 (435)
T ss_dssp EEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-SBCCBCSSCE
T ss_pred EEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-EEeeeccccc
Confidence 689999999999999963 45667889999999999998876 5678999999999999754332221 1123466789
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCC------ceEEEEEeCCCCEEEEEe------------CCCc
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA------TCNAVSFSSDCKLMASAS------------EDST 363 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~------~v~~v~~sp~~~~las~s------------~D~~ 363 (374)
.+++|+|++++|++++.||+|++||+.+++....+..|.. .+....|+|++.++++++ .+++
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 9999999999999999999999999999887777766653 234456777777666653 3468
Q ss_pred EEEecCCCC
Q 017296 364 VALWELYPP 372 (374)
Q Consensus 364 v~~W~~~~~ 372 (374)
|++|+...+
T Consensus 380 i~iwd~~~g 388 (435)
T 4e54_B 380 IDVFDGNSG 388 (435)
T ss_dssp EEEECSSSC
T ss_pred EEEEECCCC
Confidence 999998543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=203.93 Aligned_cols=252 Identities=16% Similarity=0.203 Sum_probs=175.9
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
...+.+|...|++++|+|++++|++++.|+.|++||+.+++.+. +..|. ..+.++.+.+.++++.+++++.|++|++
T Consensus 79 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHD--APVKTIHWIKAPNYSCVMTGSWDKTLKF 155 (368)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECS--SCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-ecccc--CceEEEEEEeCCCCCEEEEccCCCcEEE
Confidence 37889999999999999999999999999999999998887654 34454 4577888843346788999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
||+++++... .+.... ... ... ... . .++++..
T Consensus 156 wd~~~~~~~~----~~~~~~-~~~----------------------~~~------------------~~~-~-~~~~~~~ 188 (368)
T 3mmy_A 156 WDTRSSNPMM----VLQLPE-RCY----------------------CAD------------------VIY-P-MAVVATA 188 (368)
T ss_dssp ECSSCSSCSE----EEECSS-CEE----------------------EEE------------------EET-T-EEEEEEG
T ss_pred EECCCCcEEE----EEecCC-Cce----------------------EEE------------------ecC-C-eeEEEeC
Confidence 9998864321 111000 000 000 000 1 2344555
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC--Cceeee
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAM 248 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~--~~~~~~ 248 (374)
++.+++||++............ . .....+.. +..........+++++.||.|++||++... .....+
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~------~--~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESP------L--KHQHRCVA---IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCS------C--SSCEEEEE---EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred CCcEEEEEeccccchhhhcccc------c--cCCCceEE---EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 7899999998865433322110 0 11112222 222222222348899999999999997642 345566
Q ss_pred ecCcc------------CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE
Q 017296 249 KVHLE------------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 249 ~~h~~------------~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 316 (374)
.+|.. +|.+++|+|++..+++++.||.|++||++.. .. ...+..|...+.+++|+|++++|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR--TK--LKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT--EE--EEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC--cE--EEEecCCCCCceEEEECCCCCeEEEE
Confidence 77766 7999999999999999999999999999743 32 23455677789999999999999999
Q ss_pred eCCCeEEEEEc
Q 017296 317 GWDRRVRIYNY 327 (374)
Q Consensus 317 ~~dg~v~iwd~ 327 (374)
+.|+..+.|++
T Consensus 334 s~d~~~~~~~~ 344 (368)
T 3mmy_A 334 SSYDWSKGHEF 344 (368)
T ss_dssp ECCCSTTCGGG
T ss_pred ecccccccccc
Confidence 99886665554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=205.20 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=161.7
Q ss_pred EEeecCCCceeEEEEeCCCCEEE-----------EecCCCcEEEEeCcccceeeee----e---eeeceeeeEEeccCCc
Q 017296 12 AVLRGHRASVTDVCFHQTKPILF-----------AGTTGGELRIWDTVQHRTVSSS----W---VHSAAHGIVSVATGPS 73 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~-----------s~s~D~~v~vWd~~~~~~~~~~----~---~~~~~~~~~~~~~~~~ 73 (374)
..|.+|...|.++++++ +.++ +++.|+++++|++......... . .+.....+.+++|+|
T Consensus 67 ~~l~~~~~~v~s~~~~~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp- 143 (365)
T 4h5i_A 67 FALEDNDDSPTAIDASK--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR- 143 (365)
T ss_dssp EECCTTSCCCCEEEEET--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-
T ss_pred EEccCCCCceEEEEeCC--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-
Confidence 45789999999887754 4454 4567888999997654321111 1 111222366788887
Q ss_pred cccceee--eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCC
Q 017296 74 IGLNKVI--SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (374)
Q Consensus 74 ~~~~~l~--s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (374)
|+++++ +++.|++||+||+++++... .+. + ... ....
T Consensus 144 -Dg~~la~as~~~d~~i~iwd~~~~~~~~----~~~----~--------~~~---------V~~v--------------- 182 (365)
T 4h5i_A 144 -EGTVAAIASSKVPAIMRIIDPSDLTEKF----EIE----T--------RGE---------VKDL--------------- 182 (365)
T ss_dssp -TSSCEEEEESCSSCEEEEEETTTTEEEE----EEE----C--------SSC---------CCEE---------------
T ss_pred -CCCEEEEEECCCCCEEEEeECCCCcEEE----EeC----C--------CCc---------eEEE---------------
Confidence 667654 66689999999998763210 000 0 000 0000
Q ss_pred CCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC
Q 017296 152 SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (374)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg 231 (374)
.+.+ ++++++ +++ ++.+++|+..+++.+...... .+ ...+....|.++ + ..+++++.|+
T Consensus 183 ---~fsp-dg~~l~-s~s-~~~~~~~~~~~~~~~~~~~~~------~~-----~~~v~~v~fspd---g-~~l~~~s~d~ 241 (365)
T 4h5i_A 183 ---HFST-DGKVVA-YIT-GSSLEVISTVTGSCIARKTDF------DK-----NWSLSKINFIAD---D-TVLIAASLKK 241 (365)
T ss_dssp ---EECT-TSSEEE-EEC-SSCEEEEETTTCCEEEEECCC------CT-----TEEEEEEEEEET---T-EEEEEEEESS
T ss_pred ---EEcc-CCceEE-ecc-ceeEEEEEeccCcceeeeecC------CC-----CCCEEEEEEcCC---C-CEEEEEecCC
Confidence 1112 234443 444 456788888877755433211 00 111112234443 2 3578888777
Q ss_pred ----cEEEEeccCCCC---ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 232 ----SILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 232 ----~i~iwdl~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
.+++||+..... ....+.+|..+|++++|+|++..+++|+.|++|+|||++.. ++. ...+..|...|+++
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~--~~~-~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL--SMS-KIFKQAHSFAITEV 318 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEE-EEETTSSSSCEEEE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC--cEE-EEecCcccCCEEEE
Confidence 688899865322 13456789999999999999999999999999999999643 332 22246788899999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
+||||+++||||+.|++|||||+..
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999954
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=204.94 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=165.7
Q ss_pred ecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCc-cccceeeeccccCeEEEEe
Q 017296 15 RGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 15 ~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~D~~vrvwd 92 (374)
.+|...|++++|+| ++.+|++++.|+.|++||+.+++.+..+. +. ..+.++.+.+. .++..+++++.|+.|++||
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 36999999999999 77899999999999999999888766654 22 23555555542 2345899999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
+.+++... .+........ +.. + .++..+++++++.|+
T Consensus 173 ~~~~~~~~----~~~~~~~~v~--------------------~~~------------------~-~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 173 LKSGSCSH----ILQGHRQEIL--------------------AVS------------------W-SPRYDYILATASADS 209 (408)
T ss_dssp SSSSCCCE----EECCCCSCEE--------------------EEE------------------E-CSSCTTEEEEEETTS
T ss_pred CCCcceee----eecCCCCcEE--------------------EEE------------------E-CCCCCcEEEEEcCCC
Confidence 98764311 1110000000 000 1 112244567788899
Q ss_pred eEEEEecCCCc-eeEEeccCccCC--CCC---cCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 173 EVEIWDLNTAE-RCTRLHQNSCGG--SPN---FSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 173 ~i~vWd~~~~~-~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.|++||++++. .+..+....... ... ........+ ..+.++ ...+++++.||.|++||+++... ..
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~-~~ 281 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG---LCFTSD----GLHLLTVGTDNRMRLWNSSNGEN-TL 281 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE---EEECTT----SSEEEEEETTSCEEEEETTTCCB-CC
T ss_pred cEEEEECCCCCcccccccccccccceeeccccccccCceeE---EEEcCC----CCEEEEecCCCeEEEEECCCCcc-ce
Confidence 99999999876 333332211100 000 011111111 234332 23689999999999999986432 22
Q ss_pred eeecC-----ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 247 AMKVH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 247 ~~~~h-----~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
.+..+ ...+...........++.++.|+.|++||+.... . ...+..|...|.+++|+|++++|++++.||.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 357 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE--Q--ITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC--E--EEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc--c--eeeeccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence 22111 1122222222334457888999999999997543 2 2345567788999999999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 322 VRIYNYRKGSALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
|++||+.+++.+.....+.. ...+.| +.....+++.|+.+++|+.
T Consensus 358 i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 358 ILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEEEECC-----------------------------------------
T ss_pred EEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCC
Confidence 99999999887765443332 233444 3345667889999999976
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-25 Score=195.52 Aligned_cols=243 Identities=18% Similarity=0.222 Sum_probs=174.5
Q ss_pred ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccC
Q 017296 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN 130 (374)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (374)
+....+.+|.. .+.++++ + +++++++++.|++|++||+.+++.. ...........
T Consensus 9 ~~~~~l~~h~~--~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~----~~~~~~~~~v~---------------- 63 (313)
T 3odt_A 9 QLSATLKGHDQ--DVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLG----TVVYTGQGFLN---------------- 63 (313)
T ss_dssp EEEEEECCCSS--CEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEE----EEEEECSSCEE----------------
T ss_pred HHHHHhhCCCC--CcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEE----EEeecCCccEE----------------
Confidence 44556667753 4778877 4 5678999999999999999765311 00000000000
Q ss_pred CCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCc---eeEEeccCccCCCCCcCCCCCcce
Q 017296 131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMC 207 (374)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 207 (374)
+.. +.+ +.. ++++++.|+.+++|++.... ....+..+ .....+
T Consensus 64 ----~~~------------------~~~-~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~----------~~~i~~ 109 (313)
T 3odt_A 64 ----SVC------------------YDS-EKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIGH----------QGNVCS 109 (313)
T ss_dssp ----EEE------------------EET-TTT-EEEEEETTSCEEEEETTCCTTSCC-CEECCC----------SSCEEE
T ss_pred ----EEE------------------ECC-CCC-EEEEecCCCeEEEEEeeecCCCCcccchhhc----------ccCEEE
Confidence 000 011 122 45567778999999987643 23333211 111112
Q ss_pred eEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC
Q 017296 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
+ .+. + ..+++++.||.|++||. ......+..|..++.++.+.+ ++..+++++.|+.|++||..
T Consensus 110 ~---~~~-----~-~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---- 173 (313)
T 3odt_A 110 L---SFQ-----D-GVVISGSWDKTAKVWKE---GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---- 173 (313)
T ss_dssp E---EEE-----T-TEEEEEETTSEEEEEET---TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----
T ss_pred E---Eec-----C-CEEEEEeCCCCEEEEcC---CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----
Confidence 1 121 1 26899999999999993 456777888999999999977 88889999999999999943
Q ss_pred eEEEEEeeec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 287 SCVIKKEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 287 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
... ..+.. +...+.+++|+|+++ +++++.||.|++||+.+++.+..+.+|...|.+++|+|++ .|++++.|+.|+
T Consensus 174 ~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 174 KVI--KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp EEE--EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred ceE--EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence 222 22333 667899999999998 8899999999999999999999999999999999999999 689999999999
Q ss_pred EecCCCC
Q 017296 366 LWELYPP 372 (374)
Q Consensus 366 ~W~~~~~ 372 (374)
+|++..+
T Consensus 250 iwd~~~~ 256 (313)
T 3odt_A 250 IWSKENG 256 (313)
T ss_dssp EECTTTC
T ss_pred EEECCCC
Confidence 9998654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=205.67 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=177.3
Q ss_pred ceeEEEEeCCCCE-EEEecCCCcEEEEeCcccc----eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 20 SVTDVCFHQTKPI-LFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 20 ~V~~l~~~~~~~~-l~s~s~D~~v~vWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
....++++|+... +++++.||.|+|||+.... .+..+.+|. ..+.++++++. +++.|++|+.|++|++||+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~--~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT--APVLDIAWCPH-NDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS--SCEEEEEECTT-CTTEEEEEETTSEEEEEECC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC--CCEEEEEeCCC-CCCEEEEEeCCCeEEEEEcc
Confidence 4456888887754 5568999999999985532 233455564 45888888873 45799999999999999998
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
++........ ......+. .+.|
T Consensus 113 ~~~~~~~~~~---------------------------------------------------------~~~~~~~h-~~~v 134 (402)
T 2aq5_A 113 DGGLVLPLRE---------------------------------------------------------PVITLEGH-TKRV 134 (402)
T ss_dssp TTCCSSCBCS---------------------------------------------------------CSEEEECC-SSCE
T ss_pred CCCCccccCC---------------------------------------------------------ceEEecCC-CCeE
Confidence 7632110000 00000000 0000
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee--ecCc
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM--KVHL 252 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~--~~h~ 252 (374)
.+ ..+.++ +...+++++.||.|++||+++ ......+ ..|.
T Consensus 135 -------------------------------~~---~~~~p~---~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 176 (402)
T 2aq5_A 135 -------------------------------GI---VAWHPT---AQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHP 176 (402)
T ss_dssp -------------------------------EE---EEECSS---BTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCC
T ss_pred -------------------------------EE---EEECcC---CCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCC
Confidence 00 012221 212588999999999999986 4456666 7899
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee-ecCCC-CeEEEEECCCCCEEEEE---eCCCeEEEEEc
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI-NLERP-GISGTSIRPDSKIAATA---GWDRRVRIYNY 327 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~~~~l~s~---~~dg~v~iwd~ 327 (374)
..|.+++|++++..+++++.|+.|++||++.. ... ..+ ..|.. .+..++|+|++++|++| +.|+.|++||+
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVV--AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEE--EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCC--cee--eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 99999999999999999999999999999753 222 222 34443 37899999999999999 79999999999
Q ss_pred cCCeE-EEEec-ccCCceEEEEEeCCCCEEE-EEeCCCcEEEecCCCC
Q 017296 328 RKGSA-LAILK-YHHATCNAVSFSSDCKLMA-SASEDSTVALWELYPP 372 (374)
Q Consensus 328 ~~~~~-~~~~~-~h~~~v~~v~~sp~~~~la-s~s~D~~v~~W~~~~~ 372 (374)
.+++. +.... .|...+.+++|+|++++|+ +++.|+.|++|++..+
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 88654 32222 4778899999999999886 5568999999998654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-25 Score=199.11 Aligned_cols=248 Identities=16% Similarity=0.185 Sum_probs=180.8
Q ss_pred eeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCc
Q 017296 55 SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD 134 (374)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (374)
.+.+|. ..+.++++++ ++++|++++.|++|++||+.+++... .+........
T Consensus 27 ~l~~h~--~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~h~~~v~-------------------- 78 (369)
T 3zwl_B 27 KLTGHE--RPLTQVKYNK--EGDLLFSCSKDSSASVWYSLNGERLG----TLDGHTGTIW-------------------- 78 (369)
T ss_dssp EEECCS--SCEEEEEECT--TSCEEEEEESSSCEEEEETTTCCEEE----EECCCSSCEE--------------------
T ss_pred EEEEee--ceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCCchhhh----hhhhcCCcEE--------------------
Confidence 344554 4588888987 67899999999999999998764210 1100000000
Q ss_pred ccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeee
Q 017296 135 CYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYL 214 (374)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (374)
+.. +.+ +.. ++++++.|+.|++||+++++.+..+... ....+ ..+.
T Consensus 79 ~~~------------------~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~~v~~---~~~~ 124 (369)
T 3zwl_B 79 SID------------------VDC-FTK-YCVTGSADYSIKLWDVSNGQCVATWKSP-----------VPVKR---VEFS 124 (369)
T ss_dssp EEE------------------ECT-TSS-EEEEEETTTEEEEEETTTCCEEEEEECS-----------SCEEE---EEEC
T ss_pred EEE------------------EcC-CCC-EEEEEeCCCeEEEEECCCCcEEEEeecC-----------CCeEE---EEEc
Confidence 000 111 223 3456677899999999999877766421 11111 1233
Q ss_pred cCCCCCceEEEEEecC-----CcEEEEeccCCCC----------ceeeeecCcc--CeEEEEEecCCCceEEEecCCeEE
Q 017296 215 PSKSQGFVNVLAGYED-----GSILVWDIRNPGI----------PLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIV 277 (374)
Q Consensus 215 ~~~~~~~~~~~~gs~d-----g~i~iwdl~~~~~----------~~~~~~~h~~--~v~~~~~~~~~~~~~s~s~D~~i~ 277 (374)
++ ...+++++.+ |.|++||++.... +...+..|.. .+.++++++++..+++++.|+.|+
T Consensus 125 ~~----~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 200 (369)
T 3zwl_B 125 PC----GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200 (369)
T ss_dssp TT----SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEE
T ss_pred cC----CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEE
Confidence 32 2358888888 9999999975432 3334455665 999999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 278 LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 278 lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
+||++.. .. ....+..+...+.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+..++|+|+++++++
T Consensus 201 i~d~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 201 KYDVSNN-YE--YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp EEETTTT-TE--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEECCCC-cE--eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEE
Confidence 9999752 12 223455577789999999999999999999999999999999888887 7889999999999999999
Q ss_pred EeCCC--------------cEEEecCCCC
Q 017296 358 ASEDS--------------TVALWELYPP 372 (374)
Q Consensus 358 ~s~D~--------------~v~~W~~~~~ 372 (374)
++.++ .+++|++..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp EECCC-------------CEEEEEETTTC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCC
Confidence 99998 8999998643
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-24 Score=199.02 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=198.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~ 86 (374)
+++..+.+|.. +.+++|+|++++| ++++.|++|++||+.+++.+..+..+. .+.++++++ +++++ ++++.|+
T Consensus 23 ~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v~~~~~sp--dg~~l~~~~~~~~ 96 (391)
T 1l0q_A 23 KVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SPQGVAVSP--DGKQVYVTNMASS 96 (391)
T ss_dssp EEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEETTTT
T ss_pred eEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---CccceEECC--CCCEEEEEECCCC
Confidence 55667777765 8999999999876 788899999999999988877665443 577888887 45655 5667789
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+|++||+.+++... .+.... .. .. + .+ .++.+.+++
T Consensus 97 ~v~v~d~~~~~~~~----~~~~~~-~~--------------------~~--------~----------~~-s~dg~~l~~ 132 (391)
T 1l0q_A 97 TLSVIDTTSNTVAG----TVKTGK-SP--------------------LG--------L----------AL-SPDGKKLYV 132 (391)
T ss_dssp EEEEEETTTTEEEE----EEECSS-SE--------------------EE--------E----------EE-CTTSSEEEE
T ss_pred EEEEEECCCCeEEE----EEeCCC-Cc--------------------ce--------E----------EE-CCCCCEEEE
Confidence 99999998763210 000000 00 00 0 01 123345666
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
++..++.|++||+++++....+..+. .... ..+.+ .+...+++++.++.|++||++.. ....
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~-----------~~~~---~~~~~---dg~~l~~~~~~~~~v~~~d~~~~-~~~~ 194 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR-----------SPKG---IAVTP---DGTKVYVANFDSMSISVIDTVTN-SVID 194 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS-----------SEEE---EEECT---TSSEEEEEETTTTEEEEEETTTT-EEEE
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC-----------Ccce---EEECC---CCCEEEEEeCCCCEEEEEECCCC-eEEE
Confidence 77888999999999988766654321 1111 12333 23333467889999999999763 3333
Q ss_pred eeecCccCeEEEEEecCCCceEEEe---cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE-EEEeCCCeE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA-ATAGWDRRV 322 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~v 322 (374)
.+ .+...+.++.|++++..+++++ .++.|++||++.. ... ..+..+ ..+.+++|+|+++++ ++++.|++|
T Consensus 195 ~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--~~~--~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v 268 (391)
T 1l0q_A 195 TV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KIT--ARIPVG-PDPAGIAVTPDGKKVYVALSFXNTV 268 (391)
T ss_dssp EE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEE--EEEECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC--eEE--EEEecC-CCccEEEEccCCCEEEEEcCCCCEE
Confidence 33 3566889999999998888887 6899999999654 222 223333 357889999999977 677889999
Q ss_pred EEEEccCCeEEEEecccCCceE---EEE------------EeCCC----------CEEEEEeCCCcEEEecCCCC
Q 017296 323 RIYNYRKGSALAILKYHHATCN---AVS------------FSSDC----------KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~---~v~------------~sp~~----------~~las~s~D~~v~~W~~~~~ 372 (374)
++||+.+++.+..+..|..+.. .+. |+.+. ..+.+.+.|.++++|++.++
T Consensus 269 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 269 SVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp EEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred EEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 9999999999888877654321 122 33221 34666788999999998654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=200.86 Aligned_cols=246 Identities=17% Similarity=0.186 Sum_probs=171.8
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+.++++++ +++.|++++.|++|++||+.++.. .........|.. ...+..+
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~~-----------------~v~~~~~---- 64 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAK----NVDLLQSLRYKH-----------------PLLCCNF---- 64 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTT----EEEEEEEEECSS-----------------CEEEEEE----
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCc----cccceeeeecCC-----------------ceEEEEE----
Confidence 3588888887 568999999999999999987631 000100000000 0000000
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEec-CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCc
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (374)
. ++..+++++++.|+.|++||+ .+++. ..+... .+ .....++ .+.+ .
T Consensus 65 --------------~-~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~------~~--~~~v~~l---~~~~-----~ 112 (342)
T 1yfq_A 65 --------------I-DNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNN------EA--NLGICRI---CKYG-----D 112 (342)
T ss_dssp --------------E-ESSSEEEEEEETTSCEEEECSSSSSSE-EECBSC------CC--CSCEEEE---EEET-----T
T ss_pred --------------C-CCCCcEEEEEcCCCeEEEEEeccCCce-Eecccc------CC--CCceEEE---EeCC-----C
Confidence 0 122314566778899999999 87764 233210 01 1111222 2332 2
Q ss_pred eEEEEEecCCcEEEEeccCC--------CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC-CCCeEEEEE
Q 017296 222 VNVLAGYEDGSILVWDIRNP--------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH-STGSCVIKK 292 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~-~~~~~~~~~ 292 (374)
..+++++.||.|++||++.. ..++..+. |...+.++.++++. +++++.|+.|++||++. ...... .
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~--~ 187 (342)
T 1yfq_A 113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT--I 187 (342)
T ss_dssp TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE--E
T ss_pred CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce--e
Confidence 26899999999999999741 22344444 88999999999876 89999999999999976 332211 1
Q ss_pred eeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCC------eEEEEecccCC---------ceEEEEEeCCCCEEE
Q 017296 293 EINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKG------SALAILKYHHA---------TCNAVSFSSDCKLMA 356 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~h~~---------~v~~v~~sp~~~~la 356 (374)
....+...+.+++|+| +++++++++.||.|++|++... +....+..|.. .|.+++|+|++++|+
T Consensus 188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 267 (342)
T 1yfq_A 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267 (342)
T ss_dssp EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence 2234556799999999 9999999999999999999876 67778888865 999999999999999
Q ss_pred EEeCCCcEEEecCCCC
Q 017296 357 SASEDSTVALWELYPP 372 (374)
Q Consensus 357 s~s~D~~v~~W~~~~~ 372 (374)
+++.|+.|++||+..+
T Consensus 268 ~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 268 TAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEETTSCEEEEETTTT
T ss_pred EecCCceEEEEcCccH
Confidence 9999999999998643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=217.78 Aligned_cols=258 Identities=9% Similarity=0.032 Sum_probs=174.3
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeec---eeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA---AHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
+|.+.|++++|+|+|.+|++++.||+|++||... .+..+. |.. ...+.+++|+| +++.|++|+.||+|++||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEEEE
Confidence 6789999999999999999999999999999543 444444 431 12478899988 789999999999999999
Q ss_pred cCCCCCCCCCc-eeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 93 IENGGLSSNPS-LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
+.++.... +. +.+.+...+. ..+. ..+... .+.+++ +++++.|
T Consensus 158 ~~~~~l~~-~~~i~l~ti~~~~------~gh~-----------------~~V~sV--------awSPdg----Laass~D 201 (588)
T 2j04_A 158 IRKNSENT-PEFYFESSIRLSD------AGSK-----------------DWVTHI--------VWYEDV----LVAALSN 201 (588)
T ss_dssp CCCCTTTC-CCCEEEEEEECSC------TTCC-----------------CCEEEE--------EEETTE----EEEEETT
T ss_pred CCCCcccc-ccceeeeeeeccc------cccc-----------------ccEEEE--------EEcCCc----EEEEeCC
Confidence 98764211 11 0111100000 0000 000000 111222 3455668
Q ss_pred CeEEEEecCCCcee---EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 172 SEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 172 ~~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
++|++||+.+++.. .++... +.. ....+ .|. + ..+++++ +++|++||+... ......
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~-------h~~--~V~sv---aFs-----g-~~LASa~-~~tIkLWd~~~~-~~~~~~ 261 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNA-------SRR--KITDL---KIV-----D-YKVVLTC-PGYVHKIDLKNY-SISSLK 261 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECC-------CSS--CCCCE---EEE-----T-TEEEEEC-SSEEEEEETTTT-EEEEEE
T ss_pred CeEEEEECCCCccccceeeeccc-------ccC--cEEEE---EEE-----C-CEEEEEe-CCeEEEEECCCC-eEEEEE
Confidence 99999999887632 233211 100 11111 232 1 2577776 699999999753 221223
Q ss_pred ecCccCeEEEEE--ecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 249 KVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 249 ~~h~~~v~~~~~--~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.+|...+..++| ++++..+++++.||+ ++|.++ .++|+||+.+++++ |+++++|+
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------------~~~~spd~~l~a~~--d~~v~lW~ 318 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------------ELHVTADNIIAPYL--EKKFKKWS 318 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS--------------------SEEEECCCSSHHHH--HHHHHHTT
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--------------------cEEECCCceEEEEc--CCEEEEEE
Confidence 389999999999 999888999999999 999874 25589999888765 99999998
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
...+. +..+.+ ...|.+++|||||+.+|+++
T Consensus 319 ~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 319 TIWNE-FNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp TTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred CCCCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 75444 444544 66799999999999999986
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=192.88 Aligned_cols=148 Identities=21% Similarity=0.291 Sum_probs=126.0
Q ss_pred EEEEEecCCcEEEEeccCCC-CceeeeecCccCeEEEEEecC--CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.+++|+.||.|++||++... .....+..|..+|.++.|+++ +..+++++.|+.|++||++....... ..+..|..
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~ 148 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAI 148 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE--EEEECCTT
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee--EEecCCCC
Confidence 58899999999999998642 145667789999999999988 88899999999999999976533222 23455777
Q ss_pred CeEEEEECC-------------CCCEEEEEeCCCeEEEEEccCCe----EEEEecccCCceEEEEEeCC---CCEEEEEe
Q 017296 300 GISGTSIRP-------------DSKIAATAGWDRRVRIYNYRKGS----ALAILKYHHATCNAVSFSSD---CKLMASAS 359 (374)
Q Consensus 300 ~v~~~~~sp-------------~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~v~~sp~---~~~las~s 359 (374)
.+.+++|+| ++++|++++.||+|++||+.+++ ....+.+|...|.+++|+|+ +++|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 899999999 69999999999999999998764 45678889999999999999 89999999
Q ss_pred CCCcEEEecCCCC
Q 017296 360 EDSTVALWELYPP 372 (374)
Q Consensus 360 ~D~~v~~W~~~~~ 372 (374)
.|+.|++|++..+
T Consensus 229 ~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 229 QDRTCIIWTQDNE 241 (379)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCEEEEEeCCCC
Confidence 9999999998653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=192.26 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=63.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeee-----ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++|+.|++|++||..+ +..+..+ .+|...+.+..++ +..+++++.|++|+|||+.... +. ..+..|.
T Consensus 253 laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk--~l--~tL~gH~ 325 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQ--CT--ALLPPVS 325 (356)
T ss_dssp -----CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCS--EE--EEECCC-
T ss_pred eeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCc--EE--EEecCCC
Confidence 55677777777777754 2222222 3555554444443 5567999999999999997543 33 2344454
Q ss_pred CCe-EEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 299 PGI-SGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 299 ~~v-~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
..+ ..++||||+++|++|+.|++|||||+
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 444 46899999999999999999999985
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=194.27 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=141.4
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP- 241 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~- 241 (374)
.++++|+.|++|++||+.+++.+..+.... ...+ .+.+ .+++++.|++|++|+....
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~----------v~~~-----~~~~-------~~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTITTPN----------PRTG-----GEHP-------AIISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEEEEC----------CCTT-----CCCC-------SEEEECSTTEEEEEETTTEE
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEecCC----------ceee-----eeCC-------ceEEecCCCeEEEEEccCce
Confidence 467788899999999999998776664210 0000 0111 1789999999999976521
Q ss_pred -------CCceeeee-cCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 242 -------GIPLTAMK-VHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 242 -------~~~~~~~~-~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
...+..+. .|..+|.++.++| ++..+++++.|++|++||++... .... ....+...+.+++|+|+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~-~~~~~~~~i~~~~~~pdg~ 183 (343)
T 3lrv_A 107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--QYIV-HSAKSDVEYSSGVLHKDSL 183 (343)
T ss_dssp EEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC--EEEE-ECCCSSCCCCEEEECTTSC
T ss_pred EEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--EEEE-EecCCCCceEEEEECCCCC
Confidence 11122232 5668999999999 99999999999999999997543 2211 1122344699999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEE-EEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 312 IAATAGWDRRVRIYNYRKGSAL-AILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|++|+.||+|++||+++++.+ ..+.. |.+.|.+++|+|+|++|++++ |++|++||+..+
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC
Confidence 9999999999999999999877 78888 999999999999999999999 559999998644
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-23 Score=184.91 Aligned_cols=280 Identities=15% Similarity=0.156 Sum_probs=156.4
Q ss_pred CCeEEeecCCCceeEEEEeC--CCCEEEEecCCCcEEEEeCccc---------ceeeeeeeeeceeeeEEeccCCccccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH---------RTVSSSWVHSAAHGIVSVATGPSIGLN 77 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (374)
++...+.+|..+|++|+|+| ++.+|++|+.|++|++||+.++ +.+..+..|. ..+.++++++...++
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 125 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLGL 125 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGCS
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCCc
Confidence 46778899999999999998 5999999999999999999876 3355555554 457888888742268
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.+++++.|++|++||+++++.......... ........ . .......+..+.+.
T Consensus 126 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~--~----~~~~~~~~~~~~p~---------------- 178 (351)
T 3f3f_A 126 KLACLGNDGILRLYDALEPSDLRSWTLTSE-----MKVLSIPP--A----NHLQSDFCLSWCPS---------------- 178 (351)
T ss_dssp EEEEEETTCEEEEEECSSTTCTTCCEEEEE-----EESCSCCC--S----SCSCCCEEEEECCC----------------
T ss_pred EEEEecCCCcEEEecCCChHHhcccccccc-----cccccccc--C----CcccceeEEEeccC----------------
Confidence 899999999999999988754321110000 00000000 0 00000000000000
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCce--eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEE
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV 235 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~i 235 (374)
..+.. ++++++.++.+.+|+...++. ...+..+ .....+ ..+.++.......+++|+.||.|++
T Consensus 179 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h----------~~~i~~---~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 179 RFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGH----------KSLIRS---ISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCC----------CSCEEE---EEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCC----------CcceeE---EEECCCCCCcceEEEEEcCCCeEEE
Confidence 01123 455666778888888777654 2332211 111112 2344432111147999999999999
Q ss_pred EeccCCCCceeeeecCccCeEEEEEecCCCceE----EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 236 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~----s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
||++...... ....+..........+...... .+.....+.+|+.. .......+..|...|.+++|+|+++
T Consensus 245 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~ 319 (351)
T 3f3f_A 245 FKITEKLSPL-ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL----QVELLSEHDDHNGEVWSVSWNLTGT 319 (351)
T ss_dssp EEEEECC----------------------------------------CCSE----EEEEEEEECTTSSCEEEEEECSSSC
T ss_pred EeCCCCcCcc-ccCCcccceeccCCCcccccccccccccccceeeeecccc----cccEEEEEecccccEEEEEEcCCCC
Confidence 9997643222 1222222222222222222222 22334444555332 2233445667788899999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 312 IAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
+|++++.||+|++||+.+++.+..+
T Consensus 320 ~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 320 ILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEecCCCcEEEEecCcCcchhhe
Confidence 9999999999999999987655443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=189.49 Aligned_cols=220 Identities=19% Similarity=0.273 Sum_probs=161.3
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccce-------eeeeeeeeceeeeEEeccCCcccccee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT-------VSSSWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
.+++..+.+|...|++|+|+|++. +|++|+.||+|++||+.++.. ...+..|. ..+.++++++. +.+.+
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~~p~-~~~~l 247 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT--AVVEDVAWHLL-HESLF 247 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS--SCEEEEEECSS-CTTEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC--CCEeeeEEeCC-CCCEE
Confidence 478899999999999999999988 999999999999999976322 22333443 34778888773 34789
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
++++.|++|++||++++.... +...
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~-~~~~------------------------------------------------------ 272 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSK-PSHT------------------------------------------------------ 272 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSS-CSEE------------------------------------------------------
T ss_pred EEEeCCCeEEEEECCCCCCCc-ceeE------------------------------------------------------
Confidence 999999999999998652100 0000
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+ .+ ....| . + ..+.+. +...+++|+.||.|++||++
T Consensus 273 -----~-~~-~~~~v-----------~--------------------~---i~~~p~---~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 273 -----V-DA-HTAEV-----------N--------------------C---LSFNPY---SEFILATGSADKTVALWDLR 308 (430)
T ss_dssp -----E-EC-CSSCE-----------E--------------------E---EEECSS---CTTEEEEEETTSEEEEEETT
T ss_pred -----e-ec-CCCCe-----------E--------------------E---EEeCCC---CCCEEEEEeCCCeEEEEeCC
Confidence 0 00 00000 0 0 012211 22247889999999999998
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCe----------EEEEEeeecCCCCeEEEEECC
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGS----------CVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~sp 308 (374)
....++..+..|..+|.++.|+|++.. +++++.|+.|++||+...... ..+......|...+..++|+|
T Consensus 309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 766678888899999999999998854 789999999999999752210 012234455667899999999
Q ss_pred CCC-EEEEEeCCCeEEEEEccC
Q 017296 309 DSK-IAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 309 ~~~-~l~s~~~dg~v~iwd~~~ 329 (374)
+++ +|++++.||.|++|++.+
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEECCCCEEEeEccc
Confidence 999 899999999999999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-22 Score=189.61 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=196.8
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeC--cccceeeeeeeeeceeeeEEeccCCc--cccceeeecc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT--VQHRTVSSSWVHSAAHGIVSVATGPS--IGLNKVISQG 83 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~ 83 (374)
.+++.++..+.. +..++|+|+|++|++++.|++|.+||+ .+++.+..+..+ .....+++++. .+++++++++
T Consensus 169 ~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g---~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 169 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG---IEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC---SEEEEEEECCSTTCTTTEEEEEE
T ss_pred ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC---CCcceEEeCCCcCCCCCEEEEEE
Confidence 456777773333 889999999999999999999999999 788877766533 23456677651 0457888777
Q ss_pred -ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 84 -RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 84 -~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
.+++|++||..++++.. .+.... ... .. ..+.+...+.. ..+ .....
T Consensus 245 ~~~~~v~v~D~~t~~~~~----~i~~~g---~~~----~~-------------~~~~~~~~v~~-------i~~-s~~~~ 292 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQ----IVSTRG---MTV----DT-------------QTYHPEPRVAA-------IIA-SHEHP 292 (543)
T ss_dssp EESSEEEEEETTTCCEEE----EEECCE---ECS----SS-------------CCEESCCCEEE-------EEE-CSSSS
T ss_pred ccCCeEEEEeccccccce----eecccC---ccc----Cc-------------cccccCCceEE-------EEE-CCCCC
Confidence 58999999998764311 111000 000 00 00000000000 001 12223
Q ss_pred eEEEcccCCCeEEEEecCCCceeE--EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.++++...+++|.+||+.+.+.+. .+.... + ... + .|.+ .+...++++..+++|.+||+++
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~------~---~~~--~---~~sp---dg~~l~va~~~~~~v~v~D~~t 355 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP------F---LHD--G---GWDS---SHRYFMTAANNSNKVAVIDSKD 355 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEEEECCS------S---CCC--E---EECT---TSCEEEEEEGGGTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEEeccCc------C---ccC--c---eECC---CCCEEEEEecCCCeEEEEECCC
Confidence 456667778999999998876433 222110 0 000 0 2322 2333345566789999999986
Q ss_pred CCCceeeeec----CccCeEEEEEecC-CCceEEEe-cCCeEEEEEcCCCC-----CeEEEEEeeecCCCCeEEEEECCC
Q 017296 241 PGIPLTAMKV----HLEPVLCLSIDES-CNGGISGG-ADQKIVLYNLDHST-----GSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 241 ~~~~~~~~~~----h~~~v~~~~~~~~-~~~~~s~s-~D~~i~lwd~~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
. .....+.. |......+ ++|+ +..+++++ .|++|++||++... .++ ...+..+..+...+.|||+
T Consensus 356 g-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~--v~~l~~~g~~~~~v~~~pd 431 (543)
T 1nir_A 356 R-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK--VAELQGQGGGSLFIKTHPK 431 (543)
T ss_dssp T-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE--EEEEECSCSCCCCEECCTT
T ss_pred C-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeE--EEEEEcCCCCceEEEcCCC
Confidence 3 44455543 54433333 4666 45556665 68999999997521 233 3445556667788999999
Q ss_pred CCEEEEEe-------CCCeEEEEEccCCeEE-EEe--------cccCCceEEEEEeCCCCEEEEEe-----CCCcEEEec
Q 017296 310 SKIAATAG-------WDRRVRIYNYRKGSAL-AIL--------KYHHATCNAVSFSSDCKLMASAS-----EDSTVALWE 368 (374)
Q Consensus 310 ~~~l~s~~-------~dg~v~iwd~~~~~~~-~~~--------~~h~~~v~~v~~sp~~~~las~s-----~D~~v~~W~ 368 (374)
+++|++++ .+++|++||+.+++.. ..+ ..|...+..++|+|+|++|..+. .|+.|.+||
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 99999887 2789999999988766 444 35678899999999999887652 489999999
Q ss_pred CCCC
Q 017296 369 LYPP 372 (374)
Q Consensus 369 ~~~~ 372 (374)
....
T Consensus 512 ~~t~ 515 (543)
T 1nir_A 512 DKTL 515 (543)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 7643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=190.19 Aligned_cols=202 Identities=9% Similarity=0.008 Sum_probs=125.4
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecC----CCCCceEEEEEecCCcEEEEec
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS----KSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~gs~dg~i~iwdl 238 (374)
.++++++.|++|++||+++++........ ...+|... ...+ .|.|. .......|++|+.|++|++||+
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~---~~~gH~~~--v~~v---~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLG---GKSGHHNF--VNDI---DIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEEC---TTTSCSSC--EEEE---EEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeec---ccCCCCCc--eEEE---EEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 35677888999999999887653321110 01122221 2222 22221 1112346899999999999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEE---------------------Eeeec
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIK---------------------KEINL 296 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~---------------------~~~~~ 296 (374)
+.. .+...+..|..++.+++|+|++. .+++++.|++|++||+.......... .....
T Consensus 174 ~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 174 TDE-GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp ETT-EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCC-ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 763 45566778999999999999764 68999999999999997543211110 01123
Q ss_pred CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC--------------------CCCEE
Q 017296 297 ERPGISGTSIR-PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS--------------------DCKLM 355 (374)
Q Consensus 297 ~~~~v~~~~~s-p~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp--------------------~~~~l 355 (374)
+...+.++.|+ |+++.|++++.|+++++||+..++....+..|...+..+.+.| ++.++
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA 332 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence 45567788876 8999999999999999999988877666666665555544443 33477
Q ss_pred EEEeCCCcEEEecCCCCC
Q 017296 356 ASASEDSTVALWELYPPH 373 (374)
Q Consensus 356 as~s~D~~v~~W~~~~~~ 373 (374)
++|+.|++|+|||+..+.
T Consensus 333 ~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 333 TAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEETTTTEEEEEETTCTT
T ss_pred EEECCCCEEEEEECCCCc
Confidence 889999999999997664
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-22 Score=189.75 Aligned_cols=291 Identities=11% Similarity=0.048 Sum_probs=193.1
Q ss_pred EEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec--CCCCCCCCC
Q 017296 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI--ENGGLSSNP 102 (374)
Q Consensus 25 ~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~--~~~~~~~~~ 102 (374)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..+++++ ++++|++++.|++|++||+ .+++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~--- 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKV--- 215 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEE---
Confidence 4789999999999999999999999988877763322 44667777 6789999999999999999 554211
Q ss_pred ceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC---CCCceEEEcccCCCeEEEEec
Q 017296 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA---EGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~vWd~ 179 (374)
..+..... +.. + .+.+ .++++++++...+++|.+||.
T Consensus 216 -~~i~~g~~----------p~~-------------------v----------a~sp~~~~dg~~l~v~~~~~~~v~v~D~ 255 (543)
T 1nir_A 216 -AEIKIGIE----------ARS-------------------V----------ESSKFKGYEDRYTIAGAYWPPQFAIMDG 255 (543)
T ss_dssp -EEEECCSE----------EEE-------------------E----------EECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred -EEEecCCC----------cce-------------------E----------EeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence 01110000 000 0 0112 034566666666899999999
Q ss_pred CCCceeEEeccCccC-CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE
Q 017296 180 NTAERCTRLHQNSCG-GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL 258 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~ 258 (374)
.+++++..+...... ....+.+..+ ...+ .+.+ .+...+++...++.|.+||+............+...+..+
T Consensus 256 ~t~~~~~~i~~~g~~~~~~~~~~~~~--v~~i-~~s~---~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~ 329 (543)
T 1nir_A 256 ETLEPKQIVSTRGMTVDTQTYHPEPR--VAAI-IASH---EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329 (543)
T ss_dssp TTCCEEEEEECCEECSSSCCEESCCC--EEEE-EECS---SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred cccccceeecccCcccCccccccCCc--eEEE-EECC---CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence 999887776532110 0000001111 1111 1222 2344577888999999999976433221122356678889
Q ss_pred EEecCCCceEEE-ecCCeEEEEEcCCCCCeEEEEEeee--cCCCCeEEEEECCC-CCEEEEEe-CCCeEEEEEccC----
Q 017296 259 SIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEIN--LERPGISGTSIRPD-SKIAATAG-WDRRVRIYNYRK---- 329 (374)
Q Consensus 259 ~~~~~~~~~~s~-s~D~~i~lwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~-~~~l~s~~-~dg~v~iwd~~~---- 329 (374)
.|+|++..++++ ..+++|++||++.. ++....... .|......+ ++|+ +++++++. .|++|.+||..+
T Consensus 330 ~~spdg~~l~va~~~~~~v~v~D~~tg--~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~ 406 (543)
T 1nir_A 330 GWDSSHRYFMTAANNSNKVAVIDSKDR--RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP 406 (543)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTT--EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred eECCCCCEEEEEecCCCeEEEEECCCC--eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence 999999977655 56899999998743 333222111 122122222 5787 66677775 589999999988
Q ss_pred ---CeEEEEecccCCceEEEEEeCCCCEEEEEe-------CCCcEEEecCCCC
Q 017296 330 ---GSALAILKYHHATCNAVSFSSDCKLMASAS-------EDSTVALWELYPP 372 (374)
Q Consensus 330 ---~~~~~~~~~h~~~v~~v~~sp~~~~las~s-------~D~~v~~W~~~~~ 372 (374)
.+.++++.+|...+..++|+|||++|++++ .|.+|++||+...
T Consensus 407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 407 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 789999999998889999999999999987 2789999999754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-21 Score=179.47 Aligned_cols=289 Identities=12% Similarity=0.086 Sum_probs=186.2
Q ss_pred cCCCceeEEE---EeCCCCEEEE--------------ecCCC--cEEEEeCccc--ceeeeeeeeeceeeeEEeccCCcc
Q 017296 16 GHRASVTDVC---FHQTKPILFA--------------GTTGG--ELRIWDTVQH--RTVSSSWVHSAAHGIVSVATGPSI 74 (374)
Q Consensus 16 gH~~~V~~l~---~~~~~~~l~s--------------~s~D~--~v~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (374)
.+...+..++ |++++..++. ++.|+ .|.+||..++ +.+..+..+ ..+.++++++
T Consensus 58 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~-- 132 (433)
T 3bws_A 58 DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG---FQPKSVRFID-- 132 (433)
T ss_dssp ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS---SCBCCCEESS--
T ss_pred ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC---CCceEEEEeC--
Confidence 3456778888 8887776553 33444 3444444334 333333322 2345677776
Q ss_pred ccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCC
Q 017296 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD 154 (374)
Q Consensus 75 ~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (374)
++..+++++.|++|++||+.+++...... ......|...+ .+..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~~~v-----------------~~~~----------------- 176 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSP--PEKYKKKLGFV-----------------ETIS----------------- 176 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECC--CHHHHTTCCEE-----------------EEEE-----------------
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecC--cccccccCCce-----------------eEEE-----------------
Confidence 56788889999999999998874310000 00000000000 0000
Q ss_pred CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE
Q 017296 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (374)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~ 234 (374)
+ .++ ..++++++.|+.|++||+++++.+..+..+. ....++ .+.++ +...+++++.|+.|+
T Consensus 177 -~-~~~-~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----------~~~~~~---~~~~~---~~~l~~~~~~~~~i~ 237 (433)
T 3bws_A 177 -I-PEH-NELWVSQMQANAVHVFDLKTLAYKATVDLTG----------KWSKIL---LYDPI---RDLVYCSNWISEDIS 237 (433)
T ss_dssp -E-GGG-TEEEEEEGGGTEEEEEETTTCCEEEEEECSS----------SSEEEE---EEETT---TTEEEEEETTTTEEE
T ss_pred -E-cCC-CEEEEEECCCCEEEEEECCCceEEEEEcCCC----------CCeeEE---EEcCC---CCEEEEEecCCCcEE
Confidence 0 011 2356677788999999999988776664221 111111 23332 333345677899999
Q ss_pred EEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe--------cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--------ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 235 iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
+||+++ ......+.. ...+.++++++++..+++++ .|+.|++||++.. ..... . .+...+..++|
T Consensus 238 ~~d~~~-~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--~~~~~--~-~~~~~~~~~~~ 310 (433)
T 3bws_A 238 VIDRKT-KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--KLIDT--I-GPPGNKRHIVS 310 (433)
T ss_dssp EEETTT-TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--EEEEE--E-EEEECEEEEEE
T ss_pred EEECCC-CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--cEEee--c-cCCCCcceEEE
Confidence 999975 344444544 34589999999998888887 5899999999744 22211 1 11235788999
Q ss_pred CCCCCE-EEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC---------------CCcEEEecCC
Q 017296 307 RPDSKI-AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE---------------DSTVALWELY 370 (374)
Q Consensus 307 sp~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~---------------D~~v~~W~~~ 370 (374)
+|+++. +++++.|++|++||+.+++....+. +...+.+++|+|+|++|++++. ||.|++||+.
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 999975 4677899999999999998887776 7778999999999998888876 5799999986
Q ss_pred CC
Q 017296 371 PP 372 (374)
Q Consensus 371 ~~ 372 (374)
.+
T Consensus 390 ~~ 391 (433)
T 3bws_A 390 TD 391 (433)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=198.71 Aligned_cols=148 Identities=21% Similarity=0.287 Sum_probs=126.4
Q ss_pred EEEEEecCCcEEEEeccCCC-CceeeeecCccCeEEEEEecC--CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.+++|+.||.|++||++... .....+.+|..+|.++.|+|+ +..+++++.||.|++||++....... .....|..
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~--~~~~~~~~ 146 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--IIIDAHAI 146 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC--EEEECCSS
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce--eEeecCCC
Confidence 58999999999999998632 145667789999999999998 88999999999999999976532222 23345677
Q ss_pred CeEEEEECC-------------CCCEEEEEeCCCeEEEEEccCC----eEEEEecccCCceEEEEEeCC---CCEEEEEe
Q 017296 300 GISGTSIRP-------------DSKIAATAGWDRRVRIYNYRKG----SALAILKYHHATCNAVSFSSD---CKLMASAS 359 (374)
Q Consensus 300 ~v~~~~~sp-------------~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~sp~---~~~las~s 359 (374)
.+.+++|+| +++++++|+.||+|++||+.++ +....+.+|...|.+++|+|+ +++|++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 899999999 5899999999999999999876 556778899999999999999 89999999
Q ss_pred CCCcEEEecCCCC
Q 017296 360 EDSTVALWELYPP 372 (374)
Q Consensus 360 ~D~~v~~W~~~~~ 372 (374)
.|++|++|++..+
T Consensus 227 ~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 227 QDRTCIIWTQDNE 239 (753)
T ss_dssp SSSCEEEEEESSS
T ss_pred cCCEEEEecCCCC
Confidence 9999999998653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-20 Score=167.78 Aligned_cols=273 Identities=9% Similarity=0.118 Sum_probs=164.3
Q ss_pred EEEEecCCCcEEEEeCc-ccc--eeeeeeeeeceeeeEEeccCCccccceeeecccc-CeEEEEecC--CCCCCCCCcee
Q 017296 32 ILFAGTTGGELRIWDTV-QHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD-GTVKCWDIE--NGGLSSNPSLT 105 (374)
Q Consensus 32 ~l~s~s~D~~v~vWd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-~~vrvwd~~--~~~~~~~~~~~ 105 (374)
++++++.|+.|++||+. +++ .+..+ .+ ...+..+++++ +++++++++.+ +.|++|++. +++.. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~-----~ 76 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DV--PGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALT-----F 76 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-EC--SSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEE-----E
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ec--CCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCcee-----e
Confidence 44555889999999985 332 22222 22 23455677776 56777777765 999999997 43210 0
Q ss_pred eeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC---C
Q 017296 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT---A 182 (374)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~---~ 182 (374)
+.. ...+. . +.. + .+ .++++++++++..++.|.+||+.. .
T Consensus 77 ~~~----------~~~~~-------~--------~~~-~----------~~-s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 119 (343)
T 1ri6_A 77 AAE----------SALPG-------S--------LTH-I----------ST-DHQGQFVFVGSYNAGNVSVTRLEDGLPV 119 (343)
T ss_dssp EEE----------EECSS-------C--------CSE-E----------EE-CTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred ccc----------cccCC-------C--------CcE-E----------EE-cCCCCEEEEEecCCCeEEEEECCCCccc
Confidence 000 00000 0 000 0 01 123355666666788999999953 3
Q ss_pred ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe-cCCcEEEEeccCCCCcee----eeec-CccCeE
Q 017296 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLT----AMKV-HLEPVL 256 (374)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~dg~i~iwdl~~~~~~~~----~~~~-h~~~v~ 256 (374)
+....+.... ....+ .+.+ .+. .+++++ .++.|++||+...+.... .... ....+.
T Consensus 120 ~~~~~~~~~~-----------~~~~~---~~s~---dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 120 GVVDVVEGLD-----------GCHSA---NISP---DNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp EEEEEECCCT-----------TBCCC---EECT---TSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred cccccccCCC-----------CceEE---EECC---CCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 3333332111 01111 1222 222 355554 899999999975232211 2222 234788
Q ss_pred EEEEecCCCceEEE-ecCCeEEEEEcCCCCCeEEEEEeee---cC---CCCeEEEEECCCCCEEE-EEeCCCeEEEEEcc
Q 017296 257 CLSIDESCNGGISG-GADQKIVLYNLDHSTGSCVIKKEIN---LE---RPGISGTSIRPDSKIAA-TAGWDRRVRIYNYR 328 (374)
Q Consensus 257 ~~~~~~~~~~~~s~-s~D~~i~lwd~~~~~~~~~~~~~~~---~~---~~~v~~~~~sp~~~~l~-s~~~dg~v~iwd~~ 328 (374)
.+.|+|++..++.+ ..++.|.+|+++..++......... .. ...+..++|+|++++|+ +...++.|++||+.
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 89999999866554 4899999999975444332222221 11 22466899999998876 55579999999997
Q ss_pred --C--CeEEEEecccCCceEEEEEeCCCCEEEEEe-CCCcEEEecCC
Q 017296 329 --K--GSALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 370 (374)
Q Consensus 329 --~--~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~v~~W~~~ 370 (374)
+ .+.+..+..+.. +..++|+|+|++|+.++ .|+.|++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 262 EDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 2 344555554544 88999999999888776 68999999664
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=174.50 Aligned_cols=282 Identities=11% Similarity=0.065 Sum_probs=179.9
Q ss_pred CCCceeEEEEeCCCC-EEEEec----CCC----cEEEEeC--cccceee--eeeeeeceeeeEEeccCCc----------
Q 017296 17 HRASVTDVCFHQTKP-ILFAGT----TGG----ELRIWDT--VQHRTVS--SSWVHSAAHGIVSVATGPS---------- 73 (374)
Q Consensus 17 H~~~V~~l~~~~~~~-~l~s~s----~D~----~v~vWd~--~~~~~~~--~~~~~~~~~~~~~~~~~~~---------- 73 (374)
+...|...+|.+.|. ++++|+ .|| +++|||+ .+++.+. .+.+|... +..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQW--LRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGG--HHHHHHHHHHHHHHHHHSS
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhH--HHHHHHHHHHHHHHHHcCC
Confidence 345788888988875 566876 567 8999999 8888763 35555432 333332210
Q ss_pred --cccceeeecccc------CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceee
Q 017296 74 --IGLNKVISQGRD------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVD 145 (374)
Q Consensus 74 --~~~~~l~s~~~D------~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (374)
..+.+++.++.+ ++|++||+..+.. ..+......... +
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-----~~l~~~~~~v~~----------------------------~- 184 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-----FVVHRSPQPLMS----------------------------P- 184 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-----EEEEEESSCEEE----------------------------E-
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-----EEEeCCCCccee----------------------------e-
Confidence 013456655543 7999999974321 111100000000 0
Q ss_pred cCCCCCCCCCCCCCCCceEEEcccCC--CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 146 TDSLCDSKDDVPAEGPKYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~d--~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
.+.+ +++.+++++..+ ..|++||+++++... +... .. .... ..+.|+ +...
T Consensus 185 ---------~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~----------~~--~~~~-~~~spd---g~~l 237 (415)
T 2hqs_A 185 ---------AWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF----------PR--HNGA-PAFSPD---GSKL 237 (415)
T ss_dssp ---------EECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC----------SS--CEEE-EEECTT---SSEE
T ss_pred ---------EEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEE-eecC----------CC--cccC-EEEcCC---CCEE
Confidence 0112 234444444332 499999999987643 3211 01 1111 134443 3333
Q ss_pred EEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++++.++. |.+||++.. ....+..|...+.++.|+|++..++.++. ++ .|.+||++... .. .+..+.
T Consensus 238 a~~~~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~---~l~~~~ 310 (415)
T 2hqs_A 238 AFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQ---RITWEG 310 (415)
T ss_dssp EEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CE---ECCCSS
T ss_pred EEEEecCCCceEEEEECCCC--CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EE---EEecCC
Confidence 446766655 999999753 24567788889999999999998888876 45 56666775432 11 223344
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC---cEEEecCC
Q 017296 299 PGISGTSIRPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~---~v~~W~~~ 370 (374)
..+.+++|+||+++|+.++.+ ..|.+||+.+++.. .+..|. .+.+++|+|||++|++++.|+ .|++|++.
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 568889999999999888764 58999999888764 566565 899999999999999988887 79999875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-20 Score=184.15 Aligned_cols=294 Identities=10% Similarity=0.026 Sum_probs=181.4
Q ss_pred CCceeEEEEeCCCCEEEEecC-CC-----cEEEEeCcccceeeeeeeeece----------------------eeeEEec
Q 017296 18 RASVTDVCFHQTKPILFAGTT-GG-----ELRIWDTVQHRTVSSSWVHSAA----------------------HGIVSVA 69 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~-D~-----~v~vWd~~~~~~~~~~~~~~~~----------------------~~~~~~~ 69 (374)
...|.+++|+|||++|++++. |+ +|++||+.+++....+..+... ..+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 8999999888765444333211 2356677
Q ss_pred cCCccccceeeeccccCeEEEEecCCC---CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeec
Q 017296 70 TGPSIGLNKVISQGRDGTVKCWDIENG---GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT 146 (374)
Q Consensus 70 ~~~~~~~~~l~s~~~D~~vrvwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (374)
+++ ++++|++++. ++|++||+.++ +... +........ .+
T Consensus 116 ~Sp--Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~-----l~~~~~~~~----------------------------~~-- 157 (741)
T 2ecf_A 116 WSP--DAQRLLFPLG-GELYLYDLKQEGKAAVRQ-----LTHGEGFAT----------------------------DA-- 157 (741)
T ss_dssp ECT--TSSEEEEEET-TEEEEEESSSCSTTSCCB-----CCCSSSCEE----------------------------EE--
T ss_pred ECC--CCCEEEEEeC-CcEEEEECCCCCcceEEE-----cccCCcccc----------------------------cc--
Confidence 877 6788887776 99999999876 3210 000000000 00
Q ss_pred CCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcC------CCCCcceeEEEeeecCCCCC
Q 017296 147 DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS------SKGRGMCMAVQAYLPSKSQG 220 (374)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 220 (374)
.+.++ +++++++. ++.|.+||+.+++..............+.. ...... . ..+.++ +
T Consensus 158 --------~~SPD-G~~la~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~--~-~~~SpD---g 220 (741)
T 2ecf_A 158 --------KLSPK-GGFVSFIR--GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHT--G-YWWAPD---D 220 (741)
T ss_dssp --------EECTT-SSEEEEEE--TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCC--S-EEECTT---S
T ss_pred --------cCCCC-CCEEEEEe--CCcEEEEecCCCCEEEeccCCccceeccccceeeeecccccc--c-eEECCC---C
Confidence 01223 34444443 358999999987654322211000000000 000000 0 123332 2
Q ss_pred ceEEEEEecCC---------------------------------cEEEEeccC-CCCceeeee--cCccCeEEEEEecCC
Q 017296 221 FVNVLAGYEDG---------------------------------SILVWDIRN-PGIPLTAMK--VHLEPVLCLSIDESC 264 (374)
Q Consensus 221 ~~~~~~gs~dg---------------------------------~i~iwdl~~-~~~~~~~~~--~h~~~v~~~~~~~~~ 264 (374)
. .|+.++.|+ .|.+||+.. ... ..... .|...+..++| |++
T Consensus 221 ~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 221 S-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp S-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EET
T ss_pred C-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCC
Confidence 2 355555444 788889875 432 22221 47788999999 999
Q ss_pred CceEEEec-----CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc-CCeEEEEecc
Q 017296 265 NGGISGGA-----DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKY 338 (374)
Q Consensus 265 ~~~~s~s~-----D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~ 338 (374)
..++.++. +..|.+||++..................+..++|+||++++++++.||+++||.+. +++ ...+..
T Consensus 298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC
T ss_pred CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee
Confidence 98886653 67899999875443222211110000134578999999999999999999998775 455 777888
Q ss_pred cCCceEEE-EEeCCCCEEE-EEeCCC--cEEEecCC
Q 017296 339 HHATCNAV-SFSSDCKLMA-SASEDS--TVALWELY 370 (374)
Q Consensus 339 h~~~v~~v-~~sp~~~~la-s~s~D~--~v~~W~~~ 370 (374)
|...|..+ +|+|||+.|+ +++.|+ .++||++.
T Consensus 377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 88888887 5999999765 555565 89999874
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-19 Score=158.54 Aligned_cols=283 Identities=7% Similarity=0.034 Sum_probs=171.4
Q ss_pred EEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee-ccccCeEEEEecCCCCCCCC
Q 017296 24 VCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 24 l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~D~~vrvwd~~~~~~~~~ 101 (374)
..|.+++. ++++++.++.|.+||..+++.+..+..+. ... .+++++ ++++++. ...++.|.+||+.+++..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~-- 75 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPK-- 75 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCE--
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC--Ccc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCcee--
Confidence 34665554 47788999999999999888766654332 223 677776 5565554 455899999999876420
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC--eEEEEec
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS--EVEIWDL 179 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~vWd~ 179 (374)
...+... . .+.... .+. +++++++++...++ .|.+||+
T Consensus 76 -~~~~~~~----------~----------~~~~~~------------------~~s-~dg~~l~~~~~~~~~~~i~v~d~ 115 (331)
T 3u4y_A 76 -VVAIQEG----------Q----------SSMADV------------------DIT-PDDQFAVTVTGLNHPFNMQSYSF 115 (331)
T ss_dssp -EEEEEEC----------S----------SCCCCE------------------EEC-TTSSEEEECCCSSSSCEEEEEET
T ss_pred -EEecccC----------C----------CCccce------------------EEC-CCCCEEEEecCCCCcccEEEEEC
Confidence 0000000 0 000000 011 22344443333324 8999999
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCc-EEEEeccCCCCce---eeeecCccCe
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS-ILVWDIRNPGIPL---TAMKVHLEPV 255 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~-i~iwdl~~~~~~~---~~~~~h~~~v 255 (374)
++++.+..+.... .... ..+.++ +...+++...++. |.+|++...+... ..........
T Consensus 116 ~~~~~~~~~~~~~-----------~~~~---~~~spd---g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 178 (331)
T 3u4y_A 116 LKNKFISTIPIPY-----------DAVG---IAISPN---GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRP 178 (331)
T ss_dssp TTTEEEEEEECCT-----------TEEE---EEECTT---SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSE
T ss_pred CCCCeEEEEECCC-----------Cccc---eEECCC---CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCc
Confidence 9988766654311 0111 123332 3334555677788 9999997533221 1111234567
Q ss_pred EEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEccCCeE-
Q 017296 256 LCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSA- 332 (374)
Q Consensus 256 ~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~~~~- 332 (374)
..+.|+|++..++ ++..++.|.+||++....... ...+.. ...+..++|+||+++++.++ .++.|.+||..+++.
T Consensus 179 ~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 179 FNITFTPDGNFAFVANLIGNSIGILETQNPENITL-LNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE-EEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcccce-eeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 8999999998554 555789999999975543111 112222 24567899999999776554 578999999998876
Q ss_pred -EEEeccc----CC---ceEEEEEeCCCCEEEEE-eCCCcEEEecCCCC
Q 017296 333 -LAILKYH----HA---TCNAVSFSSDCKLMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 333 -~~~~~~h----~~---~v~~v~~sp~~~~las~-s~D~~v~~W~~~~~ 372 (374)
+..+..+ .. ....++|+|||++|+.+ ..++.|++|++..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 4443322 22 23558999999987654 55679999999754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-19 Score=167.08 Aligned_cols=265 Identities=11% Similarity=0.041 Sum_probs=175.4
Q ss_pred EEeecCCCceeEEEEeC--------------CCCEEEEecCC------CcEEEEeCcccceeeeeeeeeceeeeEEeccC
Q 017296 12 AVLRGHRASVTDVCFHQ--------------TKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~--------------~~~~l~s~s~D------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (374)
..+.+|...++.+++++ .+..++.++.+ +.|++||.. +..+..+..|. ..+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~--~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSP--QPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEES--SCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCC--CcceeeEEc
Confidence 55889999999988875 15555555543 799999986 44555665564 357888888
Q ss_pred CccccceeeeccccC---eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCC
Q 017296 72 PSIGLNKVISQGRDG---TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS 148 (374)
Q Consensus 72 ~~~~~~~l~s~~~D~---~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
+ +++++++++.|+ +|++||+.+++.. .+........ . +
T Consensus 188 p--dg~~la~~s~~~~~~~i~~~d~~tg~~~-----~l~~~~~~~~--------------------~--------~---- 228 (415)
T 2hqs_A 188 P--DGSKLAYVTFESGRSALVIQTLANGAVR-----QVASFPRHNG--------------------A--------P---- 228 (415)
T ss_dssp T--TSSEEEEEECTTSSCEEEEEETTTCCEE-----EEECCSSCEE--------------------E--------E----
T ss_pred C--CCCEEEEEEecCCCcEEEEEECCCCcEE-----EeecCCCccc--------------------C--------E----
Confidence 7 678899988775 9999999887421 1100000000 0 0
Q ss_pred CCCCCCCCCCCCCceEEEcccCC--CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE
Q 017296 149 LCDSKDDVPAEGPKYMAVAGEQL--SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (374)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d--~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (374)
.+.+ +++.++++++.+ ..|.+||+++++. ..+..+. ..... ..+.++ +. .++.
T Consensus 229 ------~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~------------~~~~~-~~~spd---g~-~l~~ 283 (415)
T 2hqs_A 229 ------AFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR------------SNNTE-PTWFPD---SQ-NLAF 283 (415)
T ss_dssp ------EECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS------------SCEEE-EEECTT---SS-EEEE
T ss_pred ------EEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC------------Ccccc-eEECCC---CC-EEEE
Confidence 0112 334455455443 4599999998765 3332210 01111 134433 32 4666
Q ss_pred Eec-CC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 227 GYE-DG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 227 gs~-dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++. ++ .|.+||+... ....+..+...+.++.|+|++..++.++.+ ..|.+||++... .. .+..+. .
T Consensus 284 ~s~~~g~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~--~~---~l~~~~-~ 355 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQ---VLSSTF-L 355 (415)
T ss_dssp EECTTSSCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--EE---ECCCSS-S
T ss_pred EECCCCCcEEEEEECCCC--CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC--EE---EecCCC-C
Confidence 554 55 5666787643 234455677789999999999988888764 589999997543 21 122232 6
Q ss_pred eEEEEECCCCCEEEEEeCCC---eEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 301 ISGTSIRPDSKIAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
+.+++|+||+++|+.++.|+ .|.+||+. ++....+..|.+.|.+++|+|.-
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 88999999999999888877 79999986 56677889999999999999964
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-17 Score=149.32 Aligned_cols=282 Identities=12% Similarity=0.145 Sum_probs=176.9
Q ss_pred cCCCceeEEEEeCCCCEEEEecC-------CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccc-eeeeccccCe
Q 017296 16 GHRASVTDVCFHQTKPILFAGTT-------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGT 87 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~-------D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~~ 87 (374)
.....+..++|+|++++|++++. ++.|.+||..+++.+..+.... ....+++++ +++ .+++...+++
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~--dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINN--TTQTLWFGNTVNSA 112 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEET--TTTEEEEEETTTTE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECC--CCCEEEEEecCCCE
Confidence 45567889999999998887774 5689999999888766654322 234455665 455 4556677899
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|.+||+.+++... .+..... .. .....+. .+.. + .+.+++ +.++++
T Consensus 113 v~~~d~~~~~~~~----~~~~~~~-----------~~--~~~~~~~-----~~~~-~----------~~s~dg-~~l~~~ 158 (353)
T 3vgz_A 113 VTAIDAKTGEVKG----RLVLDDR-----------KR--TEEVRPL-----QPRE-L----------VADDAT-NTVYIS 158 (353)
T ss_dssp EEEEETTTCCEEE----EEESCCC-----------CC--CSSCCCC-----EEEE-E----------EEETTT-TEEEEE
T ss_pred EEEEeCCCCeeEE----EEecCCC-----------cc--ccccCCC-----CCce-E----------EECCCC-CEEEEE
Confidence 9999998874210 0000000 00 0000000 0000 0 011233 334444
Q ss_pred c-cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 G-EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~-~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+ ..++.|.+||+++++....+..... ....+ .+.++ +. .+++++.++.|.+||+.+. ....
T Consensus 159 ~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~-----~~s~d---g~-~l~~~~~~~~i~~~d~~~~-~~~~ 220 (353)
T 3vgz_A 159 GIGKESVIWVVDGGNIKLKTAIQNTGK--------MSTGL-----ALDSE---GK-RLYTTNADGELITIDTADN-KILS 220 (353)
T ss_dssp EESSSCEEEEEETTTTEEEEEECCCCT--------TCCCC-----EEETT---TT-EEEEECTTSEEEEEETTTT-EEEE
T ss_pred ecCCCceEEEEcCCCCceEEEecCCCC--------ccceE-----EECCC---CC-EEEEEcCCCeEEEEECCCC-eEEE
Confidence 4 4578999999999987766642110 00111 12222 22 4777788999999999763 3343
Q ss_pred eeec----CccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe-CCC
Q 017296 247 AMKV----HLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG-WDR 320 (374)
Q Consensus 247 ~~~~----h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg 320 (374)
.+.. +...+..+++++++..++.++. ++.|.+||++..+ .. ..+.... ...++|+|++++++.++ .++
T Consensus 221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~--~~~~~~~--~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 221 RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--IL--AKVAAPE--SLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--EE--EEEECSS--CCCEEEETTTTEEEEEETTTT
T ss_pred EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EE--EEEEcCC--CceEEECCCCCEEEEEECCCC
Confidence 3332 4556788999999887666554 5999999986543 22 1222222 25689999999665555 689
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 361 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 361 (374)
+|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..+
T Consensus 295 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred eEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 9999999999988877644 478999999999966655444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-19 Score=155.52 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=163.9
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeecc--ccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG--RDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~D~ 86 (374)
....+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ...+..+.+++ +++.+++++ .++
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~sp--dg~~l~~~~~~~~~ 108 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-TICNNDHGISP--DGALYAISDKVEFG 108 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-CCBCSCCEECT--TSSEEEEEECTTTS
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-cccccceEECC--CCCEEEEEEeCCCC
Confidence 3456778999999999999999999987 78999999988 76544433331 12355667776 567787777 445
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
..++|.++..... ...+
T Consensus 109 ~~~l~~~~~~~~~---~~~~------------------------------------------------------------ 125 (297)
T 2ojh_A 109 KSAIYLLPSTGGT---PRLM------------------------------------------------------------ 125 (297)
T ss_dssp SCEEEEEETTCCC---CEEC------------------------------------------------------------
T ss_pred cceEEEEECCCCc---eEEe------------------------------------------------------------
Confidence 6666666421000 0000
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.... .+ .. ..+.+ .+...++++..++.+++|++........
T Consensus 126 ~~~~--~~---------------------------------~~-~~~sp---dg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 126 TKNL--PS---------------------------------YW-HGWSP---DGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CSSS--SE---------------------------------EE-EEECT---TSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ecCC--Cc---------------------------------cc-eEECC---CCCEEEEEECCCCceEEEEEECCCCcce
Confidence 0000 00 00 01111 1222234677788889998754333455
Q ss_pred eeecCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC------
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD------ 319 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------ 319 (374)
.+..|...+.++.++|++..++.++ .|+.+++|+++...... ..+..+...+..++|+|++++|+.++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 5667788899999999998777665 59999999987433322 2233344567889999999999888766
Q ss_pred -----CeEEEEEccCCeE--EEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 320 -----RRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 320 -----g~v~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
+.|.+||+.+++. +..+.+|...+..++|+|||++|++++.|.
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988754 444557888999999999999998887654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=178.96 Aligned_cols=340 Identities=9% Similarity=0.079 Sum_probs=198.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCC------CcEEEEeCcccceeeeeeeeecee-----eeEEeccCCccccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG------GELRIWDTVQHRTVSSSWVHSAAH-----GIVSVATGPSIGLN 77 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D------~~v~vWd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 77 (374)
.....|.+|...|.+++|||||++|+.++.+ ..|.+||+.+++ ...+..|.... .+..++|++ +++
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ 119 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGN 119 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCC
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCC--CCE
Confidence 3567888999999999999999999987643 479999998775 34444454221 126788887 556
Q ss_pred eeeecccc------CeEEEEecCCCCCCC---CCceeeeecce--------------------eeeeeeeecc-------
Q 017296 78 KVISQGRD------GTVKCWDIENGGLSS---NPSLTIKTNSY--------------------HFCKLSLVKE------- 121 (374)
Q Consensus 78 ~l~s~~~D------~~vrvwd~~~~~~~~---~~~~~~~~~~~--------------------~~~~~~~~~~------- 121 (374)
.+++++.| ..|.+|++.++.... .+...+..... ....+.+...
T Consensus 120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 67777654 457778876653210 00000000000 0000000000
Q ss_pred -------------ccccccccC--CCCccccccc--CceeecCCCC-CCCCCCCCCCCceEEEcccCCCeEEEEecCCCc
Q 017296 122 -------------PYANAKQAN--EPKDCYEREV--GETVDTDSLC-DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183 (374)
Q Consensus 122 -------------~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~ 183 (374)
+........ .....+..+. +......... .....+.+++ +.++++ .++.|.+||+...+
T Consensus 200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG-~~la~~--~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDG-RRILFS--KGGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESS-SCEEEE--ETTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCC-CEEEEE--eCCEEEEecCCceE
Confidence 000000000 0000111111 0000000000 0000112233 344443 36899999995443
Q ss_pred eeEEeccCccCCCCCcC-CCCCcceeEEEeee-cCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc-CeEEEEE
Q 017296 184 RCTRLHQNSCGGSPNFS-SKGRGMCMAVQAYL-PSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-PVLCLSI 260 (374)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~-~v~~~~~ 260 (374)
+..+..........+. ....... ..+. ++ +. .++.++ ++.|.+|++... ....+..|.. .+..+.|
T Consensus 277 -l~~l~~~~~~~~~~~~~~~~~v~~---~~~S~pd---G~-~la~~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 277 -IEKIEIGDLESPEDRIISIPSKFA---EDFSPLD---GD-LIAFVS-RGQAFIQDVSGT--YVLKVPEPLRIRYVRRGG 345 (1045)
T ss_dssp -EEECCCCCCCBCCSEEEECGGGGE---EEEEECG---GG-CEEEEE-TTEEEEECTTSS--BEEECSCCSCEEEEEECS
T ss_pred -eeeeccCcccccccccccccccce---eeecCCC---CC-EEEEEE-cCEEEEEcCCCC--ceEEccCCCcceEEeeeE
Confidence 3344321100000000 0000111 1244 33 22 355555 889999998642 2344666777 8899999
Q ss_pred ecCCCceEEEecCCeEE-EEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 261 DESCNGGISGGADQKIV-LYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 261 ~~~~~~~~s~s~D~~i~-lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
+ ++..++.++.++.+. +||++... .. .+..+...+..++||||+++|++++.++.|++||+.+++....+.+|
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~--~~---~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~ 419 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGK--AE---KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 419 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCC--EE---ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCC--ce---EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC
Confidence 9 888889988888888 88986532 11 12244567899999999999999999999999999999887777789
Q ss_pred CCceEEEEEeCCCCEEEEEeCCC----------cEEEecCCC
Q 017296 340 HATCNAVSFSSDCKLMASASEDS----------TVALWELYP 371 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~s~D~----------~v~~W~~~~ 371 (374)
...+.+++|+|||++||+++.++ .|++|++..
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 99999999999999999887654 999999864
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-19 Score=172.50 Aligned_cols=271 Identities=12% Similarity=0.054 Sum_probs=176.4
Q ss_pred CCCceeEEEEeCCCCEEEEecC-CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc---cCeEEEEe
Q 017296 17 HRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR---DGTVKCWD 92 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---D~~vrvwd 92 (374)
+..+|++++|+|||+.|++++. |++++||++.+++.. .+..|. ...+..++|++ + +.+++++. +...++|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~-~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREP-INSVLDPHYGV--G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSC-CSEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeeccc-ccccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence 3678999999999999998887 999999998655543 333232 12466778886 4 56666554 56677877
Q ss_pred cCC--CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 93 IEN--GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 93 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
+.. ... ...+.....+. .. .+.++++..+++++..
T Consensus 95 ~~~~~~g~----~~~l~~~~~~~-----------------------------~~----------~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 95 VNTSRPGE----EQRLEAVKPMR-----------------------------IL----------SGVDTGEAVVFTGATE 131 (582)
T ss_dssp EETTSTTC----CEECTTSCSBE-----------------------------EE----------EEEECSSCEEEEEECS
T ss_pred EeccCCCc----cccccCCCCce-----------------------------ee----------eeCCCCCeEEEEecCC
Confidence 654 210 00000000000 00 0112333445555555
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC----CcEEEEeccCCCCcee
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWDIRNPGIPLT 246 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d----g~i~iwdl~~~~~~~~ 246 (374)
++ +.+||+.+++........ . . . ..+.|+ +. .++.++.+ +.|++||+.... ..
T Consensus 132 ~~-~~l~d~~~g~~~~l~~~~-----------~--~--~-~~~spD---G~-~la~~~~~~~~~~~i~~~d~~~g~--~~ 188 (582)
T 3o4h_A 132 DR-VALYALDGGGLRELARLP-----------G--F--G-FVSDIR---GD-LIAGLGFFGGGRVSLFTSNLSSGG--LR 188 (582)
T ss_dssp SC-EEEEEEETTEEEEEEEES-----------S--C--E-EEEEEE---TT-EEEEEEEEETTEEEEEEEETTTCC--CE
T ss_pred CC-ceEEEccCCcEEEeecCC-----------C--c--e-EEECCC---CC-EEEEEEEcCCCCeEEEEEcCCCCC--ce
Confidence 54 459999988654333211 0 0 1 123332 33 46666666 789999987533 44
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEE--------ECCCCCEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTS--------IRPDSKIAATA 316 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~s~ 316 (374)
.+..|...+..++|+|++..+++++.++ .|.+||+++... . ....+...+..++ |+|||++++++
T Consensus 189 ~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 263 (582)
T 3o4h_A 189 VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV--E---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVA 263 (582)
T ss_dssp EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE--E---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE--E---EccCCCcChhhhhhccccceeEcCCCcEEEEE
Confidence 6778888899999999999999888888 899999875432 2 2233333455555 99999999999
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc---EEEecC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST---VALWEL 369 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~---v~~W~~ 369 (374)
+.|+++++|++ ++... .+.+.|.+++|+ +++++++++.+.+ +.+|+.
T Consensus 264 ~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 264 RREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 99999999999 66554 345678999999 9999999887755 556654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-17 Score=148.55 Aligned_cols=202 Identities=7% Similarity=0.095 Sum_probs=127.9
Q ss_pred CceEEEcccCCCeEEEEecCC-Cc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 161 PKYMAVAGEQLSEVEIWDLNT-AE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
++++++++..++.+++||+.. +. .+..+..... .+. .......... ..+.+ .+. .+++...++.|.+||
T Consensus 97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~p~-~~~~~~~~~~-~~~sp---dg~-l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH--GPR-PEQDGSHIHY-TDLTP---DNR-LAVIDLGSDKVYVYN 168 (347)
T ss_dssp TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC--CSS-TTCSSCCEEE-EEECT---TSC-EEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC--CCC-ccccCCCceE-EEECC---CCc-EEEEeCCCCEEEEEE
Confidence 355666666788999999963 32 2222211100 000 0000011111 12333 344 567777889999999
Q ss_pred ccCCCCce--eeeecC-ccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEeeecCC------CCeEEEEEC
Q 017296 238 IRNPGIPL--TAMKVH-LEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLER------PGISGTSIR 307 (374)
Q Consensus 238 l~~~~~~~--~~~~~h-~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~------~~v~~~~~s 307 (374)
+...+... ..+..+ ......++|+|++..++. +..++.|.+|+++..++............ ..+..++|+
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 97323211 112222 236778999999985554 56789999999986555543333332221 347889999
Q ss_pred CCCCEE-EEEeCCCeEEEEEccC---CeEEEEecccCCceEEEEEeCCCCEEEEEeCC-CcEEEecCC
Q 017296 308 PDSKIA-ATAGWDRRVRIYNYRK---GSALAILKYHHATCNAVSFSSDCKLMASASED-STVALWELY 370 (374)
Q Consensus 308 p~~~~l-~s~~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W~~~ 370 (374)
|||++| ++...+++|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|+++
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 999977 5666789999999962 25566666667778999999999988887654 899999664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-18 Score=151.17 Aligned_cols=272 Identities=12% Similarity=0.106 Sum_probs=166.8
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccce-eeeccccCeEEEEecCCCCCCCCCceeeeec
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~ 109 (374)
.+|++++.+++|.+||..+++.+..+...........+++++ ++++ +++++.++.|.+||+.+++... .+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~~~~~~----~~~~~ 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG----RIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE----EEECC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCCCCeEe----eEEcC
Confidence 478999999999999999888766554221000245566776 4544 4677778999999998764210 00000
Q ss_pred ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc-----------CCCeEEEEe
Q 017296 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-----------QLSEVEIWD 178 (374)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~d~~i~vWd 178 (374)
. +... ...+.. + .+.++ +++++++.. .++.|.+||
T Consensus 76 ~-----------~~~~-----------~~~~~~-~----------~~s~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d 121 (337)
T 1pby_B 76 T-----------PEER-----------VKSLFG-A----------ALSPD-GKTLAIYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp B-----------TTEE-----------EECTTC-E----------EECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred C-----------cccc-----------cccccc-e----------EECCC-CCEEEEEecccccccccccccCceEEEEE
Confidence 0 0000 000000 0 01122 233444321 358999999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc--cCeE
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL--EPVL 256 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~--~~v~ 256 (374)
+.+++....+..... ... + .+.++ +. .++++ ++.|.+||++.. .....+..+. .++
T Consensus 122 ~~~~~~~~~~~~~~~---------~~~--~---~~s~d---g~-~l~~~--~~~i~~~d~~~~-~~~~~~~~~~~~~~~- 179 (337)
T 1pby_B 122 AETLSRRKAFEAPRQ---------ITM--L---AWARD---GS-KLYGL--GRDLHVMDPEAG-TLVEDKPIQSWEAET- 179 (337)
T ss_dssp TTTTEEEEEEECCSS---------CCC--E---EECTT---SS-CEEEE--SSSEEEEETTTT-EEEEEECSTTTTTTT-
T ss_pred CCCCcEEEEEeCCCC---------cce--e---EECCC---CC-EEEEe--CCeEEEEECCCC-cEeeeeeccccCCCc-
Confidence 998877655542110 011 1 13222 22 35555 689999999753 3333333332 232
Q ss_pred EEEEecCCCceEEEec-CC-----------------------eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 257 CLSIDESCNGGISGGA-DQ-----------------------KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 257 ~~~~~~~~~~~~s~s~-D~-----------------------~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
.+++++..++..+. ++ .|.+||++... .. ......+...+.+++|+||+++
T Consensus 180 --~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~-~~~~~~~~~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 180 --YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MA-MREVRIMDVFYFSTAVNPAKTR 254 (337)
T ss_dssp --BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EE-EEEEEECSSCEEEEEECTTSSE
T ss_pred --eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC--ce-EeecCCCCCceeeEEECCCCCE
Confidence 45666655443332 22 46889886543 22 2223334456788999999999
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 313 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++|++...
T Consensus 255 l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 255 AFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred EEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 9887 79999999999988877764 356789999999999988899999999998654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-18 Score=173.94 Aligned_cols=295 Identities=11% Similarity=0.085 Sum_probs=191.3
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....+.+|...+.+++|+++ .++++++.|++++||.... +.....+..|. .+...++++ ++++++.+ .|+.|
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~Sp--DG~~la~~-~~~~i 267 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNT--DGRRILFS-KGGSI 267 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEE--SSSCEEEE-ETTEE
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcC--CCCEEEEE-eCCEE
Confidence 34566899999999999988 7788889999999998643 33333333332 233446665 66777776 58999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.+||+..... . ....+.. .. ... .......+ ....+.+++++.+++++
T Consensus 268 ~~~d~~~~~l------~--~l~~~~~--------~~------~~~---~~~~~~~v-------~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 268 YIFNPDTEKI------E--KIEIGDL--------ES------PED---RIISIPSK-------FAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp EEECTTTCCE------E--ECCCCCC--------CB------CCS---EEEECGGG-------GEEEEEECGGGCEEEEE
T ss_pred EEecCCceEe------e--eeccCcc--------cc------ccc---cccccccc-------ceeeecCCCCCEEEEEE
Confidence 9999843211 0 0000000 00 000 00000000 00011202223444444
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE-EEeccCCCCceee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL-VWDIRNPGIPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~-iwdl~~~~~~~~~ 247 (374)
++.+.+|++.+++... +..+ . ........+ + ....++.++.++.|. +||+... . ...
T Consensus 316 --~~~i~~~~~~~~~~~~-~~~~----------~--~~~~~~~~~----s-dg~~l~~~s~~~~l~~~~d~~~~-~-~~~ 373 (1045)
T 1k32_A 316 --RGQAFIQDVSGTYVLK-VPEP----------L--RIRYVRRGG----D-TKVAFIHGTREGDFLGIYDYRTG-K-AEK 373 (1045)
T ss_dssp --TTEEEEECTTSSBEEE-CSCC----------S--CEEEEEECS----S-SEEEEEEEETTEEEEEEEETTTC-C-EEE
T ss_pred --cCEEEEEcCCCCceEE-ccCC----------C--cceEEeeeE----c-CCCeEEEEECCCceEEEEECCCC-C-ceE
Confidence 5789999998776432 2111 0 000011112 1 223577777788888 8898643 2 334
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC-------
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR------- 320 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg------- 320 (374)
+.+|...+..++|+|++..+++++.++.|++||++...... ....+...+.+++|||||++|++++.++
T Consensus 374 l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~----~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 374 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV----IERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE----EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE----eccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 45788899999999999999999999999999997543221 2224556678999999999998887654
Q ss_pred ---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 ---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.|++||+.+++ ...+..|...+..++|+|||++|++++.++..++|+..
T Consensus 450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99999998887 66778888889999999999999999999998888753
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-18 Score=167.60 Aligned_cols=304 Identities=9% Similarity=0.027 Sum_probs=166.0
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccccee-eeeeeeece---------------eeeE
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAA---------------HGIV 66 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~-~~~~~~~~~---------------~~~~ 66 (374)
+.++..+....|..+. +..+.|. |..+++++.|+ | +||+.+++.+ ..+..|... ..+.
T Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~ 85 (706)
T 2z3z_A 12 SLMPGGKEFYNFYPEY--VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSF 85 (706)
T ss_dssp ------------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCE
T ss_pred cccCCccccccccccc--CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCce
Confidence 3445555555666553 5667888 66777777777 8 9999988763 444333211 3477
Q ss_pred EeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeec
Q 017296 67 SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDT 146 (374)
Q Consensus 67 ~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (374)
.+++++ + ..++.+ .|+++++||+.+++.. .+ .. ... ...
T Consensus 86 ~~~~sp--d-~~~~~~-~~~~i~~~d~~~~~~~-----~l------------~~-~~~-------~~~------------ 124 (706)
T 2z3z_A 86 RTLDAG--R-GLVVLF-TQGGLVGFDMLARKVT-----YL------------FD-TNE-------ETA------------ 124 (706)
T ss_dssp EEEETT--T-TEEEEE-ETTEEEEEETTTTEEE-----EE------------EC-CTT-------CCT------------
T ss_pred eEEECC--C-CeEEEE-ECCEEEEEECCCCceE-----Ec------------cC-Ccc-------ccc------------
Confidence 888887 4 344433 4599999999876310 00 00 000 000
Q ss_pred CCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC-----CceeEEeccCccCC---CCCcCC-CCCcceeEEEeeecCC
Q 017296 147 DSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT-----AERCTRLHQNSCGG---SPNFSS-KGRGMCMAVQAYLPSK 217 (374)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~-----~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~ 217 (374)
...+.++ ++.++++ .++.|.+||+.+ ++............ ...... ..... . ..+.|+
T Consensus 125 ------~~~~Spd-G~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~--~-~~~SpD- 191 (706)
T 2z3z_A 125 ------SLDFSPV-GDRVAYV--RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEK--G-TFWSPK- 191 (706)
T ss_dssp ------TCEECTT-SSEEEEE--ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCC--S-EEECTT-
T ss_pred ------CCcCCCC-CCEEEEE--ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCc--e-EEECCC-
Confidence 0011233 3445543 468999999998 76433222111000 000000 00000 0 123332
Q ss_pred CCCceEEEEEe---------------------------------cCCcEEEEeccCCCCceeee--ecCccCeEEEEEec
Q 017296 218 SQGFVNVLAGY---------------------------------EDGSILVWDIRNPGIPLTAM--KVHLEPVLCLSIDE 262 (374)
Q Consensus 218 ~~~~~~~~~gs---------------------------------~dg~i~iwdl~~~~~~~~~~--~~h~~~v~~~~~~~ 262 (374)
+. .|+.++ .+..|.+||+.... ..... ..|...+..+.|+|
T Consensus 192 --g~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 192 --GS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp --SS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECT
T ss_pred --CC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEEC
Confidence 22 355554 44779999997532 22222 24667899999999
Q ss_pred CCCceEEEecCC-----eEEEEEcCCCCCeEEEEEeee-cCCCCeEEEEECC--CCCEEEEEeCCCeEEEEEcc-CCeEE
Q 017296 263 SCNGGISGGADQ-----KIVLYNLDHSTGSCVIKKEIN-LERPGISGTSIRP--DSKIAATAGWDRRVRIYNYR-KGSAL 333 (374)
Q Consensus 263 ~~~~~~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~~~~sp--~~~~l~s~~~dg~v~iwd~~-~~~~~ 333 (374)
++..+++++.|+ .|.+||++.......+..... .....+..++|+| |++++++++.|++++||++. +++.+
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 999888888775 999999875411111111111 0111235689999 99999999999999999886 67777
Q ss_pred EEecccCCceEE-EEEeCCCCEEEEEe-CCC----cEEEecCC
Q 017296 334 AILKYHHATCNA-VSFSSDCKLMASAS-EDS----TVALWELY 370 (374)
Q Consensus 334 ~~~~~h~~~v~~-v~~sp~~~~las~s-~D~----~v~~W~~~ 370 (374)
..+..|...+.. ++|+|||+.|+.++ .++ .|..|++.
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 788888877876 79999999776554 444 45555543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=171.16 Aligned_cols=297 Identities=8% Similarity=0.016 Sum_probs=170.2
Q ss_pred CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeece-eeeEEeccCCccccceeeecccc---------CeE
Q 017296 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGRD---------GTV 88 (374)
Q Consensus 19 ~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~D---------~~v 88 (374)
..+.+++|+|+|+++++ +.|++|++||..+++....+..|... ..+..+++++ |+++|++++.| +.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccceeecceeeE
Confidence 34678999999998777 78999999999988765554433210 1366788887 67888888664 788
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.+||+.+++.. .+.....+ . . . .....+.+++ +.++.++
T Consensus 94 ~~~d~~~~~~~-----~l~~~~~~----------~---------~---------~-------~~~~~~SPdG-~~la~~~ 132 (723)
T 1xfd_A 94 VLSKIPHGDPQ-----SLDPPEVS----------N---------A---------K-------LQYAGWGPKG-QQLIFIF 132 (723)
T ss_dssp EEEESSSCCCE-----ECCCTTCC----------S---------C---------C-------CSBCCBCSST-TCEEEEE
T ss_pred EEEECCCCceE-----eccCCccc----------c---------c---------c-------ccccEECCCC-CEEEEEE
Confidence 89999887421 00000000 0 0 0 0000122333 4444444
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCC-CCCcCC-----CCCcceeEEEeeecCCCCCceEEEEEecC------------
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGG-SPNFSS-----KGRGMCMAVQAYLPSKSQGFVNVLAGYED------------ 230 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~gs~d------------ 230 (374)
. +.|.+||+.+++............ ..+... ...... ....+.|+ +. .|+.++.|
T Consensus 133 ~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~-~~~~~SpD---g~-~la~~~~~~~~~~~~~~~~~ 205 (723)
T 1xfd_A 133 E--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH-IAHWWSPD---GT-RLAYAAINDSRVPIMELPTY 205 (723)
T ss_dssp T--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS-EEEEECTT---SS-EEEEEEEECTTSCEEEECCC
T ss_pred C--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc-ceEEECCC---CC-EEEEEEECCCccceEEeecc
Confidence 3 689999999887544332211000 000000 000000 00123332 22 34444433
Q ss_pred ----------------------CcEEEEeccCCCCceeeeecC------ccCeEEEEEecCCCceEEEec----CCeEEE
Q 017296 231 ----------------------GSILVWDIRNPGIPLTAMKVH------LEPVLCLSIDESCNGGISGGA----DQKIVL 278 (374)
Q Consensus 231 ----------------------g~i~iwdl~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~s~s~----D~~i~l 278 (374)
..|++||+.... ....+..+ ...+..+.|+|++..+++.+. +..|.+
T Consensus 206 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred CCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 279999997543 22344433 567899999999987766543 368999
Q ss_pred EEcCCCCCeEEEEEeeecCCCCe----EEEEECCCCCEEEE--EeCCC------eEEEEE-ccCCe--EEEEecccCCce
Q 017296 279 YNLDHSTGSCVIKKEINLERPGI----SGTSIRPDSKIAAT--AGWDR------RVRIYN-YRKGS--ALAILKYHHATC 343 (374)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~v----~~~~~sp~~~~l~s--~~~dg------~v~iwd-~~~~~--~~~~~~~h~~~v 343 (374)
||++.......... .+...+ ..++|+|||+.|+. +..++ .|.+|| ...++ +...+..+...+
T Consensus 285 ~d~~~g~~~~~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 285 CDATTGVCTKKHED---ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EETTTCCEEEEEEE---ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred EeCCCCcceEEEEe---ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 99875432222111 111222 36899999997764 55677 466666 33333 144454444444
Q ss_pred EE-EEEeCCCCEEEEEeCC---CcEEEecCC
Q 017296 344 NA-VSFSSDCKLMASASED---STVALWELY 370 (374)
Q Consensus 344 ~~-v~~sp~~~~las~s~D---~~v~~W~~~ 370 (374)
.. ++|+|||+.|+..+.+ +.++||++.
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 44 6999999998766555 889999874
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-17 Score=144.80 Aligned_cols=276 Identities=10% Similarity=0.088 Sum_probs=162.5
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCC-CcEEEEeCc--ccce--eeeeeeeeceeeeEEeccCCccccceeee-ccccCeE
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTV--QHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGTV 88 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D-~~v~vWd~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~D~~v 88 (374)
..|...+.+++|+|+|++|++++.+ +.|++|++. +++. +..+..+ .....+++++ +++.++. +..++.|
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~--dg~~l~~~~~~~~~i 108 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDH--QGQFVFVGSYNAGNV 108 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECT--TSSEEEEEETTTTEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC---CCCcEEEEcC--CCCEEEEEecCCCeE
Confidence 4688899999999999988888776 999999987 4442 2232221 2455667776 5566654 4568999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+..+.. ...+.. ... ...... ..+ .++++++++++
T Consensus 109 ~~~d~~~~~~----~~~~~~----------~~~--------~~~~~~------------------~~~-s~dg~~l~~~~ 147 (343)
T 1ri6_A 109 SVTRLEDGLP----VGVVDV----------VEG--------LDGCHS------------------ANI-SPDNRTLWVPA 147 (343)
T ss_dssp EEEEEETTEE----EEEEEE----------ECC--------CTTBCC------------------CEE-CTTSSEEEEEE
T ss_pred EEEECCCCcc----cccccc----------ccC--------CCCceE------------------EEE-CCCCCEEEEec
Confidence 9999953210 000000 000 000000 001 12334556666
Q ss_pred cCCCeEEEEecCC-CceeE----EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 169 EQLSEVEIWDLNT-AERCT----RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 169 ~~d~~i~vWd~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
..++.|++||+.+ ++... .+... ....... ..+.+ .+...++++..++.|++||+.....
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~~p---dg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTV---------EGAGPRH---MVFHP---NEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECS---------TTCCEEE---EEECT---TSSEEEEEETTTTEEEEEESSCTTS
T ss_pred CCCCEEEEEEecCCCceeeecccccccC---------CCCCcce---EEECC---CCCEEEEEeCCCCEEEEEEecCCCC
Confidence 5678999999987 54322 11110 0001111 12333 2332345566899999999953211
Q ss_pred c---eeeee----cC--ccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE
Q 017296 244 P---LTAMK----VH--LEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 244 ~---~~~~~----~h--~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 313 (374)
. ..... ++ ...+..++|++++..++ +++.|+.|.+||++..++.......+..+. .+..++|+|++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYL 291 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEE
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEE
Confidence 1 11121 11 23566899999987776 555899999999974344333333333333 37889999999988
Q ss_pred EEEe-CCCeEEEEEcc--CCe--EEEEecccCCceEEEEEeCCCC
Q 017296 314 ATAG-WDRRVRIYNYR--KGS--ALAILKYHHATCNAVSFSSDCK 353 (374)
Q Consensus 314 ~s~~-~dg~v~iwd~~--~~~--~~~~~~~h~~~v~~v~~sp~~~ 353 (374)
++++ .++.|.+|++. +++ .+..+.. .....+++|.|+.+
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 8777 68999999554 553 3444443 24566788887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=156.51 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=93.1
Q ss_pred eecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 248 MKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
+.+|..+|.+++|+|+ +..+++++.||+|++||++.. ... .....|...+.+++|+|++++|++|+.||+|++||
T Consensus 145 ~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--~~~--~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VKV--CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--EEE--EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--cce--eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence 4568899999999987 677899999999999999754 222 12233556799999999999999999999999999
Q ss_pred ccCCeEEEEecccC-------CceEEEEEeCCCCEEEE-EeCCCc------EEEecCC
Q 017296 327 YRKGSALAILKYHH-------ATCNAVSFSSDCKLMAS-ASEDST------VALWELY 370 (374)
Q Consensus 327 ~~~~~~~~~~~~h~-------~~v~~v~~sp~~~~las-~s~D~~------v~~W~~~ 370 (374)
.+ ++....+..|. ..|.+++|++++.++++ ++.||. +++|++.
T Consensus 221 ~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 221 PT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp TT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred cC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 97 55555555443 38999999999987754 445543 8899985
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-15 Score=138.70 Aligned_cols=202 Identities=10% Similarity=0.086 Sum_probs=123.6
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCc-cCC-CCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-CGG-SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
++++++...++.+.+|++.+...+..+.... ... .+............ ..+.+ .+...+++...++.|++|++.
T Consensus 110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~sp---dg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 110 KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC-VRITP---DGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE-EEECT---TSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE-EEECC---CCCEEEEEeCCCCEEEEEEEc
Confidence 4566666678899999997644322221100 000 00000000001111 12333 343345556678999999987
Q ss_pred CCCC----c-e-------eeeecCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeee---cCCCCeEE
Q 017296 240 NPGI----P-L-------TAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEIN---LERPGISG 303 (374)
Q Consensus 240 ~~~~----~-~-------~~~~~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~---~~~~~v~~ 303 (374)
.... . + .....+......+.|+|++..++.++ .++.|.+|+++. +......... .+......
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~--g~~~~~~~~~~~~~~~~~~~~ 263 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD--GMLDEIQTVAADTVNAQGSGD 263 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET--TEEEEEEEEESCSSCCCCEEE
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC--CceEEeEEEecCCCCCCCccc
Confidence 5331 1 1 11122345678899999998777666 689999999973 3332222222 12245678
Q ss_pred EEECCCCCEEEEEeCC--CeEEEEEcc--CCe--EEEEecccCCceEEEEEeCCCCEEEEEe-CCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGWD--RRVRIYNYR--KGS--ALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~d--g~v~iwd~~--~~~--~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~v~~W~~~ 370 (374)
++|+||+++|+.+..+ ++|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|.++
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 9999999998666654 899999995 344 3444444 45778999999999888776 67999998664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=138.16 Aligned_cols=145 Identities=16% Similarity=0.115 Sum_probs=104.9
Q ss_pred EEEEe--cCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGY--EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs--~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++.++ .++.+++|.+.........+..+ ..+..+.++|++..++ +++.|+.+++|+++..++... .+..+...
T Consensus 99 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~ 174 (297)
T 2ojh_A 99 YAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGR 174 (297)
T ss_dssp EEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSC
T ss_pred EEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCc
Confidence 44444 33456666554322223334333 3588899999998777 788999999999765443322 23334557
Q ss_pred eEEEEECCCCCEEEEEe-CCCeEEEEEcc-CCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-----------CcEEEe
Q 017296 301 ISGTSIRPDSKIAATAG-WDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCKLMASASED-----------STVALW 367 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~-~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----------~~v~~W 367 (374)
+..++|+|++++|+.++ .|+.+++|++. .++....+..|...+..++|+|+|++|++++.| +.|++|
T Consensus 175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~ 254 (297)
T 2ojh_A 175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM 254 (297)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence 89999999999887666 59999999986 566677788888899999999999999988766 569999
Q ss_pred cCCCC
Q 017296 368 ELYPP 372 (374)
Q Consensus 368 ~~~~~ 372 (374)
++...
T Consensus 255 d~~~~ 259 (297)
T 2ojh_A 255 DMDGG 259 (297)
T ss_dssp ETTSC
T ss_pred ecCCC
Confidence 98643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=159.81 Aligned_cols=295 Identities=11% Similarity=0.030 Sum_probs=171.8
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
.|.+++|+|||++|++++. +.|.+||+.+++ .+..+..|. ..+..++|++ ++++++.++ ++.|++||+.+++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~--~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGE--GFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSS--SCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCC--cccccccCCC--CCCEEEEEe-CCcEEEEecCCCC
Confidence 4899999999999998886 999999998772 333443342 3467788887 678888776 4699999998763
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC------
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL------ 171 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------ 171 (374)
... +... +...+ . .+........+... .....+.+++ ++++++....
T Consensus 184 ~~~-----~~~~--~~~~~--~---------~g~~~~v~~~~~~~--------~~~~~~SpDg-~~l~~~~~d~~~~~~~ 236 (741)
T 2ecf_A 184 QMQ-----LTAD--GSTTI--G---------NGIAEFVADEEMDR--------HTGYWWAPDD-SAIAYARIDESPVPVQ 236 (741)
T ss_dssp EEE-----CCCC--CCSSE--E---------ESCCCHHHHHHSCC--------CCSEEECTTS-SCEEEEEEECTTSCEE
T ss_pred EEE-----eccC--Cccce--e---------ccccceeeeecccc--------ccceEECCCC-CEEEEEEEcCCCCceE
Confidence 210 0000 00000 0 00000000000000 0000111222 2333322211
Q ss_pred --------------------------CeEEEEecCC-CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEE
Q 017296 172 --------------------------SEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (374)
Q Consensus 172 --------------------------~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..|.+||+.+ ++........ ...... ....+ ++ +. .+
T Consensus 237 ~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~-~~~~~-pD---g~-~l 300 (741)
T 2ecf_A 237 KRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK----------EQDIYL-ARVNW-RD---PQ-HL 300 (741)
T ss_dssp EEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS----------CSSEEE-EEEEE-EE---TT-EE
T ss_pred ecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC----------CcceEE-EEEEe-CC---CC-EE
Confidence 1788889988 7643222110 001111 11234 43 32 34
Q ss_pred EEEe-----cCCcEEEEeccCCCCceeeeecCcc----CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 225 LAGY-----EDGSILVWDIRNPGIPLTAMKVHLE----PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 225 ~~gs-----~dg~i~iwdl~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
+.++ .+..|.+||+.+. .....+..+.. .+..+.|++++..+++++.|+.++||.++.... ...+.
T Consensus 301 ~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~----~~~l~ 375 (741)
T 2ecf_A 301 SFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK----AAALT 375 (741)
T ss_dssp EEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC----EEESC
T ss_pred EEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC----eeeee
Confidence 4333 3578999999764 33444444433 456889999998788889999999998764322 12334
Q ss_pred cCCCCeEEE-EECCCCCEEE-EEeCCC--eEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEEeCC----CcEEE
Q 017296 296 LERPGISGT-SIRPDSKIAA-TAGWDR--RVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASED----STVAL 366 (374)
Q Consensus 296 ~~~~~v~~~-~~sp~~~~l~-s~~~dg--~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D----~~v~~ 366 (374)
.+...+..+ .|+|+++.|+ +++.++ +++||++.. ++....+.. ...+.+++|+|||++|+....+ ..+.+
T Consensus 376 ~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l 454 (741)
T 2ecf_A 376 HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL 454 (741)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence 445567776 5999998775 555555 899999864 555666664 6678899999999988765433 35677
Q ss_pred ecC
Q 017296 367 WEL 369 (374)
Q Consensus 367 W~~ 369 (374)
|+.
T Consensus 455 ~~~ 457 (741)
T 2ecf_A 455 FRA 457 (741)
T ss_dssp EET
T ss_pred EEc
Confidence 764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=157.33 Aligned_cols=296 Identities=11% Similarity=0.047 Sum_probs=170.0
Q ss_pred CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC---
Q 017296 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN--- 95 (374)
Q Consensus 19 ~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~--- 95 (374)
..|.+++|+|+ ..++.+ .|+++++||+.+++.... ..+. ..+..+++++ ++++++. +.|+.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~--~~~~~~~~Sp--dG~~la~-~~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTN--EETASLDFSP--VGDRVAY-VRNHNLYIARGGKLGE 153 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCT--TCCTTCEECT--TSSEEEE-EETTEEEEEECBCTTS
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCc--ccccCCcCCC--CCCEEEE-EECCeEEEEecCcccc
Confidence 67999999999 554443 359999999988765332 2222 2355667777 6778887 4789999999987
Q ss_pred --CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc-----
Q 017296 96 --GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG----- 168 (374)
Q Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 168 (374)
++.... ........ . .+.. ...-+... .....+.+ +++++++++
T Consensus 154 ~~g~~~~~----~~~~~~~~----------~----~g~~--~~~ee~~~--------~~~~~~Sp-Dg~~la~~~~d~~~ 204 (706)
T 2z3z_A 154 GMSRAIAV----TIDGTETL----------V----YGQA--VHQREFGI--------EKGTFWSP-KGSCLAFYRMDQSM 204 (706)
T ss_dssp CCCCCEES----CSCCBTTE----------E----ESSC--CGGGCTTC--------CCSEEECT-TSSEEEEEEEECTT
T ss_pred cCCCcEEe----ccCCCCCe----------E----cccc--hhhhhcCC--------CceEEECC-CCCEEEEEEECCCC
Confidence 642100 00000000 0 0000 00000000 00000112 223333332
Q ss_pred ---------------------------cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCc
Q 017296 169 ---------------------------EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGF 221 (374)
Q Consensus 169 ---------------------------~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (374)
..+..|.+||+.+++........ .. ... .....+.++ +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--------~~--~~~-~~~~~~spd---g~ 270 (706)
T 2z3z_A 205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE--------PK--EKF-LTNLSWSPD---EN 270 (706)
T ss_dssp SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS--------CT--TCE-EEEEEECTT---SS
T ss_pred CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC--------CC--cee-EeeEEEECC---CC
Confidence 13468999999988643221100 00 011 111234443 22
Q ss_pred eEEEEEecCC-----cEEEEeccCCCCceeeee-cCc---cCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEE
Q 017296 222 VNVLAGYEDG-----SILVWDIRNPGIPLTAMK-VHL---EPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVI 290 (374)
Q Consensus 222 ~~~~~gs~dg-----~i~iwdl~~~~~~~~~~~-~h~---~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~ 290 (374)
.+++++.++ .|.+||+.+......... .+. ..+..+.|+| ++..+++++.|+.+++|.++.... ..
T Consensus 271 -~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~-~~- 347 (706)
T 2z3z_A 271 -ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR-LI- 347 (706)
T ss_dssp -EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC-EE-
T ss_pred -EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC-EE-
Confidence 466666664 899999976422222221 122 2346788999 888888899999999998863222 11
Q ss_pred EEeeecCCCCeEE-EEECCCCCEEEEEeC-CC----eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC---
Q 017296 291 KKEINLERPGISG-TSIRPDSKIAATAGW-DR----RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED--- 361 (374)
Q Consensus 291 ~~~~~~~~~~v~~-~~~sp~~~~l~s~~~-dg----~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D--- 361 (374)
..+..+...+.. ++|+|+++.|+.++. ++ .|..||+.+++ ...+. |...+.+++|+|||++|+.+..+
T Consensus 348 -~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~ 424 (706)
T 2z3z_A 348 -RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTV 424 (706)
T ss_dssp -EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSC
T ss_pred -EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCC
Confidence 223334445666 799999998765554 44 66667776665 44444 77789999999999988776443
Q ss_pred -CcEEEecCCC
Q 017296 362 -STVALWELYP 371 (374)
Q Consensus 362 -~~v~~W~~~~ 371 (374)
+.|++|++..
T Consensus 425 p~~i~l~d~~~ 435 (706)
T 2z3z_A 425 PRKVTVTNIGK 435 (706)
T ss_dssp SCEEEEEESSS
T ss_pred CcEEEEEECCC
Confidence 4599999754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-15 Score=135.65 Aligned_cols=285 Identities=9% Similarity=0.084 Sum_probs=158.1
Q ss_pred CCCceeEEEEeCCCCEEEEecCC----CcEEEEeCcc--cce--eeeeeeeeceeeeEEeccCCccccceeee-ccccCe
Q 017296 17 HRASVTDVCFHQTKPILFAGTTG----GELRIWDTVQ--HRT--VSSSWVHSAAHGIVSVATGPSIGLNKVIS-QGRDGT 87 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D----~~v~vWd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~D~~ 87 (374)
|......|+|+|+|++|++++.+ +.|.+|++.. ++. +.....+ ......+++ +++.+++ ...+++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~--~~~p~~~~~----dg~~l~~~~~~~~~ 121 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM--GADPCYLTT----NGKNIVTANYSGGS 121 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS--SSCEEEEEE----CSSEEEEEETTTTE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC--CCCcEEEEE----CCCEEEEEECCCCE
Confidence 77788889999999999999886 7999998764 332 2222111 112333344 3455554 447899
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|.+|++..+........... . . .. .+.. .......+. ...+ .+++++++++
T Consensus 122 v~~~~~~~~g~~~~~~~~~~-~---------~--g~-------~~~~--~~~~~~~~~-------~~~~-spdg~~l~~~ 172 (361)
T 3scy_A 122 ITVFPIGQDGALLPASDVIE-F---------K--GS-------GPDK--ERQTMPHLH-------CVRI-TPDGKYLLAD 172 (361)
T ss_dssp EEEEEBCTTSCBCSCSEEEE-C---------C--CC-------CSCT--TTCSSCCEE-------EEEE-CTTSSEEEEE
T ss_pred EEEEEeCCCCcCcccceeEE-c---------c--CC-------CCCc--cccCCCcce-------EEEE-CCCCCEEEEE
Confidence 99999975432111100000 0 0 00 0000 000000000 0011 2334556666
Q ss_pred ccCCCeEEEEecCCCce------eEEe---ccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 168 GEQLSEVEIWDLNTAER------CTRL---HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
...++.|++|++..... +... .... ........ ...|.++ +...+++...++.|.+||+
T Consensus 173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~---~~~~spd---g~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK------VAPGSGPR---HLIFNSD---GKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE------CCTTCCEE---EEEECTT---SSEEEEEETTTCEEEEEEE
T ss_pred eCCCCEEEEEEEcCCCCcccccceeeccccccee------cCCCCCCe---EEEEcCC---CCEEEEEcCCCCeEEEEEe
Confidence 66678999998875432 2111 0000 00000011 1124332 3323344447899999999
Q ss_pred cCCCC-ceeee---ecCccCeEEEEEecCCCceEEEec--CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 239 RNPGI-PLTAM---KVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 239 ~~~~~-~~~~~---~~h~~~v~~~~~~~~~~~~~s~s~--D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
..... .+..+ ..+......+.|+|++..++.+.. +++|.+|+++..++.......... ...+..++|+||+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKY 319 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCE
Confidence 74211 11212 223455689999999998866555 589999999754554433333333 345778999999998
Q ss_pred EEEEe-CCCeEEEEEc--cCCeEEEEe-cccCCceEEEEEe
Q 017296 313 AATAG-WDRRVRIYNY--RKGSALAIL-KYHHATCNAVSFS 349 (374)
Q Consensus 313 l~s~~-~dg~v~iwd~--~~~~~~~~~-~~h~~~v~~v~~s 349 (374)
|++++ .++.|.+|++ .+++..... ..+...+.||+|.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 88877 6799999755 456644332 2244678899886
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-16 Score=138.44 Aligned_cols=281 Identities=10% Similarity=0.050 Sum_probs=156.8
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccce-eeeccccCeEEEEecCCCCCCCC
Q 017296 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNK-VISQGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~vrvwd~~~~~~~~~ 101 (374)
.+++++++.++++++.+++|.+||..+++.+..+..+. ......+++++ +++. +++...+++|.+||+.+++...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~~t~~~~~- 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF- 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-CCCCceeEECC--CCCEEEEEeCCCCcEEEEeCCCCcEEE-
Confidence 45788889999999999999999999888766654332 01244566666 4554 4566788999999998763210
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC-----------
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ----------- 170 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 170 (374)
.+.... .+... ...+.. ..+. +++++++++...
T Consensus 80 ---~~~~~~----------~~~~~-----------~~~~~~-----------~~~s-pdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 80 ---HANLSS----------VPGEV-----------GRSMYS-----------FAIS-PDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp ---EEESCC----------STTEE-----------EECSSC-----------EEEC-TTSSEEEEEEEEEEECSSCEEEC
T ss_pred ---EEEccc----------ccccc-----------cccccc-----------eEEC-CCCCEEEEEcccccccccccccC
Confidence 000000 00000 000000 0011 223444444432
Q ss_pred CCeEEEEecCCCceeE---EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 171 LSEVEIWDLNTAERCT---RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|.+||+++++... ..... ....++ .+.+ .+. ++++ ++.|.+||+++. .....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~~---~~s~---dg~--l~~~--~~~i~~~d~~~~-~~~~~ 181 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMP-----------RQVYLM---RAAD---DGS--LYVA--GPDIYKMDVKTG-KYTVA 181 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECC-----------SSCCCE---EECT---TSC--EEEE--SSSEEEECTTTC-CEEEE
T ss_pred CCeEEEEECCCccccceeeeccCC-----------Ccccce---eECC---CCc--EEEc--cCcEEEEeCCCC-ceecc
Confidence 4799999998854322 22111 011111 1322 233 3444 344999999753 33333
Q ss_pred eecCc--c----------------------CeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 248 MKVHL--E----------------------PVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 248 ~~~h~--~----------------------~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+..+. . ....+.+.+++.... .......+..+|....+ ... ...........
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 258 (349)
T 1jmx_B 182 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THT-QEFADLTELYF 258 (349)
T ss_dssp ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--EEE-EEEEECSSCEE
T ss_pred ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc--EEe-cccccCCCcce
Confidence 33221 0 122233332211000 00001112223333221 111 11112334578
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 303 GTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 303 ~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.++|+| ++++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.|+.|++||...
T Consensus 259 ~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 259 TGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred eeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 899999 99999887 89999999999998877763 34578899999999888888999999999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=135.89 Aligned_cols=269 Identities=9% Similarity=0.056 Sum_probs=160.9
Q ss_pred CCeEEee-cCCC-ceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeee---ceeeeEEeccCCccccceeeec
Q 017296 9 DPVAVLR-GHRA-SVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~-gH~~-~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
+.+..+. ++.. .+..++|+|+|+.+ ++++.++.|.+||+.+++.+..+.... .......+++++ ++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~ 99 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIY 99 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC--CCCEEEEE
Confidence 3444444 3322 47899999999765 567778999999998887765544211 011344566666 56677766
Q ss_pred c------------ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 83 G------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 83 ~------------~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
+ .++.|++||+.+++... .+.. ... ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~----~~~~----------~~~-----------~~~~-------------- 140 (337)
T 1pby_B 100 ESPVRLELTHFEVQPTRVALYDAETLSRRK----AFEA----------PRQ-----------ITML-------------- 140 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEEE----EEEC----------CSS-----------CCCE--------------
T ss_pred ecccccccccccccCceEEEEECCCCcEEE----EEeC----------CCC-----------ccee--------------
Confidence 4 57999999997653110 0000 000 0000
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce---EEEEE
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV---NVLAG 227 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g 227 (374)
.+.+++ ++++++ ++.|.+||+++++....+..........+++.+..+.. .. ..+.. ....+
T Consensus 141 ----~~s~dg-~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~------~~-~~~~~~~~~~~~~ 205 (337)
T 1pby_B 141 ----AWARDG-SKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN------QH-ESSGVMATPFYTA 205 (337)
T ss_dssp ----EECTTS-SCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC------CC-TTTTEEEEEEEEE
T ss_pred ----EECCCC-CEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEee------ec-cCCCceeeeeecc
Confidence 011223 334444 46899999999887666543321111122222221110 00 00000 01112
Q ss_pred ecCC----------cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 228 YEDG----------SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 228 s~dg----------~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
..++ .|.+||+++.......+..+...+..+.+++++..++++ ++.|.+||++.. +.. ..+...
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~--~~~--~~~~~~ 279 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN--ASI--KRVPLP 279 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT--EEE--EEEECS
T ss_pred ccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC--cCc--ceecCC
Confidence 2222 689999976433223344566678899999999888777 799999998643 222 122222
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 340 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~ 340 (374)
..+.+++|+|++++|++++.++.|++||+.+++.+..+..+.
T Consensus 280 -~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 280 -HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp -SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred -CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 357789999999999888999999999999999888776553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-15 Score=134.52 Aligned_cols=190 Identities=8% Similarity=0.044 Sum_probs=125.2
Q ss_pred ceEEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC-C--cEEEEe
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-G--SILVWD 237 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-g--~i~iwd 237 (374)
+++++++..++.|.+||+.+++. ...+...... .. .+ .+.+ .+. .++++..+ + .|.+||
T Consensus 52 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---------~~-~~---~~s~---dg~-~l~~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 52 SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS---------MA-DV---DITP---DDQ-FAVTVTGLNHPFNMQSYS 114 (331)
T ss_dssp CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC---------CC-CE---EECT---TSS-EEEECCCSSSSCEEEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCceeEEecccCCCC---------cc-ce---EECC---CCC-EEEEecCCCCcccEEEEE
Confidence 45666666678999999999886 4444332110 00 01 1222 222 35555444 3 899999
Q ss_pred ccCCCCceeeeecCccCeEEEEEecCCCceEEE-ecCCe-EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE-
Q 017296 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA- 314 (374)
Q Consensus 238 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-s~D~~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~- 314 (374)
++. ......+.. ......+.|+|++..++.+ ..++. |.+|+++.....................++|+|++++++
T Consensus 115 ~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 192 (331)
T 3u4y_A 115 FLK-NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV 192 (331)
T ss_dssp TTT-TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred CCC-CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence 975 334444443 4456899999998766554 55578 999999743222111111112334578999999999655
Q ss_pred EEeCCCeEEEEEccCCeE---EEEecccCCceEEEEEeCCCCEEEE-EeCCCcEEEecCCC
Q 017296 315 TAGWDRRVRIYNYRKGSA---LAILKYHHATCNAVSFSSDCKLMAS-ASEDSTVALWELYP 371 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~---~~~~~~h~~~v~~v~~sp~~~~las-~s~D~~v~~W~~~~ 371 (374)
++..+++|++||+.+++. +..+.. ...+..++|+|||++|+. ...++.|.+|++..
T Consensus 193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 193 ANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp EETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred EeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 455689999999998887 777764 467788999999996654 45688999999864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-15 Score=136.50 Aligned_cols=142 Identities=10% Similarity=0.049 Sum_probs=94.3
Q ss_pred cCCcEEEEecc-CCCC-ceeeee--cCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEE-EEeee---c---
Q 017296 229 EDGSILVWDIR-NPGI-PLTAMK--VHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVI-KKEIN---L--- 296 (374)
Q Consensus 229 ~dg~i~iwdl~-~~~~-~~~~~~--~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~-~~~~~---~--- 296 (374)
.++.|++||+. +... .+..+. .|...+..+.|+|++..++.++. +++|.+|+++..++.... ...+. .
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 35667777765 2211 111222 13456888999999988877664 789999998754554321 11111 1
Q ss_pred -CCC------CeEEEE-ECCCCCEEEEEeCC-C-----eEEEEEcc-CCeEEE---EecccCCceEEEEEeC---CCCEE
Q 017296 297 -ERP------GISGTS-IRPDSKIAATAGWD-R-----RVRIYNYR-KGSALA---ILKYHHATCNAVSFSS---DCKLM 355 (374)
Q Consensus 297 -~~~------~v~~~~-~sp~~~~l~s~~~d-g-----~v~iwd~~-~~~~~~---~~~~h~~~v~~v~~sp---~~~~l 355 (374)
+.. .+..++ |+|||++|+++..+ . +|++|++. +++... ....+...+..++|+| ||++|
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l 324 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM 324 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence 111 477899 99999988766543 2 89999996 565433 2334555677889999 89999
Q ss_pred EEEeCC-CcEEEecCC
Q 017296 356 ASASED-STVALWELY 370 (374)
Q Consensus 356 as~s~D-~~v~~W~~~ 370 (374)
++++.+ ++|++|++.
T Consensus 325 ~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 325 AITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEECSSSCEEEEEEEE
T ss_pred EEEEcCCCeEEEEEEc
Confidence 998765 899999875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=153.41 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=114.2
Q ss_pred EEEEEecCCcEEEEeccCCC---------Cceee-----eecCccCeEEEEEecCCCceE----EEecCCeEEEEEcCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPG---------IPLTA-----MKVHLEPVLCLSIDESCNGGI----SGGADQKIVLYNLDHS 284 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~---------~~~~~-----~~~h~~~v~~~~~~~~~~~~~----s~s~D~~i~lwd~~~~ 284 (374)
.+++++.|+ |++|+..... ..... ...+..+|.+++|++++..++ +++.|++|++||++..
T Consensus 50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF 128 (434)
T ss_dssp EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence 577777777 9998763100 00110 112456799999999999998 8899999999998642
Q ss_pred -----CC-eE-EEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEE
Q 017296 285 -----TG-SC-VIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 356 (374)
Q Consensus 285 -----~~-~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 356 (374)
.. .. ........|...|.+++|+|+ +.+|++++.||+|++||+++++......+|...|.+++|+|+|++||
T Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~la 208 (434)
T 2oit_A 129 SNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLA 208 (434)
T ss_dssp HCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEE
T ss_pred ccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEE
Confidence 10 10 112233446678999999998 88999999999999999998877766778999999999999999999
Q ss_pred EEeCCCcEEEecCC
Q 017296 357 SASEDSTVALWELY 370 (374)
Q Consensus 357 s~s~D~~v~~W~~~ 370 (374)
+|+.|++|++|+..
T Consensus 209 sgs~dg~v~iwd~~ 222 (434)
T 2oit_A 209 VGKQNGTVVQYLPT 222 (434)
T ss_dssp EEETTSCEEEECTT
T ss_pred EEcCCCcEEEEccC
Confidence 99999999999975
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=145.58 Aligned_cols=317 Identities=14% Similarity=0.076 Sum_probs=173.6
Q ss_pred CCCCCeEEeecCCCceeE-----EEEeCCCCEEEEecC-CC--cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccc
Q 017296 6 PPPDPVAVLRGHRASVTD-----VCFHQTKPILFAGTT-GG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN 77 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~-----l~~~~~~~~l~s~s~-D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (374)
....++..|..|...... .+|+|||+.|+.++. ++ .|.+||+.+++.......+. ..+....+++ +++
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~sp--dg~ 93 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--DNTFGGFLSP--DDD 93 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--BCSSSCEECT--TSS
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--CCccceEEcC--CCC
Confidence 334677788888876666 899999998887776 66 48888988877654433332 1222455766 678
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
+|+.++.++.|++||+.+++... .................+..... ...... . ....
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~----~~~~~~~~~~~~~~~~~~dg~~l--------~~~~~~---~--------~~~~ 150 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENV----VYQVPAEWVGYGTWVANSDCTKL--------VGIEIR---R--------EDWV 150 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEE----EEECCTTEEEEEEEEECTTSSEE--------EEEEEE---G--------GGCC
T ss_pred EEEEEeCCCeEEEEECCCCccee----eeechhhcccccceeECCCCCee--------cccccc---C--------cccc
Confidence 89999989999999998874210 00000000000000000000000 000000 0 0000
Q ss_pred CCCCc--eE-EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeec-CCCCCceEEEEEec----
Q 017296 158 AEGPK--YM-AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP-SKSQGFVNVLAGYE---- 229 (374)
Q Consensus 158 ~~~~~--~~-~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gs~---- 229 (374)
+.... +. ......+..|.+||+.+++......... .. ....+.| + + ..++..+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-------------~~-~~~~~sp~d---g-~~l~~~~~~~~~ 212 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-------------WL-GHPIYRPYD---D-STVAFCHEGPHD 212 (388)
T ss_dssp CCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-------------CE-EEEEEETTE---E-EEEEEEECSCTT
T ss_pred cccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-------------cc-cccEECCCC---C-CEEEEEEecCCC
Confidence 00000 00 0122334689999999886433322110 00 1112333 2 2 23444443
Q ss_pred --CCcEEEEeccCCCCceeeeecCc--cCeEEEEEecCCCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCC-
Q 017296 230 --DGSILVWDIRNPGIPLTAMKVHL--EPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERP- 299 (374)
Q Consensus 230 --dg~i~iwdl~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~- 299 (374)
...|.++|+.. . ....+..+. ..+....|+|++..++..+.+ ..|.+||++........ .......
T Consensus 213 ~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~ 288 (388)
T 3pe7_A 213 LVDARMWLINEDG-T-NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT--SMPACSHL 288 (388)
T ss_dssp TSSCSEEEEETTS-C-CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE--EECCEEEE
T ss_pred CCcceEEEEeCCC-C-ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE--cCCCceee
Confidence 23677777753 2 233344444 357788999999877654432 24999998755322221 1111000
Q ss_pred --CeEEEEECCCCCEEEEE---------eCCCeEEEEEccCCeEEEEecccCC-----------ceEEEEEeCCCCEEEE
Q 017296 300 --GISGTSIRPDSKIAATA---------GWDRRVRIYNYRKGSALAILKYHHA-----------TCNAVSFSSDCKLMAS 357 (374)
Q Consensus 300 --~v~~~~~sp~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~~h~~-----------~v~~v~~sp~~~~las 357 (374)
.....+|+|||+.|+.. ..+..|.+||+.+++. ..+..|.. .+.+++|+|||+.|+.
T Consensus 289 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 289 MSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred eecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 01123799999987743 4567999999988764 45555655 5788899999997776
Q ss_pred Ee-CCCcEEEecCCCC
Q 017296 358 AS-EDSTVALWELYPP 372 (374)
Q Consensus 358 ~s-~D~~v~~W~~~~~ 372 (374)
++ .++...||.+..+
T Consensus 368 ~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 368 TSDVHGKPALYLATLP 383 (388)
T ss_dssp EECTTSSCEEEEEECC
T ss_pred EecCCCceeEEEEECC
Confidence 54 6888889877544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-14 Score=131.32 Aligned_cols=198 Identities=16% Similarity=0.063 Sum_probs=131.7
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEE-ecCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG-YEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-s~dg~i~iwdl~~ 240 (374)
++++++...++.|.+||+++++.+..+....... +.. ..........+.++ +...++++ ..++.|.+||+++
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~s~d---g~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-TEE---VRPLQPRELVADDA---TNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-CSS---CCCCEEEEEEEETT---TTEEEEEEESSSCEEEEEETTT
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-ccc---cCCCCCceEEECCC---CCEEEEEecCCCceEEEEcCCC
Confidence 4556666677899999999998776664321100 000 00000001123332 33223333 3588999999975
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee--ecCCCCeEEEEECCCCCEEEEEeC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI--NLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
......+..+...+..+.+++++..++.++.++.|.+||+... ........ ..+...+..++|+|++++++.++.
T Consensus 174 -~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 174 -IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN--KILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp -TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT--EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred -CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC--eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 3444555545666888999999998999999999999998654 22221111 113445778999999997766655
Q ss_pred -CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCCC
Q 017296 319 -DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELYP 371 (374)
Q Consensus 319 -dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~~ 371 (374)
++.|.+||..+++.+..+..+. ...++|+|+|+++ ++...|+.|.+||...
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 5999999999998887776443 2568999999955 5555799999999864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-14 Score=129.53 Aligned_cols=268 Identities=14% Similarity=0.191 Sum_probs=151.0
Q ss_pred eecCCCceeEEEEeCCCCEEEEecC---CCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeecc-ccCe
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTT---GGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGT 87 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~---D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~ 87 (374)
...+......|+|+|+|+ |++++. ++.|.+||+.+++. +..+..+. .....+++++ ++++|++++ .+++
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~p~~~a~sp--dg~~l~~~~~~~~~ 109 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG--TPPAYVAVDE--ARQLVYSANYHKGT 109 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--CCCSEEEEET--TTTEEEEEETTTTE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--CCCEEEEECC--CCCEEEEEeCCCCE
Confidence 345667788899999999 555543 68999999976652 22222222 2345566766 667777666 7899
Q ss_pred EEEEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 88 VKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 88 vrvwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+++|++.. +... .+.. + ..... .+. .......+. ...+.+++ + +++
T Consensus 110 v~v~~~~~~g~~~-----~~~~-------~--~~~~~-------~p~---~~~~~~~~~-------~~~~spdg-~-l~v 156 (347)
T 3hfq_A 110 AEVMKIAADGALT-----LTDT-------V--QHSGH-------GPR---PEQDGSHIH-------YTDLTPDN-R-LAV 156 (347)
T ss_dssp EEEEEECTTSCEE-----EEEE-------E--ECCCC-------CSS---TTCSSCCEE-------EEEECTTS-C-EEE
T ss_pred EEEEEeCCCCCee-----ecce-------e--ecCCC-------CCC---ccccCCCce-------EEEECCCC-c-EEE
Confidence 99999963 2110 0000 0 00000 000 000000000 00122333 3 556
Q ss_pred cccCCCeEEEEecC-CCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 167 AGEQLSEVEIWDLN-TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
+...++.|++||+. +++... ...... ..+.. ... ..+.+ .+...+++...++.|.+|++......+
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~-~~~~~~-------~~g~~-p~~-~~~sp---dg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSE-QSVLTM-------EAGFG-PRH-LVFSP---DGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEE-EEEEEC-------CTTCC-EEE-EEECT---TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EeCCCCEEEEEEECCCCcEEE-eeeEEc-------CCCCC-Cce-EEECC---CCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 66667899999998 454221 110000 00000 001 12433 233345557788999999987421111
Q ss_pred ---eeeecCc------cCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 246 ---TAMKVHL------EPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 246 ---~~~~~h~------~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
..+.... ..+..++|+|++..+ ++...++.|.+|+++.. +.......+..+...+..++|+||+++|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-GHLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-GCEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-CcEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 2222222 347889999999876 55667999999999632 233333334444445789999999998888
Q ss_pred EeCC-CeEEEEEc--cCCeEE
Q 017296 316 AGWD-RRVRIYNY--RKGSAL 333 (374)
Q Consensus 316 ~~~d-g~v~iwd~--~~~~~~ 333 (374)
++.+ +.|.+|++ .+++..
T Consensus 303 ~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 303 VNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTTEEEEEEECTTTCCEE
T ss_pred EEcCCCcEEEEEEeCCCCeEE
Confidence 7765 89999955 456543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=148.29 Aligned_cols=317 Identities=8% Similarity=-0.024 Sum_probs=163.9
Q ss_pred CCeEEeecCCC---ceeEEEEeCCCCEEEEecCC---------CcEEEEeCcccceeeeeeeee-ceeeeEEeccCCccc
Q 017296 9 DPVAVLRGHRA---SVTDVCFHQTKPILFAGTTG---------GELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIG 75 (374)
Q Consensus 9 ~~~~~l~gH~~---~V~~l~~~~~~~~l~s~s~D---------~~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (374)
++...+.+|.. .|.+++|+|||++|++++.+ +.+.+||+.+++. ..+..+. ....+..++|++ +
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP--d 124 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP--K 124 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS--S
T ss_pred cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC--C
Confidence 55667777776 49999999999999998765 7788999988765 2222111 111255677877 6
Q ss_pred cceeeeccccCeEEEEecCCCCCCCCCceeeeec-c--e--ee--------------eeeeeeccccccccccCCCCccc
Q 017296 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN-S--Y--HF--------------CKLSLVKEPYANAKQANEPKDCY 136 (374)
Q Consensus 76 ~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~-~--~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 136 (374)
+++++.++. +.|++||+.+++.. .+... . . +. ..+.+. +..........
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~-----~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~---- 192 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAI-----RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAI---- 192 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCE-----EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEE----
T ss_pred CCEEEEEEC-CeEEEEECCCCceE-----EEecCCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEE----
Confidence 788888775 79999999887431 11000 0 0 00 000000 00000000000
Q ss_pred ccccCceeecCCCCCCCCCCCCCCCceEEE--cc--cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 137 EREVGETVDTDSLCDSKDDVPAEGPKYMAV--AG--EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
.............. .. . .+....+.. .| ..+.+|.+||+.+++....+..+.. ... .... +....
T Consensus 193 ~~~~~~~~~~~~~~--~~-~-~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~-----~~~-~~~~-~~~~~ 261 (723)
T 1xfd_A 193 NDSRVPIMELPTYT--GS-I-YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD-----PRM-REYY-ITMVK 261 (723)
T ss_dssp ECTTSCEEEECCCS--SS-S-SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC-----GGG-SSEE-EEEEE
T ss_pred CCCccceEEeeccC--Cc-C-CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc-----CCC-ccce-eEEEE
Confidence 00000000000000 00 0 000000000 01 1134799999998875444432100 000 0111 11123
Q ss_pred eecCCCCCceEEEEEe----cCCcEEEEeccCCCCceeeeec-CccCe----EEEEEecCCCceEE--EecCC------e
Q 017296 213 YLPSKSQGFVNVLAGY----EDGSILVWDIRNPGIPLTAMKV-HLEPV----LCLSIDESCNGGIS--GGADQ------K 275 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs----~dg~i~iwdl~~~~~~~~~~~~-h~~~v----~~~~~~~~~~~~~s--~s~D~------~ 275 (374)
+.++ +. .+++.+ .+..|.+||+.+. .....+.. +...+ ..+.|+|++..++. +..|+ .
T Consensus 262 ~SpD---g~-~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 262 WATS---TK-VAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp ESSS---SE-EEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred EeCC---Ce-EEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 4443 32 454443 2367999999764 33333333 33333 37889999987764 45677 4
Q ss_pred EEEEE-cCCCCCeEEEEEeeecCCCCeEE-EEECCCCCEEEEEeCC---CeEEEEEccCCe--EEEEecc---cCCceEE
Q 017296 276 IVLYN-LDHSTGSCVIKKEINLERPGISG-TSIRPDSKIAATAGWD---RRVRIYNYRKGS--ALAILKY---HHATCNA 345 (374)
Q Consensus 276 i~lwd-~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~~~d---g~v~iwd~~~~~--~~~~~~~---h~~~v~~ 345 (374)
|.+|| .......+. ..+......+.. ++|+||++.|+..+.+ ++++||++.... ....+.. |...+..
T Consensus 337 l~~~d~~~~~~~~~~--~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNI--QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS 414 (723)
T ss_dssp EEEECSSCCSSSCCC--CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred EEEEeccCCCCccce--eEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEE
Confidence 55566 222210000 111112223444 6899999998766555 889999986432 2333443 6677889
Q ss_pred EEEeCCCCEEEEE
Q 017296 346 VSFSSDCKLMASA 358 (374)
Q Consensus 346 v~~sp~~~~las~ 358 (374)
++|+|||++|+..
T Consensus 415 ~~~spdg~~l~~~ 427 (723)
T 1xfd_A 415 ASFSHSMDFFLLK 427 (723)
T ss_dssp EEECTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999977754
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.9e-16 Score=153.09 Aligned_cols=291 Identities=7% Similarity=-0.043 Sum_probs=164.3
Q ss_pred eEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeece-eeeEEeccCCccccceeeeccc---------cCeEEEE
Q 017296 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIVSVATGPSIGLNKVISQGR---------DGTVKCW 91 (374)
Q Consensus 22 ~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~---------D~~vrvw 91 (374)
..++|+|+|.+++++ .|++|++||..+++....+..|... ..+..+++++ |+++|++++. |++|++|
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEE
Confidence 368999999766665 5999999999988765544333210 1256778887 7788887765 7999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|+.+++...... +. . .. . ...+.+++ +.++.+. +
T Consensus 96 d~~~g~~~~~~~--l~-~-------------~~---------~------------------~~~~SPDG-~~la~~~--~ 129 (719)
T 1z68_A 96 DLSNGEFVRGNE--LP-R-------------PI---------Q------------------YLCWSPVG-SKLAYVY--Q 129 (719)
T ss_dssp ETTTTEECCSSC--CC-S-------------SB---------C------------------CEEECSST-TCEEEEE--T
T ss_pred ECCCCcccccee--cC-c-------------cc---------c------------------cceECCCC-CEEEEEE--C
Confidence 998874310000 00 0 00 0 00122333 3444443 5
Q ss_pred CeEEEEecCCCceeEEeccCccCC-CCCcCC-------CCCcceeEEEeeecCCCCCceEEEEEecCC------------
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGG-SPNFSS-------KGRGMCMAVQAYLPSKSQGFVNVLAGYEDG------------ 231 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg------------ 231 (374)
++|++||+.+++............ ..+... ..... . ..+.|+ +. .|+.++.|.
T Consensus 130 ~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~--~-~~wSPD---G~-~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 130 NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY--A-LWWSPN---GK-FLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC--C-EEECTT---SS-EEEEEEEECTTSCEEEEEECC
T ss_pred CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc--c-EEECCC---CC-EEEEEEECCCCCceEEeeccC
Confidence 799999999887543221110000 000000 00000 0 123332 22 455554431
Q ss_pred ----------------------cEEEEeccCCCC----ce---eeeecCccCeEEEEEecCCCceEEEec--C--CeEEE
Q 017296 232 ----------------------SILVWDIRNPGI----PL---TAMKVHLEPVLCLSIDESCNGGISGGA--D--QKIVL 278 (374)
Q Consensus 232 ----------------------~i~iwdl~~~~~----~~---~~~~~h~~~v~~~~~~~~~~~~~s~s~--D--~~i~l 278 (374)
.|++||+..... .+ ..+.+|...+..++|+|++..+++... + ..|.+
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 788999875321 01 123457888999999999765555332 2 24777
Q ss_pred EE----cCCCCCeEEEEEeeecCCCCeE-----EEEECCCCCEEE--EEeCCC--eEEEEEccCCeEEEEecccCCceEE
Q 017296 279 YN----LDHSTGSCVIKKEINLERPGIS-----GTSIRPDSKIAA--TAGWDR--RVRIYNYRKGSALAILKYHHATCNA 345 (374)
Q Consensus 279 wd----~~~~~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~l~--s~~~dg--~v~iwd~~~~~~~~~~~~h~~~v~~ 345 (374)
|| ++..............+...+. .+.|+|||+.++ +...+| .|.+||+.+++ ...+..+...+..
T Consensus 283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~ 361 (719)
T 1z68_A 283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAIN 361 (719)
T ss_dssp EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEE
T ss_pred EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEE
Confidence 88 5432211111000022333444 789999999654 454566 46666776655 4456666667888
Q ss_pred EEEeCCCCEEEEEeCC-----CcEEEecCC
Q 017296 346 VSFSSDCKLMASASED-----STVALWELY 370 (374)
Q Consensus 346 v~~sp~~~~las~s~D-----~~v~~W~~~ 370 (374)
+.++ +++.|+..+.+ +.+++|.+.
T Consensus 362 ~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 362 IFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 8888 88877666554 889999864
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-16 Score=148.68 Aligned_cols=136 Identities=17% Similarity=0.138 Sum_probs=104.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC----CeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D----~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
+++...++.+.+||+... . ...+..+.. ..+.|+|++..+++++.| +.|.+||++..... .+..+..
T Consensus 125 ~~~s~~~~~~~l~d~~~g-~-~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~ 195 (582)
T 3o4h_A 125 VFTGATEDRVALYALDGG-G-LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEG 195 (582)
T ss_dssp EEEEECSSCEEEEEEETT-E-EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSC
T ss_pred EEEecCCCCceEEEccCC-c-EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCC
Confidence 344444445559999753 3 223333333 788999999999988877 78999998755422 2334555
Q ss_pred CeEEEEECCCCCEEEEEeCCC--eEEEEEccCCeEEEEecccCCceEEEE--------EeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDR--RVRIYNYRKGSALAILKYHHATCNAVS--------FSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~h~~~v~~v~--------~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+...+|||||++|+++..++ .|++||+.+++.. .+.+|...+..++ |+|||+++++++.|+++++|++
T Consensus 196 ~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 196 SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 688999999999999888898 8999999988877 7778887777777 9999999999999999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-14 Score=128.41 Aligned_cols=279 Identities=11% Similarity=0.126 Sum_probs=164.8
Q ss_pred CCCEEEEe------cCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc----------ccCeEEEEe
Q 017296 29 TKPILFAG------TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD 92 (374)
Q Consensus 29 ~~~~l~s~------s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~~vrvwd 92 (374)
++++++.. ..|+.|.+||..+++.+..+..+.. . .+++++ ++++++.+. .|++|.+||
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~--p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN--G--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE--E--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC--C--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEE
Confidence 45555543 3478999999998887766554322 1 556776 667777664 478899999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC-C
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-L 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d 171 (374)
+.+++... .+... ..... .+ ..+... .+ .++++++.++... +
T Consensus 88 ~~t~~~~~----~i~~~----------~~~~~----~g-------~~p~~i-----------~~-spdg~~l~v~n~~~~ 130 (361)
T 2oiz_A 88 ADKLTFEK----EISLP----------PKRVQ----GL-------NYDGLF-----------RQ-TTDGKFIVLQNASPA 130 (361)
T ss_dssp TTTCCEEE----EEEEC----------TTBCC----BC-------CCGGGE-----------EE-CTTSSEEEEEEESSS
T ss_pred CcCCcEEE----EEEcC----------ccccc----cC-------CCcceE-----------EE-CCCCCEEEEECCCCC
Confidence 98753210 11000 00000 00 000000 01 1233455555433 6
Q ss_pred CeEEEEecCCCceeEE-eccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee----
Q 017296 172 SEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT---- 246 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~---- 246 (374)
++|.+||+++++.+.. +.... +..+ .+.+. +...+++.+.||.+.+|++...+....
T Consensus 131 ~~v~v~d~~~~~~~~~~i~~~~--------------~~~v-~~~p~---~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~ 192 (361)
T 2oiz_A 131 TSIGIVDVAKGDYVEDVTAAAG--------------CWSV-IPQPN---RPRSFMTICGDGGLLTINLGEDGKVASQSRS 192 (361)
T ss_dssp EEEEEEETTTTEEEEEEGGGTT--------------EEEE-EECTT---SSSEEEEEETTSSEEEEEECTTSSEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEecCCC--------------ccee-EEcCC---CCeeEEEECCCCcEEEEEECCCCcEeeeccc
Confidence 7999999999987766 53210 0001 12222 222467788999999999865333221
Q ss_pred --eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec----C----CCCeEEEEECCCCCEEEEE
Q 017296 247 --AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----E----RPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 247 --~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~----~----~~~v~~~~~sp~~~~l~s~ 316 (374)
.+..+..++ .+.+.+++..++..+.++.+.++|+...+........... . ..+...++|+|+++.+..+
T Consensus 193 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 193 KQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp CCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred cceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 111122222 1222344455666778899999998644322211111000 0 0112237899998877655
Q ss_pred eC-----------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 317 GW-----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 317 ~~-----------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.. .++|.+||+.+++.+.++..+. +.+++|+|||++|++++. ++|.+||....
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred EccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 43 3589999999999999998777 999999999999998886 99999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-13 Score=119.99 Aligned_cols=139 Identities=17% Similarity=0.268 Sum_probs=98.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee--cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC--CC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE--RP 299 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~--~~ 299 (374)
+++.+.++.|.+||.. +..+..+. .+...+..+++++++..+++.+.++.|++||.+.. .. ..+..+ ..
T Consensus 135 ~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~---~~--~~~~~~g~~~ 207 (286)
T 1q7f_A 135 IVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ---YL--RQIGGEGITN 207 (286)
T ss_dssp EEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC---EE--EEESCTTTSC
T ss_pred EEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC---EE--EEEccCCccC
Confidence 4444556677777753 22233332 34456788999998886677778999999997532 22 122212 24
Q ss_pred CeEEEEECCCCCEEEEEeCCC-eEEEEEccCCeEEEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 300 GISGTSIRPDSKIAATAGWDR-RVRIYNYRKGSALAILKYHH--ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
....++++|+++++++...++ .|.+||. +++.+..+..+. ..+.+++++|+|+++++ +.|++|++|++..
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 578999999999988888786 9999995 577777666554 34789999999998887 6799999999854
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-12 Score=118.10 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=86.9
Q ss_pred cCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE-------eCCCeEEE
Q 017296 253 EPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA-------GWDRRVRI 324 (374)
Q Consensus 253 ~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-------~~dg~v~i 324 (374)
.....++++++ +..+++...++.|++||.+. +..........+...+..++|+| +..+++. ..+.+|++
T Consensus 196 ~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~--G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 196 SVPHSLALVPHLDQLCVADRENGRIQCFKTDT--KEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTT--CCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEE
T ss_pred CCCcEEEEECCCCEEEEEECCCCEEEEEECCC--CcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEE
Confidence 45778999987 66667778899999999863 33332222223345688999999 4333333 34559999
Q ss_pred EEccCCeEEEEe---cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 325 YNYRKGSALAIL---KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 325 wd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
||..+++.+..+ .++...+..|+++|+|.++++.+.++.|++|++.
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 999999988887 3677789999999999999999999999999874
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-14 Score=127.56 Aligned_cols=310 Identities=14% Similarity=0.022 Sum_probs=167.9
Q ss_pred CCCCCeEEeecCCCc-----eeEEEEeCCCCEEEEecC-C--CcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccc
Q 017296 6 PPPDPVAVLRGHRAS-----VTDVCFHQTKPILFAGTT-G--GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN 77 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~-----V~~l~~~~~~~~l~s~s~-D--~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (374)
...+.+..|..+... +..++|+|+|++|+.... + ..+.+||+.+++.......+. .....+.+++ +++
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp--dg~ 93 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST--DER 93 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT--TSS
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC--CCC
Confidence 344556667666544 788999999998765543 2 468888988776433221111 1111244555 678
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
+|+..+.++.|.+||+.+++.. .+........ +......+......... ... ...+.
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~~-------~~g~~l~~~~~~~~~~~-----~~~------~~~~s 150 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQ-----VIYTVDEEWK-------GYGTWVANSDCTKLVGI-----EIL------KRDWQ 150 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEE-----EEEECCTTEE-------EEEEEEECTTSSEEEEE-----EEE------GGGCC
T ss_pred EEEEEEcCCcEEEEECCCCCcE-----EEEecccccC-------CCCCEEEeccCCccccc-----ccc------ccccC
Confidence 8988888889999999876421 1110000000 00000000000000000 000 00111
Q ss_pred CCCCceEEEcc----cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC---
Q 017296 158 AEGPKYMAVAG----EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED--- 230 (374)
Q Consensus 158 ~~~~~~~~~~~----~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d--- 230 (374)
+++ +.+++.. ..+..|.+||+.+++......... . .....+.+. .+ ..++..+.+
T Consensus 151 pdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~-----------~---~~~~~~sp~--dg-~~l~~~~~~~~~ 212 (396)
T 3c5m_A 151 PLT-SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTA-----------W---LGHPIYRPF--DD-STVGFCHEGPHD 212 (396)
T ss_dssp CCC-SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESS-----------C---EEEEEEETT--EE-EEEEEEECSCSS
T ss_pred CCC-cceeeeeeccCCCcceEEEEECCCCcEEeeccCCc-----------c---cccceECCC--CC-CEEEEEecCCCC
Confidence 222 2222222 345689999999887533322110 0 011123321 12 234433333
Q ss_pred ---CcEEEEeccCCCCceeeeecC--ccCeEEEEEecCCCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 231 ---GSILVWDIRNPGIPLTAMKVH--LEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 231 ---g~i~iwdl~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
..|.+||+... . ...+..+ ...+..+.|+|++..++..+.+ +.|.+||++....... ... ..
T Consensus 213 ~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~----~~ 284 (396)
T 3c5m_A 213 LVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV--MVM----PP 284 (396)
T ss_dssp SCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE--EEC----CS
T ss_pred CCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe--eeC----CC
Confidence 46888887542 2 2223223 2357788999999887776554 4599999865432211 111 12
Q ss_pred eEEEEECC-CCCEEEEEe----------------CCCeEEEEEccCCeEEEEecccCC-----------ceEEEEEeCCC
Q 017296 301 ISGTSIRP-DSKIAATAG----------------WDRRVRIYNYRKGSALAILKYHHA-----------TCNAVSFSSDC 352 (374)
Q Consensus 301 v~~~~~sp-~~~~l~s~~----------------~dg~v~iwd~~~~~~~~~~~~h~~-----------~v~~v~~sp~~ 352 (374)
.. ..|+| |+++++.++ .+..|.+||+.+++. ..+..|.. .+..++|+|||
T Consensus 285 ~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg 362 (396)
T 3c5m_A 285 CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPND 362 (396)
T ss_dssp EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTS
T ss_pred CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCC
Confidence 33 88999 999888765 347899999987764 34544544 25668999999
Q ss_pred CEEEEEe-CCCcEEEecCC
Q 017296 353 KLMASAS-EDSTVALWELY 370 (374)
Q Consensus 353 ~~las~s-~D~~v~~W~~~ 370 (374)
+.|+.++ .++...||.+.
T Consensus 363 ~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 363 DGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp SEEEEEECTTSSCEEEEEE
T ss_pred CeEEEEecCCCCceEEEEE
Confidence 9887765 46777777653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-12 Score=119.56 Aligned_cols=277 Identities=10% Similarity=0.039 Sum_probs=162.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEec----------CCCcEEEEeCcccceeeeeeeeec----eeeeEEeccCCcc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSI 74 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 74 (374)
+.+.++..+..+ .++|+|+|++|+++. .+++|.+||..+++.+..+..+.. ......+++++
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-- 117 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-- 117 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT--
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC--
Confidence 455667667666 899999999999886 367899999988877666543210 01122345555
Q ss_pred ccceeeeccc--cCeEEEEecCCCCCCCCCceeeee-cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCC
Q 017296 75 GLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKT-NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (374)
Q Consensus 75 ~~~~l~s~~~--D~~vrvwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (374)
++++|+++.. +++|.+||+.+++.. .. .....+ .. +
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~-------~~~i~~~~~---------------------~~------v------- 156 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYV-------EDVTAAAGC---------------------WS------V------- 156 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEE-------EEEGGGTTE---------------------EE------E-------
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEE-------EEEecCCCc---------------------ce------e-------
Confidence 6778877653 689999999876321 00 000000 00 0
Q ss_pred CCCCCCCCCCceEEEcccCCCeEEEEecCC-CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC
Q 017296 152 SKDDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (374)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 230 (374)
...+.++. ..++.+.|+.+.+|+++. ++......... .+........+ .+.+ .+. .++..+.+
T Consensus 157 ---~~~p~~~~-~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~-----~~~~~~~~~~~---~~~~---~g~-~~~~~~~~ 220 (361)
T 2oiz_A 157 ---IPQPNRPR-SFMTICGDGGLLTINLGEDGKVASQSRSKQ-----MFSVKDDPIFI---APAL---DKD-KAHFVSYY 220 (361)
T ss_dssp ---EECTTSSS-EEEEEETTSSEEEEEECTTSSEEEEEECCC-----CSCTTTSCBCS---CCEE---CSS-EEEEEBTT
T ss_pred ---EEcCCCCe-eEEEECCCCcEEEEEECCCCcEeeeccccc-----eEcCCCCceEE---Eecc---cCC-EEEEEeCC
Confidence 00011111 223445577888888865 44332211000 01110000000 0011 122 24445578
Q ss_pred CcEEEEeccCCCCce-eeeec------C----ccCeEEEEEecCCCceEEEec-----------CCeEEEEEcCCCCCeE
Q 017296 231 GSILVWDIRNPGIPL-TAMKV------H----LEPVLCLSIDESCNGGISGGA-----------DQKIVLYNLDHSTGSC 288 (374)
Q Consensus 231 g~i~iwdl~~~~~~~-~~~~~------h----~~~v~~~~~~~~~~~~~s~s~-----------D~~i~lwd~~~~~~~~ 288 (374)
+.|.++|+....... ..+.. + .....-+++++++..++.+.. .++|.+||++.. +.
T Consensus 221 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~ 298 (361)
T 2oiz_A 221 GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QR 298 (361)
T ss_dssp SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EE
T ss_pred CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cE
Confidence 899999986432111 11110 0 011122678888666655432 358999998643 32
Q ss_pred EEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC--eEEEEecccCCceEEEEEeCCCC
Q 017296 289 VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCK 353 (374)
Q Consensus 289 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~ 353 (374)
. ..+..+. ..+++|+||+++|++++. ++|.+||..++ +.++++..+......++++|+|+
T Consensus 299 v--~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 299 V--ARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp E--EEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred E--EEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 2 3344444 889999999999998887 99999999999 99988877778889999999986
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-12 Score=116.22 Aligned_cols=266 Identities=11% Similarity=0.051 Sum_probs=151.3
Q ss_pred CCeEEeecCC-CceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeec----eeeeEEeccCCccccceeeec
Q 017296 9 DPVAVLRGHR-ASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSA----AHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~gH~-~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~s~ 82 (374)
+.+..+..+. ..+..++|+|+|+++ ++++.++.|.+||+.+++.+..+..+.. ...+..+++++ ++++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~ 109 (349)
T 1jmx_B 32 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYAT 109 (349)
T ss_dssp EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEE
T ss_pred cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC--CCCEEEEE
Confidence 3445555443 257889999999865 5667789999999988876655432211 11244566766 66788888
Q ss_pred ccc------------CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 83 GRD------------GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 83 ~~D------------~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
+.+ ++|.+||+.+++.... +.. ...+.. ..+
T Consensus 110 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----~~~----------~~~~~~--------~~~--------------- 152 (349)
T 1jmx_B 110 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKP----VRT----------FPMPRQ--------VYL--------------- 152 (349)
T ss_dssp EEEEEECSSCEEECCCEEEEEEGGGGGGBCC----SEE----------EECCSS--------CCC---------------
T ss_pred cccccccccccccCCCeEEEEECCCccccce----eee----------ccCCCc--------ccc---------------
Confidence 765 8999999987532110 000 000000 000
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCc---------CCCCC-cceeEE--EeeecCCC
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNF---------SSKGR-GMCMAV--QAYLPSKS 218 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~--~~~~~~~~ 218 (374)
..+.++++ + ++++ +.|.+||+++++....+...... ...+ ..... ...... ..+.++..
T Consensus 153 ---~~~s~dg~-l-~~~~---~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 153 ---MRAADDGS-L-YVAG---PDIYKMDVKTGKYTVALPLRNWN-RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp ---EEECTTSC-E-EEES---SSEEEECTTTCCEEEEECSTTCC-CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ---eeECCCCc-E-EEcc---CcEEEEeCCCCceeccccccccC-CccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 00123333 3 3332 24999999999876665432100 0000 00000 000000 00110000
Q ss_pred -------CCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEE
Q 017296 219 -------QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVI 290 (374)
Q Consensus 219 -------~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~ 290 (374)
.....+.....++.+++|++. .+...+..+.+++ ++..++++ ++.|.+||++.. +..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--~~~- 288 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFA----------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--KLI- 288 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEE----------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT--EEE-
T ss_pred CCccccccceeEEEEeccCCcEEecccc----------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC--eEE-
Confidence 000011123334555555542 2455678899999 98887777 899999998653 222
Q ss_pred EEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 291 KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 291 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
..+.. ...+.+++|+|++++|++++.++.|++||..+++.+..++.+
T Consensus 289 -~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 289 -KAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -EEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -EEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 12222 234678999999998888888999999999999988877644
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=144.58 Aligned_cols=284 Identities=10% Similarity=0.081 Sum_probs=146.1
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeece-eeeE--EeccCCccccceeeeccccC-------
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA-HGIV--SVATGPSIGLNKVISQGRDG------- 86 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~s~~~D~------- 86 (374)
+......++|+|+|.+|+++ |++|++||..++++...+.+|... ..+. .+.+++ |+++++.++.++
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEEEECSSSCE
T ss_pred ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECCeeeEEEcc
Confidence 34456788999999999986 899999999998876555554321 1111 145565 778888888764
Q ss_pred --eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 87 --TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 87 --~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
.+.+||+.+++.... . .... .. . .+ .+.++++ .+
T Consensus 91 ~~~~~~~d~~~~~~~~l---~--~~~~-----------~~-------------~----~~----------~~SPdG~-~l 126 (740)
T 4a5s_A 91 TASYDIYDLNKRQLITE---E--RIPN-----------NT-------------Q----WV----------TWSPVGH-KL 126 (740)
T ss_dssp EEEEEEEETTTTEECCS---S--CCCT-----------TE-------------E----EE----------EECSSTT-CE
T ss_pred ceEEEEEECCCCcEEEc---c--cCCC-----------cc-------------e----ee----------EECCCCC-EE
Confidence 455999988742110 0 0000 00 0 00 1223333 34
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCC-------CCceEEEEEecCCc-EEEE
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS-------QGFVNVLAGYEDGS-ILVW 236 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~gs~dg~-i~iw 236 (374)
+.+ .++.|.+||+.+++.. .+... +.... .+..... .+...-+.=|-||. |...
T Consensus 127 a~~--~~~~i~~~~~~~~~~~-~lt~~-----------g~~~~----~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 127 AYV--WNNDIYVKIEPNLPSY-RITWT-----------GKEDI----IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp EEE--ETTEEEEESSTTSCCE-ECCSC-----------CBTTT----EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred EEE--ECCeEEEEECCCCceE-EEcCC-----------CCccc----eecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 443 3699999998887632 22110 00000 0000000 00000122344554 3333
Q ss_pred eccCCCCceeeeec------CccCeEEEEEecCCCceEEEecCCeEEEEEcCC---CCC-eEEEEEe---eecCCCCeEE
Q 017296 237 DIRNPGIPLTAMKV------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDH---STG-SCVIKKE---INLERPGISG 303 (374)
Q Consensus 237 dl~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~---~~~-~~~~~~~---~~~~~~~v~~ 303 (374)
...........+.. +...+..+.+...+.. ..+.+|.+||++. .+. ....... ...+...+..
T Consensus 189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 264 (740)
T 4a5s_A 189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (740)
T ss_dssp EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEE
Confidence 22221111111110 1122333333222210 1223688899875 421 1111100 0024456889
Q ss_pred EEECCCCCEEEEEeC----CCeEEEEEccCCe----EE--EEe--cccCCceE-----EEEEeCCCCEEE-EEe-CCC--
Q 017296 304 TSIRPDSKIAATAGW----DRRVRIYNYRKGS----AL--AIL--KYHHATCN-----AVSFSSDCKLMA-SAS-EDS-- 362 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~----dg~v~iwd~~~~~----~~--~~~--~~h~~~v~-----~v~~sp~~~~la-s~s-~D~-- 362 (374)
++||||++.++.... +..|++||+.+++ +. .++ ..|...|. ..+|+|||+.|+ ..| .||
T Consensus 265 ~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~ 344 (740)
T 4a5s_A 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR 344 (740)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred EEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCce
Confidence 999999997665432 3479999998887 22 122 45665554 789999999877 665 444
Q ss_pred cEEEecCC
Q 017296 363 TVALWELY 370 (374)
Q Consensus 363 ~v~~W~~~ 370 (374)
.|++|++.
T Consensus 345 ~l~~~~~~ 352 (740)
T 4a5s_A 345 HICYFQID 352 (740)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 46666654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=126.75 Aligned_cols=290 Identities=12% Similarity=0.034 Sum_probs=162.2
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEe--cCCCcEEEEeCcccceeeeeeeeeceeeeE---------EeccCCccccce-e
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAG--TTGGELRIWDTVQHRTVSSSWVHSAAHGIV---------SVATGPSIGLNK-V 79 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~--s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-l 79 (374)
..+.+|...|..++|++++-++++. +.++...||....+.....+..|.. .+. .+.++.++|+++ +
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPW--NVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTC--CBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCc--cccccccccCCccceeeeecCCCeEE
Confidence 4578999999999999887777777 7789999999543333333333321 122 333442236666 5
Q ss_pred eecc-ccCeEEEEecC--C-CCCCCCCceeeee-----cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 80 ISQG-RDGTVKCWDIE--N-GGLSSNPSLTIKT-----NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 80 ~s~~-~D~~vrvwd~~--~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
+..+ .+..|.+|++. . +... .+.. ........
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~-----~l~~~~~~~~~~~~~~~---------------------------------- 135 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPR-----PLTPVSAVGGGLRWADP---------------------------------- 135 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCE-----ECSCCCCSTTCEEEEEE----------------------------------
T ss_pred EEEECCCCeEEEEcCCCCCCCCCE-----eccCCccCCCCccccCc----------------------------------
Confidence 5433 35566666654 2 3210 0000 00000000
Q ss_pred CCCCCCCCCCCceEEEcccC---------CCeEEEEecCC------CceeEEec-cCccCCCCCcCCCCCcceeEEEeee
Q 017296 151 DSKDDVPAEGPKYMAVAGEQ---------LSEVEIWDLNT------AERCTRLH-QNSCGGSPNFSSKGRGMCMAVQAYL 214 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~---------d~~i~vWd~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (374)
.+.+++ +.++++... ..+|.+||+.+ ++. ..+. ... ..... ..+.
T Consensus 136 ----~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~------------~~~~~-~~~S 196 (662)
T 3azo_A 136 ----VLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAH------------RFVTG-PRLS 196 (662)
T ss_dssp ----EEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCS------------SEECC-CEEC
T ss_pred ----EECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCC------------CcccC-ceEC
Confidence 011233 333333321 14799999988 543 2222 110 00000 1133
Q ss_pred cCCCCCceEEEEEecC--------CcEEEEeccCCC---CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC
Q 017296 215 PSKSQGFVNVLAGYED--------GSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (374)
Q Consensus 215 ~~~~~~~~~~~~gs~d--------g~i~iwdl~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~ 283 (374)
+ ++. .|+.++.+ ..|.+||+...+ .......+|...+..+.|+|++..+++++.|+..+||.++.
T Consensus 197 p---DG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 197 P---DGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp T---TSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred C---CCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 3 232 45555543 479999997323 33333445578899999999998667777888555554443
Q ss_pred CCCeEEEEEeeecCC--------CCeEEEEECCCCCEEEEEeCCCeEEEE--EccCCeEEEEecccCCceEEE-EEeCCC
Q 017296 284 STGSCVIKKEINLER--------PGISGTSIRPDSKIAATAGWDRRVRIY--NYRKGSALAILKYHHATCNAV-SFSSDC 352 (374)
Q Consensus 284 ~~~~~~~~~~~~~~~--------~~v~~~~~sp~~~~l~s~~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~v-~~sp~~ 352 (374)
.++..... ...+. ..+..++|+|++++++++.. ++++|| |+..++ +..+..|...+..+ ++.++.
T Consensus 273 ~~~~~~~l--~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~ 348 (662)
T 3azo_A 273 ATGAATQL--CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTR 348 (662)
T ss_dssp TTCCEEES--SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTE
T ss_pred CCCceeec--ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCE
Confidence 23322211 11111 11567899999999999998 999999 554454 67788888778776 444333
Q ss_pred CEEEEEeCCCcEEEecC
Q 017296 353 KLMASASEDSTVALWEL 369 (374)
Q Consensus 353 ~~las~s~D~~v~~W~~ 369 (374)
-++++++.+...++|.+
T Consensus 349 ~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 349 AVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEEEEEETTEEEEEEEE
T ss_pred EEEEEcCCCCCCEEEEE
Confidence 35556677766666644
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-13 Score=130.81 Aligned_cols=314 Identities=11% Similarity=-0.001 Sum_probs=166.6
Q ss_pred CCeEEeecCCC---ceeEEEEeCCCCEEEEecC---------CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccc
Q 017296 9 DPVAVLRGHRA---SVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76 (374)
Q Consensus 9 ~~~~~l~gH~~---~V~~l~~~~~~~~l~s~s~---------D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (374)
++...+.+|.. .|.+++|||||++|++++. |++|++||+.+++.+...... ..+..++|+| |+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SP--DG 121 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSP--VG 121 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECS--ST
T ss_pred cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cccccceECC--CC
Confidence 44555556654 4999999999999998876 789999999888763111111 2356677887 67
Q ss_pred ceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCC
Q 017296 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (374)
Q Consensus 77 ~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (374)
++|+.+. |+.|++||+.+++... +. ...+...+ . .+.....+..+.... .....+
T Consensus 122 ~~la~~~-~~~i~~~~~~~g~~~~-----l~-~~~~~~~v--~---------~g~~~~v~~ee~~~~-------~~~~~w 176 (719)
T 1z68_A 122 SKLAYVY-QNNIYLKQRPGDPPFQ-----IT-FNGRENKI--F---------NGIPDWVYEEEMLAT-------KYALWW 176 (719)
T ss_dssp TCEEEEE-TTEEEEESSTTSCCEE-----CC-CCCBTTTE--E---------ESSCCHHHHHHTTCS-------SCCEEE
T ss_pred CEEEEEE-CCeEEEEeCCCCCcEE-----Ee-cCCCcCCe--E---------cccccceeeeecccC-------cccEEE
Confidence 8888774 7899999998874311 00 00000000 0 000000000000000 000001
Q ss_pred CCCCCceEEEcccC---------------------------------CCeEEEEecCCCcee--EEeccCccCCCCCcCC
Q 017296 157 PAEGPKYMAVAGEQ---------------------------------LSEVEIWDLNTAERC--TRLHQNSCGGSPNFSS 201 (374)
Q Consensus 157 ~~~~~~~~~~~~~~---------------------------------d~~i~vWd~~~~~~~--~~~~~~~~~~~~~~~~ 201 (374)
.+ +++++++++.. ..+|++||+.+++.. ..+.... .+..
T Consensus 177 SP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~~ 250 (719)
T 1z68_A 177 SP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-----MIAS 250 (719)
T ss_dssp CT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-----HHHT
T ss_pred CC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-----cCCC
Confidence 12 22333332221 127889999887642 1221100 0000
Q ss_pred CCCcceeEEEeeecCCCCCceEEEEEecC----CcEEEEe----ccCCCCceeee----ecCccCeE-----EEEEecCC
Q 017296 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYED----GSILVWD----IRNPGIPLTAM----KVHLEPVL-----CLSIDESC 264 (374)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~d----g~i~iwd----l~~~~~~~~~~----~~h~~~v~-----~~~~~~~~ 264 (374)
.... .....+.++ + ..+++.... ..|.+|| +.+ +.....+ .+|...+. .+.|+|++
T Consensus 251 -~~~~-~~~~~~SpD---~-~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 251 -SDYY-FSWLTWVTD---E-RVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp -SCEE-EEEEEESSS---S-EEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred -Ccce-EEEeEEeCC---C-eEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccCCceEccccCCccEECCCC
Confidence 0011 111234443 2 234443332 2488889 643 2222333 35666666 78899988
Q ss_pred CceEE--EecCC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEEccC--Ce-E
Q 017296 265 NGGIS--GGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----RRVRIYNYRK--GS-A 332 (374)
Q Consensus 265 ~~~~s--~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----g~v~iwd~~~--~~-~ 332 (374)
..++. ...++ .|.+||++... . ..+..+...+..+.++ +++.|+..+.+ +++++|.+.. +. .
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~--~---~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~ 397 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVEN--A---IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS 397 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTT--C---EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC
T ss_pred CeEEEEEEccCCceEEEEEECCCCc--e---EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC
Confidence 86543 44555 56666664432 1 1222333456777777 77776655554 8899998754 32 1
Q ss_pred EEEec----ccCCceEEEEEeCCCCEEEE-EeCC--CcEEEecCCC
Q 017296 333 LAILK----YHHATCNAVSFSSDCKLMAS-ASED--STVALWELYP 371 (374)
Q Consensus 333 ~~~~~----~h~~~v~~v~~sp~~~~las-~s~D--~~v~~W~~~~ 371 (374)
...+. +|...+..+.|+||+++++. ++.+ ..+.+|++..
T Consensus 398 ~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 398 KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence 23333 26667889999999997664 4443 4677887744
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-11 Score=108.42 Aligned_cols=262 Identities=12% Similarity=0.083 Sum_probs=155.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
..+..+..+.....+++|+++|+ +++++..++.|.+||..++ +..+..+. .....+++++ +++.+++...++.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~l~~~~--dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--HHQNGHCLNK--QGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--SSEEEEEECT--TCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--CCcceeeECC--CCcEEEEecCCCe
Confidence 45567777888889999999998 8889999999999998776 33333222 3356677766 5667777777789
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|.+||..+|+.. .+ ... ... . ... .+ ..+++
T Consensus 92 i~~~d~~~g~~~-----~~-~~~--------~~~-~----~~~--------~~---------------------~~i~~- 122 (296)
T 3e5z_A 92 LERQREPGGEWE-----SI-ADS--------FEG-K----KLN--------SP---------------------NDVCL- 122 (296)
T ss_dssp EEEECSTTCCEE-----EE-ECE--------ETT-E----ECC--------CC---------------------CCEEE-
T ss_pred EEEEcCCCCcEE-----EE-eec--------cCC-C----CCC--------CC---------------------CCEEE-
Confidence 999999776421 00 000 000 0 000 00 00010
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
..++.+-+=|...+.. . ... ... . ......+.|..+|.. + .+..
T Consensus 123 -d~~G~l~vtd~~~g~~-~-~~~-------~~~-------------------~----~~~~~~~~l~~~~~~--g-~~~~ 166 (296)
T 3e5z_A 123 -APDGSLWFSDPTYGID-K-PEE-------GYG-------------------G----EMELPGRWVFRLAPD--G-TLSA 166 (296)
T ss_dssp -CTTSCEEEEECSHHHH-C-GGG-------SSC-------------------C----CCCSSSCEEEEECTT--S-CEEE
T ss_pred -CCCCCEEEECCccccc-c-ccc-------ccc-------------------c----cccCCCcEEEEECCC--C-CEEE
Confidence 0112111100000000 0 000 000 0 000012234444432 2 2333
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE-EEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC-VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
+..+......+++++++..+++.+.++.|.+|+++. ++.. .....+..+......++++++|++.++. ++.|.+||
T Consensus 167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 445566678899999998887788889999999862 2332 1111122233446689999999977766 88999999
Q ss_pred ccCCeEEEEecccCCceEEEEE-eCCCCEEEEEeCCCcEEE
Q 017296 327 YRKGSALAILKYHHATCNAVSF-SSDCKLMASASEDSTVAL 366 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~-sp~~~~las~s~D~~v~~ 366 (374)
.. ++.+..+..+.. +.+++| .|+++.|+.++.++..++
T Consensus 244 ~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 244 PD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp TT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred CC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 85 788888877777 999999 589998888888765443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-11 Score=111.32 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=97.5
Q ss_pred cCCcEEEEeccCCCCceeeee----cCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeec--CCCCe
Q 017296 229 EDGSILVWDIRNPGIPLTAMK----VHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINL--ERPGI 301 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~--~~~~v 301 (374)
.+|++.+|++...+.....+. .+...+..+.|+|++..++++. .++.|++|+++. ++.......... +....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCC
Confidence 689999999974333222232 2456789999999998777665 478999999973 333332223332 24568
Q ss_pred EEEEECCCCCEEEEEeC-CCeEEEEEcc--CCeEE---EEe---cc----cCC------ceEEEE-EeCCCCEEEEEeCC
Q 017296 302 SGTSIRPDSKIAATAGW-DRRVRIYNYR--KGSAL---AIL---KY----HHA------TCNAVS-FSSDCKLMASASED 361 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~-dg~v~iwd~~--~~~~~---~~~---~~----h~~------~v~~v~-~sp~~~~las~s~D 361 (374)
..++|+||++++++++. +++|.+|++. +++.. ..+ .. |.. .+..++ |+|||++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 89999999999887775 7899999875 45532 122 21 222 588999 99999988766543
Q ss_pred C------cEEEecCC
Q 017296 362 S------TVALWELY 370 (374)
Q Consensus 362 ~------~v~~W~~~ 370 (374)
. +|++|++.
T Consensus 276 ~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 276 NKFELQGYIAGFKLR 290 (365)
T ss_dssp SSTTSCCEEEEEEEC
T ss_pred CCCCCCCeEEEEEEC
Confidence 2 89999985
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-11 Score=120.02 Aligned_cols=139 Identities=6% Similarity=-0.025 Sum_probs=93.1
Q ss_pred CCcEEEEeccC------CCCceeeeecCccCeEEEEEecCCCceEEEecC----CeEEEEEcCCCCC-eEEEEEeeecCC
Q 017296 230 DGSILVWDIRN------PGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTG-SCVIKKEINLER 298 (374)
Q Consensus 230 dg~i~iwdl~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D----~~i~lwd~~~~~~-~~~~~~~~~~~~ 298 (374)
+..|.+||+.. +......+..+...+.. .+++++..++..+.+ ..|.+||++.... ... .+..+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~ 333 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK---VLVPEH 333 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE---EEECCC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce---eccCCC
Confidence 56888999864 32234556666666554 366666666655543 3699999865421 111 111222
Q ss_pred --CCeEEEEECCCCCEEEEEeCCCe--EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEE-EE---eCCCcEEEecCC
Q 017296 299 --PGISGTSIRPDSKIAATAGWDRR--VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA-SA---SEDSTVALWELY 370 (374)
Q Consensus 299 --~~v~~~~~sp~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~---s~D~~v~~W~~~ 370 (374)
..+..++|++++.+++++..|+. |.+||+.+++.+..+..+.+.+..++++|+++.|+ +. ...++|.+||+.
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 25778899988888999999985 55567767887778888888899999999997655 32 345789999885
Q ss_pred CC
Q 017296 371 PP 372 (374)
Q Consensus 371 ~~ 372 (374)
.+
T Consensus 414 tg 415 (710)
T 2xdw_A 414 KE 415 (710)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-09 Score=96.96 Aligned_cols=245 Identities=9% Similarity=0.075 Sum_probs=141.9
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc---
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--- 85 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--- 85 (374)
++...+.+|...+.+++|+++|++++++..++.|.+||..+++.......+ ...+..+++++ +++.+++...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~i~~~~--dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH--KANPAAIKIHK--DGRLFVCYLGDFKS 110 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS--SSSEEEEEECT--TSCEEEEECTTSSS
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC--CCCcceEEECC--CCcEEEEeCCCCCC
Confidence 345667788888899999999998889999999999998877643322111 23466677765 45666666555
Q ss_pred -CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 86 -GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 86 -~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
+.|.+||..++... .+ ..... .. ....
T Consensus 111 ~~~i~~~d~~~~~~~-----~~------------~~~~~----------------~~-------------------~~~~ 138 (333)
T 2dg1_A 111 TGGIFAATENGDNLQ-----DI------------IEDLS----------------TA-------------------YCID 138 (333)
T ss_dssp CCEEEEECTTSCSCE-----EE------------ECSSS----------------SC-------------------CCEE
T ss_pred CceEEEEeCCCCEEE-----EE------------EccCc----------------cC-------------------Cccc
Confidence 67888887665310 00 00000 00 0000
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec------CCcEEEEec
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE------DGSILVWDI 238 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~------dg~i~iwdl 238 (374)
.++-..++. .+++... .+.|..||.
T Consensus 139 ~i~~d~~g~-------------------------------------------------l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 139 DMVFDSKGG-------------------------------------------------FYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp EEEECTTSC-------------------------------------------------EEEEECCCBTTBCCEEEEEECT
T ss_pred ceEECCCCC-------------------------------------------------EEEEeccccccCCCceEEEEeC
Confidence 000000010 0111111 123333333
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeE-EEEEe--eecC-CCCeEEEEECCCCCEE
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSC-VIKKE--INLE-RPGISGTSIRPDSKIA 313 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~-~~~~~--~~~~-~~~v~~~~~sp~~~~l 313 (374)
.. .....+..+...+..+.+++++..+ ++.+.++.|.+||++...... .+... .... ......+++++++++.
T Consensus 170 ~~--~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~ 247 (333)
T 2dg1_A 170 DF--RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 247 (333)
T ss_dssp TS--CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred CC--CEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence 21 1122222233456788999988755 455668899999986321111 11111 1111 1357789999999988
Q ss_pred EEEeCCCeEEEEEccCCeEEEEecccCC------ceEEEEEeCCCCEEEEEeCC
Q 017296 314 ATAGWDRRVRIYNYRKGSALAILKYHHA------TCNAVSFSSDCKLMASASED 361 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~~~~~~~~~h~~------~v~~v~~sp~~~~las~s~D 361 (374)
++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 248 v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 248 VAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 88888899999998 5676666654433 68999999998766544433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-11 Score=120.27 Aligned_cols=122 Identities=7% Similarity=-0.075 Sum_probs=77.0
Q ss_pred eeeecCccCeEEEEEecCCCceEEEe----cCCeEEEEEcCCCCCe--EEEEEeeecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGG----ADQKIVLYNLDHSTGS--CVIKKEINLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s----~D~~i~lwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
..+..+...+....+ +++. ++..+ .++.|.+||++..... ..+.. ..+...+..++|+ +++++++...|
T Consensus 265 ~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~l~~~~~~-~~~lv~~~~~d 339 (695)
T 2bkl_A 265 RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--EDSSASLLSVSIV-GGHLSLEYLKD 339 (695)
T ss_dssp EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--CCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec--CCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 334444444444444 3344 43333 3578999998654310 11111 1113347778888 77889999999
Q ss_pred CeEEEEEcc-CCeEEEEeccc-CCceEEEEEeCCCCEEE----EEeCCCcEEEecCCCC
Q 017296 320 RRVRIYNYR-KGSALAILKYH-HATCNAVSFSSDCKLMA----SASEDSTVALWELYPP 372 (374)
Q Consensus 320 g~v~iwd~~-~~~~~~~~~~h-~~~v~~v~~sp~~~~la----s~s~D~~v~~W~~~~~ 372 (374)
+..+||.+. +++....+..+ ...+..++++|+++.|+ +...+++|++||+..+
T Consensus 340 g~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 340 ATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp TEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred CEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 999998765 46666666655 56788889999998766 3334678999998643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-10 Score=97.21 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=94.2
Q ss_pred EecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
...++.|..||..... ...........+..+++++++..+++...++.|.+||.+... .. ............+++
T Consensus 125 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~p~~i~~ 199 (270)
T 1rwi_B 125 DRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN--QV--VLPFTDITAPWGIAV 199 (270)
T ss_dssp EGGGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC--EE--ECCCSSCCSEEEEEE
T ss_pred ECCCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc--eE--eecccCCCCceEEEE
Confidence 3445566666543211 111111223456778888888766666678899999876432 11 111112245789999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 307 RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 307 sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|++.+.++...++.|.+||............+...+.++++.|+|+++++.+.++.|+++++..+
T Consensus 200 d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 200 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 999988887778899999998654433322234467899999999999999999999999998654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-10 Score=102.10 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=98.3
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC------C-cEEEEeccCCCCc
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED------G-SILVWDIRNPGIP 244 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d------g-~i~iwdl~~~~~~ 244 (374)
..|.+||+.+++.+..+... . ... ..+.++ + .++++..+ . ...+|.+. .+.
T Consensus 152 ~~l~~~d~~~~~~~~~l~~~-~-----------~~~---~~~spd---g--~~~~~~~~~~~~~~~~~~~l~~~d-~~~- 209 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEKP-R-----------FSS---GIWHRD---K--IVVNVPHREIIPQYFKFWDIYIWE-DGK- 209 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEE-T-----------TCE---EEEETT---E--EEEEEECCCSSCCSSCCEEEEEEE-TTE-
T ss_pred ceEEEEECCCCeEEeeecCC-C-----------ccc---ccCCCC---e--EEEEEecccccccccccccEEEeC-CCc-
Confidence 57999999988753333221 0 000 112222 2 35555443 2 45666555 332
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCC--------eEEEEEcCCCCCeEEEEEeeecCCCCeEE-EEECCCCCEEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQ--------KIVLYNLDHSTGSCVIKKEINLERPGISG-TSIRPDSKIAAT 315 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~--------~i~lwd~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s 315 (374)
...+..+ ..+..+ +|++..++..+.++ .|.+|| ++... .....+...+.. +.|+ |+ ++++
T Consensus 210 ~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d----~~~~~--~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 210 EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD----GKEVM--GILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC----SSCEE--ESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC----CCceE--eccccCCcccCCccEEc-Cc-EEEE
Confidence 3334444 455544 78888887776543 566666 22221 112223345665 8999 88 8899
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcE-EEecCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV-ALWELY 370 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v-~~W~~~ 370 (374)
++.++.++|| +.+++.. .+..+...|.+++|+| +++++++.++.. +||.+.
T Consensus 279 ~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999999 8866654 3444678899999999 777777777765 788653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-09 Score=101.83 Aligned_cols=286 Identities=15% Similarity=0.056 Sum_probs=170.6
Q ss_pred CCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC--CCCCCCCCcee
Q 017296 28 QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE--NGGLSSNPSLT 105 (374)
Q Consensus 28 ~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~--~~~~~~~~~~~ 105 (374)
+.+.++++...+++|.++|..+++.+..+...... ..+.+++ +++++++++.|+.|.+||+. +++.. ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p---~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t~~~v----~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV---HISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTV----AE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCE---EEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEE----EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCc---cceEECC--CCCEEEEEcCCCeEEEEECCCCCCcEe----EE
Confidence 44567888899999999999998877766543222 2456766 67888888999999999995 44211 11
Q ss_pred eeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC---CCCceEEEcccCCCeEEEEecCCC
Q 017296 106 IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA---EGPKYMAVAGEQLSEVEIWDLNTA 182 (374)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~vWd~~~~ 182 (374)
+..... +.. . .+++ +++++++++...++++.++|..+.
T Consensus 236 i~~G~~----------P~~------------------i-----------a~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 236 IKIGSE----------ARS------------------I-----------ETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp EECCSE----------EEE------------------E-----------EECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred EecCCC----------Cce------------------e-----------EEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 111100 000 0 0111 245677777777899999999998
Q ss_pred ceeEEeccCccC-CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe
Q 017296 183 ERCTRLHQNSCG-GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID 261 (374)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~ 261 (374)
+.+..+.-.... ....+.+..+ ...+ ...+ .+...++.-..+|.|.++|..........-.........+.|+
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~r--va~i-~~s~---~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~ 350 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPR--VAAI-LASH---YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 350 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCC--EEEE-EECS---SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred cEEEEEeccccccccccccCCCc--eEEE-EEcC---CCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceEC
Confidence 877665422110 0000000101 1111 1111 2233455567789999999865322111111233456678899
Q ss_pred cCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEee-e--cCC-CCeEEEEECCCCCE-EEEEe-CCCeEEEEEccC-----
Q 017296 262 ESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEI-N--LER-PGISGTSIRPDSKI-AATAG-WDRRVRIYNYRK----- 329 (374)
Q Consensus 262 ~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~-~--~~~-~~v~~~~~sp~~~~-l~s~~-~dg~v~iwd~~~----- 329 (374)
+++.+++.+. .++.|.++|++.. +....... . -|. .++. -++|++.. .+++. .+++|.++|..+
T Consensus 351 pdgr~~~va~~~sn~V~ViD~~t~--kl~~~i~vgg~~Phpg~g~~--~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 351 GSHRYFITAANARNKLVVIDTKEG--KLVAIEDTGGQTPHPGRGAN--FVHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTT--EEEEEEECSSSSBCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred CCCCEEEEEeCCCCeEEEEECCCC--cEEEEEeccCcCCCCcccee--eECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 9999886655 6789999998743 32221122 1 111 1222 26887544 44443 468999999987
Q ss_pred --CeEEEEecccCCceEEEEEeCCCCEEEEEeC-------CCcEEEecCCC
Q 017296 330 --GSALAILKYHHATCNAVSFSSDCKLMASASE-------DSTVALWELYP 371 (374)
Q Consensus 330 --~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-------D~~v~~W~~~~ 371 (374)
-+.++++......-..+..+||+++|..... ...|.++|+..
T Consensus 427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 4567777655444455788999997776542 35899998753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-08 Score=87.98 Aligned_cols=284 Identities=5% Similarity=-0.062 Sum_probs=163.2
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
.+..+...+.+|+++++|.+.++...++.|.+||.. ++. ..+...........+++++ +++..++...++.|..||
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRIT 84 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEEC
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECC--CCCEEEeCCCCCeEEEEC
Confidence 344566789999999999988887778999999987 543 2222111123355666665 456667766688899998
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
.. ++. .... . +.. . . .+.... + .+++. +.++...++
T Consensus 85 ~~-g~~-----~~~~-----------~--~~~----~---~-----~~~~i~-----------~-~~~g~-l~v~~~~~~ 120 (299)
T 2z2n_A 85 KK-GII-----KEYT-----------L--PNP----D---S-----APYGIT-----------E-GPNGD-IWFTEMNGN 120 (299)
T ss_dssp TT-SCE-----EEEE-----------C--SST----T---C-----CEEEEE-----------E-CTTSC-EEEEETTTT
T ss_pred CC-CcE-----EEEe-----------C--CCc----C---C-----CceeeE-----------E-CCCCC-EEEEecCCc
Confidence 75 321 0000 0 000 0 0 000000 0 11122 333444457
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
.|..||. +++........ .......++ + + ..+. ..++...++.|..||. +.......+....
T Consensus 121 ~i~~~d~-~g~~~~~~~~~---------~~~~~~~i~---~--~-~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~ 182 (299)
T 2z2n_A 121 RIGRITD-DGKIREYELPN---------KGSYPSFIT---L--G-SDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPA 182 (299)
T ss_dssp EEEEECT-TCCEEEEECSS---------TTCCEEEEE---E--C-TTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred eEEEECC-CCCEEEecCCC---------CCCCCceEE---E--c-CCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCC
Confidence 8999998 55432211100 000111111 1 1 1232 3444556789999998 3222111122344
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~ 332 (374)
..+..+.+++++...++...++.|..||. .. .... .........+.+++++|++++.++...++.|.+||. +++.
T Consensus 183 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g--~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 257 (299)
T 2z2n_A 183 SGPVGITKGNDDALWFVEIIGNKIGRITT-SG--EITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII 257 (299)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECT-TC--CEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE
T ss_pred CcceeEEECCCCCEEEEccCCceEEEECC-CC--cEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce
Confidence 56889999988875566666889999987 22 2221 112223356889999999997777667899999998 4553
Q ss_pred EE-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 333 LA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 333 ~~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.. .+..+...+.++++ ++|++.++.+.++.++ ++.
T Consensus 258 ~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~-~~~ 293 (299)
T 2z2n_A 258 EEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK-LTL 293 (299)
T ss_dssp EEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE-EEE
T ss_pred EEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE-EEc
Confidence 32 23345578999999 9999877766554444 443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=115.57 Aligned_cols=183 Identities=10% Similarity=0.079 Sum_probs=118.4
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC---------CcEEEEeccCC
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---------GSILVWDIRNP 241 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---------g~i~iwdl~~~ 241 (374)
|++|++||+.+++....+..+... .+ .....-..++|+ + ..++.++.+ +.+.+||+.+.
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~Spd---g-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~ 102 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFD---EF-----GHSINDYSISPD---G-QFILLEYNYVKQWRHSYTASYDIYDLNKR 102 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTT---TC-----CSCCCEEEECTT---S-SEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred CCcEEEEECCCCceEEEEechhhh---hh-----cccccceEECCC---C-CEEEEEECCeeeEEEccceEEEEEECCCC
Confidence 789999999999876555432110 00 000000123332 3 246666665 56779999753
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-----------------CCeEEE
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-----------------PGISGT 304 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-----------------~~v~~~ 304 (374)
....+..|...+...+|+|++..++.+ .|+.|.+|++.......+ ....+. ....++
T Consensus 103 --~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l---t~~g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 103 --QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI---TWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp --EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC---CSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred --cEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE---cCCCCccceecCcccccccchhcCCCcce
Confidence 244566778889999999999988877 578999999875432211 011111 112358
Q ss_pred EECCCCCEEEEEeCCC------------------------------------eEEEEEccC---Ce--EEEEec------
Q 017296 305 SIRPDSKIAATAGWDR------------------------------------RVRIYNYRK---GS--ALAILK------ 337 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg------------------------------------~v~iwd~~~---~~--~~~~~~------ 337 (374)
.|||||++||.++.|. ++++||+.+ ++ ....+.
T Consensus 177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~ 256 (740)
T 4a5s_A 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (740)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCC
Confidence 8999999999876432 578899988 62 222343
Q ss_pred ccCCceEEEEEeCCCCEEEEEe----CCCcEEEecCCC
Q 017296 338 YHHATCNAVSFSSDCKLMASAS----EDSTVALWELYP 371 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~s----~D~~v~~W~~~~ 371 (374)
+|...+..++|+|||+.++... .+..|++||+..
T Consensus 257 ~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 3778899999999999766542 344799998754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-09 Score=95.24 Aligned_cols=265 Identities=9% Similarity=0.001 Sum_probs=152.9
Q ss_pred cCCCcEEEEeCcccceeeeeee----eeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeeccee
Q 017296 37 TTGGELRIWDTVQHRTVSSSWV----HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (374)
Q Consensus 37 s~D~~v~vWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~ 112 (374)
+.+++|.++|..+++....+.. .........+.+. ++...++...+++|.+||..+++... .+..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~----~i~~---- 82 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVG----RITG---- 82 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEE----EEEC----
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEE----EcCC----
Confidence 4589999999998875543311 0000111223332 23455666678999999998874311 1100
Q ss_pred eeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCc
Q 017296 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (374)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~ 192 (374)
...+... . +.++ .+ +.++...++.|.+||+++++....+....
T Consensus 83 ------~~~p~~i------------------~-----------~~~~-g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~ 125 (328)
T 3dsm_A 83 ------FTSPRYI------------------H-----------FLSD-EK-AYVTQIWDYRIFIINPKTYEITGYIECPD 125 (328)
T ss_dssp ------CSSEEEE------------------E-----------EEET-TE-EEEEEBSCSEEEEEETTTTEEEEEEECTT
T ss_pred ------CCCCcEE------------------E-----------EeCC-Ce-EEEEECCCCeEEEEECCCCeEEEEEEcCC
Confidence 0000000 0 0011 22 33333357899999999988766554221
Q ss_pred cCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe-cCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe
Q 017296 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (374)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s 271 (374)
... .......+. . .+...+++.. .++.|.++|+++. .....+.. ......+.+++++..++++.
T Consensus 126 ~~~---~~~~p~~i~--~--------~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~-g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 126 MDM---ESGSTEQMV--Q--------YGKYVYVNCWSYQNRILKIDTETD-KVVDELTI-GIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CCT---TTCBCCCEE--E--------ETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC-SSCBCCCEECTTSEEEEEBC
T ss_pred ccc---cCCCcceEE--E--------ECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc-CCCccceEEcCCCCEEEEEC
Confidence 000 000111111 1 1222344444 4899999999763 33334433 23446788898887666655
Q ss_pred cC----------CeEEEEEcCCCCCeEEEEEeeecC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE--Eecc
Q 017296 272 AD----------QKIVLYNLDHSTGSCVIKKEINLE-RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILKY 338 (374)
Q Consensus 272 ~D----------~~i~lwd~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~ 338 (374)
.+ +.|.++|.+.. +.. ..+... ......++|+|+++.|..+.. +|.+||..+++... .+..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~--~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~ 264 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETF--TVE--KQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEF 264 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTT--EEE--EEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCC
T ss_pred CCccCCccccCCceEEEEECCCC--eEE--EEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecC
Confidence 54 78999987643 322 222221 235789999999998877654 99999998877532 1222
Q ss_pred cCCceEEEEEeC-CCCEEEEE----eCCCcEEEecCC
Q 017296 339 HHATCNAVSFSS-DCKLMASA----SEDSTVALWELY 370 (374)
Q Consensus 339 h~~~v~~v~~sp-~~~~las~----s~D~~v~~W~~~ 370 (374)
+......++++| ++++.++. ..++.|.+|+..
T Consensus 265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 246788999999 56677776 678999999875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-09 Score=91.71 Aligned_cols=100 Identities=6% Similarity=-0.072 Sum_probs=75.5
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
....+++.+++..+++...++.|..||.+ ++....... . ....++.+.+++.++++++.+++|..+|..+|+.+
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---G~~~w~~~~--~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPN---GQLLNSVKL--S-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTT---SCEEEEEEC--S-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCC---CCEEEEEEC--C-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 34445677888888899999999999975 333333222 1 23556788999999998888889999999999999
Q ss_pred EEecccC------CceEEEEEeCCCCEEEEEe
Q 017296 334 AILKYHH------ATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 334 ~~~~~h~------~~v~~v~~sp~~~~las~s 359 (374)
..+..+. ..+..++..++|..+++.+
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 8886442 2378888999999888774
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-09 Score=95.15 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=166.2
Q ss_pred EEEEeCCCCEEEEecC-----CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc----------ccCe
Q 017296 23 DVCFHQTKPILFAGTT-----GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGT 87 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~-----D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~~ 87 (374)
.....|+++.++.... ++.|.+.|..+++.+..+...... . +.+++ ++++++.+. .+++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~--va~sp--DG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--N--PVVAD--DGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--E--EEECT--TSSCEEEEEEEEEETTEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--c--EEECC--CCCEEEEEcccccccccCCCCCE
Confidence 3456789988887765 679999999998887776543322 2 56666 567666554 4678
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|.+||..+++... .+... ..... .. ...+... .+.+++ +++.++
T Consensus 111 VsviD~~t~~v~~----~I~v~----------~g~r~---~~-------g~~P~~~-----------a~spDG-k~lyVa 154 (386)
T 3sjl_D 111 VEVFDPVTLLPTA----DIELP----------DAPRF---LV-------GTYPWMT-----------SLTPDG-KTLLFY 154 (386)
T ss_dssp EEEECTTTCCEEE----EEEET----------TCCCC---CB-------SCCGGGE-----------EECTTS-SEEEEE
T ss_pred EEEEECCCCeEEE----EEECC----------Ccccc---cc-------CCCCceE-----------EEcCCC-CEEEEE
Confidence 9999998864211 11000 00000 00 0000000 122333 444444
Q ss_pred cc-CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~-~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.. .++.|.++|+++++.+.++.-.. |..+ .+ .+...+++.+.||.+.+.++...+....
T Consensus 155 n~~~~~~VsVID~~t~~vv~tI~v~g--------------~~~~---~P---~g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 155 QFSPAPAVGVVDLEGKAFKRMLDVPD--------------CYHI---FP---TAPDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCS--------------EEEE---EE---EETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred EcCCCCeEEEEECCCCcEEEEEECCC--------------ccee---ec---CCCceeEEECCCCCEEEEECCCCCeEEE
Confidence 33 36799999999999887774321 1111 11 1112466788899999999865333222
Q ss_pred eeecCc----cCeE-EEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee----------cCCCCeEEEEECCCC
Q 017296 247 AMKVHL----EPVL-CLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN----------LERPGISGTSIRPDS 310 (374)
Q Consensus 247 ~~~~h~----~~v~-~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~ 310 (374)
....+. .++. ...|+ +++. ++-.+.+|++.+.|+........ ..+. ....+...++++|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~~~~v~--~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEEC--CCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCCcceee--cceeccccccccccccCCCcceeeECCCC
Confidence 111111 2222 13444 3443 44466689999999865432211 1111 001233457889998
Q ss_pred CEEEEEeC----------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEE-EeCCCcEEEecCCC
Q 017296 311 KIAATAGW----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMAS-ASEDSTVALWELYP 371 (374)
Q Consensus 311 ~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las-~s~D~~v~~W~~~~ 371 (374)
+.+..+.. .++|.+.|..+++.++.+.-. ..+++++|+||++ +|.+ ...++.|.++|...
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 87765532 257999999999988877632 3688999999997 5555 45699999999754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-09 Score=93.71 Aligned_cols=134 Identities=11% Similarity=0.073 Sum_probs=81.0
Q ss_pred CcEEEEeccCCCCceeeee--cCccCeEEEEEecCCCceEEEecC----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 231 GSILVWDIRNPGIPLTAMK--VHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~s~D----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
+.|.+||.+.... ...+. .+...+..+.+++++..+++...+ ....+|.++..++....... .......+
T Consensus 112 ~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~i 187 (333)
T 2dg1_A 112 GGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---NISVANGI 187 (333)
T ss_dssp CEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---EESSEEEE
T ss_pred ceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---CCCcccce
Confidence 4566666543221 11111 234567888898888765555431 23444444433322221111 11246789
Q ss_pred EECCCCCEE-EEEeCCCeEEEEEccC-CeEEEE--------ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 305 SIRPDSKIA-ATAGWDRRVRIYNYRK-GSALAI--------LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 305 ~~sp~~~~l-~s~~~dg~v~iwd~~~-~~~~~~--------~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+|+|++++| ++...++.|.+||+.+ ++.+.. +.++ ..+..+++.++|+++++...++.|.+|+.
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 999999865 4555689999999963 332221 1222 46788999999998888888899999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-10 Score=108.17 Aligned_cols=294 Identities=10% Similarity=0.006 Sum_probs=152.1
Q ss_pred CeEEeecCCCcee---------EEEEe--CCCCE-EEEe-cCCCcEEEEeCc--c-cceeeeeeeee---ceeeeEEecc
Q 017296 10 PVAVLRGHRASVT---------DVCFH--QTKPI-LFAG-TTGGELRIWDTV--Q-HRTVSSSWVHS---AAHGIVSVAT 70 (374)
Q Consensus 10 ~~~~l~gH~~~V~---------~l~~~--~~~~~-l~s~-s~D~~v~vWd~~--~-~~~~~~~~~~~---~~~~~~~~~~ 70 (374)
....+.+|...|. ..+|+ |||+. |+.+ ..+..|.+|++. . ++ ...+.... ....+..++|
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEE
T ss_pred CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEE
Confidence 4556777877776 66676 89987 5544 446677777765 2 33 22322211 1234567778
Q ss_pred CCccccceeeecccc----------CeEEEEecCC------CCCCCCCceeee-ecceeeeeeeeeccccccccccCCCC
Q 017296 71 GPSIGLNKVISQGRD----------GTVKCWDIEN------GGLSSNPSLTIK-TNSYHFCKLSLVKEPYANAKQANEPK 133 (374)
Q Consensus 71 ~~~~~~~~l~s~~~D----------~~vrvwd~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (374)
++ |++.|+.++.| .+|.+||+.+ ++.. .+. .....
T Consensus 138 sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~l~~~~~~~--------------------- 189 (662)
T 3azo_A 138 LP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-----ELSDDAHRF--------------------- 189 (662)
T ss_dssp ET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-----ESSCSCSSE---------------------
T ss_pred CC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-----EEEecCCCc---------------------
Confidence 77 67888888877 5899999976 3210 000 00000
Q ss_pred cccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC-------CeEEEEecC-CCc--eeEEeccCccCCCCCcCCCC
Q 017296 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL-------SEVEIWDLN-TAE--RCTRLHQNSCGGSPNFSSKG 203 (374)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~i~vWd~~-~~~--~~~~~~~~~~~~~~~~~~~~ 203 (374)
.. .-.+.+ +++++++++... ..|.+||+. +++ ....+....
T Consensus 190 ---------~~--------~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~----------- 240 (662)
T 3azo_A 190 ---------VT--------GPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP----------- 240 (662)
T ss_dssp ---------EC--------CCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-----------
T ss_pred ---------cc--------CceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-----------
Confidence 00 000122 334454444322 479999998 562 222332110
Q ss_pred CcceeEEEeeecCCCCCceEEEEEecCCc--EEEEeccCCCCceeeeecCccC--------eEEEEEecCCCceEEEecC
Q 017296 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEP--------VLCLSIDESCNGGISGGAD 273 (374)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~~s~s~D 273 (374)
...... ..+.+ ++. .++++..++. |.+||+.. +........+... +..+.|.+++..+++++.
T Consensus 241 ~~~~~~-~~~sp---dg~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 241 EEAIAQ-AEWAP---DGS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp TBCEEE-EEECT---TSC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred CceEcc-eEECC---CCe-EEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 000111 12333 243 5677777884 55555533 2222222222222 567888888888888888
Q ss_pred CeEEEEEcCCCCCeEEEEEeeecCCCCeEEE-EECCCCCEEEEEeCCCeEEEE--EccCCeEEEEecccCCceEEEEEeC
Q 017296 274 QKIVLYNLDHSTGSCVIKKEINLERPGISGT-SIRPDSKIAATAGWDRRVRIY--NYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 274 ~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~~~~l~s~~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
++++||.++..++.. ..+..+...+..+ +++++.-++++++.+....+| |+.+++.......|...+....+.+
T Consensus 314 ~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 390 (662)
T 3azo_A 314 GAAVLGILDPESGEL---VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPE 390 (662)
T ss_dssp SSCEEEEEETTTTEE---EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCC
T ss_pred CccEEEEEECCCCcE---EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCc
Confidence 999999665433332 2333444456655 555444445566667655555 5556664433344443333333333
Q ss_pred CCCEEEEEeCCCcEEEecCCC
Q 017296 351 DCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 351 ~~~~las~s~D~~v~~W~~~~ 371 (374)
..+..+.+..+..|..|-+.|
T Consensus 391 ~~~~~~~~~dg~~i~~~~~~P 411 (662)
T 3azo_A 391 PQIRTFTAPDGREIHAHIYPP 411 (662)
T ss_dssp CEEEEEECTTSCEEEEEEECC
T ss_pred ceEEEEEcCCCCEEEEEEECC
Confidence 333334433444566664433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-08 Score=87.30 Aligned_cols=282 Identities=9% Similarity=-0.053 Sum_probs=158.4
Q ss_pred EEeCCCCEEEEecC--CC---cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc----------ccCeEE
Q 017296 25 CFHQTKPILFAGTT--GG---ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVK 89 (374)
Q Consensus 25 ~~~~~~~~l~s~s~--D~---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~~vr 89 (374)
...+++++++.... .. +|.++|..+++.+..+.... .- .+++++ ++++++.+. .+++|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~---~p-~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---LP-NPVAAH--SGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC---CC-CeEECC--CCCEEEEEeccccccccCCCCCeEE
Confidence 44577887776653 22 88999999888766554321 11 455665 666666553 468899
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||..+.+... .+... ..... .. ...+.. ..+.+ +++++.++..
T Consensus 101 viD~~t~~~~~----~i~~~----------~~~~~----~~------g~~p~~-----------~~~sp-DG~~l~v~n~ 144 (373)
T 2mad_H 101 VFDPVTFLPIA----DIELP----------DAPRF----DV------GPYSWM-----------NANTP-NNADLLFFQF 144 (373)
T ss_pred EEECCCCcEEE----EEECC----------Ccccc----cc------CCCccc-----------eEECC-CCCEEEEEec
Confidence 99997653211 00000 00000 00 000000 01123 3344554443
Q ss_pred C-CCeEEEEecCCCceeEE-eccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 170 Q-LSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 170 ~-d~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
. ++.|.++| .+++.... +.... |.. +.+. +...+++.+.||.+..+|. ... ....
T Consensus 145 ~~~~~v~viD-~t~~~~~~~i~~~~--------------~~~---~~~~---~~~~~~~~~~dg~~~~vd~-~g~-~~~~ 201 (373)
T 2mad_H 145 AAGPAVGLVV-QGGSSDDQLLSSPT--------------CYH---IHPG---APSTFYLLCAQGGLAKTDH-AGG-AAGA 201 (373)
T ss_pred CCCCeEEEEE-CCCCEEeEEcCCCc--------------eEE---EEeC---CCceEEEEcCCCCEEEEEC-CCc-EEEE
Confidence 3 57899999 99887666 43210 111 1111 2223566778999999998 532 2211
Q ss_pred ee-----cCccCe-EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--------cCCCCeEEEEECCCCCEE
Q 017296 248 MK-----VHLEPV-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGISGTSIRPDSKIA 313 (374)
Q Consensus 248 ~~-----~h~~~v-~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l 313 (374)
.. ....++ ....+.+++..++..+..+.+.+.|+.............. ....+...++|+|+++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 11 112222 1223344333444444677888888864322211111000 011223447899998877
Q ss_pred EEEeC----------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEe-CCCcEEEecCCCC
Q 017296 314 ATAGW----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYPP 372 (374)
Q Consensus 314 ~s~~~----------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s-~D~~v~~W~~~~~ 372 (374)
..+.. .+.|.+.|..+++.+.++.. ......++|+|||+ +++++. .++.|.++|....
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 66543 35899999999998888853 34688999999999 777776 5999999998643
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-08 Score=86.75 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=84.8
Q ss_pred ccCeEEEEEe----cCCCceE-EEecCCeEEEEEcCCCCCeEEEE---EeeecCC-CCeEEEEECCCCCEEEEEeCCCeE
Q 017296 252 LEPVLCLSID----ESCNGGI-SGGADQKIVLYNLDHSTGSCVIK---KEINLER-PGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 252 ~~~v~~~~~~----~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~---~~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
......+.++ +++..++ +...++.|.+||++. ++..... .....+. .....+++++++++.++...++.|
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-CCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 3445677888 8775544 445688999999762 2221111 1111121 347789999999998888889999
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCC
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYP 371 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~ 371 (374)
.+||..+++.+..+..+...+.+++|+|+|+ ++++...++.|..|++..
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999987777767776778899999999999 556666678898888753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.1e-09 Score=90.26 Aligned_cols=190 Identities=11% Similarity=0.135 Sum_probs=121.3
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec-CCcEEEEeccCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-dg~i~iwdl~~~~ 242 (374)
+.++...++.|.+||.. ++.+..+...... ... ......+ .+. ...+. .+++... ++.|.+||. + +
T Consensus 43 l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~--~~~----~~~p~~i-~~~--~~~g~-l~v~~~~~~~~i~~~d~-~-g 109 (286)
T 1q7f_A 43 IIVADTNNHRIQIFDKE-GRFKFQFGECGKR--DSQ----LLYPNRV-AVV--RNSGD-IIVTERSPTHQIQIYNQ-Y-G 109 (286)
T ss_dssp EEEEEGGGTEEEEECTT-SCEEEEECCBSSS--TTC----BSSEEEE-EEE--TTTTE-EEEEECGGGCEEEEECT-T-S
T ss_pred EEEEECCCCEEEEECCC-CcEEEEecccCCC--ccc----ccCceEE-EEE--cCCCe-EEEEcCCCCCEEEEECC-C-C
Confidence 44455567899999987 5555444321000 000 0011111 111 11222 3444433 899999994 3 3
Q ss_pred Cceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 243 IPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 243 ~~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
..+..+. .+...+..+++++++..+++...++.|.+||.+. ..........+......++++|+++++++...++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 3333332 2445788999999988777777889999998643 22211111122345889999999998888888999
Q ss_pred EEEEEccCCeEEEEeccc--CCceEEEEEeCCCCEEEEEeCCC-cEEEecCC
Q 017296 322 VRIYNYRKGSALAILKYH--HATCNAVSFSSDCKLMASASEDS-TVALWELY 370 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~las~s~D~-~v~~W~~~ 370 (374)
|++||. +++.+..+..+ ...+..++++|+|+++++...++ .|++|+..
T Consensus 187 i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 187 VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 999997 56666666543 36789999999999999888886 99999853
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-09 Score=92.96 Aligned_cols=258 Identities=8% Similarity=-0.045 Sum_probs=146.4
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~ 99 (374)
....|++. .+.+.++...++.|.+||..+++.+..+.... ....+++++ ++...++...++.|.+||+.+++..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~---~p~~i~~~~--~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---SPRYIHFLS--DEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCS---SEEEEEEEE--TTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCC---CCcEEEEeC--CCeEEEEECCCCeEEEEECCCCeEE
Confidence 34667774 35566666778999999999998776664222 233445543 4444455557899999999876321
Q ss_pred CCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc-CCCeEEEEe
Q 017296 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSEVEIWD 178 (374)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~vWd 178 (374)
. .+... . ... .. ..+.... ..+++ +.++.. .+++|.++|
T Consensus 119 ~----~i~~g----------~-~~~---~~--------~~p~~i~-------------~~~~~-lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 119 G----YIECP----------D-MDM---ES--------GSTEQMV-------------QYGKY-VYVNCWSYQNRILKID 158 (328)
T ss_dssp E----EEECT----------T-CCT---TT--------CBCCCEE-------------EETTE-EEEEECTTCCEEEEEE
T ss_pred E----EEEcC----------C-ccc---cC--------CCcceEE-------------EECCE-EEEEcCCCCCEEEEEE
Confidence 0 00000 0 000 00 0000000 01223 333443 478999999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC----------CcEEEEeccCCCCceeee
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED----------GSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d----------g~i~iwdl~~~~~~~~~~ 248 (374)
+++++....+.....+ ..+. +. +.+. .+++...+ +.|.++|.++. .....+
T Consensus 159 ~~t~~~~~~i~~g~~p---------~~i~-----~~---~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~ 219 (328)
T 3dsm_A 159 TETDKVVDELTIGIQP---------TSLV-----MD---KYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQF 219 (328)
T ss_dssp TTTTEEEEEEECSSCB---------CCCE-----EC---TTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEE
T ss_pred CCCCeEEEEEEcCCCc---------cceE-----Ec---CCCC-EEEEECCCccCCccccCCceEEEEECCCC-eEEEEE
Confidence 9999877666432111 1111 11 1232 34444433 78999998653 223333
Q ss_pred ecC-ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEE----eCCCeE
Q 017296 249 KVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATA----GWDRRV 322 (374)
Q Consensus 249 ~~h-~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~----~~dg~v 322 (374)
... ......+++++++..++.+.. .|.+||.+..+. ...............++++| ++++.++. ..+++|
T Consensus 220 ~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~--~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 220 KFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV--PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp ECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC--CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred ecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce--eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 322 236789999998887776644 888898864331 10011111124578899999 56566665 578999
Q ss_pred EEEEccCCeEEEEecccCCceEEEEE
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSF 348 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~ 348 (374)
.+||.. ++.+.++.. ......++|
T Consensus 296 ~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred EEECCC-CCEEEEEEe-ccCcceEEE
Confidence 999997 888877753 233455555
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-07 Score=90.10 Aligned_cols=307 Identities=13% Similarity=0.051 Sum_probs=166.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCc--ccceeeeeeeeeceeeeEEeccCC--ccccceeeecc-c
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV--QHRTVSSSWVHSAAHGIVSVATGP--SIGLNKVISQG-R 84 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~ 84 (374)
.+.++... ..+..++|+|+|++|++++.|+.|.+||+. +++.+..+.... .-..+++++ .+++++++.+. .
T Consensus 189 v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 189 IKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp EEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCSTTCTTTEEEEEEEE
T ss_pred EEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccccCCCCCEEEEEEcc
Confidence 34444432 245689999999999999999999999985 666665554322 234556662 02566776555 5
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
+++|.++|..+.+.. ..+..... ... . ....+...+.. ......++ .+
T Consensus 265 ~~~v~ViD~~t~~~~----~~i~~~~~----------~~~------~----~~~~p~~rva~-------i~~s~~~~-~~ 312 (567)
T 1qks_A 265 PPQYVIMDGETLEPK----KIQSTRGM----------TYD------E----QEYHPEPRVAA-------ILASHYRP-EF 312 (567)
T ss_dssp TTEEEEEETTTCCEE----EEEECCEE----------CTT------T----CCEESCCCEEE-------EEECSSSS-EE
T ss_pred CCeEEEEECCCCcEE----EEEecccc----------ccc------c----ccccCCCceEE-------EEEcCCCC-EE
Confidence 699999998765321 11111000 000 0 00000000000 00001122 23
Q ss_pred EEcccCCCeEEEEecCCCceeE--EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 165 AVAGEQLSEVEIWDLNTAERCT--RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
+++-...+.|.++|....+.+. .+... .... . ..+.+ .+...+++...++.|.++|+++.
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~------------~~~~-d-~~~~p---dgr~~~va~~~sn~V~ViD~~t~- 374 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAE------------RFLH-D-GGLDG---SHRYFITAANARNKLVVIDTKEG- 374 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECC------------SSEE-E-EEECT---TSCEEEEEEGGGTEEEEEETTTT-
T ss_pred EEEecCCCeEEEEecCCCccceeeeeecc------------cccc-C-ceECC---CCCEEEEEeCCCCeEEEEECCCC-
Confidence 3444566889999987654221 11110 0000 0 01222 34434455667899999999864
Q ss_pred Cceeeeec-----CccCeEEEEEecCCCce-EEEe-cCCeEEEEEcCCCCC---eEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 243 IPLTAMKV-----HLEPVLCLSIDESCNGG-ISGG-ADQKIVLYNLDHSTG---SCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 243 ~~~~~~~~-----h~~~v~~~~~~~~~~~~-~s~s-~D~~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
.....+.. |...-..+ ++|++..+ +++. .+++|.++|.+.... .+.....+.....+-.-+.++|++++
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence 32333322 32212222 57764334 4443 568999999875221 01112233332223344778999999
Q ss_pred EEEEeC-------CCeEEEEEccCC-----e-EEEEec--------ccCCceEEEEEeCCCCEEEEEe-----CCCcEEE
Q 017296 313 AATAGW-------DRRVRIYNYRKG-----S-ALAILK--------YHHATCNAVSFSSDCKLMASAS-----EDSTVAL 366 (374)
Q Consensus 313 l~s~~~-------dg~v~iwd~~~~-----~-~~~~~~--------~h~~~v~~v~~sp~~~~las~s-----~D~~v~~ 366 (374)
+..... .++|.++|+.+. . .+..+. .....+..+.|+|+|+++..+. .++.|-+
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v 533 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 533 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE
Confidence 887653 359999999876 2 123332 1235789999999999765543 3788988
Q ss_pred ecCCC
Q 017296 367 WELYP 371 (374)
Q Consensus 367 W~~~~ 371 (374)
+|...
T Consensus 534 ~D~~t 538 (567)
T 1qks_A 534 VDDKT 538 (567)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 87643
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-09 Score=104.34 Aligned_cols=137 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred CcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCCceEEEecC----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 231 GSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGAD----QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 231 g~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
..|.+||+..+... ...+..+...+... +.+++..++..+.+ +.|.+||++...... ......+...+..++
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF--DTVVPESKDNLESVG 370 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEE--EEEECCCSSEEEEEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcccc--EEEecCCCCeEEEEE
Confidence 47888888653112 34444455444443 33666667666553 458999986532111 111222233456677
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcc-CCeEEEEeccc-CCceEEEEEeCCCCEEE----EEeCCCcEEEecCCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYH-HATCNAVSFSSDCKLMA----SASEDSTVALWELYP 371 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~h-~~~v~~v~~sp~~~~la----s~s~D~~v~~W~~~~ 371 (374)
++ ++.++++...|+..+||.+. +++....+..+ ...+..++++|+++.|+ +....++|++||+..
T Consensus 371 ~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 371 IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 77 66788899999998888664 46666666653 56788999999998665 233457899998754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-09 Score=95.39 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=118.0
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee---
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM--- 248 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~--- 248 (374)
++|.+||..+++.+....... +. ....+ .+. +.+. .+++.+.++.|+.||.......+..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~------~~---~p~gi---a~d---~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~ 132 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNL------FY---LPHGL---SID---TDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRS 132 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTT------CS---SEEEE---EEC---TTSC-EEEEETTTTEEEEECTTCSSCCSEEESBT
T ss_pred CcEEEEECCCCeEEeccCCCc------cC---CceEE---EEC---CCCC-EEEEECCCCEEEEEeCCCCeEEEEEeccc
Confidence 579999999888765443110 00 01111 121 2233 56777888999999985321133333
Q ss_pred ------ecCccCeEEEEEec-CCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeec--------CCCCeEEEEECCC-CC
Q 017296 249 ------KVHLEPVLCLSIDE-SCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINL--------ERPGISGTSIRPD-SK 311 (374)
Q Consensus 249 ------~~h~~~v~~~~~~~-~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~--------~~~~v~~~~~sp~-~~ 311 (374)
..+......+++++ ++..+++.+ .++.|++||.+. .......... +......++|+|+ +.
T Consensus 133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence 24455788999998 777777776 699999998542 2222111111 1123788999998 77
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEec--ccCCceEEEEEeC------CCCEEEEEeCCCcEEEecCCC
Q 017296 312 IAATAGWDRRVRIYNYRKGSALAILK--YHHATCNAVSFSS------DCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~v~~sp------~~~~las~s~D~~v~~W~~~~ 371 (374)
++++...+++|++||..+++.+..+. .+...+..++|+| +|+..++.+.+..|++|+...
T Consensus 210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 77888889999999998899888774 4556788999999 333333344556899998654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-09 Score=96.18 Aligned_cols=189 Identities=13% Similarity=0.075 Sum_probs=112.8
Q ss_pred CCceEEEcccCCC--eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 160 GPKYMAVAGEQLS--EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 160 ~~~~~~~~~~~d~--~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
+++++++++..++ .|.+||+.+++........... .... .+.++ + ..|+.++.++.|.+||
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~--------~~~~-----~~spd---g-~~l~~~~~~~~l~~~d 108 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDN--------TFGG-----FLSPD---D-DALFYVKDGRNLMRVD 108 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBC--------SSSC-----EECTT---S-SEEEEEETTTEEEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCC--------ccce-----EEcCC---C-CEEEEEeCCCeEEEEE
Confidence 3455555555455 4888899888754333221100 0000 13332 2 2577788889999999
Q ss_pred ccCCCCceeeeecCccCeEEEE--EecCCCceEE----------------------EecCCeEEEEEcCCCCCeEEEEEe
Q 017296 238 IRNPGIPLTAMKVHLEPVLCLS--IDESCNGGIS----------------------GGADQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 238 l~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~s----------------------~s~D~~i~lwd~~~~~~~~~~~~~ 293 (374)
+... ........+...+.... +++++..++. .+.+..|.+||++.......
T Consensus 109 ~~~g-~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l---- 183 (388)
T 3pe7_A 109 LATL-EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI---- 183 (388)
T ss_dssp TTTC-CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE----
T ss_pred CCCC-cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe----
Confidence 9763 33333444444443333 3677765543 22457899999875432211
Q ss_pred eecCCCCeEEEEECC-CCCEEEEEeCC------CeEEEEEccCCeEEEEecccC--CceEEEEEeCCCCEEEEEeC--C-
Q 017296 294 INLERPGISGTSIRP-DSKIAATAGWD------RRVRIYNYRKGSALAILKYHH--ATCNAVSFSSDCKLMASASE--D- 361 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp-~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~--D- 361 (374)
..+...+..++|+| |++.|+....+ ..|.++|...++ ...+..+. ..+...+|+|||+.|+..+. +
T Consensus 184 -~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 184 -LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp -EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred -ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 12234578899999 99988876653 367777876544 34444444 35788999999998766443 2
Q ss_pred --CcEEEecCCCC
Q 017296 362 --STVALWELYPP 372 (374)
Q Consensus 362 --~~v~~W~~~~~ 372 (374)
..|++|++..+
T Consensus 262 ~~~~l~~~d~~~g 274 (388)
T 3pe7_A 262 PDRFIYSADPETL 274 (388)
T ss_dssp CCEEEEEECTTTC
T ss_pred CcceEEEEecCCC
Confidence 23999998643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-07 Score=85.34 Aligned_cols=141 Identities=8% Similarity=0.000 Sum_probs=95.0
Q ss_pred EEEEecCCcEEEEeccCCCCceeee-----ecCccC--eEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEee-
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAM-----KVHLEP--VLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEI- 294 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~-----~~h~~~--v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~- 294 (374)
|+.+..++.|..||+.... ...+ .++... ...++|+++ +..+++....+.|+.|+.+.. ...+....
T Consensus 233 lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~ 308 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSAT 308 (409)
T ss_dssp EEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTT
T ss_pred EEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCC
Confidence 4446667889999986532 2222 112222 238999994 555566677889999987643 11111110
Q ss_pred --e--------cCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEccCCeEEEEeccc---------------CCceEEEEE
Q 017296 295 --N--------LERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSALAILKYH---------------HATCNAVSF 348 (374)
Q Consensus 295 --~--------~~~~~v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~h---------------~~~v~~v~~ 348 (374)
. ..-.....++|+|++++.++-. .+++|+.||+.+++ +.++.++ ......+++
T Consensus 309 ~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giav 387 (409)
T 3hrp_A 309 QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICY 387 (409)
T ss_dssp CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEE
T ss_pred CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEE
Confidence 0 0012467899999999888777 78999999987776 4445444 246899999
Q ss_pred eCCCCEEEEEeCCCcEEEecC
Q 017296 349 SSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 349 sp~~~~las~s~D~~v~~W~~ 369 (374)
.|+|.++++-..++.|+.+++
T Consensus 388 d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 388 DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CSSSEEEEEESTTCEEEEEEE
T ss_pred cCCCCEEEEECCCCeEEEEEe
Confidence 999999999888999988765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-08 Score=87.89 Aligned_cols=185 Identities=13% Similarity=0.050 Sum_probs=126.8
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
-++++++.++.|.+||.++++.+.++..... ...... .+.+ .+. .++ +.++.|..||. + +
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------~~~~~~---~~~p---dG~-ilv--s~~~~V~~~d~-~-G 65 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------WECNSV---AATK---AGE-ILF--SYSKGAKMITR-D-G 65 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTT---------CCCCEE---EECT---TSC-EEE--ECBSEEEEECT-T-S
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------CCCcCe---EECC---CCC-EEE--eCCCCEEEECC-C-C
Confidence 3567788899999999999998877754210 011111 1222 232 344 55788999998 4 4
Q ss_pred CceeeeecC-ccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeec----CCCCeEEEEECCCCCEEEEE
Q 017296 243 IPLTAMKVH-LEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINL----ERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 243 ~~~~~~~~h-~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s~ 316 (374)
..+-.+..+ ...+.++.+.+++..+++.+. ++.+..+|. +++.+....+.. +......+++.+++.++++.
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~---~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM---KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT---TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC---CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 445555543 246778888899998888877 667766664 344333322211 11124456789999999999
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
..+++|..||.+ |+.+.++..+ ..+.++.+.++|..+++++.++.|..+|...+
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred cCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 999999999997 9999888754 45667788899999999888888888876543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-07 Score=80.83 Aligned_cols=280 Identities=8% Similarity=-0.008 Sum_probs=158.2
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
.....+.+|+++++|.+.++...++.|.+||.. ++.. .+...........+++.+ +++..++...++.|..+|..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTT-
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEEECC--CCCEEEEecCCCeEEEECCC-
Confidence 345678999999999998888888999999987 5432 221111112345555554 45666666667889999976
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 175 (374)
++.. ... ..... . .+.... . ..++. +.++...++.|.
T Consensus 92 g~~~-----~~~-----------~~~~~---------~-----~~~~i~-----------~-~~~g~-l~v~~~~~~~i~ 128 (300)
T 2qc5_A 92 GGFT-----EYP-----------LPQPD---------S-----GPYGIT-----------E-GLNGD-IWFTQLNGDRIG 128 (300)
T ss_dssp SCEE-----EEE-----------CSSTT---------C-----CEEEEE-----------E-CSTTC-EEEEETTTTEEE
T ss_pred CCeE-----Eec-----------CCCCC---------C-----CCccce-----------E-CCCCC-EEEEccCCCeEE
Confidence 4310 000 00000 0 000000 0 01122 333444456888
Q ss_pred EEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCe
Q 017296 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (374)
Q Consensus 176 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v 255 (374)
.+|.. ++... +.... .......++ + + ..+. ..++...++.|..||. ...........+...+
T Consensus 129 ~~~~~-g~~~~-~~~~~--------~~~~~~~i~---~--d-~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 129 KLTAD-GTIYE-YDLPN--------KGSYPAFIT---L--G-SDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP 190 (300)
T ss_dssp EECTT-SCEEE-EECSS--------TTCCEEEEE---E--C-TTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EECCC-CCEEE-ccCCC--------CCCCceeEE---E--C-CCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc
Confidence 89887 54332 11100 000111111 1 1 1232 3444555788999987 3222111122344568
Q ss_pred EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE-
Q 017296 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA- 334 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~- 334 (374)
..+.+++++...++....+.|..||.. +.... .........+.++++++++++.++...++.|.+||. +++...
T Consensus 191 ~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 191 VGITSGNDGALWFVEIMGNKIGRITTT---GEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECTT---CCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred ceEEECCCCCEEEEccCCCEEEEEcCC---CcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence 899999888655555567789999873 22221 112223345789999999997777767899999998 454332
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+......+.++++.++|++.++.. . .|..++
T Consensus 266 ~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 266 QLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp ECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred ECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 2333456788999999999777655 4 444444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-08 Score=96.86 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=57.3
Q ss_pred CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CC--eEEEEEccCCeEEEEecc-cCCceEEEEEe
Q 017296 274 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DR--RVRIYNYRKGSALAILKY-HHATCNAVSFS 349 (374)
Q Consensus 274 ~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s 349 (374)
+.|..+|++....... ..+..+...+. .|+|+++.|+.... ++ .|++||+..+ ....+.. +...+..+.++
T Consensus 305 ~~l~~~d~~~~~~~~~--~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~ 379 (693)
T 3iuj_A 305 RRLVTVDAANPGPAHW--RDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGK 379 (693)
T ss_dssp CEEEEEETTSCCGGGC--EEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCC
T ss_pred CEEEEEeCCCCCcccc--EEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecC
Confidence 5788888865432100 11222333343 89999888776554 44 6888988644 4444432 44567778888
Q ss_pred CCCCEEEEEeCC----CcEEEecCCC
Q 017296 350 SDCKLMASASED----STVALWELYP 371 (374)
Q Consensus 350 p~~~~las~s~D----~~v~~W~~~~ 371 (374)
|+++.|+....+ +++..||+..
T Consensus 380 ~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 380 HDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp TTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred CCCCEEEEEecCCCCCCEEEEEECCC
Confidence 998866554434 7888888753
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-06 Score=74.54 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=78.8
Q ss_pred ccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEE---eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 252 LEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKK---EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
....+.+++++++..+ ++.+.++.|..|+++..++...... .+.........+++.++|++.++....+.|.+||.
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 3445778999988766 4566788999999864444322111 11112235678999999998888778889999999
Q ss_pred cCCeEEEEecccCCceEEEEEe-CCCCEE-EEEe
Q 017296 328 RKGSALAILKYHHATCNAVSFS-SDCKLM-ASAS 359 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~s-p~~~~l-as~s 359 (374)
.+++.+..+..+...+.+++|. ||++.| +|..
T Consensus 228 ~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 228 VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 8899988888787889999998 888754 4444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-07 Score=86.78 Aligned_cols=280 Identities=13% Similarity=0.052 Sum_probs=159.9
Q ss_pred CCCCEEEEecC-C----CcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc----------ccCeEEEEe
Q 017296 28 QTKPILFAGTT-G----GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWD 92 (374)
Q Consensus 28 ~~~~~l~s~s~-D----~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~~vrvwd 92 (374)
++++.++.... + +.|.+.|..+++.+..+..... . .+++++ ++++++.+. .+++|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~--P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL--P--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS--C--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC--C--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEE
Confidence 46665554433 3 6999999999988777654332 2 455666 566666554 467999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc-CC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QL 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d 171 (374)
..+++... .+.. ...... .. ...+.. ..+.+++ +++.++.. .+
T Consensus 156 ~~t~~vv~----~I~v----------~g~~r~---~~-------g~~P~~-----------~~~spDG-k~lyV~n~~~~ 199 (426)
T 3c75_H 156 PVTFLPIA----DIEL----------PDAPRF---LV-------GTYQWM-----------NALTPDN-KNLLFYQFSPA 199 (426)
T ss_dssp TTTCCEEE----EEEE----------TTCCCC---CB-------SCCGGG-----------SEECTTS-SEEEEEECSSS
T ss_pred CCCCcEEE----EEEC----------CCcccc---cc-------CCCcce-----------EEEcCCC-CEEEEEecCCC
Confidence 98864211 1100 000000 00 000000 0122333 44444443 36
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee----e
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT----A 247 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~----~ 247 (374)
+.|.+.|+.+.+.+.++.-.. +.. ..+. +...+++.+.||.+.+.++.. ..... .
T Consensus 200 ~~VsVID~~t~kvv~~I~v~g--------------~~~---~~p~---g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~~~ 258 (426)
T 3c75_H 200 PAVGVVDLEGKTFDRMLDVPD--------------CYH---IFPA---SPTVFYMNCRDGSLARVDFAD-GETKVTNTEV 258 (426)
T ss_dssp CEEEEEETTTTEEEEEEECCS--------------EEE---EEEE---ETTEEEEEETTSSEEEEECCT-TCCEEEECCC
T ss_pred CeEEEEECCCCeEEEEEEcCC--------------cee---eccC---CCcEEEEEcCCCCEEEEECCC-CcEEEEeeee
Confidence 789999999998877765311 001 1111 112356677888888888833 22221 1
Q ss_pred eecCccCe-EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--------cCCCCeEEEEECCCCCEEEEEeC
Q 017296 248 MKVHLEPV-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 248 ~~~h~~~v-~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
+.....++ ..+.+.+++..++..+..+++.+.|+...+........+. ....+...++|+|+++.+..+..
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 11112221 1244566666666667788899988854321110000000 00011223789999886655432
Q ss_pred ----------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEe-CCCcEEEecCCC
Q 017296 319 ----------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 371 (374)
Q Consensus 319 ----------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s-~D~~v~~W~~~~ 371 (374)
+++|.+.|..+.+.++++... ...+.++|+|||+ +++++. .++.|.++|...
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 357999999999998888632 3588999999999 888877 599999999854
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=89.31 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=100.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++++..++.|..||.... ...+..+...+..+++++++..+++...++.|.+||.+..................+.
T Consensus 42 l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 118 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN 118 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred EEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence 4677888999999998753 5556667778999999999887666667799999998543321111111001112456
Q ss_pred EEEECCCCCEEEEEeC-----------------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 303 GTSIRPDSKIAATAGW-----------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~-----------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
.++++|+|+++++... .+.|..++.. ++ +..+..+...+..++|+|||+.|++.+.++.|+
T Consensus 119 ~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~ 196 (296)
T 3e5z_A 119 DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATH 196 (296)
T ss_dssp CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEE
T ss_pred CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEE
Confidence 7999999998887321 2345555543 44 444556777889999999999888888899999
Q ss_pred EecCC
Q 017296 366 LWELY 370 (374)
Q Consensus 366 ~W~~~ 370 (374)
+|++.
T Consensus 197 ~~~~~ 201 (296)
T 3e5z_A 197 RYCLN 201 (296)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99975
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=93.00 Aligned_cols=143 Identities=10% Similarity=0.005 Sum_probs=88.2
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEE-------------------EEEecCCCceEEE-----ecCCeEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC-------------------LSIDESCNGGISG-----GADQKIVL 278 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~~s~-----s~D~~i~l 278 (374)
.|+..+.++.|.+||+... ........+...... ..+.|++..++.. ..+..|.+
T Consensus 94 ~l~~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETL-EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EEEEEETTTEEEEEETTTC-CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEEcCCcEEEEECCCC-CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 5777778889999998753 323333323321111 1234455444332 45678999
Q ss_pred EEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCC------CeEEEEEccCCeEEEEeccc--CCceEEEEEe
Q 017296 279 YNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWD------RRVRIYNYRKGSALAILKYH--HATCNAVSFS 349 (374)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s 349 (374)
||++........ .+...+..+.|+| +++.|+..+.+ ..|.+||+..++.. .+..+ ...+..++|+
T Consensus 173 ~d~~~g~~~~~~-----~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 173 VDIETGELEVIH-----QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWI 246 (396)
T ss_dssp EETTTCCEEEEE-----EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEEC
T ss_pred EECCCCcEEeec-----cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEEC
Confidence 998754322211 1234578899999 78877655543 36888888655433 33333 2368889999
Q ss_pred CCCCEEEEEeCC-----CcEEEecCCCC
Q 017296 350 SDCKLMASASED-----STVALWELYPP 372 (374)
Q Consensus 350 p~~~~las~s~D-----~~v~~W~~~~~ 372 (374)
|||++|+.++.+ +.|++|++..+
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCC
Confidence 999988777654 45999998543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-06 Score=78.17 Aligned_cols=272 Identities=12% Similarity=0.081 Sum_probs=146.1
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEec----------CCCcEEEEeCcccceeeeeeeeece-----eeeEEeccCCccc
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPSIG 75 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 75 (374)
+.++..-..+ .|+++|+|++|+.+. .++.|.+||..+++.+..+...... ..-..+++++ +
T Consensus 72 ~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp--D 147 (386)
T 3sjl_D 72 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP--D 147 (386)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT--T
T ss_pred EEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC--C
Confidence 3444433444 399999999887765 3678999999998877665432100 0111244555 6
Q ss_pred cceeeecc--ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC
Q 017296 76 LNKVISQG--RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (374)
Q Consensus 76 ~~~l~s~~--~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (374)
+++++.+. .+++|.++|+.+++... .+ ....|. ...
T Consensus 148 Gk~lyVan~~~~~~VsVID~~t~~vv~----tI---~v~g~~---------------------~~~-------------- 185 (386)
T 3sjl_D 148 GKTLLFYQFSPAPAVGVVDLEGKAFKR----ML---DVPDCY---------------------HIF-------------- 185 (386)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEE----EE---ECCSEE---------------------EEE--------------
T ss_pred CCEEEEEEcCCCCeEEEEECCCCcEEE----EE---ECCCcc---------------------eee--------------
Confidence 67777654 36899999998874211 11 000010 000
Q ss_pred CCCCCCCCceEEEcccCCCeEEEEecCC-CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCc
Q 017296 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNT-AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (374)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~i~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~ 232 (374)
+.+.+.++ +.+.|+++.+.++.+ ++....... .+..... .......|. ...+. ++-.+.+|.
T Consensus 186 ----P~g~~~~~-~~~~DG~~~~v~~~~~g~v~~~~~~-------~~~~~~~-~~~~~~~~~--~~dG~--~~~vs~~g~ 248 (386)
T 3sjl_D 186 ----PTAPDTFF-MHCRDGSLAKVAFGTEGTPEITHTE-------VFHPEDE-FLINHPAYS--QKAGR--LVWPTYTGK 248 (386)
T ss_dssp ----EEETTEEE-EEETTSCEEEEECCSSSCCEEEECC-------CCSCTTS-CBCSCCEEE--TTTTE--EEEEBTTSE
T ss_pred ----cCCCceeE-EECCCCCEEEEECCCCCeEEEeecc-------eeccccc-cccccceeE--cCCCc--EEEEeCCCE
Confidence 01112222 334467788888876 454221111 1111000 000000111 11232 333555899
Q ss_pred EEEEeccCCCC-ceeeee---------c-CccCeEEEEEecCCCceEEEec----------CCeEEEEEcCCCCCeEEEE
Q 017296 233 ILVWDIRNPGI-PLTAMK---------V-HLEPVLCLSIDESCNGGISGGA----------DQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 233 i~iwdl~~~~~-~~~~~~---------~-h~~~v~~~~~~~~~~~~~s~s~----------D~~i~lwd~~~~~~~~~~~ 291 (374)
|.+.|+..... ...... + .......+.+++++..++..-. .++|.+.|+... +....
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~~~ 326 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERLAK 326 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEEEE
T ss_pred EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--eEEEE
Confidence 99999864321 111111 0 1223445777777666655432 256777777543 33322
Q ss_pred EeeecCCCCeEEEEECCCCC-EEEEE-eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCC
Q 017296 292 KEINLERPGISGTSIRPDSK-IAATA-GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
-... ..+.+++|+||++ +|+++ ..+++|.++|..+++.++++..- +..+.+.+++|
T Consensus 327 i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 327 FEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 2221 2477899999997 66655 45899999999999998887632 23345566665
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-06 Score=75.76 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=73.6
Q ss_pred CccCeEEEEEecCCCceEEEecC------CeEEEEEcCCCCCeEEEEEe-eecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 251 HLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D------~~i~lwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.......++|++++..++.+... +.|..|+++... ...... ..........+++.++|++.++. .+ .|.
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~ 261 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVC 261 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEE
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEE
Confidence 34456778999998877666554 789999986432 111111 11112234578999999965544 44 599
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+||. +++.+..+..+. .+..++|.|+++.|..++.++..++
T Consensus 262 ~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 262 VFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred EECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 9998 577777776554 6889999999988877777765444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-07 Score=83.08 Aligned_cols=280 Identities=14% Similarity=0.103 Sum_probs=147.0
Q ss_pred EeecCCCceeEEEEeCCCCEEEEec--CCCcEEEEeCcccceeeeeee--e---eceeeeEEeccCCccccceeeeccc-
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWV--H---SAAHGIVSVATGPSIGLNKVISQGR- 84 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s--~D~~v~vWd~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~l~s~~~- 84 (374)
++.........|+++++|+++++.. .++.++||.+.+++ +..+.. + ........+++++ +++..++...
T Consensus 11 ~v~~~~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~--~g~L~v~D~g~ 87 (343)
T 2qe8_A 11 VVAELSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDG--NGIVWMLDNGN 87 (343)
T ss_dssp EEEEESSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECS--SSEEEEEECHH
T ss_pred EEEEcCCCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcC--CCcEEEEcCCC
Confidence 3333337789999999999998864 23436777765443 222110 0 0112355666665 3454444333
Q ss_pred ----cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 85 ----DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 85 ----D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+..|.+||+.+++.. +.. .+.. ... .... .+.... +.+.+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~-------~~~-------~~~~-~~~--~~~~--------~~~~v~-----------vd~~~ 131 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLS-------RVI-------YLPP-PIT--LSNS--------FVNDLA-----------VDLIH 131 (343)
T ss_dssp HHTSCCEEEEEETTTTEEE-------EEE-------ECCT-TTS--CTTC--------CCCEEE-----------EETTT
T ss_pred CcCCCCeEEEEECCCCeEE-------EEE-------ECCh-hhc--cccc--------ccceEE-----------EecCC
Confidence 578999999876421 000 0000 000 0000 000000 01112
Q ss_pred CceEEEccc---CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 161 PKYMAVAGE---QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 161 ~~~~~~~~~---~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
..+.++.. .++.|.+||+.+++....+..+.. ..... .. +.. .+ ..+.+.+.+|.++.|.
T Consensus 132 -g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~-----~~~~~--~~-----~~~---~g-~~~~~~~~~g~~~~~~ 194 (343)
T 2qe8_A 132 -NFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG-----IAPED--ID-----LVI---DG-VPVQIGQPDGTVIRPH 194 (343)
T ss_dssp -TEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT-----TSCCS--CC-----CEE---TT-EECBEECTTSCEECCC
T ss_pred -CEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc-----ccccc--cc-----eeE---CC-EEEEeccCCCceecee
Confidence 23333333 567999999998876555432100 00000 00 000 11 1233455566665542
Q ss_pred ccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC---CCeE----EE-EEeeecCCCCeEEEEECCC
Q 017296 238 IRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS---TGSC----VI-KKEINLERPGISGTSIRPD 309 (374)
Q Consensus 238 l~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~---~~~~----~~-~~~~~~~~~~v~~~~~sp~ 309 (374)
..+..+++++++..++.+..++. ++|.++.. .+.. .. ......+......++++++
T Consensus 195 ---------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~ 258 (343)
T 2qe8_A 195 ---------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD 258 (343)
T ss_dssp ---------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred ---------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence 13456889999887877766653 45544310 0000 00 0000011223557899999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
|.+.++...++.|.+||..+++....... +...+.+++|.++|+++++.+..+.+
T Consensus 259 G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 259 HNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred CCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 99999888899999999856664322222 24568999999999988887755444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-08 Score=86.92 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=92.3
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++++ .++.|++||+++.. .......|..++..+.+.+. .++.+..||++.+||+..... . . ....|+
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~--~--~----~~~~Vs 166 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST--K--Q----LAQNVT 166 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--E--E----EEESEE
T ss_pred EEEEE-cCCcEEEEEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--c--c----ccCCce
Confidence 46666 88999999997643 34445667778887766432 388999999999999974431 1 1 124699
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeE--EEEe------c---ccCCceEEEEEeCCCCEEEE
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAIL------K---YHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~------~---~h~~~v~~v~~sp~~~~las 357 (374)
+++|||+| ++.|..||++++|+...++. .+++ . +|...|.+|.|.++++++++
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999 67789999999998877664 5556 2 37789999999999998876
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=89.29 Aligned_cols=129 Identities=7% Similarity=-0.010 Sum_probs=91.4
Q ss_pred EEEEEecCCcEEEEeccCCC----------CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPG----------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
.+++|+.+ .+++|++.... .+.. ...+.. |+.|+| ++..++.+ .++.|++||+.......
T Consensus 51 ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~---- 120 (388)
T 1xip_A 51 LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFR---- 120 (388)
T ss_dssp EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEE----
T ss_pred EEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccC----
Confidence 46777776 56669875321 1111 223555 999999 66777777 88999999987543211
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
....+...+.++.+.+. .+++...||.+.+||+++++... +...|.+++|||+| ++.|..||++++|+.
T Consensus 121 ~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 121 TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence 12233445777666544 28888999999999998877543 45689999999999 677899999999965
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-07 Score=91.78 Aligned_cols=188 Identities=8% Similarity=-0.013 Sum_probs=112.2
Q ss_pred CCceEEEcccCC----CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCc---
Q 017296 160 GPKYMAVAGEQL----SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS--- 232 (374)
Q Consensus 160 ~~~~~~~~~~~d----~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~--- 232 (374)
++++++++.... .+|++||+.+++.............. .+.++ +. .|+.++.++.
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~--------------~wspD---g~-~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCM--------------AWTHD---GK-GMFYNAYPQQDGK 196 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCE--------------EECTT---SS-EEEEEECCCCSSC
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceE--------------EEEeC---CC-EEEEEEECCcccc
Confidence 344555543332 38999999999865432211100111 12222 22 3555555544
Q ss_pred -------------EEEEeccCCCCc-eeeee--cCccCeEEEEEecCCCceEEEec-----CCeEEEEEcCC------CC
Q 017296 233 -------------ILVWDIRNPGIP-LTAMK--VHLEPVLCLSIDESCNGGISGGA-----DQKIVLYNLDH------ST 285 (374)
Q Consensus 233 -------------i~iwdl~~~~~~-~~~~~--~h~~~v~~~~~~~~~~~~~s~s~-----D~~i~lwd~~~------~~ 285 (374)
|++|++.+.... ...+. .|...+..+.+++++..++..+. +..|.+||++. ..
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999653211 12222 24455788999999998877664 67899999975 22
Q ss_pred CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC----CeEEEEEccCCe--EEEEecccCC--ceEEEEEeCCCCEEEE
Q 017296 286 GSCVIKKEINLERPGISGTSIRPDSKIAATAGWD----RRVRIYNYRKGS--ALAILKYHHA--TCNAVSFSSDCKLMAS 357 (374)
Q Consensus 286 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d----g~v~iwd~~~~~--~~~~~~~h~~--~v~~v~~sp~~~~las 357 (374)
.... .+..+...+.. .|+|+++.|+..+.+ +.|.+||+.+++ ....+..|.. .+..++|++++.++++
T Consensus 277 ~~~~---~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 277 LKWV---KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp CCCE---EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred cceE---EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 1111 11222333333 588998877655543 369999998764 2344444543 6888999988889999
Q ss_pred EeCCCcEEEecC
Q 017296 358 ASEDSTVALWEL 369 (374)
Q Consensus 358 ~s~D~~v~~W~~ 369 (374)
+..|+..+||-+
T Consensus 353 ~~~~g~~~l~~~ 364 (710)
T 2xdw_A 353 YLHDVKNTLQLH 364 (710)
T ss_dssp EEETTEEEEEEE
T ss_pred EEECCEEEEEEE
Confidence 999997666533
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-07 Score=76.79 Aligned_cols=141 Identities=9% Similarity=0.013 Sum_probs=98.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
++.+..++.|..||..... ...+. .....+..+++++++..+++...++.|.+|+..... .... .........
T Consensus 80 l~v~~~~~~i~~~d~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~~~~--~~~~~~~p~ 153 (270)
T 1rwi_B 80 VYVTDFNNRVVTLAAGSNN--QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--QTVL--PFTGLNDPD 153 (270)
T ss_dssp EEEEETTTEEEEECTTCSC--CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS--CEEC--CCCSCCSCC
T ss_pred EEEEcCCCEEEEEeCCCce--EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce--eEee--ccccCCCce
Confidence 3333338899999986422 22222 233578899999988766676778899999754322 1111 111123467
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++++|+++++++...++.|.+||............+...+..+++.++|.++++...++.|.+|+..
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 89999999988877778999999987665443333344678999999999888888888999999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.7e-07 Score=89.54 Aligned_cols=179 Identities=9% Similarity=-0.022 Sum_probs=107.2
Q ss_pred cccCCCeEEEEecCCCcee-EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCc-------------
Q 017296 167 AGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS------------- 232 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~------------- 232 (374)
.|+.+.+|++||+.+++.+ ............ .+.++ +. .|+.++.|..
T Consensus 142 ~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~--------------~wspD---g~-~l~~~~~d~~~~~~~~~~~~~~~ 203 (695)
T 2bkl_A 142 NAADEAVLHVIDVDSGEWSKVDVIEGGKYATP--------------KWTPD---SK-GFYYEWLPTDPSIKVDERPGYTT 203 (695)
T ss_dssp TTCSCCEEEEEETTTCCBCSSCCBSCCTTCCC--------------EECTT---SS-EEEEEECCCCTTSCGGGGGGGCE
T ss_pred CCCceEEEEEEECCCCCCcCCcccCcccccce--------------EEecC---CC-EEEEEEecCCCCCccccCCCCCE
Confidence 4455679999999998754 111000000011 13322 22 4666666655
Q ss_pred EEEEeccCCCC---ceeeeecCccCeEEEEEecCCCceEEEecCC----eEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 233 ILVWDIRNPGI---PLTAMKVHLEPVLCLSIDESCNGGISGGADQ----KIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 233 i~iwdl~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~----~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
|++|++.+... .+.....|...+..+.+++++..++.++.++ .|.+|+... +.... +..+........
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~--~~~~~---l~~~~~~~~~~~ 278 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE--KDFRL---LVKGVGAKYEVH 278 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--SSCEE---EEECSSCCEEEE
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--CceEE---eecCCCceEEEE
Confidence 99999975431 2222233456788999999999888777665 555554432 22111 111223344445
Q ss_pred ECCCCCEEEEEeC---CCeEEEEEccCCeE---EEEeccc-CCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 306 IRPDSKIAATAGW---DRRVRIYNYRKGSA---LAILKYH-HATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 306 ~sp~~~~l~s~~~---dg~v~iwd~~~~~~---~~~~~~h-~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+ |++++++.+.. ++.|.+||+.+++. ...+..+ ...+..++|+ ++.++++...|+..+||.+.
T Consensus 279 ~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 279 A-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp E-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred e-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 5 56665555442 58899999977653 3333333 4467888988 77899999999999999654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.4e-06 Score=72.21 Aligned_cols=141 Identities=9% Similarity=-0.034 Sum_probs=96.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
..++...++.|..||. ...........+...+..+.+++++...++...++.|..||. . +.... .........+.
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--g~~~~-~~~~~~~~~~~ 186 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S--GDITE-FKIPTPASGPV 186 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T--CCEEE-EECSSTTCCEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C--CcEEE-eeCCCCCCcce
Confidence 3455556789999998 322222222234457889999998876666666789999987 2 22221 11222234578
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEE-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+++++++++.++...++.|.+||. +++... .+..+...+..+++.++|++.++...++.|..|+.
T Consensus 187 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 187 GITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred eEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 9999999998887777899999998 666432 23335567899999999998777767788888875
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-06 Score=82.81 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=43.2
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+|++..||+.+++.+..++.+. .+..-.+...+.+++.++.|+.++.||...+.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 4789999999999988876544 33444666788899999999999999987653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-07 Score=83.46 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=82.1
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC-------eEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-------KIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~-------~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
..|.+||+... ..+..+.. . .+..+.++|++ .+++++.++ ...+|.++ ++....... + ..+..
T Consensus 152 ~~l~~~d~~~~-~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~-~~~~~ 221 (347)
T 2gop_A 152 TTFWIFDTESE-EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE---K-VSFYA 221 (347)
T ss_dssp EEEEEEETTTT-EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE---E-ESEEE
T ss_pred ceEEEEECCCC-eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEecc---C-cceee
Confidence 57889998653 32234444 3 78889999998 666665542 55677665 333221111 1 22333
Q ss_pred EEECCCCCEEEEEeCC--------CeEEEEEccCCeEEEEecccCCceEE-EEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGWD--------RRVRIYNYRKGSALAILKYHHATCNA-VSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~h~~~v~~-v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|||++|+.++.+ ..|.+|| +++.......|...+.. +.|+ |+ ++++++.|+.++|| +.
T Consensus 222 --~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 222 --VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp --EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred --ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 39999998877754 3677777 56554445566778886 8999 88 99999999999999 75
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.7e-06 Score=83.61 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=42.9
Q ss_pred CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 320 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 320 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
|+|..||+.+++.+..+. +...++...+..++.+++.++.|+.+++||...+
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 789999999999988776 4445556667788888999999999999998755
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-05 Score=68.63 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=73.8
Q ss_pred cCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCC-e----EEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 253 EPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTG-S----CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~-~----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.....+++++++..++ +.+.++.|.+||++..++ . ..+ ............+++.+++.+.++...++.|.+||
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~-~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF-IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE-EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE-EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 3456788898887654 445678999999862222 1 111 11111223467899999999888777778999999
Q ss_pred ccCCeEEEEecccCCceEEEEEe-CCCCEE-EEEeCC
Q 017296 327 YRKGSALAILKYHHATCNAVSFS-SDCKLM-ASASED 361 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l-as~s~D 361 (374)
. +++.+..+..+...+.+++|. |+++.| ++...+
T Consensus 258 ~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 258 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp T-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred C-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 8 677777777777789999998 888755 444444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-06 Score=79.03 Aligned_cols=267 Identities=11% Similarity=-0.028 Sum_probs=145.3
Q ss_pred EEEEecCCC----cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc----------ccCeEEEEecCCCC
Q 017296 32 ILFAGTTGG----ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG----------RDGTVKCWDIENGG 97 (374)
Q Consensus 32 ~l~s~s~D~----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~D~~vrvwd~~~~~ 97 (374)
..++...++ +|.|.|..+++.+.++...... .+.+++ ++++++.+. .+++|.+||+.+++
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P----~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS----LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC----EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC----ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 444555455 7889999999888777644322 355666 556666553 47899999999874
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc-CCCeEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE-QLSEVEI 176 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~v 176 (374)
... .+... ..+.. .....+... .++++++ ++.++.. ..+.+.+
T Consensus 108 vv~----~I~v~----------~~~~~----------~~g~~P~~i-----------a~SpDGk-~lyVan~~~~~~v~V 151 (368)
T 1mda_H 108 PIA----DIELP----------DAPRF----------SVGPRVHII-----------GNCASSA-CLLFFLFGSSAAAGL 151 (368)
T ss_dssp EEE----EEEET----------TSCSC----------CBSCCTTSE-----------EECTTSS-CEEEEECSSSCEEEE
T ss_pred EEE----EEECC----------Ccccc----------ccCCCcceE-----------EEcCCCC-EEEEEccCCCCeEEE
Confidence 311 11000 00000 000001110 1223443 3444332 2467888
Q ss_pred --EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC----CCCcee----
Q 017296 177 --WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN----PGIPLT---- 246 (374)
Q Consensus 177 --Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~----~~~~~~---- 246 (374)
+|+.+ +..+....+ .. +.+ .+...+++.+.||.+...|+.. .+....
T Consensus 152 ~~iD~~t---v~~i~v~~~-----------~~------~~p---~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 152 SVPGASD---DQLTKSASC-----------FH------IHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp EETTTEE---EEEEECSSC-----------CC------CEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEchhh---ceEEECCCc-----------eE------Ecc---CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 99887 333321100 00 001 1111355667788888888864 111110
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-------CC---CCeEEEEECCCCCEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-------ER---PGISGTSIRPDSKIAATA 316 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-------~~---~~v~~~~~sp~~~~l~s~ 316 (374)
.+.....|. . .+++..++..+. +.+.+.|+...+.... ..+.. .. .+...++|+||++.+..+
T Consensus 209 ~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~--~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 209 AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK--AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEE--CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEE--EEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 011122343 2 344444455555 8888888754322211 11110 00 111227899998877654
Q ss_pred eC---------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEe-CCCcEEEecCCC
Q 017296 317 GW---------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 371 (374)
Q Consensus 317 ~~---------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s-~D~~v~~W~~~~ 371 (374)
.. ++.+.++|+.+.+.+..+.... ....++|+|||+ ++++.. .+++|.++|...
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 32 2356699999999888776444 688999999998 566667 599999999854
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.5e-08 Score=89.85 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 29 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
++.+|++++.|+.|..||..+|+.+-.+.. ..+.+..+.. ++..+++++.|+.|+.||..+|+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~--~g~~~v~~s~dg~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHV--EEPAFLPDPNDGSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-------CCEEECTTTCCEEEC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEc--CCCEEEEeCCCCEEEEEECCCCc
Confidence 577899999999999999999887644432 1222222222 34567777889999999998774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.2e-05 Score=68.86 Aligned_cols=259 Identities=11% Similarity=0.022 Sum_probs=138.9
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEec----------CCCcEEEEeCcccceeeeeeee-ec----eeeeEEeccCCcc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSI 74 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~ 74 (374)
.+.++..-..+ .++|+|||++|+.+. .+++|.++|..+.+.+..+... .. ...-..+.+++
T Consensus 59 ~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-- 134 (373)
T 2mad_H 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-- 134 (373)
T ss_pred EEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC--
Confidence 33444433333 889999999988875 3678999999887766554321 00 00012345555
Q ss_pred ccceeeeccc--cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCC
Q 017296 75 GLNKVISQGR--DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDS 152 (374)
Q Consensus 75 ~~~~l~s~~~--D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (374)
++++|+.+.. +.+|.++| .+++... .+ .....|. .
T Consensus 135 DG~~l~v~n~~~~~~v~viD-~t~~~~~----~~--i~~~~~~---------------------~--------------- 171 (373)
T 2mad_H 135 NNADLLFFQFAAGPAVGLVV-QGGSSDD----QL--LSSPTCY---------------------H--------------- 171 (373)
T ss_pred CCCEEEEEecCCCCeEEEEE-CCCCEEe----EE--cCCCceE---------------------E---------------
Confidence 6778777653 57899999 8774311 00 0000000 0
Q ss_pred CCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCc
Q 017296 153 KDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGS 232 (374)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~ 232 (374)
+.+.++..+ ++...|+++.++|+ +++......... .+ .....+... ..+.++ +...++. +..+.
T Consensus 172 ---~~~~~~~~~-~~~~~dg~~~~vd~-~g~~~~~~~~~~-----~~-~~~~p~~~~-~~~~~~---~~~~~~~-~~~~~ 235 (373)
T 2mad_H 172 ---IHPGAPSTF-YLLCAQGGLAKTDH-AGGAAGAGLVGA-----ML-TAAQNLLTQ-PAQANK---SGRIVWP-VYSGK 235 (373)
T ss_pred ---EEeCCCceE-EEEcCCCCEEEEEC-CCcEEEEEeccc-----cc-cCCcceeec-ceeEec---CCEEEEE-cCCce
Confidence 001122222 23445788999999 776543221100 00 000000000 011111 1112333 35678
Q ss_pred EEEEeccCCCCc-eeeeec----------CccCeEEEEEecCCCceEEEec----------CCeEEEEEcCCCCCeEEEE
Q 017296 233 ILVWDIRNPGIP-LTAMKV----------HLEPVLCLSIDESCNGGISGGA----------DQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 233 i~iwdl~~~~~~-~~~~~~----------h~~~v~~~~~~~~~~~~~s~s~----------D~~i~lwd~~~~~~~~~~~ 291 (374)
|.+.|+...... ...+.. .......+.+++++..++.+.. .+.|.+.|+... +..
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--~vv-- 311 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--QTS-- 311 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--EEE--
Confidence 888888542211 111110 1122344677877776655432 357888887643 222
Q ss_pred EeeecCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEEccCCeEEEEe
Q 017296 292 KEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 336 (374)
..+... .....++|+||++ +++++. .+++|.++|..+++.++++
T Consensus 312 ~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 312 SQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 222221 2477899999999 777777 4899999999999988774
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-05 Score=79.43 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=53.3
Q ss_pred CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-CceEEEEEeCCC
Q 017296 274 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDC 352 (374)
Q Consensus 274 ~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~ 352 (374)
+.|..||+.+ ++........ ....+..+.+++.+++.++.||.+++||.++++.+..+.... ....-+.|.++|
T Consensus 457 g~l~A~D~~t--G~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 457 GRLLAWDPVA--QKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp EEEEEEETTT--TEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cEEEEEeCCC--CcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC
Confidence 7899999864 4443333221 123344566677788889999999999999999998886433 223345677899
Q ss_pred C-EEEE
Q 017296 353 K-LMAS 357 (374)
Q Consensus 353 ~-~las 357 (374)
+ +++.
T Consensus 532 ~~~v~~ 537 (677)
T 1kb0_A 532 RQYVSV 537 (677)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 8 4444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-06 Score=82.04 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCC-ceEEEEEeCC
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSD 351 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp~ 351 (374)
+|+++.||+.+. +....... +.. ...-.++..+.+++.|+.||.++.||.++|+.+..++.+.. ...-+.|..|
T Consensus 454 ~g~l~A~D~~tG--~~~W~~~~--~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 454 SGKLIAWDPVKQ--QAAWEVPY--VTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD 528 (689)
T ss_dssp EEEEEEEETTTT--EEEEEEEE--SSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ceeEEEEECCCC--CeEeEccC--CCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence 478999998644 44333222 211 22235556677888999999999999999999988875432 2234677889
Q ss_pred CC-EEEEEe
Q 017296 352 CK-LMASAS 359 (374)
Q Consensus 352 ~~-~las~s 359 (374)
|+ +++..+
T Consensus 529 G~qyv~~~~ 537 (689)
T 1yiq_A 529 GEQYVTFMA 537 (689)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 98 555443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-08 Score=93.22 Aligned_cols=177 Identities=11% Similarity=0.014 Sum_probs=91.6
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++++.|+.|..||..+|+.+..+.... .... .+. ..+ ..+++++.||.|..||.++...
T Consensus 12 v~~gs~dg~v~a~d~~tG~~~W~~~~~~------------~~s~---p~~---~~g-~~~v~~s~dg~l~a~d~~tG~~- 71 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRTGSIKWTLKEDP------------VLQV---PTH---VEE-PAFLPDPNDGSLYTLGSKNNEG- 71 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCC------------SCCC---C---------CCEEECTTTCCEEEC-----CC-
T ss_pred EEEEcCCCEEEEEECCCCCEEEEecCCC------------ceec---ceE---cCC-CEEEEeCCCCEEEEEECCCCce-
Confidence 4556678999999999999876664310 0000 011 112 1366678999999999865332
Q ss_pred eeeeecCcc-CeE-EEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 245 LTAMKVHLE-PVL-CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 245 ~~~~~~h~~-~v~-~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
+-....+.. .+. ...+.. ...+++++.|+.+..||.+.+.. ..... .+. ...++|++..+++++.|+.|
T Consensus 72 ~w~~~~~~~~~~~~sp~~~~-~~~v~~g~~dg~v~a~D~~tG~~--~w~~~--~~~----~~~~~p~~~~v~~~~~dg~v 142 (369)
T 2hz6_A 72 LTKLPFTIPELVQASPCRSS-DGILYMGKKQDIWYVIDLLTGEK--QQTLS--SAF----ADSLSPSTSLLYLGRTEYTI 142 (369)
T ss_dssp SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEE
T ss_pred eeeeeccCccccccCceEec-CCEEEEEeCCCEEEEEECCCCcE--EEEec--CCC----cccccccCCEEEEEecCCEE
Confidence 222222211 010 001111 23467788899999999865432 22111 111 23567788889999999999
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEeCCC---CEEEEEeCCCcEEEecCCCC
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFSSDC---KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~las~s~D~~v~~W~~~~~ 372 (374)
..||.++++.+..+..+. ....++.++. ..++.++.|+.|+.||...+
T Consensus 143 ~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred EEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 999999998776654322 1223333332 45667888999999998654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.64 E-value=6.9e-06 Score=75.70 Aligned_cols=183 Identities=10% Similarity=-0.013 Sum_probs=111.7
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC--cEEEEeccCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILVWDIRNP 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg--~i~iwdl~~~ 241 (374)
+.++...++.|+.||+.+++......... ... + .+.+ .+. .++++..++ .|..||....
T Consensus 144 lyv~d~~~~~I~~id~~~g~~~~~~~~~~---------~~~---i---a~~~---~g~-~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDDNKVTTVHPGFK---------GGK---P---AVTK---DKQ-RVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEETCC---------BCB---C---EECT---TSS-EEEEEBSSTTCEEEEEEGGGT
T ss_pred EEEEecCCCcEEEEECCCCEEEEeeccCC---------CCc---e---eEec---CCC-cEEEEecCCCceEEEEEcCCC
Confidence 44455567899999998876543332110 000 1 1222 122 455665544 7888887643
Q ss_pred CCceeee----ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe--eecCCCCe-E-EEEECCC-CCE
Q 017296 242 GIPLTAM----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--INLERPGI-S-GTSIRPD-SKI 312 (374)
Q Consensus 242 ~~~~~~~----~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~--~~~~~~~v-~-~~~~sp~-~~~ 312 (374)
.. ...+ ......+..++++++...++.+..++.|..||.+... ...... .......- . .++|+|+ +.+
T Consensus 205 ~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 205 WA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred ce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 22 2222 1144567889999854456667778899999987543 221111 11111111 2 8999995 666
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEecccC---------------CceEEEEEeCCCCEEEEEe-CCCcEEEecCC
Q 017296 313 AATAGWDRRVRIYNYRKGSALAILKYHH---------------ATCNAVSFSSDCKLMASAS-EDSTVALWELY 370 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~~~~~~~~~h~---------------~~v~~v~~sp~~~~las~s-~D~~v~~W~~~ 370 (374)
+++-..+++|+.|+.. ++ +..+.++. .....++++|+|+++++-+ .+..|+.|++.
T Consensus 282 yv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp EEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred EEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 6777778999999875 33 33343332 4588999999999888888 89999999853
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-06 Score=81.70 Aligned_cols=134 Identities=5% Similarity=-0.015 Sum_probs=85.6
Q ss_pred cEEEEeccCCCC-ceeeeec--CccCeEEEEEecCCCceEEEecCC-----eEEEEEcCCCCCe-EEEEEeeecCCCCeE
Q 017296 232 SILVWDIRNPGI-PLTAMKV--HLEPVLCLSIDESCNGGISGGADQ-----KIVLYNLDHSTGS-CVIKKEINLERPGIS 302 (374)
Q Consensus 232 ~i~iwdl~~~~~-~~~~~~~--h~~~v~~~~~~~~~~~~~s~s~D~-----~i~lwd~~~~~~~-~~~~~~~~~~~~~v~ 302 (374)
.|.+|++.+... ....+.. +...+..+.+++++..++..+.++ .|.+||++..... .. .+..+.....
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~ 320 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT---ALIPDLKAQW 320 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE---EEECSSSSCE
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE---EecCCCCceE
Confidence 488999865321 1122222 233578899999998888776544 8999998754111 11 1112222333
Q ss_pred EEEECCCCCEEEEEeC----CCeEEEEEccCC--eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 303 GTSIRPDSKIAATAGW----DRRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.. ++|+++.|+..+. ++.|.+||+.++ +....+..+...+..++|. ++.++++...|+..+||.+.
T Consensus 321 ~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 321 DF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 33 3588888877765 345999999874 3334455555667778887 66788999999999998653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00015 Score=62.82 Aligned_cols=141 Identities=6% Similarity=-0.052 Sum_probs=95.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
..++...++.|..||.. .......+......+..+.+++++...++...++.|..+|.+ +.... .........+.
T Consensus 117 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~-~~~~~~~~~~~ 191 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT---GKLEE-YPLPTNAAAPV 191 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---CCEEE-EECSSTTCCEE
T ss_pred EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC---CcEEE-eeCCCCCCCcc
Confidence 34555557889999875 222212222234578899999988755566567889999873 22221 11222234578
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+++.+++++.++....+.|.+||. +++.... +..+...+.++++.++|++.++...++.|..|+.
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 9999999988887777789999998 5554332 3344567899999999997777766788888875
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00024 Score=64.28 Aligned_cols=268 Identities=8% Similarity=0.060 Sum_probs=146.5
Q ss_pred CCCEEEEecCCCcEEEEeCcccceeeeeeeeec-------eeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCC
Q 017296 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA-------AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 29 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~ 101 (374)
.+..|+.++.++.|..+|..+|+.+-....... ...+.. .+..++..++.++.|+.|..+|..+|+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~v~~~~g~l~a~d~~tG~~~-- 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG---GVTVSGGHVYIGSEKAQVYALNTSDGTVA-- 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE---EEEEETTEEEEEETTSEEEEEETTTCCEE--
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc---CceEeCCEEEEEcCCCEEEEEECCCCCEE--
Confidence 466788888899999999998876533222110 011111 11113357778888999999999988521
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~ 181 (374)
..... .. .. ... ....+. .++.+..++.+..+|.++
T Consensus 127 --W~~~~----------~~-~~-----~~~------------------------p~~~~~--~v~v~~~~g~l~~~d~~t 162 (376)
T 3q7m_A 127 --WQTKV----------AG-EA-----LSR------------------------PVVSDG--LVLIHTSNGQLQALNEAD 162 (376)
T ss_dssp --EEEEC----------SS-CC-----CSC------------------------CEEETT--EEEEECTTSEEEEEETTT
T ss_pred --EEEeC----------CC-ce-----EcC------------------------CEEECC--EEEEEcCCCeEEEEECCC
Confidence 00000 00 00 000 000111 233455678999999999
Q ss_pred CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc-------C
Q 017296 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE-------P 254 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~-------~ 254 (374)
++.+......... ...... .... . ..+ .++.++.++.|..+|.++.. .+-....... .
T Consensus 163 G~~~W~~~~~~~~----~~~~~~--~~~~--~----~~~--~v~~g~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 163 GAVKWTVNLDMPS----LSLRGE--SAPT--T----AFG--AAVVGGDNGRVSAVLMEQGQ-MIWQQRISQATGSTEIDR 227 (376)
T ss_dssp CCEEEEEECCC---------CCC--CCCE--E----ETT--EEEECCTTTEEEEEETTTCC-EEEEEECCC---------
T ss_pred CcEEEEEeCCCCc----eeecCC--CCcE--E----ECC--EEEEEcCCCEEEEEECCCCc-EEEEEecccCCCCccccc
Confidence 9877665432100 000000 0000 0 012 47778889999999987543 2222211100 0
Q ss_pred ---eEE-EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 255 ---VLC-LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 255 ---v~~-~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
+.. ..+. ...++.++.++.+..+|.+.. ....... .......... +..|..++.++.+..+|..++
T Consensus 228 ~~~~~~~p~~~--~~~v~~~~~~g~l~~~d~~tG--~~~w~~~----~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 228 LSDVDTTPVVV--NGVVFALAYNGNLTALDLRSG--QIMWKRE----LGSVNDFIVD--GNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp --CCCCCCEEE--TTEEEEECTTSCEEEEETTTC--CEEEEEC----CCCEEEEEEE--TTEEEEEETTCCEEEEETTTC
T ss_pred ccccCCCcEEE--CCEEEEEecCcEEEEEECCCC--cEEeecc----CCCCCCceEE--CCEEEEEcCCCeEEEEECCCC
Confidence 101 0111 234677788999999988643 3332222 1223333333 456777888999999999999
Q ss_pred eEEEEeccc-CCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 331 SALAILKYH-HATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 331 ~~~~~~~~h-~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.+...... ...+..... .+..|..++.++.|..+|...+
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 988766522 222222233 2456777888999999887654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-05 Score=67.33 Aligned_cols=182 Identities=13% Similarity=0.073 Sum_probs=108.9
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+.++...++.|..||..+++.. .+... .....+ .+. ..+. ++.+. ++.|.+||.++..
T Consensus 26 ~l~~~d~~~~~i~~~d~~~~~~~-~~~~~-----------~~~~~i---~~~---~dG~--l~v~~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 26 SLLFVDIPAKKVCRWDSFTKQVQ-RVTMD-----------APVSSV---ALR---QSGG--YVATI-GTKFCALNWKEQS 84 (297)
T ss_dssp EEEEEETTTTEEEEEETTTCCEE-EEECS-----------SCEEEE---EEB---TTSS--EEEEE-TTEEEEEETTTTE
T ss_pred EEEEEECCCCEEEEEECCCCcEE-EEeCC-----------CceEEE---EEC---CCCC--EEEEE-CCeEEEEECCCCc
Confidence 34455566789999999887642 22110 011111 122 2233 44444 5689999986432
Q ss_pred Cceeeeec-----CccCeEEEEEecCCCceEEEec---------CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 243 IPLTAMKV-----HLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 243 ~~~~~~~~-----h~~~v~~~~~~~~~~~~~s~s~---------D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
+..+.. ....++.+.+++++...++... .....+|.++.. +....... .......++|+|
T Consensus 85 --~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~---~~~~pngi~~sp 158 (297)
T 3g4e_A 85 --AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD---QVDISNGLDWSL 158 (297)
T ss_dssp --EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE---EESBEEEEEECT
T ss_pred --EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee---ccccccceEEcC
Confidence 222211 1235788999999885554422 234566666543 22211111 112357899999
Q ss_pred CCCEE-EEEeCCCeEEEEEc--cCCeE-----EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 309 DSKIA-ATAGWDRRVRIYNY--RKGSA-----LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 309 ~~~~l-~s~~~dg~v~iwd~--~~~~~-----~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
|++.| ++.+.++.|.+||+ .+++. +..+..+...+..+++.++|++.++...++.|..|+...
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 99866 45566899999997 44432 223333456788899999999888888888899998753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.0001 Score=66.71 Aligned_cols=274 Identities=12% Similarity=0.083 Sum_probs=147.1
Q ss_pred CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeee
Q 017296 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (374)
Q Consensus 29 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~ 108 (374)
++..|+.++.++.|..+|..+|+.+-...... .+ ...+...+..++.++.++.|..+|..+|+.. .....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---~~---~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~----W~~~~ 171 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG---EA---LSRPVVSDGLVLIHTSNGQLQALNEADGAVK----WTVNL 171 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSS---CC---CSCCEEETTEEEEECTTSEEEEEETTTCCEE----EEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC---ce---EcCCEEECCEEEEEcCCCeEEEEECCCCcEE----EEEeC
Confidence 45677778889999999999887653332211 11 1111112356778888999999999888521 00000
Q ss_pred cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEe
Q 017296 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (374)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~ 188 (374)
.. +... ..... .....+ . .++.+..++.+..+|.++++.+...
T Consensus 172 ----------~~-~~~~------------~~~~~------------~~~~~~-~-~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 172 ----------DM-PSLS------------LRGES------------APTTAF-G-AAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp ----------CC------------------CCCC------------CCEEET-T-EEEECCTTTEEEEEETTTCCEEEEE
T ss_pred ----------CC-Ccee------------ecCCC------------CcEEEC-C-EEEEEcCCCEEEEEECCCCcEEEEE
Confidence 00 0000 00000 000011 1 2344566789999999999876655
Q ss_pred ccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE
Q 017296 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI 268 (374)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 268 (374)
.............-.......+ . .. ..++.++.++.|..+|.++.. .+-.. .......+..+ +..++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~--~----~~--~~v~~~~~~g~l~~~d~~tG~-~~w~~--~~~~~~~~~~~--~~~l~ 281 (376)
T 3q7m_A 215 RISQATGSTEIDRLSDVDTTPV--V----VN--GVVFALAYNGNLTALDLRSGQ-IMWKR--ELGSVNDFIVD--GNRIY 281 (376)
T ss_dssp ECCC-----------CCCCCCE--E----ET--TEEEEECTTSCEEEEETTTCC-EEEEE--CCCCEEEEEEE--TTEEE
T ss_pred ecccCCCCcccccccccCCCcE--E----EC--CEEEEEecCcEEEEEECCCCc-EEeec--cCCCCCCceEE--CCEEE
Confidence 4221000000000000000000 0 01 147778889999999987643 22222 22334445444 33567
Q ss_pred EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEE
Q 017296 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF 348 (374)
Q Consensus 269 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 348 (374)
.++.++.+..+|.+.. +....... ..........+ .+..|+.++.+|.+..+|..+++.+.........+.+...
T Consensus 282 ~~~~~g~l~~~d~~tG--~~~w~~~~-~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~ 356 (376)
T 3q7m_A 282 LVDQNDRVMALTIDGG--VTLWTQSD-LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPV 356 (376)
T ss_dssp EEETTCCEEEEETTTC--CEEEEECT-TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCE
T ss_pred EEcCCCeEEEEECCCC--cEEEeecc-cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCE
Confidence 7888999999998644 33322220 11111222222 2456777889999999999999988777653333322111
Q ss_pred eCCCCEEEEEeCCCcEEEec
Q 017296 349 SSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 349 sp~~~~las~s~D~~v~~W~ 368 (374)
. .+..|..++.||.|..|+
T Consensus 357 ~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 A-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E-ETTEEEEEBTTSCEEEEE
T ss_pred E-ECCEEEEEeCCCEEEEEe
Confidence 1 244667788899999886
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-05 Score=67.85 Aligned_cols=138 Identities=13% Similarity=0.138 Sum_probs=89.7
Q ss_pred EEEEecCCcEEEEeccCCCCceeee-e-----cCccCeEEEEEecCCCceEEEecC---------------CeEEEEEcC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAM-K-----VHLEPVLCLSIDESCNGGISGGAD---------------QKIVLYNLD 282 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~-~-----~h~~~v~~~~~~~~~~~~~s~s~D---------------~~i~lwd~~ 282 (374)
+..+...+.|..||.. .. +..+ . .....+..+.+++++...++...+ +.|..+|.+
T Consensus 85 l~v~~~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 85 LFVADMRLGLLVVQTD-GT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp EEEEETTTEEEEEETT-SC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred EEEEECCCCEEEEeCC-CC--EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 4455545579999986 32 2222 1 112458899999988766666555 456666543
Q ss_pred CCCCeEEEEEeeecCCCCeEEEEEC----CCCCEE-EEEeCCCeEEEEEcc-CCe-----EEEEecccC-CceEEEEEeC
Q 017296 283 HSTGSCVIKKEINLERPGISGTSIR----PDSKIA-ATAGWDRRVRIYNYR-KGS-----ALAILKYHH-ATCNAVSFSS 350 (374)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l-~s~~~dg~v~iwd~~-~~~-----~~~~~~~h~-~~v~~v~~sp 350 (374)
+....... .......++++ |+++.+ ++...++.|.+||.. +++ ....+..+. ..+..+++.+
T Consensus 162 ---g~~~~~~~---~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 162 ---GQMIQVDT---AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ---SCEEEEEE---EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ---CCEEEecc---CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 22221111 11236788999 999765 444568999999986 444 233344444 6688899999
Q ss_pred CCCEEEEEeCCCcEEEecCC
Q 017296 351 DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 351 ~~~~las~s~D~~v~~W~~~ 370 (374)
+|+++++...++.|.+|+..
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp TCCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEcCCCEEEEEcCC
Confidence 99998888888999999875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00022 Score=65.53 Aligned_cols=248 Identities=11% Similarity=0.092 Sum_probs=132.0
Q ss_pred EEEEeCCCCEEEEec----------CCCcEEEEeCcccceeeeeeee-ec----eeeeEEeccCCccccceeeeccc--c
Q 017296 23 DVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVH-SA----AHGIVSVATGPSIGLNKVISQGR--D 85 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~s~~~--D 85 (374)
.++++|||++|+.+. .++.|.++|..+++.+..+... .. ...-..+.+++ ++++++.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCC
Confidence 789999999888775 4678999999998877665421 00 00011234555 6777776653 6
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|-+.|+.+++... .+.. ..+. ... +.++..+
T Consensus 200 ~~VsVID~~t~kvv~----~I~v---~g~~---------------------~~~------------------p~g~~~~- 232 (426)
T 3c75_H 200 PAVGVVDLEGKTFDR----MLDV---PDCY---------------------HIF------------------PASPTVF- 232 (426)
T ss_dssp CEEEEEETTTTEEEE----EEEC---CSEE---------------------EEE------------------EEETTEE-
T ss_pred CeEEEEECCCCeEEE----EEEc---CCce---------------------eec------------------cCCCcEE-
Confidence 889999998764211 0100 0000 000 0011111
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++.+.|+++.+.++.+++...... . .+......+... ..+.+ .+. .++..+..+.|.+.|+......+
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~-~------~~~v~~~p~~~~-~~~~~---dg~-~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNT-E------VFHTEDELLINH-PAFSL---RSG-RLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEEC-C------CCSCTTSCBCSC-CEECT---TTC-EEEEEBTTSEEEEEEECSSCEEE
T ss_pred EEEcCCCCEEEEECCCCcEEEEee-e------eeccCCCceeeE-eeecC---CCC-EEEEEeCCCcEEEEeccCCceEE
Confidence 222335666666765554432211 0 000000000000 01111 122 23333456889999885422100
Q ss_pred -eeee----------cCccCeEEEEEecCCCceEEEe----------cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 246 -TAMK----------VHLEPVLCLSIDESCNGGISGG----------ADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 246 -~~~~----------~h~~~v~~~~~~~~~~~~~s~s----------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
..+. ........+.+++++..++... .+++|.+.|+..... ...-... .....+
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~~I~vg---~~P~gi 375 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER--INKIELG---HEIDSI 375 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEEE---EEECEE
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE--EEEEECC---CCcCeE
Confidence 0000 0011222357887766555442 245799998865432 2111111 136789
Q ss_pred EECCCCC-EEEEEe-CCCeEEEEEccCCeEEEEe
Q 017296 305 SIRPDSK-IAATAG-WDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 305 ~~sp~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~ 336 (374)
+|+||++ +++++. .+++|.++|..+++.++++
T Consensus 376 a~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 376 NVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9999999 888888 4899999999999998887
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=8.3e-05 Score=67.14 Aligned_cols=264 Identities=9% Similarity=-0.005 Sum_probs=139.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEec----------CCCcEEEEeCcccceeeeeeeeece-----eeeEEeccCCc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAA-----HGIVSVATGPS 73 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 73 (374)
+.+.++..-..+ .++|+|++++|+.+. .+++|.+||+.+++.+.++..+... ..-..+++++
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp- 133 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA- 133 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC-
Confidence 344445433445 699999999988875 4789999999999888776543100 0112344555
Q ss_pred cccceeeeccc--cCeEEE--EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCC
Q 017296 74 IGLNKVISQGR--DGTVKC--WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (374)
Q Consensus 74 ~~~~~l~s~~~--D~~vrv--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (374)
|+++++.+.. +..+.+ +|+.+ . ..+... .| ..
T Consensus 134 -DGk~lyVan~~~~~~v~V~~iD~~t--v-----~~i~v~---~~---------------------~~------------ 169 (368)
T 1mda_H 134 -SSACLLFFLFGSSAAAGLSVPGASD--D-----QLTKSA---SC---------------------FH------------ 169 (368)
T ss_dssp -TSSCEEEEECSSSCEEEEEETTTEE--E-----EEEECS---SC---------------------CC------------
T ss_pred -CCCEEEEEccCCCCeEEEEEEchhh--c-----eEEECC---Cc---------------------eE------------
Confidence 6677776653 457888 88754 0 001000 00 00
Q ss_pred CCCCCCCCCCCCceEEEcccCCCeEEEEecCC-----CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEE
Q 017296 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT-----AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNV 224 (374)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (374)
..+.+...+ ++.+.|+.+.+.|+++ ++...... . ......... . . ..+. .+
T Consensus 170 ------~~p~g~~~~-~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~------~i~vg~~P~-----~-~---~~~~-~~ 225 (368)
T 1mda_H 170 ------IHPGAAATH-YLGSCPASLAASDLAAAPAAAGIVGAQCT-G------AQNCSSQAA-----Q-A---NYPG-ML 225 (368)
T ss_dssp ------CEEEETTEE-ECCCCTTSCEEEECCSSCCCCEECCCCSC-T------TSCBCSCCE-----E-E---TTTT-EE
T ss_pred ------EccCCCeEE-EEEcCCCCEEEEECccccccCCeEEEEee-e------eeeCCCCcc-----c-c---ccCC-EE
Confidence 001111222 2334456666667765 32211000 0 000000000 0 1 1122 23
Q ss_pred EEEecCCcEEEEeccCCCCc-eeeeec-------C---ccCeEEEEEecCCCceEEEec---------CCeEEEEEcCCC
Q 017296 225 LAGYEDGSILVWDIRNPGIP-LTAMKV-------H---LEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHS 284 (374)
Q Consensus 225 ~~gs~dg~i~iwdl~~~~~~-~~~~~~-------h---~~~v~~~~~~~~~~~~~s~s~---------D~~i~lwd~~~~ 284 (374)
+-.+. +.|.+.|+...... ...+.. + ......+.+++++..++.+.. ++.+.++|+...
T Consensus 226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~ 304 (368)
T 1mda_H 226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence 33334 88888888532111 111110 0 111222678888776665432 245669998754
Q ss_pred CCeEEEEEeeecCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 285 TGSCVIKKEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
+ .. ..+... .....++|+||++ ++++.. .+++|.++|+.+++.++++..+. ..+.+++.+
T Consensus 305 ~--vv--~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 305 Q--TS--GPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp C--EE--ECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECCC
T ss_pred e--EE--EEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEeec
Confidence 3 22 111111 1367899999998 456666 59999999999999998887543 455666654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.1e-05 Score=74.35 Aligned_cols=134 Identities=7% Similarity=0.028 Sum_probs=80.2
Q ss_pred CcEEEEeccCCCC---ceeeeec-CccCeEEEEEecCCCceEEEec----CCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 231 GSILVWDIRNPGI---PLTAMKV-HLEPVLCLSIDESCNGGISGGA----DQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 231 g~i~iwdl~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~~~s~s~----D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
..|++|++.+... .+..... |......+.+++++..++..+. ++.|.++|++........ +..+.....
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~---l~~~~~~~~ 284 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT---VQGDLDADV 284 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE---EECSSSSCE
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE---EeCCCCceE
Confidence 4599999865422 1222222 3345678889999987754332 358999998765322221 122223333
Q ss_pred EEEECCCCCEE-EEEeCC---CeEEEEEccCCeE--EEEecccCCceEEEEEeCCCCEEEEEeC-CC--cEEEecCC
Q 017296 303 GTSIRPDSKIA-ATAGWD---RRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASE-DS--TVALWELY 370 (374)
Q Consensus 303 ~~~~sp~~~~l-~s~~~d---g~v~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~-D~--~v~~W~~~ 370 (374)
.. ++++++.| +.+..+ +.|.++|+.+++. ...+..|...+. .|+|+++.|+.... |+ .|++|++.
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 33 56665554 455443 6799999987654 345555666665 89999997776554 44 57778764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-05 Score=69.67 Aligned_cols=141 Identities=10% Similarity=0.001 Sum_probs=92.3
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v 301 (374)
.++++..++.|..|+.. .. ...+..+...+..+.+++++..+++...++.|.+|+.+ .. ...+...... ....+
T Consensus 59 l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLVGRYAGKRLNSP 133 (305)
T ss_dssp EEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECEETTEECSCC
T ss_pred EEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEEeccCCCccCCC
Confidence 46677788999999873 22 34455566778899999998855555556889999875 22 1111111111 11235
Q ss_pred EEEEECCCCCEEEE----EeC-------------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC---
Q 017296 302 SGTSIRPDSKIAAT----AGW-------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED--- 361 (374)
Q Consensus 302 ~~~~~sp~~~~l~s----~~~-------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D--- 361 (374)
..++++|+|++.++ |.. .+.|..||..+++.... . +....+.++|+||++.|..+..+
T Consensus 134 ~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE-E-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE-e-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 67999999998886 332 24577777766654332 2 44567889999999977666554
Q ss_pred ---CcEEEecCC
Q 017296 362 ---STVALWELY 370 (374)
Q Consensus 362 ---~~v~~W~~~ 370 (374)
+.|+.|++.
T Consensus 212 ~~~~~i~~~~~~ 223 (305)
T 3dr2_A 212 HGSVEITAFAWR 223 (305)
T ss_dssp -CCCEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 688888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0003 Score=62.09 Aligned_cols=171 Identities=11% Similarity=0.025 Sum_probs=102.4
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.++.+..+|.. ++.......... ...... .+ ..+ .+..++ +.|..|| .+ +..+..
T Consensus 153 gt~~~~l~~~d~~-g~~~~~~~~~~~----------~~~~~~-----~d-~~g--~l~v~t--~~l~~~d-~~-g~~~~~ 209 (330)
T 3hxj_A 153 GSNDNYLYAINPD-GTEKWRFKTNDA----------ITSAAS-----IG-KDG--TIYFGS--DKVYAIN-PD-GTEKWN 209 (330)
T ss_dssp ECTTSEEEEECTT-SCEEEEEECSSC----------CCSCCE-----EC-TTC--CEEEES--SSEEEEC-TT-SCEEEE
T ss_pred EcCCCEEEEECCC-CCEeEEEecCCC----------ceeeeE-----Ec-CCC--EEEEEe--CEEEEEC-CC-CcEEEE
Confidence 4556789999988 765544432100 000000 01 122 355566 8899998 43 333333
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
.......+.++.+++++. ++.++.++.+..+|.+ +...... ........++.+.+++. |..++.+|.+..+|.
T Consensus 210 ~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~---g~~~~~~--~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 210 FYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD---GTEKWRF--KTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp ECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT---SCEEEEE--ECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred EccCCcceeceEECCCCe-EEEEcCCCeEEEECCC---CCEeEEe--eCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 333445677888887764 6677778888888642 2222221 12222234456666665 555778889999996
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+++.+..+......+.++...++|++.+ ++.+|.+++-...
T Consensus 283 -~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNL 323 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC-
T ss_pred -CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEecc
Confidence 6777766655556677777778887554 7889999987664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=6e-05 Score=67.05 Aligned_cols=140 Identities=12% Similarity=0.020 Sum_probs=87.4
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--cCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--LERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--~~~~~ 300 (374)
.+++...++.|..||.... . ...+. ....+.++.+++++..+++ +. +.|.+||.+... ........ .....
T Consensus 63 l~~~d~~~~~i~~~d~~~~-~-~~~~~-~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~--~~~~~~~~~~~~~~~ 135 (326)
T 2ghs_A 63 AWWFNILERELHELHLASG-R-KTVHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGV--LTLHAELESDLPGNR 135 (326)
T ss_dssp EEEEEGGGTEEEEEETTTT-E-EEEEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCC--EEEEECSSTTCTTEE
T ss_pred EEEEECCCCEEEEEECCCC-c-EEEEE-CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCc--EEEEeeCCCCCCCCC
Confidence 4566777889999998643 2 22232 3467899999988865554 44 458889875432 22111111 11134
Q ss_pred eEEEEECCCCCEEEEEeCC----CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 301 ISGTSIRPDSKIAATAGWD----RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
+..++++|+|++.++...+ +...||.+.+++. ..+..+....+.++|+|||+.| ++.+.++.|.+|++.
T Consensus 136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 7889999999987755422 2334444434543 3333344567899999999865 455667899999875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0018 Score=59.40 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=81.9
Q ss_pred cCCcEEEEeccCCCCceeeeecC--ccCeEEEEE--ecCCCceEEEe------cCCeEEEEEcCCCCCeEEEEEeeecC-
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVH--LEPVLCLSI--DESCNGGISGG------ADQKIVLYNLDHSTGSCVIKKEINLE- 297 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h--~~~v~~~~~--~~~~~~~~s~s------~D~~i~lwd~~~~~~~~~~~~~~~~~- 297 (374)
.+..|.+||+.+ .....++..- ......+.| +|++..++.++ .+++|.+|..+. +.......+...
T Consensus 226 ~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~ 302 (462)
T 2ece_A 226 YGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPA 302 (462)
T ss_dssp SCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECC
T ss_pred cCCEEEEEECCC-CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCC
Confidence 378999999975 3444444432 123445555 88888776555 567898887764 333222211000
Q ss_pred -----------------CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccC---CeEEEEeccc-----------C---Cc
Q 017296 298 -----------------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRK---GSALAILKYH-----------H---AT 342 (374)
Q Consensus 298 -----------------~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~---~~~~~~~~~h-----------~---~~ 342 (374)
......+.+|||+++|..+.+ .+.|.+||+.+ .+.+..+... . ..
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 134678999999999887776 68999999863 3444444322 0 13
Q ss_pred eEEEEEeCCCCEEEEEe
Q 017296 343 CNAVSFSSDCKLMASAS 359 (374)
Q Consensus 343 v~~v~~sp~~~~las~s 359 (374)
...++++|||++|..+.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 57789999999887766
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0013 Score=56.17 Aligned_cols=185 Identities=9% Similarity=0.009 Sum_probs=111.8
Q ss_pred ceEEEccc-CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 162 KYMAVAGE-QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~-~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.++..+|. .++.|++.|+++++.+..+.-.. ..+ ..-++ + . +....++.-.++.|.++|..+
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~----~~f-----geGi~---~--~---g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDD----SYF-----GEGLT---L--L---NEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCT----TCC-----EEEEE---E--E---TTEEEEEETTCSEEEEEETTT
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCC----Ccc-----eEEEE---E--e---CCEEEEEEecCCEEEEEECCC
Confidence 33444442 35799999999999877764210 000 00111 1 1 222344556789999999875
Q ss_pred CCCceeeeecC-ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec---CCCCeEEEEECCCCCEEEEE
Q 017296 241 PGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL---ERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 241 ~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~ 316 (374)
. ..+.++..- ... ..++. ++..++.+..++++.+.|.+........ .... .......+.|. ++++.+..
T Consensus 96 ~-~v~~~i~~g~~~g-~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I--~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 96 L-SNIKNFTHQMKDG-WGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKH--NVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp T-EEEEEEECCSSSC-CEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEE--ECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred C-cEEEEEECCCCCe-EEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEE--EECCCCcccccceeEEEE-CCEEEEec
Confidence 3 334445322 222 22444 4555666667889999987653321111 1111 11235677777 67665655
Q ss_pred eCCCeEEEEEccCCeEEEEecccC-------------CceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHH-------------ATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~-------------~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
..++.|.+-|..+++.+..+.-.. ...+.|+|+|+++ +++++.....|..-++.
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 567899999999999888775321 3568999999987 66777777777776653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0024 Score=62.63 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=41.3
Q ss_pred CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 318 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 318 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+|.|..||+.+++.+...+.+. ......+...+.+|+.++.|+.++.||...+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 34889999999999887776433 3334455567788889999999999998654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00099 Score=61.05 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=112.6
Q ss_pred CCCceEEEcccCCCeEEEEecCCC----ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC----
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTA----ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---- 230 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---- 230 (374)
.+.+++.+.+..+++|.+.|+.+. +....+.........+.+ +... ..+.+ .+ .+++...+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s---~Ph~---~~~~p---dG--i~Vs~~g~~~g~ 161 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS---RLHT---VHCGP---DA--IYISALGNEEGE 161 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE---EEEE---EEECS---SC--EEEEEEEETTSC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC---cccc---eeECC---Ce--EEEEcCCCcCCC
Confidence 345788888888899999999765 333333100000000000 0000 01222 22 34454444
Q ss_pred --CcEEEEeccCCCCceeeeec--CccC-eEEEEEecCCCceEEEe-------------------cCCeEEEEEcCCCCC
Q 017296 231 --GSILVWDIRNPGIPLTAMKV--HLEP-VLCLSIDESCNGGISGG-------------------ADQKIVLYNLDHSTG 286 (374)
Q Consensus 231 --g~i~iwdl~~~~~~~~~~~~--h~~~-v~~~~~~~~~~~~~s~s-------------------~D~~i~lwd~~~~~~ 286 (374)
|.|.++|.++. ..+..... .... -..+-++|+++.+++.. .+++|.+||++..
T Consensus 162 ~~g~v~vlD~~T~-~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-- 238 (462)
T 2ece_A 162 GPGGILMLDHYSF-EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-- 238 (462)
T ss_dssp SCCEEEEECTTTC-CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--
T ss_pred CCCeEEEEECCCC-eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--
Confidence 78999998753 33443331 1111 22356688888767663 3789999999753
Q ss_pred eEEEEEeeecC--CCCeEEEEE--CCCCCEEEEEe------CCCeEEEEEccCCeE--EEEe--ccc-------------
Q 017296 287 SCVIKKEINLE--RPGISGTSI--RPDSKIAATAG------WDRRVRIYNYRKGSA--LAIL--KYH------------- 339 (374)
Q Consensus 287 ~~~~~~~~~~~--~~~v~~~~~--sp~~~~l~s~~------~dg~v~iwd~~~~~~--~~~~--~~h------------- 339 (374)
+.. ..+... ......+.| +|+++++..++ .+++|.+|..+.++. .+++ ...
T Consensus 239 k~~--~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 239 KRI--HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp EEE--EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred cEe--eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 222 233321 123445555 99999987666 567898887765431 1111 110
Q ss_pred ---CCceEEEEEeCCCCEE-EEEeCCCcEEEecCCCC
Q 017296 340 ---HATCNAVSFSSDCKLM-ASASEDSTVALWELYPP 372 (374)
Q Consensus 340 ---~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~~~ 372 (374)
...+..+.+||||++| ++.-..+.|.++++.++
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 2346788999999966 45556789999998644
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.001 Score=65.14 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=38.2
Q ss_pred EEEECCCCCEEEEEeCC-----------CeEEEEEccCCeEEEEec---ccCCceEEEEEeCCCCEEEEEeC
Q 017296 303 GTSIRPDSKIAATAGWD-----------RRVRIYNYRKGSALAILK---YHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~---~h~~~v~~v~~sp~~~~las~s~ 360 (374)
+.++.|++++++.||.+ ..+.+||..+.+-. .+. .....-.+..+.|||+.++.||.
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~-~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee-ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 45677899999999865 56899999776522 222 11122233456799999999884
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.002 Score=54.57 Aligned_cols=164 Identities=14% Similarity=0.146 Sum_probs=97.1
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
+.|++.|+++++.+..+.-.. ......+. +. +....++.-.++.+.+||.++. ..+.++...
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~-----------~~FgeGit-~~-----g~~ly~ltw~~~~v~v~D~~t~-~~~~ti~~~ 126 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGK-----------RYFGEGIS-DW-----KDKIVGLTWKNGLGFVWNIRNL-RQVRSFNYD 126 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCT-----------TCCEEEEE-EE-----TTEEEEEESSSSEEEEEETTTC-CEEEEEECS
T ss_pred ceEEEEECCCCcEEEEEecCC-----------ccceeEEE-Ee-----CCEEEEEEeeCCEEEEEECccC-cEEEEEECC
Confidence 489999999999877764210 11111111 11 1123444556899999999763 445555543
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec---CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL---ERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.+. ..++.+ +..++.+..++.|.++|.++.. ..-.-.... .-..++.+.+. +|++.+..-.+..|.+.|.+
T Consensus 127 ~eG-~glt~d--g~~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 127 GEG-WGLTHN--DQYLIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp SCC-CCEEEC--SSCEEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred CCc-eEEecC--CCEEEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 322 233343 4556666557788888876433 221111111 11234556666 67666555458899999999
Q ss_pred CCeEEEEeccc------------CCceEEEEEeCCCCEEEEEe
Q 017296 329 KGSALAILKYH------------HATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 329 ~~~~~~~~~~h------------~~~v~~v~~sp~~~~las~s 359 (374)
+++.+..+... ....+.|||+|+++.|..++
T Consensus 201 tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 201 TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99988776532 13568899999887665554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00032 Score=66.52 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=52.1
Q ss_pred eEEEEECCCCCEEEEEe-CCCeEEEEEccCCe------------EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 301 ISGTSIRPDSKIAATAG-WDRRVRIYNYRKGS------------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~~~------------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.-++.|+|||++++.++ .+.+|.++|+.+.+ ....+. -......++|+|||....+.-.|+.|..|
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 34689999999876555 68999999998643 223332 22468899999999666677899999999
Q ss_pred cCC
Q 017296 368 ELY 370 (374)
Q Consensus 368 ~~~ 370 (374)
|+.
T Consensus 358 di~ 360 (595)
T 1fwx_A 358 NIE 360 (595)
T ss_dssp EHH
T ss_pred Ehh
Confidence 974
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0021 Score=56.46 Aligned_cols=134 Identities=14% Similarity=0.060 Sum_probs=83.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.+..++.++.|..||.. +..+.........+.++.+++++. ++.++ +.+..+| . ++...... ......+.
T Consensus 149 ~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~--~g~~~~~~--~~~~~~~~ 218 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD--GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-P--DGTEKWNF--YAGYWTVT 218 (330)
T ss_dssp CEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-T--TSCEEEEE--CCSSCCCS
T ss_pred EEEEEcCCCEEEEECCC--CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-C--CCcEEEEE--ccCCccee
Confidence 37778888999999986 333334444455666777777665 44555 7888887 3 22322222 22234477
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++.+.+++.+.+ ++.++.+..+|. +++.+..+......+.++.+.++|. |..++.++.|..++.
T Consensus 219 ~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 219 RPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp CCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred ceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 788888886555 667888888874 5666666654444445556655665 445666777777764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.013 Score=56.16 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=37.7
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|.+..||..+++.+..+... ..+.+..+...+.+++.++.|+.|+.||...+
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 578999999999988776532 23333333345566777899999999997654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00028 Score=63.17 Aligned_cols=117 Identities=10% Similarity=0.085 Sum_probs=77.4
Q ss_pred cCccCeEEEEEecCCCceEEEec-----CCeEEEEEcCCCCCeEEEEEeee----cCCCCeEEEEECCCCCE-EEEEe--
Q 017296 250 VHLEPVLCLSIDESCNGGISGGA-----DQKIVLYNLDHSTGSCVIKKEIN----LERPGISGTSIRPDSKI-AATAG-- 317 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~-----D~~i~lwd~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~-l~s~~-- 317 (374)
.|...+..+.+++++..+++... ++.|..||++.. +......+. .+......++|+|++.. .++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg--~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN--QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT--EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC--eEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 35568999999998764444433 678999998643 322111211 11234678999986544 45554
Q ss_pred -CCCeEEEEEccCCeEEEEecccC-----------------------------CceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 318 -WDRRVRIYNYRKGSALAILKYHH-----------------------------ATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 318 -~dg~v~iwd~~~~~~~~~~~~h~-----------------------------~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.++.|.+||+.+++....+.+|. ..++.++|+|||+.|..+..++. ++|
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~ 220 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMY 220 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEE
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEE
Confidence 68899999998887666554431 13688999999998887776664 555
Q ss_pred cC
Q 017296 368 EL 369 (374)
Q Consensus 368 ~~ 369 (374)
.+
T Consensus 221 ~~ 222 (343)
T 2qe8_A 221 RI 222 (343)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0015 Score=55.52 Aligned_cols=171 Identities=11% Similarity=0.044 Sum_probs=101.2
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+..+.+.++.|++.|+++++.+..+ -.. ......+ .+ . +....++.-.++.+.+||.++ .
T Consensus 66 ~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-----------~~FgeGi-t~--~---g~~Ly~ltw~~~~v~V~D~~T-l 126 (268)
T 3nok_A 66 HFFESTGHQGTLRQLSLESAQPVWME-RLG-----------NIFAEGL-AS--D---GERLYQLTWTEGLLFTWSGMP-P 126 (268)
T ss_dssp EEEEEETTTTEEEECCSSCSSCSEEE-ECT-----------TCCEEEE-EE--C---SSCEEEEESSSCEEEEEETTT-T
T ss_pred EEEEEcCCCCEEEEEECCCCcEEeEE-CCC-----------CcceeEE-EE--e---CCEEEEEEccCCEEEEEECCc-C
Confidence 34555566778999999999876665 210 0000011 11 1 112344466789999999875 3
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC---CCCeEEEEECCCCCEEEEEeCC
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE---RPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~~d 319 (374)
..+.++....+. ..++.+ +..++.+..++.|.++|.++.. ..-.-..... -..+..+.+. +|++.+..-.+
T Consensus 127 ~~~~ti~~~~eG-wGLt~D--g~~L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 127 QRERTTRYSGEG-WGLCYW--NGKLVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp EEEEEEECSSCC-CCEEEE--TTEEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred cEEEEEeCCCce-eEEecC--CCEEEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 445555543222 344444 3456666668889998876433 2211111111 1234556666 67665554457
Q ss_pred CeEEEEEccCCeEEEEeccc-------------CCceEEEEEeCCCC-EEEEE
Q 017296 320 RRVRIYNYRKGSALAILKYH-------------HATCNAVSFSSDCK-LMASA 358 (374)
Q Consensus 320 g~v~iwd~~~~~~~~~~~~h-------------~~~v~~v~~sp~~~-~las~ 358 (374)
..|.+-|.++++.+..+.-. ....+.||+.|+++ +++||
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999988776532 13568899999876 55554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.019 Score=55.01 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=47.6
Q ss_pred cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc-eEEEEEeC
Q 017296 272 ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSS 350 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~sp 350 (374)
.++.+..||+... +......... .+.+..+...+..+..++.|+.++.||.++++.+..++..... ..-+.+..
T Consensus 442 ~~g~l~a~D~~tG--~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~ 516 (571)
T 2ad6_A 442 EMGQIRAFDLTTG--KAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 516 (571)
T ss_dssp CCEEEEEECTTTC--CEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCeEEEEECCCC--CEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEE
Confidence 3578888887643 3333222211 1222222223456677899999999999999999887643321 12244667
Q ss_pred CCCEEE
Q 017296 351 DCKLMA 356 (374)
Q Consensus 351 ~~~~la 356 (374)
+|+.++
T Consensus 517 ~G~~yv 522 (571)
T 2ad6_A 517 KGKQYI 522 (571)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 888444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0082 Score=58.79 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce-EEEEEeCC
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC-NAVSFSSD 351 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v-~~v~~sp~ 351 (374)
+|.|.-||+.+ ++...+..... ......+...+.+++.++.|+.++.||.++++.+..++...... .-+.+..+
T Consensus 437 ~g~l~A~D~~t--G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 437 SGALLAWDPVK--QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp EEEEEEEETTT--TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred cceEEEEeCCC--CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 48899999864 44443332211 12223344456788889999999999999999998876543211 22445568
Q ss_pred CC-EEEEEe
Q 017296 352 CK-LMASAS 359 (374)
Q Consensus 352 ~~-~las~s 359 (374)
|+ +++.++
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 87 555543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0073 Score=51.58 Aligned_cols=103 Identities=8% Similarity=-0.130 Sum_probs=60.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeec--Ccc---CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec--
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKV--HLE---PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-- 296 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-- 296 (374)
++++..++.|.++|.++.. ....+.. ... .++.+.+. ++..++....++.|.+-|.+... ..-.-....
T Consensus 119 l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~--V~~~I~~~g~~ 194 (266)
T 2iwa_A 119 LYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT--LLGWILLPNLR 194 (266)
T ss_dssp EEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC--EEEEEECHHHH
T ss_pred EEEECCCCeEEEEECCCCc-EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc--EEEEEECCCcc
Confidence 4444467899999987533 2333322 112 35566666 44434455567899999886543 222111110
Q ss_pred ---------CCCCeEEEEECCCCCE-EEEEeCCCeEEEEEccCC
Q 017296 297 ---------ERPGISGTSIRPDSKI-AATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 297 ---------~~~~v~~~~~sp~~~~-l~s~~~dg~v~iwd~~~~ 330 (374)
.......++|+|+++. ++++....++..-++...
T Consensus 195 ~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 195 KKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp HHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 1134679999999765 556667788988887653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.018 Score=55.27 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce-EEEEEeCC
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC-NAVSFSSD 351 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v-~~v~~sp~ 351 (374)
+|.+.-||+.+. +...+...... ...-.+...+.++..++.|+.++.||.++|+.+..++...... .-+.|..+
T Consensus 465 ~G~l~A~D~~tG--~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~ 539 (582)
T 1flg_A 465 VGSLRAMDPVSG--KVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD 539 (582)
T ss_dssp SEEEEEECTTTC--CEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred cceEEEEECCCC--CEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence 678888888644 33333222111 1111111235577779999999999999999998887543222 22567789
Q ss_pred CC-EEEEE
Q 017296 352 CK-LMASA 358 (374)
Q Consensus 352 ~~-~las~ 358 (374)
|+ +++..
T Consensus 540 G~qYv~~~ 547 (582)
T 1flg_A 540 GEQYLGVT 547 (582)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 98 55544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0021 Score=61.02 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=83.2
Q ss_pred CcEEEEeccC--CCCceeeeecCccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCC----Ce----EEEEEeeecCCC
Q 017296 231 GSILVWDIRN--PGIPLTAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHST----GS----CVIKKEINLERP 299 (374)
Q Consensus 231 g~i~iwdl~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~----~~----~~~~~~~~~~~~ 299 (374)
+.|.+.|.++ .......+.. .....++.++|++..++. +..+++|.++|++... ++ .....+.. -..
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~ 331 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGL 331 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCS
T ss_pred CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCC
Confidence 5699999875 2221223322 235567889999987655 4568899999997321 00 00111221 124
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccC----------CeEEEEecccCCce-----EEEEEeCCCCEEEEE---eCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRK----------GSALAILKYHHATC-----NAVSFSSDCKLMASA---SED 361 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~----------~~~~~~~~~h~~~v-----~~v~~sp~~~~las~---s~D 361 (374)
+-+.++|+|+|...++.-.|+.|.+||+.+ .+.+.++.-|..+- ..+.++|||++|+++ |.|
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 678899999995455667799999999977 45667776665432 123468999998876 445
Q ss_pred Cc
Q 017296 362 ST 363 (374)
Q Consensus 362 ~~ 363 (374)
..
T Consensus 412 r~ 413 (595)
T 1fwx_A 412 RF 413 (595)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.065 Score=51.54 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=49.1
Q ss_pred cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc-eEEEEEeC
Q 017296 272 ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSS 350 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~sp 350 (374)
.+|.+.-||+.+. +.......... ..+-.+...+.++..++.|+.++.||.++|+.+..++-.... ..-+.+..
T Consensus 451 ~~G~l~A~D~~tG--~~~W~~~~~~~---~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~ 525 (599)
T 1w6s_A 451 GLGQIKAYNAITG--DYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTH 525 (599)
T ss_dssp CCEEEEEECTTTC--CEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CcCeEEEEECCCC--CEEeEecCCCC---ccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEe
Confidence 3578888888644 33333222111 111112224556777999999999999999999877644321 12255667
Q ss_pred CCC-EEEEE
Q 017296 351 DCK-LMASA 358 (374)
Q Consensus 351 ~~~-~las~ 358 (374)
+|+ ++++.
T Consensus 526 ~G~qyv~~~ 534 (599)
T 1w6s_A 526 KGTQYVAIY 534 (599)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 888 55544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.029 Score=47.02 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=95.8
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
+.|+..|+++++.+..+.-.. ...-..+. +. +....+..-.++.+.+||.++ ...+.++...
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~-----------~~fgeGi~-~~-----~~~ly~ltw~~~~v~v~D~~t-l~~~~ti~~~ 104 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPP-----------PYFGAGIV-AW-----RDRLIQLTWRNHEGFVYDLAT-LTPRARFRYP 104 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCT-----------TCCEEEEE-EE-----TTEEEEEESSSSEEEEEETTT-TEEEEEEECS
T ss_pred ceEEEEECCCCCEEEEEeCCC-----------CcceeEEE-Ee-----CCEEEEEEeeCCEEEEEECCc-CcEEEEEeCC
Confidence 589999999999877764221 00001111 11 112344456789999999875 3345555443
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC---CCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE---RPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
... ..++. ++..++.+..++.|.++|.++.. ..-.-....+ -..+..+.+. ++++.+.--.+..|.+.|.+
T Consensus 105 ~~G-wglt~--dg~~L~vSdgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~ 178 (243)
T 3mbr_X 105 GEG-WALTS--DDSHLYMSDGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA 178 (243)
T ss_dssp SCC-CEEEE--CSSCEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT
T ss_pred CCc-eEEee--CCCEEEEECCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC
Confidence 322 33443 34556666668889998876433 2211111111 1234455554 66655544457899999999
Q ss_pred CCeEEEEeccc------------C-CceEEEEEeCCCCEEEEEe
Q 017296 329 KGSALAILKYH------------H-ATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 329 ~~~~~~~~~~h------------~-~~v~~v~~sp~~~~las~s 359 (374)
+++.+..+.-. . ...+.||+.|+++.|...+
T Consensus 179 tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 179 SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99988776522 1 3568899999877554444
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.094 Score=50.42 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=37.1
Q ss_pred CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 318 WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 318 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.+|.+.-||+.+++.+...+. ...+..-.+...+.+++.++.|+.++.+|...+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 357899999999998776642 2222221223356677778999999999886653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.096 Score=50.25 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=38.0
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+|.+..||+.+++.+.....+. .+..-.....+.+++.++.|+.++.||...+.
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCC
Confidence 6889999999999887665332 22222222346678889999999999986653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.071 Score=46.37 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=57.6
Q ss_pred ecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE--Eec
Q 017296 261 DESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILK 337 (374)
Q Consensus 261 ~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~ 337 (374)
++++..+ ++-...+.|..++++.. +.......+. .......++++++|++.++....+.|.++|.. ++... .+.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDST-DKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTT-SCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 3444333 45556788999988641 1110000000 01234568999999987777778899999874 65532 233
Q ss_pred ccCCceEEEEEe---CCCCEEEEEe
Q 017296 338 YHHATCNAVSFS---SDCKLMASAS 359 (374)
Q Consensus 338 ~h~~~v~~v~~s---p~~~~las~s 359 (374)
.....+.+++|. ||++.|..++
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred cccCCceEEEEecccCCCCEEEEEC
Confidence 333578999998 8877554433
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.079 Score=44.92 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=87.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.+++-..++.|..+|+... ...............+++++++.. +++....+.|.+++++........ .......
T Consensus 50 ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~----~~~~~~P 124 (267)
T 1npe_A 50 VYWTDISEPSIGRASLHGG-EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF----DTGLVNP 124 (267)
T ss_dssp EEEEETTTTEEEEEESSSC-CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSSCSSE
T ss_pred EEEEECCCCEEEEEecCCC-CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE----ECCCCCc
Confidence 3445566788999998642 222222222356788999986444 455566789999998754322211 1112356
Q ss_pred EEEEECCCCCEEEEEeC---CCeEEEEEccCCeEEEEec-ccCCceEEEEEeCCCCE-EEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGW---DRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKL-MASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~-las~s~D~~v~~W~~~ 370 (374)
..++++|++..|..+.. .+.|..++.. ++....+. ........++++|++.. .++-...+.|..++..
T Consensus 125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 78999997655544443 3688888875 33333332 23356789999998764 4555667788888764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.037 Score=48.55 Aligned_cols=142 Identities=8% Similarity=0.058 Sum_probs=84.5
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeec--------------------CccCeEEEEEec-CCCceEEEecCCeEEEEEcC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKV--------------------HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~--------------------h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~ 282 (374)
++++..++.|..||..... +..+.. .......+++++ ++ .++.+...+.+..+|.+
T Consensus 33 l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp EEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTTEEEEECTT
T ss_pred EEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCCCEEEEeCC
Confidence 5667778888888875422 222210 113467899987 55 45656555668888764
Q ss_pred CCCCeEEEEEeee-cCCCCeEEEEECC-CCCEEEEEeC-----------------CCeEEEEEccCCeEEEEecccCCce
Q 017296 283 HSTGSCVIKKEIN-LERPGISGTSIRP-DSKIAATAGW-----------------DRRVRIYNYRKGSALAILKYHHATC 343 (374)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~s~~~-----------------dg~v~iwd~~~~~~~~~~~~h~~~v 343 (374)
..... .+..... ........+++.| +|++.++... ++.|..||..+++... +.......
T Consensus 110 ~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~p 187 (322)
T 2fp8_A 110 GGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL-LLKELHVP 187 (322)
T ss_dssp CEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE-EEEEESCC
T ss_pred CCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE-eccCCccC
Confidence 32111 1111111 1112467899999 9987765432 3678888886665332 22222355
Q ss_pred EEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 344 NAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 344 ~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
+.++|+|+|+.| ++-+.++.|..+++.
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~ 215 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLE 215 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESS
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECC
Confidence 678999999854 554667888888765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.083 Score=48.60 Aligned_cols=141 Identities=7% Similarity=0.061 Sum_probs=85.3
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC----eEEEEEcCCCCC-eEEEEEeeec
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ----KIVLYNLDHSTG-SCVIKKEINL 296 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~----~i~lwd~~~~~~-~~~~~~~~~~ 296 (374)
.|+.+...+.|+.+|+... .+..+.........+++++++..++.+.. .+ .+...+.+..-. ...+ ..
T Consensus 151 ~Lyv~d~~~~I~~id~~~~--~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l-~~--- 224 (430)
T 3tc9_A 151 HLYLVGEQHPTRLIDFEKE--YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITEL-TK--- 224 (430)
T ss_dssp EEEEEEBTEEEEEEETTTT--EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEE-EE---
T ss_pred eEEEEeCCCcEEEEECCCC--EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeee-cc---
Confidence 3555444478888998642 23344344556888999998885554443 22 233333322111 0111 11
Q ss_pred CCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecc-cCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 297 ERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 297 ~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
......++++| ++.++++-..++.|..++...+........ .......++|+|+|+ ++++-.....|..++..
T Consensus 225 -~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 225 -GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp -CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred -CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 12356788999 677667666789999999976654222221 224577899999999 55666677888887653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.092 Score=46.80 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=81.5
Q ss_pred cCCcEEEEeccCCCCceeee--ecC-----ccCeEEEEEec--CCC--ceEEEec--CCeEEEEEcCCCCCeEEEEEeee
Q 017296 229 EDGSILVWDIRNPGIPLTAM--KVH-----LEPVLCLSIDE--SCN--GGISGGA--DQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~--~~h-----~~~v~~~~~~~--~~~--~~~s~s~--D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
.+|.|.++|+.++......+ .+. .-....+.+.+ ++. .++.... +.+|.+|+++.............
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987432222222 221 12344555533 332 2233333 67899999876655544444443
Q ss_pred cCC-CCeEEEEECCCCCEEEEEeC---C------------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEE
Q 017296 296 LER-PGISGTSIRPDSKIAATAGW---D------------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASA 358 (374)
Q Consensus 296 ~~~-~~v~~~~~sp~~~~l~s~~~---d------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~ 358 (374)
... .....+.+.++|++.++..- | ..=++|-+..++ +..+...-...+.++|+||++.| ++-
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEe
Confidence 322 35778999999988776541 1 223344343333 33333334567899999999855 444
Q ss_pred eCCCcEEEecCC
Q 017296 359 SEDSTVALWELY 370 (374)
Q Consensus 359 s~D~~v~~W~~~ 370 (374)
+..+.|..|++.
T Consensus 240 t~~~~I~~~~~~ 251 (355)
T 3sre_A 240 LLAHKIHVYEKH 251 (355)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCeEEEEEEC
Confidence 667888888875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.13 Score=43.66 Aligned_cols=138 Identities=6% Similarity=-0.121 Sum_probs=86.3
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccC-eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.+++.+.+|.|+.+|+++... +..+ -.... -..++++++. .....-.++.+.++|.++. +.. .++.....
T Consensus 67 Ly~stG~~g~v~~iD~~Tgkv-~~~~-l~~~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl--~~~--~ti~~~~e-- 137 (268)
T 3nok_A 67 FFESTGHQGTLRQLSLESAQP-VWME-RLGNIFAEGLASDGER-LYQLTWTEGLLFTWSGMPP--QRE--RTTRYSGE-- 137 (268)
T ss_dssp EEEEETTTTEEEECCSSCSSC-SEEE-ECTTCCEEEEEECSSC-EEEEESSSCEEEEEETTTT--EEE--EEEECSSC--
T ss_pred EEEEcCCCCEEEEEECCCCcE-EeEE-CCCCcceeEEEEeCCE-EEEEEccCCEEEEEECCcC--cEE--EEEeCCCc--
Confidence 466777888999999987443 3333 21211 1235565543 2344557899999998643 222 23332222
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc--cC---CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY--HH---ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--h~---~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
...+++|++.|+.+..+++|.++|..+.+.+..+.- +. ..++.+.|. +|++.|....+..|.+-|...
T Consensus 138 -GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~T 210 (268)
T 3nok_A 138 -GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPAT 210 (268)
T ss_dssp -CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTT
T ss_pred -eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 123346777776666789999999999888776643 22 255778886 887777666677777766543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.23 Score=43.40 Aligned_cols=111 Identities=11% Similarity=0.071 Sum_probs=72.6
Q ss_pred CeEEEEEecCCCceE-EEecCCeEEEEEcCCCC-CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC----------CCe
Q 017296 254 PVLCLSIDESCNGGI-SGGADQKIVLYNLDHST-GSCVIKKEINLERPGISGTSIRPDSKIAATAGW----------DRR 321 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~----------dg~ 321 (374)
....+++++++..++ +-...+.|..++++... +....... .. +...+++.++|++.++... .+.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~--gP~gi~~d~~G~l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IP--NPGNIKRNADGHFWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CS--SEEEEEECTTSCEEEEEEEETTSSTTSCEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CC--CCCCeEECCCCCEEEEecCcccccccCCCccE
Confidence 345688998887554 44667899999987421 11111111 11 2678999999987766544 467
Q ss_pred EEEEEccCCeEEEEeccc----CCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 322 VRIYNYRKGSALAILKYH----HATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
|..+|. +++.+..+... ...+..+++ .++++.++....+.|..+++.
T Consensus 262 v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 262 GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 888886 47777666543 235667776 477777777778888888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.45 Score=46.25 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=41.8
Q ss_pred EEEEeCCCCEEEEecC-CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc-cc-----CeEEEEecCC
Q 017296 23 DVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RD-----GTVKCWDIEN 95 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D-----~~vrvwd~~~ 95 (374)
++++..++.+++.|+. +..+.+||..+.+....-..+..-....++.. + +++.++.|| .+ ..+.+||+.+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~--dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-S--DGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-T--TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-c--CCeEEEEeCcccCCcccccceEeCCCC
Confidence 4677788999999984 46899999877653221111111011111221 1 456777777 44 4688888876
Q ss_pred C
Q 017296 96 G 96 (374)
Q Consensus 96 ~ 96 (374)
+
T Consensus 324 ~ 324 (656)
T 1k3i_A 324 K 324 (656)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.27 Score=42.93 Aligned_cols=143 Identities=8% Similarity=0.004 Sum_probs=84.6
Q ss_pred EEEEEecCCcEEEEeccCC---CCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 223 NVLAGYEDGSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
.+++-..++.|..+|+... ......+.........+++++.. ..+++-...+.|.+.+++....... .....
T Consensus 44 ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~----~~~~~ 119 (316)
T 1ijq_A 44 IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL----FRENG 119 (316)
T ss_dssp EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE----EECTT
T ss_pred EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE----EECCC
Confidence 3455566788998988641 11122222223455788898644 3345556788999999875322211 11122
Q ss_pred CCeEEEEECCCCCEEEEEeCC--CeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 299 PGISGTSIRPDSKIAATAGWD--RRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d--g~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
.....+++.|.+..|.-+... +.|...++. ++....+ ...-...+.+++.|++..| ++-+..+.|...++.
T Consensus 120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 457889999976665545443 688888874 4444333 2234567899999876654 444556678777763
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.11 Score=43.92 Aligned_cols=139 Identities=10% Similarity=0.012 Sum_probs=83.6
Q ss_pred EEEEEecCC--cEEEEeccCCCCceeeeecCccC-eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDG--SILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.+.+.+.+| .|+.+|+++. .....+...... -..++++.+. .....-.++.+.++|.++.. . ..++.....
T Consensus 55 LyestG~~g~S~v~~vD~~Tg-kv~~~~~l~~~~FgeGit~~g~~-ly~ltw~~~~v~v~D~~t~~--~--~~ti~~~~e 128 (262)
T 3nol_A 55 FYESTGLNGRSSIRKVDIESG-KTLQQIELGKRYFGEGISDWKDK-IVGLTWKNGLGFVWNIRNLR--Q--VRSFNYDGE 128 (262)
T ss_dssp EEEEEEETTEEEEEEECTTTC-CEEEEEECCTTCCEEEEEEETTE-EEEEESSSSEEEEEETTTCC--E--EEEEECSSC
T ss_pred EEEECCCCCCceEEEEECCCC-cEEEEEecCCccceeEEEEeCCE-EEEEEeeCCEEEEEECccCc--E--EEEEECCCC
Confidence 355555555 8999999864 334444332222 1235555442 23345568899999986543 2 223332221
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc----C-CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH----H-ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h----~-~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
...+++|++.|+.+..+++|.++|..+.+.+..+.-. + ..++.+.|. +|+..|..-.+..|.+-|...
T Consensus 129 ---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 129 ---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp ---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred ---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence 2334466776665555788999999998887765432 2 456678886 787777666677777766543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.8 Score=45.56 Aligned_cols=138 Identities=9% Similarity=0.105 Sum_probs=87.2
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeee---------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMK---------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.+-.|+.++.|..||..... +..+. .....|.++..++++..+..|..++.+.++|.+... ......
T Consensus 369 ~lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~~~ 444 (795)
T 4a2l_A 369 NLWIGTNDGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENFNQ 444 (795)
T ss_dssp CEEEEESSSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEECT
T ss_pred CEEEEECCCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEeec
Confidence 36778888889999976432 22221 123578899988877536778887889999875432 211110
Q ss_pred --eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc-------cCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 294 --INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY-------HHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 294 --~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
.......|.++...+++++.+.+ . +-+.+||..+++.. .+.. +...|.++...++|++.+... +| +
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l 519 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-L 519 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-E
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEeC-Cc-e
Confidence 00123468899999988876644 4 45778998776543 2221 235788999989998665444 44 5
Q ss_pred EEecC
Q 017296 365 ALWEL 369 (374)
Q Consensus 365 ~~W~~ 369 (374)
..|+.
T Consensus 520 ~~~~~ 524 (795)
T 4a2l_A 520 SVFKQ 524 (795)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 55553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.41 Score=42.31 Aligned_cols=140 Identities=15% Similarity=0.304 Sum_probs=86.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCC--------CceEEEec--CCeEEEEEcCCCCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC--------NGGISGGA--DQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~--------~~~~s~s~--D~~i~lwd~~~~~~~~~~~~ 292 (374)
.++.....+.+.+||+. +..++.+.. ..++.+.+-+.. ..+++.-. +++|++|+++..++......
T Consensus 42 ~ii~t~k~~gL~Vydl~--G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLD--GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEETT--SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred EEEEEcCCCCEEEEcCC--CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 35556677899999993 455555532 455555553321 12344444 68999998865444322111
Q ss_pred e----eecCCCCeEEEEE--CCC-CC-EEEEEeCCCeEEEEEcc-------CCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 293 E----INLERPGISGTSI--RPD-SK-IAATAGWDRRVRIYNYR-------KGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 293 ~----~~~~~~~v~~~~~--sp~-~~-~l~s~~~dg~v~iwd~~-------~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
. +......+..+|+ +|. ++ ++.....+|.+..|++. +.+.+.++.- ...+-.++..+....|..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 1111144667777 774 44 67778889999999983 2345556653 346777888888888888
Q ss_pred EeCCCcEEEecC
Q 017296 358 ASEDSTVALWEL 369 (374)
Q Consensus 358 ~s~D~~v~~W~~ 369 (374)
+-+|.- ||.+
T Consensus 197 ~eEd~G--Iw~~ 206 (355)
T 3amr_A 197 AEEDEA--IWKF 206 (355)
T ss_dssp EETTTE--EEEE
T ss_pred ecccce--EEEE
Confidence 888855 5655
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.093 Score=52.07 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=73.0
Q ss_pred cEEEEeccCC-CCceeeeecCccCeEEEEEecCCCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 232 SILVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 232 ~i~iwdl~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
+|+++|+... ......+. .....+.+++++..++..+.| ..|.++++.+....-.+..+.. ......++.
T Consensus 202 ~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~ 277 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH-NPLFSAFMY 277 (751)
T ss_dssp EEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC-CTTCEEEEE
T ss_pred EEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC-CCceEEEEE
Confidence 5999999764 21111111 113356788888877776665 3577777765432211211111 123456789
Q ss_pred ECCCCCEEEEEeC---CCeEEEEEccCC--eE-EEEe-cccCCceEEEEEeCCCCEEEEEeCC--CcEEEe
Q 017296 306 IRPDSKIAATAGW---DRRVRIYNYRKG--SA-LAIL-KYHHATCNAVSFSSDCKLMASASED--STVALW 367 (374)
Q Consensus 306 ~sp~~~~l~s~~~---dg~v~iwd~~~~--~~-~~~~-~~h~~~v~~v~~sp~~~~las~s~D--~~v~~W 367 (374)
+|||+++|+.... ...|.++|+.++ +. +..+ ....+...++.|+..+.+++.+..| +.-+||
T Consensus 278 ~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 278 KAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEE
Confidence 9999998875553 345788888765 22 1333 3344555666665544455555544 344444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.02 Score=56.85 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=69.3
Q ss_pred CeEEEEEe-cCCCceEEEec-----CCeEEEEEcCCC-CCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC-----Ce
Q 017296 254 PVLCLSID-ESCNGGISGGA-----DQKIVLYNLDHS-TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----RR 321 (374)
Q Consensus 254 ~v~~~~~~-~~~~~~~s~s~-----D~~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----g~ 321 (374)
.+....++ |++..++-+.. ..+|+++|+++. .. . ...+.. ...+++|+||++.|+-...| ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l-~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--I-ADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--C-CCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--C-CccccC---ceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 56778899 99987764322 235999998764 31 1 001110 12357899999887766654 25
Q ss_pred EEEEEccCCe--EEEEec-ccCCceEEEEEeCCCCEEEEEe---CCCcEEEecCCCC
Q 017296 322 VRIYNYRKGS--ALAILK-YHHATCNAVSFSSDCKLMASAS---EDSTVALWELYPP 372 (374)
Q Consensus 322 v~iwd~~~~~--~~~~~~-~h~~~v~~v~~sp~~~~las~s---~D~~v~~W~~~~~ 372 (374)
|.++++.++. ....+. .+......+.|+|||++|+..+ ....|.++++..+
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 7778886653 122222 2234566789999999887654 2345666776543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.56 Score=41.10 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=83.9
Q ss_pred CCcEEEEecc---CCCCc-eeeeecC-----------ccCeEEEEEecCCCceEEEecC-CeEEEEEcCCCCCeEEEEEe
Q 017296 230 DGSILVWDIR---NPGIP-LTAMKVH-----------LEPVLCLSIDESCNGGISGGAD-QKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 230 dg~i~iwdl~---~~~~~-~~~~~~h-----------~~~v~~~~~~~~~~~~~s~s~D-~~i~lwd~~~~~~~~~~~~~ 293 (374)
+..|..||+. +.... ...+... ......+++|++++..++++.- +.|...+.+... ...+...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eeeeeec
Confidence 6789999997 43221 1122211 1247889999999999988888 887777665431 1111111
Q ss_pred e--ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE--EEEec--cc---CCceEE-EEEeCCCCE-EEEEeCCC
Q 017296 294 I--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILK--YH---HATCNA-VSFSSDCKL-MASASEDS 362 (374)
Q Consensus 294 ~--~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~--~h---~~~v~~-v~~sp~~~~-las~s~D~ 362 (374)
. .....+.+.++++|++++|+.....|.+..+|+.+... +. +. +. -..... ++--.+|+. |++.+..+
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~ 256 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPY 256 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTE
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEcCCCC
Confidence 1 12234577999999999888787799999999875443 22 11 22 112333 233357775 67777666
Q ss_pred cEEEec
Q 017296 363 TVALWE 368 (374)
Q Consensus 363 ~v~~W~ 368 (374)
.+.+-+
T Consensus 257 ~~~l~S 262 (334)
T 2p9w_A 257 AISFRS 262 (334)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 655543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.06 E-value=0.5 Score=41.35 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=84.8
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+.+-...+.|..+++.........+.........+++++. +..+++-...+.|.+.+++........ ........
T Consensus 50 yw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~----~~~~~~P~ 125 (318)
T 3sov_A 50 YWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF----WQELDQPR 125 (318)
T ss_dssp EEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSSCSSEE
T ss_pred EEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEE----eCCCCCcc
Confidence 3444556778888875432111222222345667888864 444456667789999998754322221 12223567
Q ss_pred EEEECCCCCEEEEEeC--CCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 303 GTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
.+++.|.+..|.-+.+ .+.|...++. |+....+ ...-...+.++|+|++..| ++=+..+.|..++++
T Consensus 126 giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 126 AIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp EEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 8999997666665553 5788888875 3333333 2334567899999966644 444566778777764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.68 Score=41.72 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=84.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+++-...+.|..+++... .....+.........+++++.. ..+++-...+.|.+.+++........ ........
T Consensus 131 y~~D~~~~~I~r~~~~g~-~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~----~~~l~~P~ 205 (386)
T 3v65_B 131 FWSDVTLDRILRANLNGS-NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL----WQSLEKPR 205 (386)
T ss_dssp EEEETTTTEEEEEETTSC-CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE----CSSCSCEE
T ss_pred EEEeCCCCcEEEEecCCC-CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee----cCCCCCCc
Confidence 445556778888887642 2122222223345678888643 33456666788998888754322221 11223467
Q ss_pred EEEECCCCCEEEEEeC-C-CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE-EEEEeCCCcEEEecCC
Q 017296 303 GTSIRPDSKIAATAGW-D-RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL-MASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~-d-g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-las~s~D~~v~~W~~~ 370 (374)
.+++.|.+..|.-+.+ . +.|...++............-...+.|+|+|++.. .++-+..+.|..+++.
T Consensus 206 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 206 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred EEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 8999997766654443 4 68888887543322223333456789999986654 4554566778777753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=1.5 Score=43.65 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=89.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec-------CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE-ee
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV-------HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EI 294 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~-~~ 294 (374)
.+-.|+.++.|..|+..... +..+.. ....|.++..++++. +..|..++.+..||..... ..... ..
T Consensus 322 ~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~ 396 (795)
T 4a2l_A 322 GMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR--FTSYTLQE 396 (795)
T ss_dssp CEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC--EEEECCC-
T ss_pred CEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc--EEEEecCC
Confidence 36778888899999875422 221211 234689999988765 6778888889999875332 21111 00
Q ss_pred -----ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec-----ccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 295 -----NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-----YHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 295 -----~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
......|.+++..+++++|-.|+.++-+.+||..+++.. .+. .+...|.++...++|++.+... +| +
T Consensus 397 ~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l 473 (795)
T 4a2l_A 397 DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-L 473 (795)
T ss_dssp -----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-E
T ss_pred CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-e
Confidence 012346888999889984555777778999998876643 332 1345789999888888655443 44 5
Q ss_pred EEecC
Q 017296 365 ALWEL 369 (374)
Q Consensus 365 ~~W~~ 369 (374)
.+|+.
T Consensus 474 ~~~~~ 478 (795)
T 4a2l_A 474 VRFNP 478 (795)
T ss_dssp EEEET
T ss_pred eEEeC
Confidence 55654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.45 Score=42.22 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=84.2
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+.+-...+.|..+++.... ..............+++++.. ..+++-...+.|.+.+++........ ........
T Consensus 88 y~~D~~~~~I~r~~~~g~~-~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~----~~~l~~P~ 162 (349)
T 3v64_C 88 FWSDVTLDRILRANLNGSN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL----WQSLEKPR 162 (349)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CTTCSCEE
T ss_pred EEEeccCCceEEEecCCCC-ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE----eCCCCCcc
Confidence 4445566788888876422 122222223445778898644 44456666789999998754322221 11223467
Q ss_pred EEEECCCCCEEEEEe-CC-CeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 303 GTSIRPDSKIAATAG-WD-RRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
.+++.|.+..|.-+. .. +.|...++.. .....+ ...-...+.++|+|++..| ++-+..+.|..++++
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 899999666555444 34 7888888753 333333 2234567899999866644 444556777777653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.71 E-value=1 Score=39.82 Aligned_cols=192 Identities=14% Similarity=0.185 Sum_probs=108.5
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce--EEEE-Eec--CCcEEEEecc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV--NVLA-GYE--DGSILVWDIR 239 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-gs~--dg~i~iwdl~ 239 (374)
+++....+-+.++|+ +++.+..+.... ..++-+. ..|.. .+.. .+++ .-. +++|.+|++.
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~g~----------~nnVD~r-~~~~l---~g~~~dla~as~R~~~~n~l~vf~iD 107 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNTGK----------LNNVDIR-YDFPL---NGKKVDIAAASNRSEGKNTIEIYAID 107 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECCSC----------EEEEEEE-EEEEE---TTEEEEEEEEEECSTTCCEEEEEEEC
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccCCC----------cccEEEe-ccccc---CCceEeEEEEeCCCCCCCeEEEEEEC
Confidence 333444568999999 888887775210 0111110 01110 0111 1222 333 5899999773
Q ss_pred CCCCceeeeec------Cc-cCeEEEEE--ecC-CC-ceEEEecCCeEEEEEcCCC-CC--eEEEEEeeecCCCCeEEEE
Q 017296 240 NPGIPLTAMKV------HL-EPVLCLSI--DES-CN-GGISGGADQKIVLYNLDHS-TG--SCVIKKEINLERPGISGTS 305 (374)
Q Consensus 240 ~~~~~~~~~~~------h~-~~v~~~~~--~~~-~~-~~~s~s~D~~i~lwd~~~~-~~--~~~~~~~~~~~~~~v~~~~ 305 (374)
-...++..+.. .. ..+..+++ ++. +. +++....+|.+..|++... .+ ...+..++... ..+-.+.
T Consensus 108 p~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Egcv 186 (355)
T 3amr_A 108 GKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMA 186 (355)
T ss_dssp TTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEE
T ss_pred CCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEE
Confidence 11223443321 11 34455566 653 32 4677788899999998432 22 22223333332 3577888
Q ss_pred ECCCCCEEEEEeCCCeEEEEEcc-----CCeEEEEec-ccC-CceEEEEE--eCCCC-E-EEEEeCCCcEEEecCCCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYR-----KGSALAILK-YHH-ATCNAVSF--SSDCK-L-MASASEDSTVALWELYPP 372 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~-~h~-~~v~~v~~--sp~~~-~-las~s~D~~v~~W~~~~~ 372 (374)
+.+....|..+-+|.-|..++.+ +++.+..+. +|. ..+..|++ .++++ + |+|+-.+.+.-+|+...+
T Consensus 187 vDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 187 ADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp EETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence 88888889889999777777754 344555542 333 36888887 56666 4 455546778999988644
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.67 E-value=1.1 Score=40.54 Aligned_cols=140 Identities=14% Similarity=0.075 Sum_probs=80.7
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
+..+.|+..|+.... ...+......+..+++++....+ ++-...+.|..++++.....................+++
T Consensus 89 ~~~~~I~~i~l~~~~--~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 89 TNRHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp EETTEEEEECTTSCS--CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred eccceeEEEccCCcc--eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence 345789999986432 23333345678889999754444 455567889989886421000001111112235678999
Q ss_pred CCC-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe--CCCcEEEecC
Q 017296 307 RPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS--EDSTVALWEL 369 (374)
Q Consensus 307 sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s--~D~~v~~W~~ 369 (374)
.+. +.+..+-...+.|.+.++........+...-.....|++.|.+.+|.-+. ..+.|...++
T Consensus 167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 984 55555666678999998865443333333445688999999655444333 2355655544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.66 E-value=1.2 Score=40.31 Aligned_cols=143 Identities=6% Similarity=-0.010 Sum_probs=84.5
Q ss_pred EEEEecCCcEEEEeccCCC---CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 224 VLAGYEDGSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~---~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
+.+-...+.|..+++.... .....+.........++++.. +..+++-...+.|.+.+++........ .....
T Consensus 127 ywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~----~~~~~ 202 (400)
T 3p5b_L 127 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----RENGS 202 (400)
T ss_dssp EEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE----ECSSC
T ss_pred EEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE----eCCCC
Confidence 4444556778888875311 112222223456778999874 444456667789999988754322221 12223
Q ss_pred CeEEEEECCCCCEEEEEeC--CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEE-eCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA-SEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~~ 370 (374)
....+++.|.+.+|.-+.+ .+.|...++............-...+.|++.|++..|.-+ +....|...+++
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 4788999997666655543 3788888885433332333334678899999877655443 556677776653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.41 Score=43.96 Aligned_cols=140 Identities=8% Similarity=0.008 Sum_probs=81.4
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC----C-eEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD----Q-KIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D----~-~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
|+.+...+.|+.+|+... .+..+.........+++++++. ++.+... . .+...+............ ..
T Consensus 155 Lyv~D~~~~I~~id~~~g--~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~----~~ 227 (433)
T 4hw6_A 155 LYWVGQRDAFRHVDFVNQ--YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC----NA 227 (433)
T ss_dssp EEEECBTSCEEEEETTTT--EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE----EC
T ss_pred EEEEeCCCCEEEEECCCC--EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc----cc
Confidence 444433388999998542 2344434455688999999988 4444332 1 233332221110001111 11
Q ss_pred CCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecc--cCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 299 PGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
.....++++| ++.+.++-..++.|+.+|..+++....+.. ....-..++|+|+|+ +.++-.....|+.+++.
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 2355688999 677666666778999999877765222211 122334699999998 55666667888887654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.5 Score=41.38 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=86.7
Q ss_pred EEEecCCcEEEEeccCCCCceeeeec----Cc--cCeEEEEE---ecCCCceEEEe-------------cCCeEEEEEcC
Q 017296 225 LAGYEDGSILVWDIRNPGIPLTAMKV----HL--EPVLCLSI---DESCNGGISGG-------------ADQKIVLYNLD 282 (374)
Q Consensus 225 ~~gs~dg~i~iwdl~~~~~~~~~~~~----h~--~~v~~~~~---~~~~~~~~s~s-------------~D~~i~lwd~~ 282 (374)
++.-..++|..||..........+.+ .. ..+..|.+ |+.+..++... .+..+..+|+.
T Consensus 29 vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 29 QSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLP 108 (334)
T ss_dssp EEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESS
T ss_pred EEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCC
Confidence 33346788999987532211112211 01 13467888 67765544332 26789999987
Q ss_pred ---CCCCeEEEEEeee----c-------CCCCeEEEEECCCCCEEEEEeCC-CeEEEEEccCCeEEEEec-cc-----CC
Q 017296 283 ---HSTGSCVIKKEIN----L-------ERPGISGTSIRPDSKIAATAGWD-RRVRIYNYRKGSALAILK-YH-----HA 341 (374)
Q Consensus 283 ---~~~~~~~~~~~~~----~-------~~~~v~~~~~sp~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~-~h-----~~ 341 (374)
+....... .+. . .......+++.++|+.-++++.- +.|...+.. ++.+..+. .. .-
T Consensus 109 ~~~tg~~~~~~--dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~ 185 (334)
T 2p9w_A 109 LSENSKPVWSV--NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRP 185 (334)
T ss_dssp CCTTCCCSEEE--ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCC
T ss_pred cCCCCCEEEEe--cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCccccc
Confidence 33322221 111 0 11247789999999988888877 777766653 44333322 11 12
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 342 TCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 342 ~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
..+.|+++|+|+.|+....++.+..+|+..|
T Consensus 186 G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 186 GYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp SCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 3678999999997776655998988887543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.37 E-value=1 Score=37.59 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=80.5
Q ss_pred EEEEecC--CcEEEEeccCCCCceeeeecCccC-eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYED--GSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~d--g~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+.+...+ ..|+.+|+++. ............ -..++++.+. .....-.++.+.++|.++.. . ..++.....
T Consensus 34 yestG~~g~S~v~~vD~~tg-kv~~~~~l~~~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~~tl~--~--~~ti~~~~~- 106 (243)
T 3mbr_X 34 YESTGETGRSSVRKVDLETG-RILQRAEVPPPYFGAGIVAWRDR-LIQLTWRNHEGFVYDLATLT--P--RARFRYPGE- 106 (243)
T ss_dssp EEEECCTTSCEEEEEETTTC-CEEEEEECCTTCCEEEEEEETTE-EEEEESSSSEEEEEETTTTE--E--EEEEECSSC-
T ss_pred EEECCCCCCceEEEEECCCC-CEEEEEeCCCCcceeEEEEeCCE-EEEEEeeCCEEEEEECCcCc--E--EEEEeCCCC-
Confidence 3444443 58999999864 334433322221 1234454432 23445678999999986432 2 223333222
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-----CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-----ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-----~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
...++++++.|+.+..+++|.++|..+.+.+.++.-.. ..++.+.+. +|+..|....+..|.+-|...
T Consensus 107 --Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 107 --GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp --CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred --ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence 23344566666555668899999999988877665321 355667765 777666665566777666543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=1.3 Score=38.42 Aligned_cols=135 Identities=12% Similarity=0.049 Sum_probs=77.7
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCC---CCeEEEEEeeecCCCCeEEEE
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHS---TGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~~~~~v~~~~ 305 (374)
.+.|+..|+..... .. +.........+.+++.... +++-...+.|..++++.. +..... ..........++
T Consensus 9 ~~~I~~i~~~~~~~-~~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~---~~~~~~~p~gla 83 (316)
T 1ijq_A 9 RHEVRKMTLDRSEY-TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---ISRDIQAPDGLA 83 (316)
T ss_dssp BSSEEEEETTSCCC-EE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE---ECSSCSCCCEEE
T ss_pred CCeEEEEECCCcce-Ee-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE---EeCCCCCcCEEE
Confidence 45789999875322 22 2233456788999875444 455566789999988641 111111 111113456889
Q ss_pred ECCCCC-EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC--CcEEEecC
Q 017296 306 IRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED--STVALWEL 369 (374)
Q Consensus 306 ~sp~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D--~~v~~W~~ 369 (374)
+.+.++ +.++-..++.|.+.++........+.........+++.|++..|.-+... +.|...++
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 987544 44555678899999986433322233334577899999966644433332 45655543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.25 E-value=1.2 Score=37.58 Aligned_cols=185 Identities=11% Similarity=0.089 Sum_probs=102.9
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
+.++...++.|...|+. ++.+..+.-.. +. +..+ ++ +. ..+. .+++.-.++.+.++++.....
T Consensus 41 L~aV~d~~~~I~~ld~~-g~v~~~i~l~g------~~-D~EG--Ia---~~---~~g~-~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 41 LFSTINKPAAIVEMTTN-GDLIRTIPLDF------VK-DLET--IE---YI---GDNQ-FVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp EEEEEETTEEEEEEETT-CCEEEEEECSS------CS-SEEE--EE---EC---STTE-EEEEETTTTEEEEEEECTTCC
T ss_pred EEEEECCCCeEEEEeCC-CCEEEEEecCC------CC-ChHH--eE---Ee---CCCE-EEEEECCCCcEEEEEcCCCCe
Confidence 44445557788888887 77666664211 10 0011 11 11 1222 234434557788887754332
Q ss_pred --ceeeee------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC--CCeEEEEEe--e--ecCCCCeEEEEECCC
Q 017296 244 --PLTAMK------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TGSCVIKKE--I--NLERPGISGTSIRPD 309 (374)
Q Consensus 244 --~~~~~~------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~--~~~~~~~~~--~--~~~~~~v~~~~~sp~ 309 (374)
...... ........+++++....++++.......+|.++.. ......... + ......+.+++|+|.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 111111 12345688999998878888777666677766521 111111111 0 112235789999996
Q ss_pred CC-EEEEEeCCCeEEEEEccCCeEEEEe--c-cc------CCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 310 SK-IAATAGWDRRVRIYNYRKGSALAIL--K-YH------HATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 310 ~~-~l~s~~~dg~v~iwd~~~~~~~~~~--~-~h------~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.. +++.....+.+..+|.+ ++.+..+ . +. ..+.-.|+|.++|.+.++ |+.+.++.+
T Consensus 184 tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 44 55666677889899875 5555433 2 21 136788999999986665 666654444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.57 Score=41.63 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=60.6
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee---cCCCCeEEEEECCC---CCEE-EEEeCC-----C
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LERPGISGTSIRPD---SKIA-ATAGWD-----R 320 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~---~~~l-~s~~~d-----g 320 (374)
.....++|++++. ++.+..++.|.+++ + . .......+. ....+...++|+|+ ++.| ++-..+ +
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~-g--~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR-E-G--RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE-T-T--EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE-C-C--CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3456788999887 45556679999987 3 2 211111111 12346889999998 4444 443332 6
Q ss_pred eEEEEEccCCe-----E-EEEec---ccCCceEEEEEeCCCCEEEEEe
Q 017296 321 RVRIYNYRKGS-----A-LAILK---YHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 321 ~v~iwd~~~~~-----~-~~~~~---~h~~~v~~v~~sp~~~~las~s 359 (374)
.|..|+...++ . +..+. +.......++|.|||.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 78888876431 1 22233 1112346899999998777654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=2.2 Score=42.38 Aligned_cols=141 Identities=11% Similarity=0.014 Sum_probs=79.9
Q ss_pred EecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
-+....|+..++.... ...+......+..|++++.. ..+++-...+.|+.++++...........+.........++
T Consensus 400 ~an~~~Ir~i~l~~~~--~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 400 FTNRHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp EECBSSEEEECTTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred cccccceeEeeccCCc--ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 3445678888886432 23333345667889998743 34456666788999988642110000111121223466899
Q ss_pred ECCCCCE-EEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC--CCcEEEecC
Q 017296 306 IRPDSKI-AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE--DSTVALWEL 369 (374)
Q Consensus 306 ~sp~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--D~~v~~W~~ 369 (374)
+.+.++. .++-...++|.+.++........+...-.....|++.|.+.+|.-+.+ ...|...++
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 9987754 455566789999998644433333334456889999997554433322 245555443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.7 Score=36.53 Aligned_cols=118 Identities=11% Similarity=0.129 Sum_probs=73.8
Q ss_pred eecCccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
+.+-...+..++++++...+++ ...++.|...|+. +.......+.. ....-.+++.++++++++.-.++.+.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3344567888999987665554 5557777777765 33222211221 23467888999998877766778899998
Q ss_pred ccCCeE---EEEec-c-----cCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 327 YRKGSA---LAILK-Y-----HHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 327 ~~~~~~---~~~~~-~-----h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+..... +.... . .-...-.++|.|++..|..+.+.....+|.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~ 149 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV 149 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence 865432 22221 1 1124578999999876666666555566554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=94.62 E-value=1.9 Score=37.16 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=65.2
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC-C-eEEEEEccCCe
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-R-RVRIYNYRKGS 331 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-g-~v~iwd~~~~~ 331 (374)
....+++++++..+++....+.|..||.+.. ... .... ......++++|+++++++.... + .|..+|..+++
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~--~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQI--HATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEE--EEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEE--EEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 3456778777765555557788888876532 111 1111 2347789999999976655443 2 46667777776
Q ss_pred EEEEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 332 ALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 332 ~~~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...... ........++..+++..+++-+.++.|..++.
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence 432221 11233455555566666666556777766664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=94.61 E-value=1.7 Score=36.38 Aligned_cols=142 Identities=12% Similarity=-0.052 Sum_probs=82.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.+++-...+.|..+++... ...............+++++++..++.+.. .+.|..++++....... . .....
T Consensus 93 lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-~---~~~~~ 167 (267)
T 1npe_A 93 IFWTDSQLDRIEVAKMDGT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-A---QDNLG 167 (267)
T ss_dssp EEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-E---CTTCS
T ss_pred EEEEECCCCEEEEEEcCCC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-E---ECCCC
Confidence 3455566788999998532 211122222245688999986444444333 36888888865432211 1 11223
Q ss_pred CeEEEEECCCCCEE-EEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 300 GISGTSIRPDSKIA-ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 300 ~v~~~~~sp~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
....++++|+++.| ++-...++|.++|.........+. .......++.. ++.++++....+.|..++...
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence 46789999987665 445556899999986544333333 22344566653 344555555567888777643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.56 E-value=2.4 Score=42.10 Aligned_cols=142 Identities=6% Similarity=-0.015 Sum_probs=83.6
Q ss_pred EEEEecCCcEEEEeccCCC---CceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 224 VLAGYEDGSILVWDIRNPG---IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
+++-...+.|+.+++.... .....+.........|+++..+. .+++-...+.|.+.+++......+. .....
T Consensus 439 Y~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~----~~~l~ 514 (791)
T 3m0c_C 439 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----RENGS 514 (791)
T ss_dssp EEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE----ECTTC
T ss_pred EEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEE----eCCCC
Confidence 4445556778888775311 11222222345567899987653 4456667889999998754322221 12223
Q ss_pred CeEEEEECCCCCEEEEEeC--CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~ 369 (374)
....+++.|...+|.-+.+ .+.|.+.++........+...-.....|++.+.+..| ++=.....|...++
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 4789999998666655543 3789988885443333333334678899999766544 44344556666655
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.46 E-value=1.9 Score=39.40 Aligned_cols=143 Identities=8% Similarity=0.044 Sum_probs=84.9
Q ss_pred EEecCCcEEEEeccCCCCceeeeec-CccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeE----EEEEeee----
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSC----VIKKEIN---- 295 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~----~~~~~~~---- 295 (374)
+-..++.|+.+|..........+.. ....-..+++++++..+ ++-...+.|..++++..++.. .+.....
T Consensus 245 ~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~ 324 (433)
T 4hw6_A 245 TRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGW 324 (433)
T ss_dssp CBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCC
T ss_pred EECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCcc
Confidence 3345677888887532210111111 11223469999998744 555567899998876433221 1111100
Q ss_pred -------cCCCCeEEEEE---------CCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc------------------CC
Q 017296 296 -------LERPGISGTSI---------RPDSKIAATAGWDRRVRIYNYRKGSALAILKYH------------------HA 341 (374)
Q Consensus 296 -------~~~~~v~~~~~---------sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h------------------~~ 341 (374)
..-..-..++| .+++.+.++-...++|+.++. +++.. ++.+. -.
T Consensus 325 ~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~ 402 (433)
T 4hw6_A 325 VDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFN 402 (433)
T ss_dssp BCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCS
T ss_pred CCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeC
Confidence 01123566899 777877777777889999985 56433 33221 13
Q ss_pred ceEEEEEe-CCCCEEEEEeCCCcEEEecCC
Q 017296 342 TCNAVSFS-SDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 342 ~v~~v~~s-p~~~~las~s~D~~v~~W~~~ 370 (374)
....|++. ++|.++++=.....|+..+++
T Consensus 403 ~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 403 HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 47889999 678877777778888887764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.10 E-value=2.9 Score=36.91 Aligned_cols=112 Identities=10% Similarity=-0.015 Sum_probs=65.6
Q ss_pred ccCeEEEEEecCCCc-eEEEecC-CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE-eCCCeEEEEEcc
Q 017296 252 LEPVLCLSIDESCNG-GISGGAD-QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA-GWDRRVRIYNYR 328 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~-~~s~s~D-~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-~~dg~v~iwd~~ 328 (374)
......++++|.... +.+-... +.|...+++....... ..........++|+|+++.|.-+ ...++|..+|+.
T Consensus 158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES----CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE----EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 345577888874443 3444444 7788888765322111 11112346789999876665544 456889999986
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.......+.........+++ .++.+.++-...+.|...+
T Consensus 234 G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 234 GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 43333333333445677777 4555666656666666655
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.95 E-value=1.3 Score=40.14 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=52.9
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCe------------EEEEecc------cCCceEEEEEeCC---CCEEEEE
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGS------------ALAILKY------HHATCNAVSFSSD---CKLMASA 358 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~------------~~~~~~~------h~~~v~~v~~sp~---~~~las~ 358 (374)
.+..+..+|+|.+||..+ +.+|.|-.+-.+. +.+.+.- ....|..+.|||- +..|+.-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 467799999999999775 6799998876321 1122221 2467999999994 4578888
Q ss_pred eCCCcEEEecCCC
Q 017296 359 SEDSTVALWELYP 371 (374)
Q Consensus 359 s~D~~v~~W~~~~ 371 (374)
-.|++||+||+..
T Consensus 146 tsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 146 KEDDTITMFDILN 158 (452)
T ss_dssp ETTSCEEEEETTC
T ss_pred ecCCEEEEEEccc
Confidence 8999999999964
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.32 Score=47.75 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=77.1
Q ss_pred EEEecCCcEEEEeccCC---CCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 225 LAGYEDGSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 225 ~~gs~dg~i~iwdl~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++-...+.|+.+++... ......+.........|+++... ..+++-...+.|.+.+++..... .+ +......
T Consensus 422 ~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l---~~~~~~~ 497 (699)
T 1n7d_A 422 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL---FREQGSK 497 (699)
T ss_dssp ECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EE---CCCSSCC
T ss_pred EEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EE---EeCCCCC
Confidence 33445678888887531 11111111112234567787433 33445556788999988643211 11 1111223
Q ss_pred eEEEEECCCCCEEEEEeC--CCeEEEEEccCCeEEEEec-ccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 301 ISGTSIRPDSKIAATAGW--DRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
...+++.|.+.+|+-+.+ .++|.++++. +.....+. ..-...+.|+|+|++. +.++-+..+.|..+++.
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 567899997665554443 2688887764 33232332 2234567899998755 55555666778877763
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.80 E-value=3.6 Score=36.90 Aligned_cols=140 Identities=9% Similarity=-0.026 Sum_probs=83.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecC-CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGAD-QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
.+++-...+.|.+.++.. ......+.........++++|....+ ++-... +.|...+++........ ......
T Consensus 173 lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~~~~ 247 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA----DTHLFW 247 (386)
T ss_dssp EEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSC
T ss_pred EEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE----ECCCCC
Confidence 345556677888888753 22222233334567889999765444 444444 78888888754322221 111234
Q ss_pred eEEEEECCCCCEEE-EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 301 ISGTSIRPDSKIAA-TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 301 v~~~~~sp~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
...++|+|+++.|. +-...+.|..+|+........+.........+++ .++.++++-...+.|...+
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 67899998766554 4445688999998643333333333445677787 4556666666677777666
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=1.2 Score=39.59 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=59.6
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee---ecCCCCeEEEEECCC----CCEEEEEeC---C---
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPGISGTSIRPD----SKIAATAGW---D--- 319 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~----~~~l~s~~~---d--- 319 (374)
.....|++++++. ++.+..++.|++++.+ +. .....+ .....+...++|+|+ +.+.++-.. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~---G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPS---GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSS---CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCC---Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 3456788888876 5555667999988632 22 111111 112346889999997 444444332 3
Q ss_pred -CeEEEEEccCC-------eEE-EEecc-cCCceEEEEEeCCCCEEEEEe
Q 017296 320 -RRVRIYNYRKG-------SAL-AILKY-HHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 320 -g~v~iwd~~~~-------~~~-~~~~~-h~~~v~~v~~sp~~~~las~s 359 (374)
..|..|+.... +.+ ..+.. .......++|.|||.+.++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 67888887543 111 12221 112346789999999777754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.70 E-value=2.7 Score=38.32 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=82.8
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeec-CccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeE----EEEEeee--
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSC----VIKKEIN-- 295 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~-h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~----~~~~~~~-- 295 (374)
+++-..++.|..||+..... ...... .......+++++++.. +++-...+.|..++.+..++.. .+.....
T Consensus 241 yv~d~~~~~V~~~~~~~~~~-~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~ 319 (430)
T 3tc9_A 241 YFNSWNAGQVFRYDFTTQET-TPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAK 319 (430)
T ss_dssp EEEETTTTEEEEEETTTTEE-EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCB
T ss_pred EEEECCCCEEEEEECCCCcE-EEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCC
Confidence 44445667888888753211 111111 1234678999999984 4555677899998876543321 1111100
Q ss_pred c---------CCCCeE-EEEEC--------CCCCEEEEEeCCCeEEEEEccCCeEEEEeccc------------------
Q 017296 296 L---------ERPGIS-GTSIR--------PDSKIAATAGWDRRVRIYNYRKGSALAILKYH------------------ 339 (374)
Q Consensus 296 ~---------~~~~v~-~~~~s--------p~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h------------------ 339 (374)
. .-..-. .+++. +++.+.++-...+.|+.++. +++.. ++.+.
T Consensus 320 g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~ 397 (430)
T 3tc9_A 320 DWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEAR 397 (430)
T ss_dssp CCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCB
T ss_pred CCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcE
Confidence 0 001122 45553 44666666666788999883 56533 33221
Q ss_pred CCceEEEEEeC-CCCEEEEEeCCCcEEEecCC
Q 017296 340 HATCNAVSFSS-DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 340 ~~~v~~v~~sp-~~~~las~s~D~~v~~W~~~ 370 (374)
-.....|++.| +|.++++-.....|+..+.+
T Consensus 398 ~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 398 FNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred eCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 12578999999 57777777777888887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.75 E-value=5.6 Score=36.13 Aligned_cols=135 Identities=11% Similarity=0.150 Sum_probs=84.6
Q ss_pred cCCcEEEEeccCCCCceeeeecC----ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC-C---------eEEEEEee
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHST-G---------SCVIKKEI 294 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~-~---------~~~~~~~~ 294 (374)
.++.||.-++.... ..+.++.. ...+..+..+|++..++.. .+.+|.+-.+.... . .......+
T Consensus 39 ~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEc
Confidence 35788888876322 34444332 3367789999999866555 56678887776211 0 01111111
Q ss_pred ec----CCCCeEEEEECCC---CCEEEEEeCCCeEEEEEccCC--eEEEEec---------ccCCceEEEEEeCCCCE--
Q 017296 295 NL----ERPGISGTSIRPD---SKIAATAGWDRRVRIYNYRKG--SALAILK---------YHHATCNAVSFSSDCKL-- 354 (374)
Q Consensus 295 ~~----~~~~v~~~~~sp~---~~~l~s~~~dg~v~iwd~~~~--~~~~~~~---------~h~~~v~~v~~sp~~~~-- 354 (374)
.. ....|..+.|||- +..|+.=..|++||+||+... ++. .+. .....|.+++|.+++-.
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLY 195 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLY 195 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEE
Confidence 11 2457999999994 557888889999999999752 222 222 23357889999998774
Q ss_pred EEEEeCCCcEEE
Q 017296 355 MASASEDSTVAL 366 (374)
Q Consensus 355 las~s~D~~v~~ 366 (374)
+++.++.|-|+-
T Consensus 196 vl~~t~~GDIYA 207 (452)
T 3pbp_A 196 CLNTTEGGDIFA 207 (452)
T ss_dssp EEECTTSCEEEE
T ss_pred EEecCCCCCEEE
Confidence 444557777654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.56 E-value=6.6 Score=36.50 Aligned_cols=139 Identities=9% Similarity=0.051 Sum_probs=80.3
Q ss_pred EEEE-ecCCcEEEEeccCCCCceeeeec----CccCeEEEEE-------ecCCCceEEEecCC-------eEEEEEcCCC
Q 017296 224 VLAG-YEDGSILVWDIRNPGIPLTAMKV----HLEPVLCLSI-------DESCNGGISGGADQ-------KIVLYNLDHS 284 (374)
Q Consensus 224 ~~~g-s~dg~i~iwdl~~~~~~~~~~~~----h~~~v~~~~~-------~~~~~~~~s~s~D~-------~i~lwd~~~~ 284 (374)
|+.+ ...+.|++.|++.. .+..+.. .......++| ++++..++.+...+ .|.+.+.+.
T Consensus 154 Lyv~~~~~~~i~~ID~~~~--~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~- 230 (496)
T 3kya_A 154 LYICYDGHKAIQLIDLKNR--MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA- 230 (496)
T ss_dssp EEEEEETEEEEEEEETTTT--EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT-
T ss_pred EEEEECCCCeEEEEECCCC--EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC-
Confidence 4444 33467888888642 2333321 2235788999 98888666555443 244554222
Q ss_pred CCeE------EEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEcc-------CCeE-----------EEEe-c-
Q 017296 285 TGSC------VIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYR-------KGSA-----------LAIL-K- 337 (374)
Q Consensus 285 ~~~~------~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~-------~~~~-----------~~~~-~- 337 (374)
.+.. ...... .....++++|+ +.++++-..++.|..+|+. ++.. +..+ .
T Consensus 231 ~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~ 306 (496)
T 3kya_A 231 DGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI 306 (496)
T ss_dssp TSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC
T ss_pred CCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec
Confidence 1111 111122 13457889995 5555666678899999997 4543 1121 1
Q ss_pred ccCCceEEEEEeCCCCE-EEEEeCCCcEEEecC
Q 017296 338 YHHATCNAVSFSSDCKL-MASASEDSTVALWEL 369 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~-las~s~D~~v~~W~~ 369 (374)
........++|+|+|++ .++=+....|+.++.
T Consensus 307 ~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 307 ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 12234678999999994 555566777777553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=3 Score=36.93 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=68.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee---cCccCeEEEEEecC---CCce-EEEec---C----CeEEEEEcCCCCCeE-
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDES---CNGG-ISGGA---D----QKIVLYNLDHSTGSC- 288 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~---~h~~~v~~~~~~~~---~~~~-~s~s~---D----~~i~lwd~~~~~~~~- 288 (374)
++.+..+|.|+++|.. ....+..+. ........|+++|+ ...+ ++-+. + +.|..|+.+......
T Consensus 42 l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 120 (354)
T 3a9g_A 42 YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK 120 (354)
T ss_dssp EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence 5555666888888732 111121111 12345788999986 3334 33332 3 567777765432111
Q ss_pred ---EEEEeee-cCCCCeEEEEECCCCCEEEEEeC-------------CCeEEEEEccCCe--------EEEEe-cccCCc
Q 017296 289 ---VIKKEIN-LERPGISGTSIRPDSKIAATAGW-------------DRRVRIYNYRKGS--------ALAIL-KYHHAT 342 (374)
Q Consensus 289 ---~~~~~~~-~~~~~v~~~~~sp~~~~l~s~~~-------------dg~v~iwd~~~~~--------~~~~~-~~h~~~ 342 (374)
.+...+. ...+....++|.|||.+.++.+. .|+|..++.. ++ ....+ .+|. .
T Consensus 121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~~i~a~G~r-n 198 (354)
T 3a9g_A 121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNSPIWSYGHR-N 198 (354)
T ss_dssp EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTCCEEEECCS-C
T ss_pred ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCCcEEEEccC-C
Confidence 1111111 11223467999999987776543 2566666653 32 01111 2333 4
Q ss_pred eEEEEEeC-CCCEEEEE
Q 017296 343 CNAVSFSS-DCKLMASA 358 (374)
Q Consensus 343 v~~v~~sp-~~~~las~ 358 (374)
...++|.| +|++.++-
T Consensus 199 p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 199 PQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCEEEECTTTCCEEEEE
T ss_pred cceEEEeCCCCCEEEEe
Confidence 56799999 67766553
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=92.39 E-value=5.1 Score=34.80 Aligned_cols=141 Identities=14% Similarity=0.031 Sum_probs=81.5
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
+++-...+.|.++++.. ................+++++....++-+. ..+.|...+++........ ...-..-
T Consensus 94 y~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----~~~l~~P 168 (318)
T 3sov_A 94 YWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII----NSEIYWP 168 (318)
T ss_dssp EEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE----CSSCSCE
T ss_pred EEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE----ECCCCCc
Confidence 44445667888888753 222222223445678899997544444333 3578888888654322211 1112345
Q ss_pred EEEEECCCCCEEE-EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAA-TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
..++|+|+++.|. +-...+.|..+|+..........+.......+++. .+.++.+-...+.|...+..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKY 237 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECC
Confidence 7899999766555 44456889999986433222223233455677764 34555666666777776654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.76 E-value=5.3 Score=36.74 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=58.3
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee------cCCCCeEEEEECCC----CCEEEEEeC-----
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN------LERPGISGTSIRPD----SKIAATAGW----- 318 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~----~~~l~s~~~----- 318 (374)
....|+|++++..+++....+.|++++... +.......+. ....++..++|+|+ +.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~--g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPES--GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCC--CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 455788999987555543334688876532 2222111111 12356789999995 444444332
Q ss_pred -------CCeEEEEEccCC-------eEEE-Eecc-cCCceEEEEEeCCCCEEEEEeC
Q 017296 319 -------DRRVRIYNYRKG-------SALA-ILKY-HHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 319 -------dg~v~iwd~~~~-------~~~~-~~~~-h~~~v~~v~~sp~~~~las~s~ 360 (374)
...|..|+.... +.+. .+.. .......|+|.|||++.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1121 2221 1234788999999997776543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=10 Score=36.50 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=81.0
Q ss_pred EEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 225 ~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
.+-...+.|..+++.........+.........+++|..+. .+++-...+.|.+.++++.....+.. ........
T Consensus 56 ~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~ 131 (619)
T 3s94_A 56 WSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRA 131 (619)
T ss_dssp EEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCC
T ss_pred EEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCce
Confidence 33344566777776532111222222335678899998444 44566678899999997643332221 12234568
Q ss_pred EEECCCCCEEEEEeC--CCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGW--DRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
+++.|...+|.-+.+ .+.|...++. |+...++ ...-...+.|++.++++.| ++=+..+.|...++.
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 999997666655554 4677777764 3333333 3344578899999875544 444556667666653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=91.33 E-value=3.1 Score=40.77 Aligned_cols=140 Identities=11% Similarity=-0.040 Sum_probs=76.0
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe-cC-CeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-AD-QKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s-~D-~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
+++-...+.|.++++.. ......+.........+++++....++.+. .. +.|...+++........ .......
T Consensus 468 Y~tD~~~~~I~v~d~dg-~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~----~~~l~~P 542 (699)
T 1n7d_A 468 YWTDSVLGTVSVADTKG-VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----TENIQWP 542 (699)
T ss_dssp EECCTTTSCEEEEBSSS-CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES----CSSCSSC
T ss_pred EEEeccCCeEEEEecCC-CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE----eCCCCCc
Confidence 44445678899998753 222222222234556788887544444332 23 67888777643222111 1111235
Q ss_pred EEEEECCCCCEE-EEEeCCCeEEEEEccCCeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 302 SGTSIRPDSKIA-ATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 302 ~~~~~sp~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
..++|+|+++.| ++-...++|.++++........+.. .......|++..+ .++++....+.|..++.
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 679999975544 4555678899999864332222221 1123344555443 45666666777877764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=9.3 Score=36.71 Aligned_cols=128 Identities=13% Similarity=-0.030 Sum_probs=71.9
Q ss_pred EEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
.-.+.+.|+..|+.........+.........+.+++....+ ++-...+.|..++++....... ...........+
T Consensus 13 ~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~---v~~~~~~~P~Gl 89 (619)
T 3s94_A 13 LYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN---VVVSGLLSPDGL 89 (619)
T ss_dssp EEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE---EECSSCSCEEEE
T ss_pred EEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE---EEeCCCCCcCeE
Confidence 344577899998864321122222334567788998755444 4555578898888865321111 112222357789
Q ss_pred EECCCCC-EEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEE
Q 017296 305 SIRPDSK-IAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 305 ~~sp~~~-~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las 357 (374)
++.+.++ +..+-...+.|.+.++.. +...++ ...-.....|++.|.+.+|.-
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~Iavdp~~g~ly~ 143 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYW 143 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCceEEEecCCCeEEE
Confidence 9999555 445555678999999864 333333 234456778899987554433
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.77 E-value=14 Score=36.52 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=83.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee----ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM----KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
.+-.|+.++.|..||.... ....+ ......|.++..++++. +..|..++.+..+|.+. ++...........
T Consensus 375 ~lWigt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~--~~~~~~~~~~~~~ 449 (781)
T 3v9f_A 375 KLWIGTDGGGINVFENGKR--VAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRL--KKFQIIELEKNEL 449 (781)
T ss_dssp CEEEEEBSSCEEEEETTEE--EEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSS--CEEEECCSTTTCC
T ss_pred CEEEEeCCCcEEEEECCCC--eEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCC--CcEEEeccCCCCC
Confidence 3677887788999987531 11111 12345688888887764 56677777788887643 2222111001123
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc-----CCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH-----HATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
..|.++...+++.+.+. +. +-+.++|..+++........ ...|.++...++|++.+....+| +..++.
T Consensus 450 ~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~ 522 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTP 522 (781)
T ss_dssp CCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECT
T ss_pred CeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeC
Confidence 46888888988876664 44 56888998776543222111 35788998888888655443344 444543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=3.2 Score=34.08 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=59.9
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE-E---EEEeeecC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC-V---IKKEINLE-RPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~-~---~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
..+..++|+|++.. ... .+|. ||..+..+... . ....+... -....++.|.|++.+.++ .||.|..++-
T Consensus 41 ~~~~~laf~P~G~L-YaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGEL-YGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCE-EEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccE-EEE-eCCe--EEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 36668999998764 444 6664 55544322100 0 00111110 012467899999988777 5799988865
Q ss_pred cCC-eE------EEEecccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 328 RKG-SA------LAILKYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 328 ~~~-~~------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
-+. .. -..-+.--..+..|.|.|+|.+-|.. |+.+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 321 11 11112222567999999999977766 6664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=89.56 E-value=10 Score=33.36 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=61.1
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee----ecCCCCeEEEEECCC----CCEEEEE--eCCCeE
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI----NLERPGISGTSIRPD----SKIAATA--GWDRRV 322 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~----~~~l~s~--~~dg~v 322 (374)
.....|+|.+++..+++--..|.|++++.+. +.......+ .....+...++|+|+ +.+.++- ..++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 4456788988887655554589999887543 222211111 122456889999995 4443432 245667
Q ss_pred EEEEccCC----------eEE-EEecc-cCCceEEEEEeCCCCEEEEEe
Q 017296 323 RIYNYRKG----------SAL-AILKY-HHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 323 ~iwd~~~~----------~~~-~~~~~-h~~~v~~v~~sp~~~~las~s 359 (374)
..|.+..+ +.+ ..+.. .......|+|.|||.+.++.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 77766541 112 12321 112346689999999777754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.15 E-value=18 Score=35.59 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=84.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeee----------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-E
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMK----------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-K 291 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-~ 291 (374)
.+-.|+.++.|..|+..... +..+. .....|.++..++++. +..|..++.+..+|.... .... .
T Consensus 325 ~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~--~~~~~~ 399 (781)
T 3v9f_A 325 NIWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR--VAIYNK 399 (781)
T ss_dssp CEEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE--EEECC-
T ss_pred CEEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC--eEEEcc
Confidence 36678888889999876432 22221 1235689998888764 677777777888876421 1110 0
Q ss_pred EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc---cCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 292 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY---HHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.........|.++...+++.+.+ |+.++-+..+|..+++.. .+.. ....|.++...++|++.+.. .. -+..++
T Consensus 400 ~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~ 475 (781)
T 3v9f_A 400 ENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGT-HA-GVFVID 475 (781)
T ss_dssp ----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEE-TT-EEEEEE
T ss_pred CCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEE-CC-ceEEEe
Confidence 00011234688888888887666 666677888888766533 3321 34678888888888755543 34 455665
Q ss_pred C
Q 017296 369 L 369 (374)
Q Consensus 369 ~ 369 (374)
.
T Consensus 476 ~ 476 (781)
T 3v9f_A 476 L 476 (781)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.12 E-value=17 Score=33.84 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=90.0
Q ss_pred EEEEEecCCcEEEEecc-------CCCC-----c-----eee-ee-cCccCeEEEEEecCCCc-eEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIR-------NPGI-----P-----LTA-MK-VHLEPVLCLSIDESCNG-GISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~-------~~~~-----~-----~~~-~~-~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~ 282 (374)
++++-..++.|..+|+. .... + +.. +. +.......++|++++.. +++-...+.|+.++.+
T Consensus 261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 45566778889999986 3221 0 111 11 12334678999999984 4555677899998876
Q ss_pred CCCCeE----EEEEeee--c---------CCCCeE-EEEEC-------CCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 283 HSTGSC----VIKKEIN--L---------ERPGIS-GTSIR-------PDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 283 ~~~~~~----~~~~~~~--~---------~~~~v~-~~~~s-------p~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
...+.. .+..... . .-..-. .++.. +++.+.++=..+.+|+.++ .++. +.++.+.
T Consensus 341 g~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~ 418 (496)
T 3kya_A 341 EIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGR 418 (496)
T ss_dssp TTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEES
T ss_pred CCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecc
Confidence 544321 1111100 0 001123 45554 4566667666788999998 4554 4344321
Q ss_pred ------------------------CCceEEEEEeCC-CCEEEEEeCCCcEEEecCCCC
Q 017296 340 ------------------------HATCNAVSFSSD-CKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 340 ------------------------~~~v~~v~~sp~-~~~las~s~D~~v~~W~~~~~ 372 (374)
-.....|++.++ |.++++=+....||.+++...
T Consensus 419 g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 419 GASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred cccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 134678999996 887777778889999887654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.99 E-value=5.6 Score=35.12 Aligned_cols=107 Identities=9% Similarity=0.073 Sum_probs=57.4
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-EEee-ecCCCCeEEEEECCC----CCEEEEEeC-------CC
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-KKEI-NLERPGISGTSIRPD----SKIAATAGW-------DR 320 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-~~~~-~~~~~~v~~~~~sp~----~~~l~s~~~-------dg 320 (374)
....|+|++++..++.+...|.|++++.+........ .... .....+...++|+|+ +.+.++-.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 4567889998873455566789998875321000000 0001 112346789999995 444444332 23
Q ss_pred eEEEEEccCC--e--EEEE----ecc---cCCceEEEEEeCCCCEEEEEeC
Q 017296 321 RVRIYNYRKG--S--ALAI----LKY---HHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 321 ~v~iwd~~~~--~--~~~~----~~~---h~~~v~~v~~sp~~~~las~s~ 360 (374)
.|..|++... + ...+ +.. .......++|.|||.+.++.+.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 5766766432 1 1111 111 1112457999999987666543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.93 E-value=12 Score=32.97 Aligned_cols=133 Identities=10% Similarity=0.054 Sum_probs=67.3
Q ss_pred EEEEecCCcEEEEeccCCC-Cceeee----ecCccCeEEEEEecC----CCceEEEec-------CCeEEEEEcCCCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPG-IPLTAM----KVHLEPVLCLSIDES----CNGGISGGA-------DQKIVLYNLDHSTGS 287 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~-~~~~~~----~~h~~~v~~~~~~~~----~~~~~s~s~-------D~~i~lwd~~~~~~~ 287 (374)
++.+...|.|++++..... .++..+ .........++++|+ +...++-+. ...|..++++.....
T Consensus 32 l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~ 111 (353)
T 2g8s_A 32 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK 111 (353)
T ss_dssp EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB
T ss_pred EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC
Confidence 4455567888888742100 011111 112335678999874 333333222 235666666543222
Q ss_pred EEEEE----eee---cCCCCeEEEEECCCCCEEEEEeC-------------CCeEEEEEccCCe-------------EEE
Q 017296 288 CVIKK----EIN---LERPGISGTSIRPDSKIAATAGW-------------DRRVRIYNYRKGS-------------ALA 334 (374)
Q Consensus 288 ~~~~~----~~~---~~~~~v~~~~~sp~~~~l~s~~~-------------dg~v~iwd~~~~~-------------~~~ 334 (374)
..... .+. ...+....++|.|||.+.++.+. .|+|..+|.. ++ ...
T Consensus 112 ~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~~npf~~~~~~~~~ 190 (353)
T 2g8s_A 112 VTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPDDNPFIKESGVRAE 190 (353)
T ss_dssp EEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCTTCTTTTSTTSCTT
T ss_pred CCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCCCCCCcCCCCCCcc
Confidence 11111 111 11122457999999977666543 2567777764 22 111
Q ss_pred EecccCCceEEEEEeC-CCCEEEE
Q 017296 335 ILKYHHATCNAVSFSS-DCKLMAS 357 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp-~~~~las 357 (374)
.+..-......++|.| +|++.++
T Consensus 191 i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 191 IWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp EEEECCSEEEEEEEETTTTEEEEE
T ss_pred EEEEcCcCccceEEECCCCCEEEE
Confidence 2221223577899999 6775554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=87.80 E-value=16 Score=33.42 Aligned_cols=119 Identities=22% Similarity=0.201 Sum_probs=64.3
Q ss_pred ccCeEEEEEecC---CCce-EEEec------------CCeEEEEEcCCCCCeE-----EEEEeeecCCCCeEEEEECCCC
Q 017296 252 LEPVLCLSIDES---CNGG-ISGGA------------DQKIVLYNLDHSTGSC-----VIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 252 ~~~v~~~~~~~~---~~~~-~s~s~------------D~~i~lwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
...+..|+++|+ ...+ ++-+. ...|..++++...... ++........+....++|.|||
T Consensus 76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG 155 (454)
T 1cru_A 76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ 155 (454)
T ss_dssp SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence 345778999984 3333 33322 2356666654332221 1111111223457889999999
Q ss_pred CEEEEEeCC--------------------------------CeEEEEEccCCe-----------EEEEecccCCceEEEE
Q 017296 311 KIAATAGWD--------------------------------RRVRIYNYRKGS-----------ALAILKYHHATCNAVS 347 (374)
Q Consensus 311 ~~l~s~~~d--------------------------------g~v~iwd~~~~~-----------~~~~~~~h~~~v~~v~ 347 (374)
.+.++.+.. |+|...+.. ++ ....+..-......++
T Consensus 156 ~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~RNp~gla 234 (454)
T 1cru_A 156 KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHRNPQGLA 234 (454)
T ss_dssp CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCSEEEEEE
T ss_pred eEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCCCcceEE
Confidence 987765532 445555442 33 1222322224577899
Q ss_pred EeCCCCEEEE-EeCCCcEEEecCCC
Q 017296 348 FSSDCKLMAS-ASEDSTVALWELYP 371 (374)
Q Consensus 348 ~sp~~~~las-~s~D~~v~~W~~~~ 371 (374)
|.|+|++.++ .+.|+.-+|.-+.+
T Consensus 235 ~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 235 FTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp ECTTSCEEEEEECSSSCEEEEECCT
T ss_pred ECCCCCEEEEecCCCCCeEEEEecC
Confidence 9999885554 46666666655443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=87.74 E-value=14 Score=34.01 Aligned_cols=109 Identities=8% Similarity=0.041 Sum_probs=60.3
Q ss_pred CeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCC-eEEE-EEe-ee-----cCCCCeEEEEECCC----CCEEEEEeC--
Q 017296 254 PVLCLSIDESCN-GGISGGADQKIVLYNLDHSTG-SCVI-KKE-IN-----LERPGISGTSIRPD----SKIAATAGW-- 318 (374)
Q Consensus 254 ~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~-~~~~-~~~-~~-----~~~~~v~~~~~sp~----~~~l~s~~~-- 318 (374)
....|+|.|++. .++.+...|.|++++.+.... .... ... .. ....++..++|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 445678888874 356667889999997543210 1111 000 10 11357889999996 444444332
Q ss_pred C----------CeEEEEEccC----------CeEEEEec--ccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 319 D----------RRVRIYNYRK----------GSALAILK--YHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 319 d----------g~v~iwd~~~----------~~~~~~~~--~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
+ ..|..|.+.. .+.+..+. ........|+|.|||++.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1455566542 12232322 1122467899999999777766443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=21 Score=34.35 Aligned_cols=137 Identities=9% Similarity=-0.027 Sum_probs=79.8
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
+..+.|+..|+...................++|++....+ ++-..++.|..++++........ .........+++
T Consensus 12 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~----~~g~~~P~GlAv 87 (628)
T 4a0p_A 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV----EFGLDYPEGMAV 87 (628)
T ss_dssp EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----CSSCSCCCEEEE
T ss_pred EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE----eCCCCCcceEEE
Confidence 3678899999975332111111123467789999754444 56667889999988754322221 111124567899
Q ss_pred CCCCCEE-EEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEE-eCCCcEEEec
Q 017296 307 RPDSKIA-ATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASA-SEDSTVALWE 368 (374)
Q Consensus 307 sp~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~-s~D~~v~~W~ 368 (374)
.+.++.| .+-...+.|.+.++........+...-.....|++.|...+| +|- +..+.|...+
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 8765544 555567899999985433222232344567899999854444 442 2234444443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=15 Score=32.54 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCcEEEEeccCCCCcee---eeecC-ccCeEEEEEecCCCceEEEec---C------------CeEEEEEcCCCCCeEEE
Q 017296 230 DGSILVWDIRNPGIPLT---AMKVH-LEPVLCLSIDESCNGGISGGA---D------------QKIVLYNLDHSTGSCVI 290 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~---~~~~h-~~~v~~~~~~~~~~~~~s~s~---D------------~~i~lwd~~~~~~~~~~ 290 (374)
+.+|.+|++...+.... .+.+. ....+.+.+++++...++... | ..=++|-++..+.+..
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~- 216 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV- 216 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE-
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe-
Confidence 57888988865333222 22221 245788888888764444331 1 2233444433322211
Q ss_pred EEeeecCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEccC-CeE--EEEecccCCceEEEEEeC-CCCEEEEEeCC
Q 017296 291 KKEINLERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRK-GSA--LAILKYHHATCNAVSFSS-DCKLMASASED 361 (374)
Q Consensus 291 ~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~-~~~--~~~~~~h~~~v~~v~~sp-~~~~las~s~D 361 (374)
...+ ...+.++||||+++|..+. ..++|..|++.. ++. ...+ .-....-.+++.+ +|.+.+++..+
T Consensus 217 ~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 217 AEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred ecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 1111 3467899999998776554 578999999863 332 1233 2245667788888 58877766544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.93 E-value=16 Score=32.23 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEec-CCcEEEEeccCCCC-ceeee----ecCccCeEEEEEecC----CCceE--EEecCCeEEEEEcCCCC------
Q 017296 224 VLAGYE-DGSILVWDIRNPGI-PLTAM----KVHLEPVLCLSIDES----CNGGI--SGGADQKIVLYNLDHST------ 285 (374)
Q Consensus 224 ~~~gs~-dg~i~iwdl~~~~~-~~~~~----~~h~~~v~~~~~~~~----~~~~~--s~s~D~~i~lwd~~~~~------ 285 (374)
++.+.. .|.|++++...... .+..+ .........|+++|+ +...+ +...++.|.-|.++...
T Consensus 45 llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~ 124 (347)
T 3das_A 45 LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQL 124 (347)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCB
T ss_pred EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccC
Confidence 444444 78888887543211 11111 122456788999874 32222 22345677777665411
Q ss_pred --CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-------------CCeEEEEEccCCe--------EEEEe-cccCC
Q 017296 286 --GSCVIKKEINLERPGISGTSIRPDSKIAATAGW-------------DRRVRIYNYRKGS--------ALAIL-KYHHA 341 (374)
Q Consensus 286 --~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-------------dg~v~iwd~~~~~--------~~~~~-~~h~~ 341 (374)
...++........+....++|.|||.+.++.+. -|+|...+.. ++ ....+ .+|.
T Consensus 125 ~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G~ip~~nPf~~~~i~a~G~R- 202 (347)
T 3das_A 125 GAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-GEPAPGNPFPGSPVYSYGHR- 202 (347)
T ss_dssp CCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-SSBCTTCSSTTCCEEEBCCS-
T ss_pred CCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-CCccCCCCCCCCeEEeeCCC-
Confidence 122222111122234567999999988777552 3566656553 22 01122 2444
Q ss_pred ceEEEEEeCCCCEEEEE-eCCC
Q 017296 342 TCNAVSFSSDCKLMASA-SEDS 362 (374)
Q Consensus 342 ~v~~v~~sp~~~~las~-s~D~ 362 (374)
....++|.|+|++.++= +.|+
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~ 224 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDT 224 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSS
T ss_pred CcceEEECCCCCEEEEecCCCC
Confidence 45678999998866553 4444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=86.37 E-value=16 Score=31.68 Aligned_cols=108 Identities=5% Similarity=0.011 Sum_probs=62.7
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
+...+..+.+++++..++.+...+..+-+|-...+ ..... ......+..+.+.|++++++ ++.+|.+.+++...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t--W~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA--WEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS 235 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS--CEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc--eeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence 44568888888877655555433334444321122 11111 11234678889999987665 556888877643334
Q ss_pred eEEEEecc----cCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 331 SALAILKY----HHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 331 ~~~~~~~~----h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
+....+.. +...+..+++.++++.++.+. ++.|
T Consensus 236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 44333321 223588899998888777654 6666
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=83.77 E-value=44 Score=34.73 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=66.4
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC------CCEEEEEeC-CCeEEEEE
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD------SKIAATAGW-DRRVRIYN 326 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~s~~~-dg~v~iwd 326 (374)
.|...+.... +++.++ .+.+..+.++.. .......... ...+.++++.|. ++++|.|.+ |++|+|+.
T Consensus 515 ~I~~As~n~~--~vvva~-g~~l~~fel~~~--~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 515 NISVASCNSS--QVVVAV-GRALYYLQIHPQ--ELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCCEEEECSS--EEEEEE-TTEEEEEEEETT--EEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEEeCCC--EEEEEE-CCEEEEEEeeCC--ceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 4655555432 344444 577888877642 2221122222 346899999863 468999998 99999999
Q ss_pred ccCCeEEEEecc-cCCceEEEEEe--CCCCEEEEEeCCCcEEEecCC
Q 017296 327 YRKGSALAILKY-HHATCNAVSFS--SDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 327 ~~~~~~~~~~~~-h~~~v~~v~~s--p~~~~las~s~D~~v~~W~~~ 370 (374)
+.+.+.+....- -...+.++.+. ....+|..|=.||.+--+.++
T Consensus 589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 987665543221 11233344332 223478888889987666554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=83.65 E-value=45 Score=34.70 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=78.1
Q ss_pred CCcEEEEeccCCCCceeee--ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 230 DGSILVWDIRNPGIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
.|.|.+|++... .+..+ +...+++++++--. + .+.++..+.+++|++..... ++.+.... ..+..+.+.
T Consensus 863 ~Gri~vf~v~~~--kL~lv~~~~v~g~v~al~~~~-g--~Lla~ig~~l~vy~l~~~~~---L~~~~~~~-~~i~~~~l~ 933 (1158)
T 3ei3_A 863 QGRIVVFQYSDG--KLQTVAEKEVKGAVYSMVEFN-G--KLLASINSTVRLYEWTTEKE---LRTECNHY-NNIMALYLK 933 (1158)
T ss_dssp CEEEEEEEEETT--EEEEEEEEEESSCEEEEEEET-T--EEEEEETTEEEEEEECTTSC---EEEEEEEC-CCSCEEEEE
T ss_pred ceEEEEEEEECC--EEEEEEEEEcCCcCEEEeeeC-C--EEEEEcCCEEEEEECCCCce---EEEEeecc-ccEEEEEEe
Confidence 488999998632 22222 22356788876532 2 24445668999999965421 12221111 112233333
Q ss_pred CCCCEEEEEeCCCeEEEEEccC-CeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 308 PDSKIAATAGWDRRVRIYNYRK-GSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-.+.+|+.|..-+.|.+...+. ...+..+.. ++..+.++.|-.+ ..++.+..++++.+....+
T Consensus 934 ~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 934 TKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred ccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 3466888898888888765432 233434433 4567888888655 4667789999999887644
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=12 Score=30.61 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=59.9
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCe-EEEE-Eeeec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGS-CVIK-KEINL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~-~~~~-~~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
-.++.||+++...++ .||.|.-++-...... ..-. ..+.. .=..+..+.|.|+|.+-+.. |+.+.-+..-...
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~ 165 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSN 165 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSST
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCC
Confidence 467888998864444 6798887764221111 1000 01100 01247889999999877766 7775432111110
Q ss_pred ------EEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 332 ------ALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 332 ------~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
....+ +..-..-..+.|.|+|.+.+.. ++ +||...+|
T Consensus 166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 166 QDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp TCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred CcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 01111 1233344557799999877655 66 66666655
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.64 E-value=8.7 Score=33.81 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=42.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE--EEEec---ccCCceEEEEEeCC----CCEEEEEeCC-----CcEE
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILK---YHHATCNAVSFSSD----CKLMASASED-----STVA 365 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~h~~~v~~v~~sp~----~~~las~s~D-----~~v~ 365 (374)
.-..++|.|++++++ +..+|.|++++ +++. +..+. ........|+|+|+ +.+.++-+.+ ..|.
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356899999999666 45679999998 4442 22221 12357889999998 4444544432 4455
Q ss_pred EecC
Q 017296 366 LWEL 369 (374)
Q Consensus 366 ~W~~ 369 (374)
.++.
T Consensus 109 r~~~ 112 (352)
T 2ism_A 109 RLRH 112 (352)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 374 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-20 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-19 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.003 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.3 bits (217), Expect = 4e-20
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 3/143 (2%)
Query: 225 LAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284
++G D S +WD+R G+ H + + + N +G D L++L
Sbjct: 200 VSGACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 285 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 344
+ GI+ S ++ D +++ K +L H +
Sbjct: 259 QELMTYSHDNI--ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 345 AVSFSSDCKLMASASEDSTVALW 367
+ + D +A+ S DS + +W
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 5e-09
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
GH + + +CF G+ R++D + + + + GI SV+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENG 96
S +++ D WD
Sbjct: 278 FSKS--GRLLLAGYDDFNCNVWDALKA 302
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.6 bits (114), Expect = 5e-07
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307
H V+ LS+ +SG D L+++ G C + I+
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR--EGMCR--QTFTGHESDINAICFF 235
Query: 308 PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC--NAVSFSSDCKLMASASEDSTVA 365
P+ AT D R+++ R L + + C +VSFS +L+ + +D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 366 LWEL 369
+W+
Sbjct: 296 VWDA 299
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.4 bits (111), Expect = 1e-06
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 311 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370
++ + D ++++ R+G H + NA+ F + A+ S+D+T L++L
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 371 PPH 373
Sbjct: 257 ADQ 259
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46
D VL GH V+ + + G+ L+IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.9 bits (211), Expect = 2e-19
Identities = 50/366 (13%), Positives = 109/366 (29%), Gaps = 56/366 (15%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P P L GHR+ VT V FH ++ + + +++WD + H+ +
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSV 62
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
++ S L S + + ++ ++ + + +
Sbjct: 63 QDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
A + K + + V + + V +W + T E
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 186 TRLHQNSCGG-SPNFSSKGRGMCMAVQAYLPSKSQGFVN--VLAGYEDGSILVWDIRNPG 242
L ++ +++ + ++ +K G +L+G D +I +WD+ G
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-G 237
Query: 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302
+ L + H V +
Sbjct: 238 MCLMTLVGHDNWVRGVLFH----------------------------------------- 256
Query: 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362
K + D+ +R+++Y+ + L H ++ F + + S D
Sbjct: 257 -----SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Query: 363 TVALWE 368
TV +WE
Sbjct: 312 TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369
+ L H + V F +M SASED+T+ +W+
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.6 bits (210), Expect = 4e-19
Identities = 47/367 (12%), Positives = 100/367 (27%), Gaps = 30/367 (8%)
Query: 27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSVATGPSIGLNKVISQGR 84
Q+ P T +++ R + S H + V + ++ G
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND---GEYLATGC 81
Query: 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANA--KQANEPKDCYEREVGE 142
+ T + + + +G L + S N + P + E
Sbjct: 82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 141
Query: 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSK 202
+ + L + + +
Sbjct: 142 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 201
Query: 203 GRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI------PLTAMKVHLEPVL 256
+ A P + AG D ++ VWD + + H + V
Sbjct: 202 SIEDGVTTVAVSPGDGKYIA---AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 258
Query: 257 CLSIDESCNGGISGGADQKIVLYNLD--------HSTGSCVIKKEINLERPGISGTSIRP 308
+ +SG D+ + L+NL + S + + + +
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHH------ATCNAVSFSSDCKLMASASEDS 362
+ + + DR V ++ + G+ L +L+ H A N S + + A+ S D
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 378
Query: 363 TVALWEL 369
+W+
Sbjct: 379 KARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 60/345 (17%), Positives = 118/345 (34%), Gaps = 48/345 (13%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG----------- 64
H + V V F L G +++ V+ SAA+
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 65 -----IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
I SV P + + D ++ WDIEN + + S
Sbjct: 119 SSDLYIRSVCFSPDG--KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
K + + D + T+ + + P +G AG V +WD
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSLDRAVRVWDS 234
Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
T RL + G G +V + + ++ V ++G D S+ +W+++
Sbjct: 235 ETGFLVERLDSENE--------SGTGHKDSVYSVVFTRDGQSV--VSGSLDRSVKLWNLQ 284
Query: 240 NPGIP-----------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 288
N H + VL ++ ++ +SG D+ ++ ++ +G+
Sbjct: 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK--SGNP 342
Query: 289 VIKKEINLER----PGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329
++ + + +G+S+ P+ + AT D + RI+ Y+K
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA------ 61
GH+ SV V F + + +G+ +++W+ S S ++
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 62 ----AHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96
++SVAT + ++S +D V WD ++G
Sbjct: 304 YIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSG 340
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 308 PDSKIAATAGWDRRVRIYNYRKG-------SALAILKYHHATCNAVSFSSDCKLMASASE 360
D K A DR VR+++ G S H + +V F+ D + + S S
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274
Query: 361 DSTVALWELYPPH 373
D +V LW L +
Sbjct: 275 DRSVKLWNLQNAN 287
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.8 bits (187), Expect = 3e-16
Identities = 45/359 (12%), Positives = 105/359 (29%), Gaps = 18/359 (5%)
Query: 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV 79
++ +++ + + E+ I++ ++ V + + V P N++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD--SNRI 66
Query: 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC-YER 138
++ G D W ++ + + + + ++ +A + C +E+
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 139 EVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE---VEIWDLNTAE-RCTRLHQNSCG 194
E V + V + +V S I+ E
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186
Query: 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254
P + S V D ++ + D T L
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246
Query: 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314
+ I ES ++ G D VL+ D + G +++ +S R +
Sbjct: 247 LAVTFITESSL--VAAGHDCFPVLFTYDSAAGKLSFGGRLDVP----KQSSQRGLTARER 300
Query: 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD----CKLMASASEDSTVALWEL 369
D++ A + H + + +S S C + D +++W++
Sbjct: 301 FQNLDKKASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASA 358
IS + D A + V IY + LK H+ V ++ D + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 359 SEDSTVALWELYPPH 373
D +W L
Sbjct: 70 GTDRNAYVWTLKGRT 84
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310
+EP+ C + ++ + ++ +Y V E+ ++G PDS
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 311 KIAATAGWDRRVRIYNY 327
T G DR ++
Sbjct: 64 NRIVTCGTDRNAYVWTL 80
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 8e-13
Identities = 47/375 (12%), Positives = 113/375 (30%), Gaps = 47/375 (12%)
Query: 4 RPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAH 63
R VL+GH V C + +G+ L++W V + + + H+
Sbjct: 2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--G 58
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
G+ S +I ++ + L + S + + +S ++
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183
+ + + V+G V++WD T
Sbjct: 119 LRVWDIETGQCLHVLM----------GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 168
Query: 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243
L ++ ++V++G D SI VWD+
Sbjct: 169 CLHTLQGHTNRVYSLQFDG-------------------IHVVSGSLDTSIRVWDVETGN- 208
Query: 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303
+ + H + + ++ +SG AD + ++++ ++ +
Sbjct: 209 CIHTLTGHQSLTSGMELKDNIL--VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC- 265
Query: 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-----YHHATCNAVSFSSDCKLMASA 358
++ + T+ D V++++ + G + L + S+ + A
Sbjct: 266 --LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323
Query: 359 SEDST----VALWEL 369
S + T + + +
Sbjct: 324 SRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.001
Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 11/147 (7%)
Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286
G D ++ VWDI + + +SG D + +++ + T
Sbjct: 113 GSRDATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169
Query: 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV 346
L+ S++ D + D +R+++ G+ + L H + + +
Sbjct: 170 LHT------LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223
Query: 347 SFSSDCKLMASASEDSTVALWELYPPH 373
+ ++ S + DSTV +W++
Sbjct: 224 ELKDN--ILVSGNADSTVKIWDIKTGQ 248
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 8e-11
Identities = 38/363 (10%), Positives = 90/363 (24%), Gaps = 45/363 (12%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSV 68
V + + + ++D+ +K +L + G L ++ + + + S + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDLLQSLRYKHPLLCC 62
Query: 69 ATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQ 128
+ I G G S + N + A
Sbjct: 63 NFIDNTD--LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188
+ R G+ V +S + M + + +
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR------LIVGMNNSQVQW 174
Query: 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248
+ N + + G+ ++ + DG + V + G +
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGDDYNSS 233
Query: 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308
K ++ L + + + I P
Sbjct: 234 KRFAFR------------------CHRLNLKDTNLAYPVNSI--------------EFSP 261
Query: 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368
K TAG D + +N + + + + V + ++ A+ D T
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED-SVVKIACSDNILCLATSDDTFKTNA 320
Query: 369 LYP 371
Sbjct: 321 AID 323
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 1e-10
Identities = 40/382 (10%), Positives = 90/382 (23%), Gaps = 61/382 (15%)
Query: 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HRTVSSSWVHSAAHG 64
+ H A + V + + G L++WD S +VH +
Sbjct: 7 ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 65 IVSVATG---PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE 121
V V + L V + G + + I + + + + K
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH 120
Query: 122 PYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181
+ K + T + P L+ +L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDV-----KGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV-----W 236
+ S + S +G + G+ +G++ +
Sbjct: 176 TVESPMTP-SQFATSVDISERGL-------------------IATGFNNGTVQISELSTL 215
Query: 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIV------------LYNLDHS 284
+M + + + + + +L
Sbjct: 216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 275
Query: 285 TGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH---- 340
T S + S + +AGWD ++R ++ + + L H
Sbjct: 276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335
Query: 341 ATCNAVSFSSDCKLMASASEDS 362
+ ++ +A
Sbjct: 336 IEEDILAVDEHGDSLAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 26/150 (17%)
Query: 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN---------LDHSTGSCVIKKEINL 296
A K H + +S + +S D + +++ D S V K ++
Sbjct: 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH----------ATCNAV 346
+ + + AT + + Y + + + + A+
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 347 SFSSD-----CKLMASASEDSTVALWELYP 371
+ + + + T +W+ +P
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHP 155
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 37/352 (10%), Positives = 89/352 (25%), Gaps = 73/352 (20%)
Query: 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111
T ++ H A I SV+ + +S DG +K WD + + +
Sbjct: 6 TANAGKAHDAD--IFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--- 56
Query: 112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171
+ + +
Sbjct: 57 ----------------------------FVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88
Query: 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231
++ + + + ++ + K + A + +A G
Sbjct: 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL--VATDVKG 146
Query: 232 SILVWDIRNPGIPLTAMKVHLEPVLCL---------------SIDESCNGGI-SGGADQK 275
+ +W ++ ++ P L L S+D S G I +G +
Sbjct: 147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGT 206
Query: 276 IVLYNLDHSTGSCVIKKEINLERPGISGTSIRP------------DSKIAATAGWDRRVR 323
+ + L + + ++ S S++ + ++
Sbjct: 207 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 266
Query: 324 IYNY------RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369
A H + ++SF+ + + SA D + W++
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.003
Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 40/244 (16%)
Query: 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQG 220
+ +++WD + + +F K + V + +
Sbjct: 24 NSFTVSCSGD-GYLKVWDNKLLDNENPKDK----SYSHFVHKSGLHHVDVLQAIERDAFE 78
Query: 221 FVNVLAGYEDGSILVWDIRNP-----------GIPLTAMKVHLEPVLCLSIDES---CNG 266
V G +L + I + + MK H L +
Sbjct: 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138
Query: 267 GISGGADQKIVLYNL------------DHSTGSCVIKKEINLERPGISGTSIR--PDSKI 312
++ ++ + S + + P TS+ I
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI 198
Query: 313 AATAGWDRRVRI------YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366
AT + V+I + + + + +V FS L+A A + ++
Sbjct: 199 -ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257
Query: 367 WELY 370
LY
Sbjct: 258 ITLY 261
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 3e-10
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 308 PDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367
K + G D + + G+++ K ++ + S D K + + S D ++
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVY 333
Query: 368 EL 369
E+
Sbjct: 334 EV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 44/314 (14%), Positives = 79/314 (25%), Gaps = 31/314 (9%)
Query: 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGP 72
H V V ++ G G +++WD VS + + I S P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
DG GG +S S+ K L A A P
Sbjct: 108 ------------DGCTLIV----GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192
+ + + + A + L T +
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252
+ Y P+ V + + + + + + +H
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ------LHLHE 265
Query: 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312
VL L +S G D + + G+ + + + E + I D K
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTP--YGASIFQSK---ESSSVLSCDISVDDKY 320
Query: 313 AATAGWDRRVRIYN 326
T D++ +Y
Sbjct: 321 IVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL 76
H + V + F + L W T ++ S S+ ++S
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS---VLSCDISVD--D 318
Query: 77 NKVISQGRDGTVKCWDI 93
+++ D +++
Sbjct: 319 KYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 34/268 (12%), Positives = 65/268 (24%), Gaps = 25/268 (9%)
Query: 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS 73
+ L G L IWD + + S+A ++A P
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133
+ + V + C +
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC 193
++ G + + G + S VE+ +N ++ SC
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267
Query: 194 GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253
S F+ G+ ++ +D + W G + K
Sbjct: 268 VLSLKFAYCGK------------------WFVSTGKDNLLNAWRTPY-GASIFQSK-ESS 307
Query: 254 PVLCLSIDESCNGGISGGADQKIVLYNL 281
VL I ++G D+K +Y +
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 50/361 (13%), Positives = 102/361 (28%), Gaps = 21/361 (5%)
Query: 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATG 71
LRGH SV C + G +R++D++ + + H G+ ++
Sbjct: 6 TTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYA 62
Query: 72 PSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131
++S D TV+ WDI+ G + T + + N
Sbjct: 63 HG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191
+ D D V + + ++
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179
Query: 192 SCGGSPNFSSKGRGM----CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247
++ + + + Y ++ D +I +WD+ N + T
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239
Query: 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307
L D+ + ++ + +K + T+
Sbjct: 240 QGHTALVGLLRLSDKFLVSAAAD--------GSIRGWDANDYSRKFSYHHTNLSAITTFY 291
Query: 308 PDSKIAATAGWDRRVRIYNYRKGSAL-AILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366
I + G + + IYN R G + A + +V+F L+A+ +D L
Sbjct: 292 VSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349
Query: 367 W 367
Sbjct: 350 E 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 1e-06
Identities = 32/318 (10%), Positives = 83/318 (26%), Gaps = 10/318 (3%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
+ L GH V + + ++ + + + + + + +
Sbjct: 45 FLLQLSGHDGGVWALKYAHGGILV---SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
+ +++ RD T+ W + +
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161
Query: 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189
+ + DV Y+ I+D +
Sbjct: 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 221
Query: 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249
+ + + A + +++ DGSI WD + +
Sbjct: 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281
Query: 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309
+L + + ++ + G++ + +YNL +G V I + I + +
Sbjct: 282 TNLSAITTFYVSDNI---LVSGSENQFNIYNL--RSGKLV-HANILKDADQIWSVNFKGK 335
Query: 310 SKIAATAGWDRRVRIYNY 327
+ +AA D + +
Sbjct: 336 TLVAA-VEKDGQSFLEIL 352
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.8 bits (132), Expect = 2e-09
Identities = 40/314 (12%), Positives = 77/314 (24%), Gaps = 24/314 (7%)
Query: 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
V GH ++T + LF+ G + WD + + + A I + T
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWD-ISTGISNRVFPDVHATMITGIKTTS 65
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
L D +K G+ S+ ++ K +S A A
Sbjct: 66 KGDLFT---VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC---- 118
Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192
+ T+ A VA + + +
Sbjct: 119 -YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177
Query: 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252
A+L + Q + + L V
Sbjct: 178 HPAEITSV-----AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232
Query: 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312
P +G D ++++N++ S + I +
Sbjct: 233 SPD--------NVRLATGSLDNSVIVWNMN--KPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 313 AATAGWDRRVRIYN 326
+AG D ++ +N
Sbjct: 283 IVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 1e-06
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 308 PDSKIAATAGWDRRVRIYNYRKGSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVA 365
PD+ AT D V ++N K S I+ H + + + SA +DS +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 366 LWEL 369
W +
Sbjct: 294 FWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 6e-05
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 330 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369
GS + H+ A+S S+D K + SA + + W++
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (85), Expect = 0.001
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC-NAVSFSSDCKLMASA 358
I+ S D K +A + + ++ G + + HAT + +S L +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 359 SEDSTVALW 367
+D +
Sbjct: 74 WDDHLKVVP 82
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 3e-09
Identities = 50/301 (16%), Positives = 98/301 (32%), Gaps = 42/301 (13%)
Query: 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCY 136
K++S RD T+K WD LT T S + +++
Sbjct: 26 QKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQYD----ERVIITGSSDSTVRV 79
Query: 137 EREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS 196
+ + + + M V + + +WD+ + T +
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 197 PNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL 256
+ Y+ S S D +I VW+ + + H +
Sbjct: 140 AVN------VVDFDDKYIVSASG----------DRTIKVWNTST-CEFVRTLNGHKRGIA 182
Query: 257 CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 316
CL + +SG +D I L++++ V++ L R IR D+K +
Sbjct: 183 CLQYRDRLV--VSGSSDNTIRLWDIECGACLRVLEGHEELVRC------IRFDNKRIVSG 234
Query: 317 GWDRRVRIYNYRKG---------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367
+D ++++++ L L H + F D + S+S D T+ +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292
Query: 368 E 368
+
Sbjct: 293 D 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 6e-05
Identities = 39/317 (12%), Positives = 85/317 (26%), Gaps = 35/317 (11%)
Query: 14 LRGHRASVTDV-CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGP 72
+ + V C + +G ++IWD H+ + +
Sbjct: 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
I + + + L ++ N+ S + +
Sbjct: 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127
Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192
VG + + + + +++W+ +T E L+
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGD---------RTIKVWNTSTCEFVRTLN--- 175
Query: 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252
G + V++G D +I +WDI +
Sbjct: 176 ------------GHKRGIACLQYRDRL----VVSGSSDNTIRLWDIECGACL---RVLEG 216
Query: 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PGISG--TSIRPD 309
L I +SG D KI +++L + + L SG ++ D
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 276
Query: 310 SKIAATAGWDRRVRIYN 326
++ D + I++
Sbjct: 277 EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 2e-04
Identities = 6/52 (11%), Positives = 18/52 (34%)
Query: 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM 355
++ D + + D ++I++ IL H + + + +
Sbjct: 19 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 7e-04
Identities = 37/279 (13%), Positives = 82/279 (29%), Gaps = 40/279 (14%)
Query: 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVA 69
+L GH SV + + + I TV+ V++ + +
Sbjct: 47 CKRILTGHTGSVLCLQYDERVIITG--------SSDSTVRVWDVNTGEMLNTLIHHCEAV 98
Query: 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQA 129
+++ +D ++ WD+ + + + + + + Y +
Sbjct: 99 LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD--FDDKYIVSASG 156
Query: 130 NEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH 189
+ + E V T + + + +G + + +WD+ L
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLE 215
Query: 190 QNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN--------P 241
+ R +++G DG I VWD+
Sbjct: 216 GHEELVRCIRFDNKR-------------------IVSGAYDGKIKVWDLVAALDPRAPAG 256
Query: 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
+ L + H V L DE +S D I++++
Sbjct: 257 TLCLRTLVEHSGRVFRLQFDEFQI--VSSSHDDTILIWD 293
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.0 bits (130), Expect = 3e-09
Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 20/288 (6%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAA----H 63
+ + + GH +T + + L +G+ G + W + S+ + S
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ 58
Query: 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123
S++ ++ +N + K N G ++ + ++K
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 118
Query: 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE 183
N+ + VG D+ + +
Sbjct: 119 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA 178
Query: 184 RCTRLHQNSCGGSPNFSSKGRGMCMAVQ-----------AYLPSKSQGFVNVLAGYEDGS 232
+ + + K + V G D +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYN 280
I ++ ++ P + A+ H + V L + + +S GAD I +N
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 7e-07
Identities = 31/296 (10%), Positives = 81/296 (27%), Gaps = 30/296 (10%)
Query: 73 SIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132
++ +N +IS DG + W + + + NS S+ + +
Sbjct: 18 ALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH 77
Query: 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192
+ + +V + +D + + + V + +A ++ +
Sbjct: 78 EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTG--DIIKSVRLNSPGSAVSLSQNYVAV 135
Query: 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252
N + + V L + + + ++ + + I L ++
Sbjct: 136 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 195
Query: 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312
I+ + + +
Sbjct: 196 --------------------------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229
Query: 313 AATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367
AT D + IY+ ++ + L H N + + + L S+ D+ + W
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL-VSSGADACIKRW 284
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 4e-08
Identities = 28/344 (8%), Positives = 78/344 (22%), Gaps = 30/344 (8%)
Query: 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89
+ + A +L + DT + + A + P G + + ++
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLV 59
Query: 90 CWDIENGGLSSNPSLTIKT--------------NSYHFCKLSLVKEPYANAKQANEPKDC 135
D+ G L+ S V+ + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119
Query: 136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195
Y+ E + + V + T +
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179
Query: 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA----GYEDGSILVWDIRNPGIPLTAMKVH 251
+ + + +L D+ + + +++
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239
Query: 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311
+++ + GA + ++L+ + + K + L ++ D
Sbjct: 240 DVFYFSTAVNP--AKTRAFGAYNVLESFDLE--KNASI--KRVPLPH-SYYSVNVSTDGS 292
Query: 312 IAATAGWDRRVRIYNYRKGSALAILKY----HHATCNAVSFSSD 351
G + Y+ + + + F+ D
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 6e-08
Identities = 30/275 (10%), Positives = 73/275 (26%), Gaps = 11/275 (4%)
Query: 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVS 67
+ H T + +G G +RIWDT Q + + + + +
Sbjct: 48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKD 107
Query: 68 VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127
++ + +GR+ + + G + N + + + K S + +
Sbjct: 108 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 167
Query: 128 QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187
++ + A G + +++ +
Sbjct: 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD-GTIVLYNGVDGTKTGV 226
Query: 188 LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247
+S + S + + D +I +W++ + T
Sbjct: 227 FEDDSLKNVAHSGSVFGLTWSPDGTKI----------ASASADKTIKIWNVATLKVEKTI 276
Query: 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282
L I + +S A+ I N +
Sbjct: 277 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.5 bits (116), Expect = 2e-07
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 305 SIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDST 363
+ PD A+A D+ ++I+N + + + + S S +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 364 VALWEL 369
+
Sbjct: 305 INFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 2e-05
Identities = 10/77 (12%), Positives = 13/77 (16%), Gaps = 1/77 (1%)
Query: 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 356
R P V + I H S A
Sbjct: 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Query: 357 SASEDSTVALWELYPPH 373
S V +W+
Sbjct: 75 SGDVHGNVRIWDTTQTT 91
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 5e-07
Identities = 30/338 (8%), Positives = 69/338 (20%), Gaps = 37/338 (10%)
Query: 26 FHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85
+ L + D S + G + P +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPD-NRTAYVLNNHY 61
Query: 86 GTVKCWDIENG----GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK-------- 133
G + D++ + + S + +S + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 134 ------DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTR 187
+ + V T + + A + VAG ++ D+ T +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVA 178
Query: 188 LHQNSCGGSPNFSSKGRGMCMAVQ--------AYLPSKSQGFVNVLAGYEDGSILVWDIR 239
L + + + + L D++
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299
E I G ++ D + K NL+
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY---DLKQRKLI--KAANLDH- 292
Query: 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 337
+ G + ++N + +K
Sbjct: 293 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.3 bits (113), Expect = 6e-07
Identities = 29/348 (8%), Positives = 71/348 (20%), Gaps = 32/348 (9%)
Query: 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSVATGPSIGLNKVISQGRDGTVKC 90
L A + G+ I D VS ++V I V G + + +
Sbjct: 17 LIAFVSRGQAFIQD------VSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70
Query: 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150
+D G + + + + V ++
Sbjct: 71 YDYRTG--------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122
Query: 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV 210
+ + + + T + +
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182
Query: 211 QAYLPSKSQGFVNVLAGYEDGSILVWDIRN------PGIPLTAMKVHLEPVLCLSIDESC 264
+ S+ N+ D + + +
Sbjct: 183 APAFDADSK---NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239
Query: 265 NGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321
+G D ++ G + + S + A
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299
Query: 322 VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369
+ Y+ + + + S+D K + +D + + L
Sbjct: 300 LLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.8 bits (96), Expect = 9e-05
Identities = 27/331 (8%), Positives = 68/331 (20%), Gaps = 20/331 (6%)
Query: 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGE-LRIWDT----VQHRTVSSSWVHSAAHGI 65
+ + V TK GT G+ L I+D + + V +
Sbjct: 36 VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR 95
Query: 66 VSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYAN 125
+ ++++ + + TI NS +K +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT-DFTISDNSRFIAYGFPLKHGETD 154
Query: 126 AKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC 185
T K + + S D
Sbjct: 155 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR-SLDPSPDRVVLNFS 213
Query: 186 TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245
+ S + + S + +
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL----NDMYKRSSPINVDPGDYRMI 269
Query: 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305
++ + E ++ Y++ +++ + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK--------TRKVTEVKNNLTDLR 321
Query: 306 IRPDSKIAATAGWDRRVRIYNYRKGSALAIL 336
+ D K D ++ + K +
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 3e-06
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 308 PDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HATCNAVSFS-SDCKLMASASEDSTV 364
DS+ AT G D +R+++ + V + + S S D T+
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 365 ALWEL 369
+EL
Sbjct: 321 NFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 3e-05
Identities = 37/329 (11%), Positives = 79/329 (24%), Gaps = 15/329 (4%)
Query: 3 KRPPPPDPVAVLRGHRASVTDVCFH-QTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSA 61
K PP P R T + + T I + +R D +
Sbjct: 6 KEIIPPQP----STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 62 AHGIV-SVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK 120
+V +V P G + S G V W S++ + +K+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 121 EPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLN 180
++ + + + ++ + + +
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 181 TAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240
+ + S K V+ S
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300
I V +D + GAD I ++++ +T CV ++ L++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKF--ATVGADATIRVWDV--TTSKCV--QKWTLDKQQ 295
Query: 301 ISGTSIR---PDSKIAATAGWDRRVRIYN 326
+ + + + D + Y
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 1e-04
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 25 CFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84
+R+WD + V + G V + G ++IS
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 316
Query: 85 DGTVKCWDI 93
DGT+ +++
Sbjct: 317 DGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 44/285 (15%), Positives = 79/285 (27%), Gaps = 24/285 (8%)
Query: 9 DPVAVLRGHRAS-VTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG- 64
PV GH +S VT V F K L +G G++ +W + +S V+ +
Sbjct: 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ 112
Query: 65 -----IVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLV 119
I ++ V+ +GRD ++G S + +
Sbjct: 113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL----- 167
Query: 120 KEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179
+ + V S +G V S + +
Sbjct: 168 ---KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224
Query: 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239
+ + + S + + A SQ F D +I VWD+
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA---TVGADATIRVWDVT 281
Query: 240 NPGIPLTAMKVHLEPVLCLSIDESCNGG---ISGGADQKIVLYNL 281
+ + + + + G IS D + Y L
Sbjct: 282 T-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 42/367 (11%), Positives = 88/367 (23%), Gaps = 42/367 (11%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
P PD R V D + + D R + + +
Sbjct: 9 PAPD------ARRVYVNDPA---------HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPV 53
Query: 66 VS-----VATGPSIGLNKVISQGRDGTVKCWDIENGGL------SSNPSLTIKTNSYHFC 114
V+ +A S +++ R V+ +D P + T +
Sbjct: 54 VADDGSFIAH-ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112
Query: 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174
K + E + D P + +
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172
Query: 175 EIWDLNTAERCTRLHQNSCG-----GSPNFSSKGRGMCMAV---QAYLPSKSQGFVNVLA 226
+ T P +S K + + + S G L
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 232
Query: 227 GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286
E + + H + + + A + +V+ D TG
Sbjct: 233 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL--DAKTG 290
Query: 287 SCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCN 344
+ + + I ++ D K + A + D+ + I++ G L +
Sbjct: 291 ERL--AKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347
Query: 345 AVSFSSD 351
++ +
Sbjct: 348 VITTADM 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 33/390 (8%), Positives = 76/390 (19%), Gaps = 92/390 (23%)
Query: 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGI 65
D R+ +T P FAGT E + T+ S + +
Sbjct: 21 SSCDHGPGAISRRSHITL-------PAYFAGT--TENWVSCAGCGVTLGHSLGAFLSLAV 71
Query: 66 VS----VATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE 121
S + R V+ +D
Sbjct: 72 AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------------------- 106
Query: 122 PYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181
+ + + + + S +
Sbjct: 107 -----LPIADIELPDAPRFSVGPRVHIIGNCASS------ACLLFFLFGSSAAAGLSVPG 155
Query: 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241
A SC P + G S+ D+
Sbjct: 156 ASDDQLTKSASCFH-----------------IHPGAAATHY---LGSCPASLAASDLAAA 195
Query: 242 GIPL---TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK------- 291
A + + + G + I+ ++ + +
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESG 255
Query: 292 -KEINLERPGISGTSIRPDSKIAATAGWDR---------RVRIYNYRKGSALAILKYHHA 341
K N G + ++ + G + +
Sbjct: 256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGH 314
Query: 342 TCNAVSFSSDCK--LMASASEDSTVALWEL 369
+A+ + D A+++ + +++
Sbjct: 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 37.9 bits (87), Expect = 0.002
Identities = 47/339 (13%), Positives = 89/339 (26%), Gaps = 57/339 (16%)
Query: 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99
G++ + D + + A H A+G + GRDG V D+ +
Sbjct: 42 GQIALIDGSTYEIKTVLDTGYAVHISRLSASG-----RYLFVIGRDGKVNMIDLWMKEPT 96
Query: 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159
+ IK S S+ +D
Sbjct: 97 T--VAEIKIGSEAR---SIETSKME---------------------------GWED---- 120
Query: 160 GPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS 218
KY + I D T E + + + + + R + +
Sbjct: 121 --KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS---HYRP 175
Query: 219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-GADQKIV 277
+ VNV E G IL+ D + T + +D S I+ A K+V
Sbjct: 176 EFIVNV---KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232
Query: 278 LYNLDHSTGSCVIKKEINLERPGISGTSIRPD--SKIAATAGWDRRVRIYNYRKGSALAI 335
+ + + PG + P A + D V + G+
Sbjct: 233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI----GTDPEG 288
Query: 336 LKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPHA 374
+ + + + ++ L+ +
Sbjct: 289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 327
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 374 | |||
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.79 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.76 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.76 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.7 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.67 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.59 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.05 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.0 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.87 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.85 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.71 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.55 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.5 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.45 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.28 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.04 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.9 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.6 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.57 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.54 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.25 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.2 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.01 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.97 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.19 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.77 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 95.35 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.15 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.08 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.38 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.31 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 91.14 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 90.87 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 86.43 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 86.1 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.24 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 84.99 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 83.98 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 82.59 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.5e-40 Score=293.91 Aligned_cols=295 Identities=19% Similarity=0.277 Sum_probs=222.0
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++.++|+||+++|++|+|+|++++|+||+.||+|+|||..+++.+..+..|. ..+.++++++ +++.+++++.|+++
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~v~~~~--~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAP--SGNYVACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSC--SCEEEEEECT--TSSEEEEEETTCCE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccc--ccEEeeEeec--cceeeeeeccccee
Confidence 6788999999999999999999999999999999999999999888887775 3588888887 56899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++|+......... .......+.... .+... .. .......
T Consensus 122 ~~~~~~~~~~~~~---~~~~~~~~~~~~-----------------~~~~~--------------------~~-~~~~~~~ 160 (340)
T d1tbga_ 122 SIYNLKTREGNVR---VSRELAGHTGYL-----------------SCCRF--------------------LD-DNQIVTS 160 (340)
T ss_dssp EEEESSSSCSCCC---EEEEECCCSSCE-----------------EEEEE--------------------EE-TTEEEEE
T ss_pred ecccccccccccc---cceecccccccc-----------------ccccc--------------------cc-ccccccc
Confidence 9999876532111 000000000000 00000 00 1123334
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..+.....|+.............. ....+ ..+. .....+++|+.|+.|++||+++ ..++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~~----~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~ 222 (340)
T d1tbga_ 161 SGDTTCALWDIETGQQTTTFTGHT----------GDVMS---LSLA----PDTRLFVSGACDASAKLWDVRE-GMCRQTF 222 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEEECCS----------SCEEE---EEEC----TTSSEEEEEETTTEEEEEETTT-TEEEEEE
T ss_pred cccccccccccccccccccccccc----------eeEee---eccc----cccceeEEeecCceEEEEECCC-CcEEEEE
Confidence 456677778776654433322110 00011 1111 1223688999999999999986 4567788
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.+|..+|.+++|+|++..+++++.|+.|++||++.. ..........+...+.+++|+|++++|++|+.||+|++||+.
T Consensus 223 ~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc--ccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence 899999999999999999999999999999999753 222223334455679999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+++.+.++.+|.+.|.+++|+|++++|||||.|++|+|||
T Consensus 301 ~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999999999999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-39 Score=284.45 Aligned_cols=292 Identities=17% Similarity=0.275 Sum_probs=225.3
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
.+++..+|+||+++|++|+|+|++++|+|||.|++|+|||+.+++.+.++.+|.. .+.++++++ ++..+++++.++
T Consensus 6 ~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~--~V~~~~~~~--~~~~~~~~~~~~ 81 (317)
T d1vyhc1 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD--SVQDISFDH--SGKLLASCSADM 81 (317)
T ss_dssp CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS--CEEEEEECT--TSSEEEEEETTS
T ss_pred CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC--cEEEEeeec--cccccccccccc
Confidence 3445679999999999999999999999999999999999999998888877763 478888877 567899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++.+|+....+... ....+.. ...+.. + .++.. .++
T Consensus 82 ~~~~~~~~~~~~~~-------~~~~~~~-----------------~~~~~~------------------~-~~~~~-~~~ 117 (317)
T d1vyhc1 82 TIKLWDFQGFECIR-------TMHGHDH-----------------NVSSVS------------------I-MPNGD-HIV 117 (317)
T ss_dssp CCCEEETTSSCEEE-------CCCCCSS-----------------CEEEEE------------------E-CSSSS-EEE
T ss_pred cccccccccccccc-------ccccccc-----------------cceeee------------------c-cCCCc-eEE
Confidence 99999987642110 0000000 000000 0 01112 345
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+++.|+.+++||+++++.+..+..+. ....+ ..+.+ ....+++++.|+.|++|+++. .....
T Consensus 118 ~~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~~~----~~~~l~~~~~d~~v~~~~~~~-~~~~~ 179 (317)
T d1vyhc1 118 SASRDKTIKMWEVQTGYCVKTFTGHR----------EWVRM---VRPNQ----DGTLIASCSNDQTVRVWVVAT-KECKA 179 (317)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCS----------SCEEE---EEECT----TSSEEEEEETTSCEEEEETTT-CCEEE
T ss_pred eeccCcceeEeecccceeeeEEccCC----------Cccee---eeccc----CCCEEEEEeCCCeEEEEeecc-ceeeE
Confidence 67778999999999998777664321 11111 12322 223688999999999999986 45567
Q ss_pred eeecCccCeEEEEEecCC--------------------CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESC--------------------NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~--------------------~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
.+.+|...+.++.+.++. ..+++++.|+.|++||++.. .+. ..+..|...+.+++|
T Consensus 180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~--~~~~~~~~~v~~~~~ 255 (317)
T d1vyhc1 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCL--MTLVGHDNWVRGVLF 255 (317)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEE--EEEECCSSCEEEEEE
T ss_pred EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC--cEE--EEEeCCCCCEEEEEE
Confidence 788899999999886543 24678999999999998643 332 345567778999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 307 RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 307 sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+|++++|++|+.||+|++||+.+++.+.++.+|.+.|++++|+|++++|||||.|++|+||+
T Consensus 256 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-38 Score=284.82 Aligned_cols=290 Identities=14% Similarity=0.212 Sum_probs=212.0
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceee---eeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---SSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
+.+.++ +|...|++|+|+|+|++|+||+ |+.|+|||+.++.... ......+...|.++++++ ++++|++++.|
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--dg~~l~s~~~d 118 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEA 118 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESS
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--CCCEEEEeecc
Confidence 345555 8999999999999999999998 7999999987654322 111111223588899987 67899999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+..... .. ......+...+ .+.. + .++. .++
T Consensus 119 g~i~iwd~~~~~~----~~-~~~~~~~~~~v-----------------~~~~------------------~-~~~~-~~l 156 (337)
T d1gxra_ 119 STLSIWDLAAPTP----RI-KAELTSSAPAC-----------------YALA------------------I-SPDS-KVC 156 (337)
T ss_dssp SEEEEEECCCC------EE-EEEEECSSSCE-----------------EEEE------------------E-CTTS-SEE
T ss_pred ccccccccccccc----cc-ccccccccccc-----------------cccc------------------c-cccc-ccc
Confidence 9999999875421 10 00000000000 0000 0 0112 245
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++++.|+.|++||+++++.......+ .....++ .+.+. ...+++|+.||.|++||+++. ..+
T Consensus 157 ~s~~~d~~i~~~~~~~~~~~~~~~~~----------~~~v~~l---~~s~~----~~~~~~~~~d~~v~i~d~~~~-~~~ 218 (337)
T d1gxra_ 157 FSCCSDGNIAVWDLHNQTLVRQFQGH----------TDGASCI---DISND----GTKLWTGGLDNTVRSWDLREG-RQL 218 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCC----------SSCEEEE---EECTT----SSEEEEEETTSEEEEEETTTT-EEE
T ss_pred cccccccccccccccccccccccccc----------ccccccc---ccccc----ccccccccccccccccccccc-eee
Confidence 66778899999999998766554321 1111222 23222 236888999999999999863 334
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..+ .|..+|.++++++++..+++++.|+.+++||++.... .....|...+.+++|+|++++|++++.||+|++|
T Consensus 219 ~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iw 292 (337)
T d1gxra_ 219 QQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccc-ccccceEEEEEcccccccceecccccccccccccccc-----ccccccccccceEEECCCCCEEEEEeCCCeEEEE
Confidence 433 5889999999999999999999999999999975431 1234566789999999999999999999999999
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|+.+++.+..+. |...|.+++|+||+++|||||.|++|+||++
T Consensus 293 d~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 293 RTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999887765 8889999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-38 Score=288.87 Aligned_cols=293 Identities=19% Similarity=0.243 Sum_probs=211.6
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee----------------ceeeeEEeccCCcccc
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS----------------AAHGIVSVATGPSIGL 76 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 76 (374)
...+|++.|+||+|+|+|++|+||+ |++|+|||+.+++.+..+..+. ....|.+++|++ ++
T Consensus 57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~--~~ 133 (388)
T d1erja_ 57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP--DG 133 (388)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT--TS
T ss_pred eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC--CC
Confidence 3447999999999999999999987 8999999999887766554332 112377888887 67
Q ss_pred ceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCC
Q 017296 77 NKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV 156 (374)
Q Consensus 77 ~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (374)
++|++|+.|++|++||...++.. .....|...+ .+.. +
T Consensus 134 ~~l~s~~~dg~v~i~~~~~~~~~-------~~~~~h~~~v-----------------~~~~------------------~ 171 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIENRKIV-------MILQGHEQDI-----------------YSLD------------------Y 171 (388)
T ss_dssp SEEEEEETTSCEEEEETTTTEEE-------EEECCCSSCE-----------------EEEE------------------E
T ss_pred Ccceecccccccccccccccccc-------cccccccccc-----------------cccc------------------c
Confidence 89999999999999999876321 0000000000 0000 0
Q ss_pred CCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEE
Q 017296 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 157 ~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iw 236 (374)
... ...+++++.++.+++||+++........... ...+ . .+.+ .....+++|+.||.|++|
T Consensus 172 -~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~~--~-~~~~---~~~~~l~~~~~d~~i~i~ 232 (388)
T d1erja_ 172 -FPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-----------GVTT--V-AVSP---GDGKYIAAGSLDRAVRVW 232 (388)
T ss_dssp -CTT-SSEEEEEETTSEEEEEETTTTEEEEEEECSS-----------CEEE--E-EECS---TTCCEEEEEETTSCEEEE
T ss_pred -ccc-cccccccccceeeeeeecccccccccccccc-----------cccc--c-cccC---CCCCeEEEEcCCCeEEEe
Confidence 011 1234566778999999999887655443210 1111 1 1222 122368899999999999
Q ss_pred eccCCCCcee-------eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE--------EEEEeeecCCCCe
Q 017296 237 DIRNPGIPLT-------AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC--------VIKKEINLERPGI 301 (374)
Q Consensus 237 dl~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~--------~~~~~~~~~~~~v 301 (374)
|+++.. ... ...+|..+|.++.|++++..+++++.|+.|++||+....... ........|...+
T Consensus 233 ~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 311 (388)
T d1erja_ 233 DSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 311 (388)
T ss_dssp ETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE
T ss_pred ecccCc-cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceE
Confidence 997643 222 234688999999999999999999999999999986432211 1112234566789
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEE------eCCCCEEEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF------SSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~------sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+++|+|++++|++|+.||+|++||+.+++++.++++|.+.|.++++ +|++++|||||.|++|+||++.
T Consensus 312 ~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999999999999999999999999999999999999999975 6789999999999999999975
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-36 Score=267.19 Aligned_cols=326 Identities=18% Similarity=0.264 Sum_probs=214.1
Q ss_pred CCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
.+.++..+|+||++.|.+ +++++|++|+|||.|++|+|||+.+++++.++.+|.. .+.++++++ +.+++++.|
T Consensus 4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~--~V~~v~~~~----~~l~s~s~D 76 (342)
T d2ovrb2 4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG--GVWSSQMRD----NIIISGSTD 76 (342)
T ss_dssp SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSS--CEEEEEEET----TEEEEEETT
T ss_pred CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC--CEEEEEeCC----Cccccceec
Confidence 356788999999999965 4666899999999999999999999999988888864 477787765 589999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCc--ccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKD--CYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
+++++|+........ .................... ....... .+....+.....................
T Consensus 77 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (342)
T d2ovrb2 77 RTLKVWNAETGECIH----TLYGHTSTVRCMHLHEKRVV---SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR- 148 (342)
T ss_dssp SCEEEEETTTTEEEE----EECCCSSCEEEEEEETTEEE---EEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-
T ss_pred cccccccccccccee----cccccceeEeeeeccccccc---ccccceeEEEeecccccceeeeecccccceeeccccc-
Confidence 999999997652110 00000000000000000000 0000000 0000000000000000000000001111
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.++.++.|+.+++||++..+.+..+..+. ....+ +.. ....+++|+.||.|++||++. ..
T Consensus 149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~-----~~~----~~~~l~s~~~dg~i~~~d~~~-~~ 208 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWDPETETCLHTLQGHT----------NRVYS-----LQF----DGIHVVSGSLDTSIRVWDVET-GN 208 (342)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCS----------SCEEE-----EEE----CSSEEEEEETTSCEEEEETTT-CC
T ss_pred eeeeecCCCeEEEeecccceeeEEEcCcc----------ccccc-----ccC----CCCEEEEEeCCCeEEEeeccc-ce
Confidence 34566678999999999888776664321 11111 111 123689999999999999986 45
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+..+.+|...+.++.++++ .+++++.|+.|++||+........+ .....|...+.++.++ +.++++|+.||+|+
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 209 CIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFN--KNFVITSSDDGTVK 283 (342)
T ss_dssp EEEEECCCCSCEEEEEEETT--EEEEEETTSCEEEEETTTCCEEEEE-CSTTSCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred eeeEecccccceeEEecCCC--EEEEEcCCCEEEEEecccccccccc-cccceeeeceeecccC--CCeeEEEcCCCEEE
Confidence 67788899999999988764 6899999999999998754322221 1112233445555555 56899999999999
Q ss_pred EEEccCCeEEEEec-----ccCCceEEEEEeCCCCEEEEEeCCCc----EEEecCCC
Q 017296 324 IYNYRKGSALAILK-----YHHATCNAVSFSSDCKLMASASEDST----VALWELYP 371 (374)
Q Consensus 324 iwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~las~s~D~~----v~~W~~~~ 371 (374)
+||+++++.++.+. +|.+.|++++|+|++.+||+|+.||+ |++||++.
T Consensus 284 iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 99999999887763 57788999999999999999999997 99999863
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-35 Score=261.32 Aligned_cols=292 Identities=17% Similarity=0.233 Sum_probs=201.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee-eeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
+...++.||+++|++|+|+|++++|+|||.|++|++||+.+++.+..+. .|. ..+.++++++ ++ .+++++.|++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~--~~v~~v~~~~--~g-~~~~~~~d~~ 77 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA--TMITGIKTTS--KG-DLFTVSWDDH 77 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS--SCEEEEEECT--TS-CEEEEETTTE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC--CcEEEEEeec--cc-eeecccceee
Confidence 4578999999999999999999999999999999999999988776653 343 4578888887 33 5778888999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++|+.............. ....... . + .+.++ ..+++ +
T Consensus 78 v~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~--------~----------~~s~~-g~~~~-~ 116 (299)
T d1nr0a2 78 LKVVPAGGSGVDSSKAVAN-KLSSQPL--------------------G--------L----------AVSAD-GDIAV-A 116 (299)
T ss_dssp EEEECSSSSSSCTTSCCEE-ECSSCEE--------------------E--------E----------EECTT-SSCEE-E
T ss_pred EEEeccCCccccccccccc-ccccccc--------------------c--------c----------ccccc-ccccc-c
Confidence 9999987543211110000 0000000 0 0 00111 22333 2
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
+ .++.+++|+..... ..... + ...+ ..+.++ ...+++|+.||.|++||++........
T Consensus 117 ~-~~~~i~~~~~~~~~--~~~~~--------~----~~~~---~~~s~~----~~~l~~g~~dg~i~~~d~~~~~~~~~~ 174 (299)
T d1nr0a2 117 A-CYKHIAIYSHGKLT--EVPIS--------Y----NSSC---VALSND----KQFVAVGGQDSKVHVYKLSGASVSEVK 174 (299)
T ss_dssp E-ESSEEEEEETTEEE--EEECS--------S----CEEE---EEECTT----SCEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred c-cccccccccccccc--ccccc--------c----cccc---cccccc----ccccccccccccccccccccccccccc
Confidence 3 34689999854321 11110 0 1111 123332 236889999999999999764322233
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
...|..+|.++++++++..+++++.|+.|++||+..... ......+..|...|.+++|+|++++|++|+.||+|++||+
T Consensus 175 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~ 253 (299)
T d1nr0a2 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253 (299)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccceEEEcCCCEEEEEEC
Confidence 457899999999999999999999999999999864321 1111234456778999999999999999999999999999
Q ss_pred cCCeE--EEEecccC-CceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 328 RKGSA--LAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 328 ~~~~~--~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++++. ......|. ..|.++.| +++++|+|+|.|++||+||+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 254 NKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred CCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 87643 23333444 45666654 677899999999999999983
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-34 Score=257.87 Aligned_cols=292 Identities=16% Similarity=0.115 Sum_probs=209.6
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
.+++.+..++++|+|+.|+.++ ++.|.+||+.++.....+.+|. ..+.++++++ ++++|++|+.|++|++||+.+
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~--~~v~~~~~sp--~g~~latg~~dg~i~iwd~~~ 89 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSP--SGYYCASGDVHGNVRIWDTTQ 89 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS--SCEEEEEECT--TSSEEEEEETTSEEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCC--CCEEEEEEeC--CCCeEeccccCceEeeeeeec
Confidence 3456667899999999999875 6789999998887777777775 4588999987 678999999999999999987
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc-cCCCeE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-EQLSEV 174 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i 174 (374)
+.... ...+....... .+.. +.+++ +++++++ ..+..+
T Consensus 90 ~~~~~--~~~~~~~~~~v--------------------~~v~------------------~s~d~-~~l~~~~~~~~~~~ 128 (311)
T d1nr0a1 90 TTHIL--KTTIPVFSGPV--------------------KDIS------------------WDSES-KRIAAVGEGRERFG 128 (311)
T ss_dssp TTCCE--EEEEECSSSCE--------------------EEEE------------------ECTTS-CEEEEEECCSSCSE
T ss_pred ccccc--ccccccccCcc--------------------cccc------------------ccccc-cccccccccccccc
Confidence 64211 00010000000 0000 11222 3344433 346779
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
++|++++++....+..+ . ....++ .|.++ +...+++|+.||.|++||+++ ......+..|..+
T Consensus 129 ~v~~~~~~~~~~~l~~h--------~--~~v~~v---~~~~~---~~~~l~sgs~d~~i~i~d~~~-~~~~~~~~~~~~~ 191 (311)
T d1nr0a1 129 HVFLFDTGTSNGNLTGQ--------A--RAMNSV---DFKPS---RPFRIISGSDDNTVAIFEGPP-FKFKSTFGEHTKF 191 (311)
T ss_dssp EEEETTTCCBCBCCCCC--------S--SCEEEE---EECSS---SSCEEEEEETTSCEEEEETTT-BEEEEEECCCSSC
T ss_pred ccccccccccccccccc--------c--cccccc---ccccc---ceeeecccccccccccccccc-ccccccccccccc
Confidence 99999988765554321 1 111111 24332 333588899999999999986 4556777889999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE---eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK---EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
|.++.++|++..+++++.|+.|++||+...+....+.. ....|...|.+++|+|++++|++|+.||+|+|||+++++
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999999875432222111 122456779999999999999999999999999999999
Q ss_pred EEEEecccCC-ceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 332 ALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 332 ~~~~~~~h~~-~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++++..|.. ....+.+.++++.|++++.||.|++||.+
T Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 9999887653 22333455566789999999999999974
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.3e-34 Score=250.04 Aligned_cols=271 Identities=21% Similarity=0.294 Sum_probs=195.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+|+++|+||+++|++|+|+| |+|||.||+|++||+.++. ..|. ..+.++.+++ +..+++++.|+++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~--~~V~~~~~~~---~~~~~s~s~D~~v 69 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHS--NLIVSLDNSK---AQEYSSISWDDTL 69 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCC--SCEEEEECCS---TTCCEEEETTTEE
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCC--CCEEEEEecC---CCeEEEEeecccc
Confidence 68899999999999999987 9999999999999987643 2354 3467777764 3578999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+|++...+...++. + +. . ..+ ..+++++
T Consensus 70 ~~w~~~~~~~~~~~~----------~-~~--------------------------------------~-~~~-~~~~~~~ 98 (287)
T d1pgua2 70 KVNGITKHEFGSQPK----------V-AS--------------------------------------A-NND-GFTAVLT 98 (287)
T ss_dssp EETTEEEEECSSCEE----------E-EE--------------------------------------E-CSS-SEEEEEE
T ss_pred cccccccccccccee----------e-ee--------------------------------------e-ccC-CceEEEe
Confidence 999986432111000 0 00 0 011 2233333
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC-CcEEEEeccCCCCceee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED-GSILVWDIRNPGIPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d-g~i~iwdl~~~~~~~~~ 247 (374)
. ++.+.+|+..+++.+..+.... ...+ +.+. +. .+++++.| +.|++|++.........
T Consensus 99 ~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~~---~~-~~~v~~~~~~~v~~~~~~~~~~~~~~ 157 (287)
T d1pgua2 99 N-DDDLLILQSFTGDIIKSVRLNS-----------PGSA-----VSLS---QN-YVAVGLEEGNTIQVFKLSDLEVSFDL 157 (287)
T ss_dssp T-TSEEEEEETTTCCEEEEEECSS-----------CEEE-----EEEC---SS-EEEEEETTTSCEEEEETTEEEEEEEC
T ss_pred e-cccceeeeccceeeeeeccccc-----------eeee-----eecc---Cc-ceeeeccccceeeeeeccccceeeee
Confidence 3 4578899998888766654210 1111 1111 12 35555555 68999998643222222
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC----------CCEEEEEe
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD----------SKIAATAG 317 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----------~~~l~s~~ 317 (374)
...|..++.+++|+|++..+++|+.||.|++||+... .. .......|...+.+++|+|+ +.++++|+
T Consensus 158 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~--~~-~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs 234 (287)
T d1pgua2 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--EV-KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234 (287)
T ss_dssp SSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EE-EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE
T ss_pred eeccCCceeEEEeccCccccccccccccccceeeccc--cc-ccccccccccccceeeecccccccccccCCCCeeEeec
Confidence 3347789999999999999999999999999998643 22 12334567778999999874 46899999
Q ss_pred CCCeEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 318 WDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 318 ~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.|++|++||+++ ++.+..+.+|.+.|++++|+|++ .|+|+|.|++||+|++
T Consensus 235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 999999999976 56677788999999999999986 5899999999999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.9e-33 Score=248.20 Aligned_cols=300 Identities=18% Similarity=0.280 Sum_probs=201.2
Q ss_pred CeEEeecCCCce-eEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHRASV-TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~~~V-~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..+|+||.+.| +|++| ++++|+||+.|++|+|||+.+++.+..+.+|.. .|.++++++ ++.|+|++.|++|
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~--~V~~l~~s~---~~~l~s~s~D~~i 76 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALKYAH---GGILVSGSTDRTV 76 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS--CEEEEEEET---TTEEEEEETTCCE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC--CEEEEEEcC---CCEEEEEeccccc
Confidence 367899999986 56655 678999999999999999999999999888864 488888875 3689999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++|++..++... ......... ..... ....+ ...++++
T Consensus 77 ~iw~~~~~~~~~-----~~~~~~~~~-------------------~~~~~-----------------~~~~~-~~~~~~~ 114 (355)
T d1nexb2 77 RVWDIKKGCCTH-----VFEGHNSTV-------------------RCLDI-----------------VEYKN-IKYIVTG 114 (355)
T ss_dssp EEEETTTTEEEE-----EECCCSSCE-------------------EEEEE-----------------EEETT-EEEEEEE
T ss_pred cccccccccccc-----ccccccccc-------------------ccccc-----------------ccccc-cceeeee
Confidence 999998653210 000000000 00000 00011 2245677
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEE--------EeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAV--------QAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
+.|++|++||+++............................. ....+ ....++++..|+.|++||++.
T Consensus 115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~d~~i~~~d~~~ 190 (355)
T d1nexb2 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQ 190 (355)
T ss_dssp ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE----ETTEEEEEETTSCEEEEETTT
T ss_pred cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc----ccceeeeecccceeeeeeccc
Confidence 788999999998876443322111000000000001111000 00111 112578899999999999976
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
...+....++...+.++.+++.+..+++++.|++|++||++... . ...+..|...+.+++++| ++|++|+.||
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~--~~~~~~h~~~v~~~~~~~--~~l~~~~~dg 263 (355)
T d1nexb2 191 -MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--L--MYTLQGHTALVGLLRLSD--KFLVSAAADG 263 (355)
T ss_dssp -TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC--E--EEEECCCSSCCCEEEECS--SEEEEECTTS
T ss_pred -ccceeeeeccccccccccccccceeeecccccceEEeeeccccc--c--cccccccccccccccccc--ceeeeeeccc
Confidence 44566777888999999999999999999999999999987543 2 234556777888888875 6899999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEE-EEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAV-SFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v-~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|++||+.+++.. +..|...+.++ .|++++++|++|+ |++|++||+..+
T Consensus 264 ~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg 313 (355)
T d1nexb2 264 SIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 313 (355)
T ss_dssp EEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred cccccccccccee--cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCC
Confidence 9999999887654 44566666555 4677877777765 899999998654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-33 Score=251.62 Aligned_cols=290 Identities=12% Similarity=0.143 Sum_probs=197.5
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
+.++|+|++|+|+|++|++|+.|+.|+|||..+++ .+..+.+|.. .|.+++|++ ++++|++++.|++|++||+.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~--~V~~l~fsp--~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG--QVTGVDWAP--DSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS--CEEEEEEET--TTTEEEEEETTSCEEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCC--CEEEEEECC--CCCEEEEEECCCeEEEEeec
Confidence 35889999999999999999999999999997765 4555666653 488889987 56899999999999999998
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
++... .......+. ....+.. +.++ .+ .+++++.|+++
T Consensus 82 ~~~~~-----~~~~~~~~~-----------------~~v~~i~------------------~~p~-~~-~l~~~s~d~~i 119 (371)
T d1k8kc_ 82 GRTWK-----PTLVILRIN-----------------RAARCVR------------------WAPN-EK-KFAVGSGSRVI 119 (371)
T ss_dssp TTEEE-----EEEECCCCS-----------------SCEEEEE------------------ECTT-SS-EEEEEETTSSE
T ss_pred ccccc-----ccccccccc-----------------ccccccc------------------cccc-cc-cceeecccCcc
Confidence 65210 000000000 0000000 1112 22 35566778999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC------------
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG------------ 242 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~------------ 242 (374)
++|+++............ ........+ ..+.|+ ...+++|+.||+|++||+....
T Consensus 120 ~i~~~~~~~~~~~~~~~~------~~~~~~v~~---v~~~p~----~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~ 186 (371)
T d1k8kc_ 120 SICYFEQENDWWVCKHIK------KPIRSTVLS---LDWHPN----SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186 (371)
T ss_dssp EEEEEETTTTEEEEEEEC------TTCCSCEEE---EEECTT----SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBS
T ss_pred eeeeeecccccccccccc------ccccccccc---cccccc----ccceeccccCcEEEEEeeccCccccccccccccc
Confidence 999987765332221110 001111122 134432 2368999999999999985321
Q ss_pred -----CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 243 -----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 243 -----~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
..+.....|...|.+++|+|++..+++++.|++|++||++... .. ..+..|...+.+++|+|++++|++|
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~--~~~~~~~~~v~s~~fs~d~~~la~g- 261 (371)
T d1k8kc_ 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AV--ATLASETLPLLAVTFITESSLVAAG- 261 (371)
T ss_dssp CCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--EE--EEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred cccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc--ce--eeeecccccceeeeecCCCCEEEEE-
Confidence 1234456788999999999999999999999999999997543 22 3345566789999999999888765
Q ss_pred CCCeEEEEEccCC--eEE---------------------------------------EEecccCCceEEEEEeCCC----
Q 017296 318 WDRRVRIYNYRKG--SAL---------------------------------------AILKYHHATCNAVSFSSDC---- 352 (374)
Q Consensus 318 ~dg~v~iwd~~~~--~~~---------------------------------------~~~~~h~~~v~~v~~sp~~---- 352 (374)
.|+.+++|..... +.. .....|.+.|+++++.|.+
T Consensus 262 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~ 341 (371)
T d1k8kc_ 262 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341 (371)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcce
Confidence 5777777655321 100 0001388899999998754
Q ss_pred CEEEEEeCCCcEEEecCC
Q 017296 353 KLMASASEDSTVALWELY 370 (374)
Q Consensus 353 ~~las~s~D~~v~~W~~~ 370 (374)
..|+|+|.||+|++||+.
T Consensus 342 ~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 342 SQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp SEEEEEETTSEEEEEEHH
T ss_pred EEEEEEcCCCeEEEEeCC
Confidence 368999999999999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-32 Score=235.10 Aligned_cols=280 Identities=17% Similarity=0.319 Sum_probs=198.7
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+.+....+|...|+|++| ++++|+|||.|++|+|||+.+++++.++.+|.. .|.++++. +++|+||+.|++
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~--~V~~v~~~----~~~l~s~s~D~~ 76 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG--SVLCLQYD----ERVIITGSSDST 76 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS--CEEEEECC----SSEEEEEETTSC
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--CEeeeecc----cceeeccccccc
Confidence 3456677889999998765 789999999999999999999999999888864 47777764 478999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++|++..+.... .......... . . ..... .+++
T Consensus 77 i~~~~~~~~~~~~----~~~~~~~~~~----------------------~------------------~-~~~~~-~~~~ 110 (293)
T d1p22a2 77 VRVWDVNTGEMLN----TLIHHCEAVL----------------------H------------------L-RFNNG-MMVT 110 (293)
T ss_dssp EEEEESSSCCEEE----EECCCCSCEE----------------------E------------------E-ECCTT-EEEE
T ss_pred ccccccccccccc----cccccccccc----------------------c------------------c-ccccc-ceee
Confidence 9999998763210 0000000000 0 0 00011 2445
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
+..++.+++||+.+........... ..... + ....+. ...+++++.|+.|++||+++ ...+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--v-~~~~~~------~~~~~~~s~d~~i~~~d~~~-~~~~~~ 173 (293)
T d1p22a2 111 CSKDRSIAVWDMASPTDITLRRVLV-------GHRAA--V-NVVDFD------DKYIVSASGDRTIKVWNTST-CEFVRT 173 (293)
T ss_dssp EETTSCEEEEECSSSSCCEEEEEEC-------CCSSC--E-EEEEEE------TTEEEEEETTSEEEEEETTT-CCEEEE
T ss_pred cccccceeEeecccccccccccccc-------ccccc--c-ccceec------ccccccccCCCceeeecCCC-CcEEEE
Confidence 5667899999998765322221100 00011 1 111111 12477899999999999986 456777
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|...+..+.+++ ..+++++.|++|++||++... .. .....+...+. .+++++.+|++|+.||+|++||+
T Consensus 174 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~--~~--~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~ 245 (293)
T d1p22a2 174 LNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGA--CL--RVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDL 245 (293)
T ss_dssp EECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCC--EE--EEECCCSSCEE--EEECCSSEEEEEETTSCEEEEEH
T ss_pred EcccccccccccCCC--CeEEEecCCCEEEEEecccce--ee--eeecccceeee--eccccceEEEEEcCCCEEEEEEC
Confidence 888999999988875 468999999999999997543 22 22333444443 56778899999999999999998
Q ss_pred cC---------CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 328 RK---------GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 328 ~~---------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.. ...+..+.+|.+.|.+++| ++++|||+|.|++|++||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp HHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred CCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 53 2457788999999999998 567899999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.7e-32 Score=241.33 Aligned_cols=307 Identities=18% Similarity=0.241 Sum_probs=200.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++.+|++|+++|++|+|+++ .+|+||+.|++|++|+....+.......+..........+.+ +...+++++.|++
T Consensus 43 ~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~ 119 (355)
T d1nexb2 43 KKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNT 119 (355)
T ss_dssp TEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSE
T ss_pred CcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccc--ccceeeeecCCCc
Confidence 4678999999999999999984 689999999999999998877655443332222233333333 5578999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCC-CCCCCCceEEE
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD-VPAEGPKYMAV 166 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 166 (374)
|++||+.++....... ..+........ .. ......... ..+.... .....+. +++
T Consensus 120 i~iw~~~~~~~~~~~~------~~~~~~~~~~~-~~-------~~~~~~~~~---------~~~~~~v~~~~~~~~-~~~ 175 (355)
T d1nexb2 120 LHVWKLPKESSVPDHG------EEHDYPLVFHT-PE-------ENPYFVGVL---------RGHMASVRTVSGHGN-IVV 175 (355)
T ss_dssp EEEEECCC-----------------CCCEEESC-TT-------TCTTEEEEE---------ECCSSCEEEEEEETT-EEE
T ss_pred EEEEEccCCceecccc------ccceeccceec-cc-------cccceeeee---------eeccccccccccccc-eee
Confidence 9999998764221000 00000000000 00 000000000 0000000 0001112 456
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.+..|+.+++||+++++.+....... ....+ ..+.+. ...+++++.|++|++||+++ ...+.
T Consensus 176 ~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~---~~~~~~----~~~~~~~~~d~~i~i~d~~~-~~~~~ 237 (355)
T d1nexb2 176 SGSYDNTLIVWDVAQMKCLYILSGHT----------DRIYS---TIYDHE----RKRCISASMDTTIRIWDLEN-GELMY 237 (355)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS----------SCEEE---EEEETT----TTEEEEEETTSCEEEEETTT-CCEEE
T ss_pred eecccceeeeeecccccceeeeeccc----------ccccc---cccccc----ceeeecccccceEEeeeccc-ccccc
Confidence 67778999999999988766554221 11111 122222 23688999999999999986 45677
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE-EEECCCCCEEEEEeCCCeEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG-TSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~~~dg~v~iw 325 (374)
.+++|..+|.++.+++ ..+++++.||+|++||++... ..+ ..|...+.+ ..++|+++++++| .|++|++|
T Consensus 238 ~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vw 308 (355)
T d1nexb2 238 TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS--RKF----SYHHTNLSAITTFYVSDNILVSG-SENQFNIY 308 (355)
T ss_dssp EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC--EEE----EEECTTCCCCCEEEECSSEEEEE-ETTEEEEE
T ss_pred cccccccccccccccc--ceeeeeecccccccccccccc--eec----ccccCCceEEEEEcCCCCEEEEE-eCCEEEEE
Confidence 8899999999999976 468999999999999997543 222 223333444 4677888877766 49999999
Q ss_pred EccCCeEEE-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 326 NYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 326 d~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|+++++.+. .+.+|.+.|.+++|+|+ .++++++.||+++||-+
T Consensus 309 d~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 309 NLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp ETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred ECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 999999875 46789999999999987 57889999999877754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-32 Score=242.42 Aligned_cols=304 Identities=11% Similarity=0.071 Sum_probs=199.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceee---eeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS---SSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
+.+.++++|++.|++|+|+|++++|+|||.|++|+|||+.++.... ....|. ..|.+++|++. ++..+++|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~--~~V~~v~f~~~-~~~~l~sg~~d 78 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK--HPLLCCNFIDN-TDLQIYVGTVQ 78 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS--SCEEEEEEEES-SSEEEEEEETT
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCC--CCEEEEEEeCC-CCCEEEEcccc
Confidence 4577889999999999999999999999999999999987654322 222343 45888888763 34689999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++|++..+.... .. ..+.. ..... . ....+ ...+
T Consensus 79 ~~v~~w~~~~~~~~~----~~---~~~~~----------------~~~~~-~------------------~~~~~-~~~~ 115 (342)
T d1yfqa_ 79 GEILKVDLIGSPSFQ----AL---TNNEA----------------NLGIC-R------------------ICKYG-DDKL 115 (342)
T ss_dssp SCEEEECSSSSSSEE----EC---BSCCC----------------CSCEE-E------------------EEEET-TTEE
T ss_pred cceeeeecccccccc----cc---ccccc----------------ccccc-c------------------ccccc-cccc
Confidence 999999998753210 00 00000 00000 0 00011 1235
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc-
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP- 244 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~- 244 (374)
++++.++++++||++++............ ............ .. ....+++++.|+.|++||++.....
T Consensus 116 ~~~~~~~~~~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~----~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNTKVKNKIFTM---DT----NSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp EEEETTSEEEEECHHHHTTBCEEEEESCS----SSSSSCCCEEEE---EE----CSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred cccccccccceeeccccccceeeeccccc----ccccceeeeeee---ec----cCCceeeecCCCcEEEEecccCcccc
Confidence 56677899999999775533222211100 000011111111 11 1225888999999999999754321
Q ss_pred -eeeeecCccCeEEEEE-ecCCCceEEEecCCeEEEEEcCCCCCe------EEEEE-----eeecCCCCeEEEEECCCCC
Q 017296 245 -LTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGS------CVIKK-----EINLERPGISGTSIRPDSK 311 (374)
Q Consensus 245 -~~~~~~h~~~v~~~~~-~~~~~~~~s~s~D~~i~lwd~~~~~~~------~~~~~-----~~~~~~~~v~~~~~sp~~~ 311 (374)
......+...+.+... ...+..+++++.||.+.+|+++..... ..... ....+...+.+++|+|+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 264 (342)
T d1yfqa_ 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc
Confidence 2222334445555555 345567899999999999998643211 11110 1123445688999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 312 IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+||+|+.||+|++||+++++.+.++..+ ..+..++|+|+|++||+|+.|.++++|...
T Consensus 265 ~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 265 FLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 9999999999999999999999888643 345567899999999999999999888764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-30 Score=230.09 Aligned_cols=295 Identities=17% Similarity=0.147 Sum_probs=193.2
Q ss_pred ceeEEEEeCCCCEEEEecCCC-cEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGG-ELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~-~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
.+++|+|+|+++.|+.++.+. .|+.||....+ .+..+.+|. ...+.+++|+|..++++++||+.||+||+||+..+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~-~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCC-CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 457889999999998876543 46778765433 244444552 23488899998767789999999999999999765
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
+.... +...... ..... .+.+... .+.+++..++++++..++.+++
T Consensus 98 ~~~~~----~~~~~~~--~~~~~--------------------~~~v~~v--------~~s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 98 KESNS----VEVNVKS--EFQVL--------------------AGPISDI--------SWDFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp GGGTE----EEEEEEE--EEECC--------------------SSCEEEE--------EECTTSSEEEEEECCSSCSEEE
T ss_pred cceee----eeccccc--ccccc--------------------cCcEEEE--------EECCCCCccceeeccccceEEE
Confidence 32210 0000000 00000 0000000 0112333344445556788999
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--ceeeeecCccC
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP 254 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~~~~~h~~~ 254 (374)
|+..+++.+..+..+. ....+ ..+.+. +...+++++.|+.|++||++.... ....+..|...
T Consensus 144 ~~~~~~~~~~~~~~h~----------~~v~~---~~~~~~---~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 207 (325)
T d1pgua1 144 ISWDSGNSLGEVSGHS----------QRINA---CHLKQS---RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207 (325)
T ss_dssp EETTTCCEEEECCSCS----------SCEEE---EEECSS---SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred Eeecccccceeeeecc----------ccccc---cccccc---ccceEEEeecccccccccccccccceecccccCCCCc
Confidence 9999998877764321 11111 123332 223477899999999999864322 12234567788
Q ss_pred eEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC---CCCCEEEEEeCCCeEEEEEccCC
Q 017296 255 VLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR---PDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 255 v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
|.+++|+|+ +..+++++.|+.|++||++..+ . ...+..|...+.++.|+ |++++|++++.|++|+|||+.++
T Consensus 208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~--~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--F--LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 283 (325)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCC--E--EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred cEEeeeccccceeccccccccceeeeeecccc--c--cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence 999999985 5678899999999999986543 2 23344455555555554 68999999999999999999999
Q ss_pred eEEEEecccCC--ceEEEEEeCC-CCEEEEEeCCCcEEEecC
Q 017296 331 SALAILKYHHA--TCNAVSFSSD-CKLMASASEDSTVALWEL 369 (374)
Q Consensus 331 ~~~~~~~~h~~--~v~~v~~sp~-~~~las~s~D~~v~~W~~ 369 (374)
+.+..+..|.. .+..+++.+. +.+|+|+|.|++|++|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 284 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 99888776654 3445555543 348999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-29 Score=232.18 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=116.7
Q ss_pred EEEEEecCCcEEEEeccCCCC----------c-------eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGI----------P-------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST 285 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~----------~-------~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~ 285 (374)
.+++++.||+|++||+..... . ......+...+.+++|++++ .+++|+.|++|++||++...
T Consensus 138 ~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~ 216 (393)
T d1sq9a_ 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR 216 (393)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred EEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc
Confidence 478899999999999853211 0 11112344568899999886 78999999999999996532
Q ss_pred CeEEEE--EeeecCCCCeEEEEECCCCCEEEEEeCCCe---EEEEEccCCeEEEEec-------------ccCCceEEEE
Q 017296 286 GSCVIK--KEINLERPGISGTSIRPDSKIAATAGWDRR---VRIYNYRKGSALAILK-------------YHHATCNAVS 347 (374)
Q Consensus 286 ~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~---v~iwd~~~~~~~~~~~-------------~h~~~v~~v~ 347 (374)
....+. ..+..|...|.+++|+||+++|++|+.|++ |++||+++++.+..+. +|.+.|++++
T Consensus 217 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296 (393)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeec
Confidence 211111 123457788999999999999999999974 9999999988777663 7999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 348 FSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
|+||+++|||+|.|++||+||+..+
T Consensus 297 fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 297 FNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTT
T ss_pred cCCCCCeeEEECCCCEEEEEECCCC
Confidence 9999999999999999999998754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1.3e-28 Score=218.70 Aligned_cols=252 Identities=14% Similarity=0.137 Sum_probs=174.5
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceee--eeeeeeceeeeEEeccCCccccceeeeccc-
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVS--SSWVHSAAHGIVSVATGPSIGLNKVISQGR- 84 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~- 84 (374)
..+...+.+|++.|++++|+|+|++|+||+.|++|+|||+.+++... .+..|. ..+.+++|++ +++.+++++.
T Consensus 48 ~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~v~~s~--d~~~l~~~~~~ 123 (311)
T d1nr0a1 48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDS--ESKRIAAVGEG 123 (311)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECT--TSCEEEEEECC
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc--Cccccccccc--ccccccccccc
Confidence 46778899999999999999999999999999999999998876543 344454 4588888887 5678887765
Q ss_pred -cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 85 -DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 85 -D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
+..+++|++++++.... +. .|...+ .+. .+. +...+
T Consensus 124 ~~~~~~v~~~~~~~~~~~----l~---~h~~~v-----------------~~v------------------~~~-~~~~~ 160 (311)
T d1nr0a1 124 RERFGHVFLFDTGTSNGN----LT---GQARAM-----------------NSV------------------DFK-PSRPF 160 (311)
T ss_dssp SSCSEEEEETTTCCBCBC----CC---CCSSCE-----------------EEE------------------EEC-SSSSC
T ss_pred cccccccccccccccccc----cc---cccccc-----------------ccc------------------ccc-cccee
Confidence 56799999987643211 00 000000 000 011 12345
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++|+.|++|++||+++++.......+. ....++ .+.++ ...+++++.||.|++||++...
T Consensus 161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~----------~~i~~v---~~~p~----~~~l~~~~~d~~v~~~d~~~~~- 222 (311)
T d1nr0a1 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHT----------KFVHSV---RYNPD----GSLFASTGGDGTIVLYNGVDGT- 222 (311)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCS----------SCEEEE---EECTT----SSEEEEEETTSCEEEEETTTCC-
T ss_pred eeccccccccccccccccccccccccccc----------cccccc---ccCcc----cccccccccccccccccccccc-
Confidence 67788899999999999988766654321 111111 23332 2368899999999999997642
Q ss_pred ceee-------eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC-CeEEEEECCCCCEEEE
Q 017296 244 PLTA-------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP-GISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 ~~~~-------~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~s 315 (374)
.... ..+|..+|.+++|++++..+++|+.|++|++||++. +++. ..+..+.. ....+.+.+++.+|++
T Consensus 223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t--~~~~--~~l~~~~~~~~~~~~~~~~~~~l~s 298 (311)
T d1nr0a1 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT--LKVE--KTIPVGTRIEDQQLGIIWTKQALVS 298 (311)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEE--EEEECCSSGGGCEEEEEECSSCEEE
T ss_pred ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC--CcEE--EEEECCCCccceEEEEEecCCEEEE
Confidence 2222 346889999999999999999999999999999864 3332 23333321 1223345555667999
Q ss_pred EeCCCeEEEEEcc
Q 017296 316 AGWDRRVRIYNYR 328 (374)
Q Consensus 316 ~~~dg~v~iwd~~ 328 (374)
++.||.|++||.+
T Consensus 299 ~s~dG~i~~wd~d 311 (311)
T d1nr0a1 299 ISANGFINFVNPE 311 (311)
T ss_dssp EETTCCEEEEETT
T ss_pred EECCCEEEEEeCC
Confidence 9999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-28 Score=221.02 Aligned_cols=243 Identities=17% Similarity=0.250 Sum_probs=173.8
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
....+|.+.|++|+|+|++++|++|+.|++|++||+.... ....+..|. ..+..+.+++ ++..+++++.|+.++
T Consensus 91 ~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~s~~~d~~i~ 166 (337)
T d1gxra_ 91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA--PACYALAISP--DSKVCFSCCSDGNIA 166 (337)
T ss_dssp EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS--SCEEEEEECT--TSSEEEEEETTSCEE
T ss_pred eeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccc--cccccccccc--ccccccccccccccc
Confidence 3456899999999999999999999999999999986543 333444443 3466777776 567899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+|++.++++. .....+.. ...+.. +.+. .. .++.++
T Consensus 167 ~~~~~~~~~~-------~~~~~~~~-----------------~v~~l~------------------~s~~-~~-~~~~~~ 202 (337)
T d1gxra_ 167 VWDLHNQTLV-------RQFQGHTD-----------------GASCID------------------ISND-GT-KLWTGG 202 (337)
T ss_dssp EEETTTTEEE-------EEECCCSS-----------------CEEEEE------------------ECTT-SS-EEEEEE
T ss_pred cccccccccc-------cccccccc-----------------cccccc------------------cccc-cc-cccccc
Confidence 9999876321 00000000 000000 0011 12 345667
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|+.+++||+++++.+..+... ....++ .+.+. ...+++|+.||.|++||++... .....
T Consensus 203 ~d~~v~i~d~~~~~~~~~~~~~-----------~~i~~l---~~~~~----~~~l~~~~~d~~i~i~d~~~~~--~~~~~ 262 (337)
T d1gxra_ 203 LDNTVRSWDLREGRQLQQHDFT-----------SQIFSL---GYCPT----GEWLAVGMESSNVEVLHVNKPD--KYQLH 262 (337)
T ss_dssp TTSEEEEEETTTTEEEEEEECS-----------SCEEEE---EECTT----SSEEEEEETTSCEEEEETTSSC--EEEEC
T ss_pred ccccccccccccceeecccccc-----------cceEEE---EEccc----ccccceeccccccccccccccc--ccccc
Confidence 7899999999999876655321 111221 23322 2368899999999999997643 34567
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
.|..+|.++.|++++..+++++.|+.|++||+.... .... . .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus 263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--~~~~--~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SIFQ--S-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEE--E-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEE--c-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 899999999999999999999999999999987543 3222 2 24567999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.2e-27 Score=213.50 Aligned_cols=254 Identities=22% Similarity=0.331 Sum_probs=176.1
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
...+|...|++|+|+|++++|++|+.|+.|++||...++.+....+|.. .+.++.+.+ ++..+++++.++.+++||
T Consensus 116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~--~v~~~~~~~--~~~~~~~~~~~~~i~~~d 191 (388)
T d1erja_ 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ--DIYSLDYFP--SGDKLVSGSGDRTVRIWD 191 (388)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred cccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccc--ccccccccc--ccccccccccceeeeeee
Confidence 3457889999999999999999999999999999999888877777653 467777766 557899999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
+.+.... ..........+ . .+.+.++. ++++++.|+
T Consensus 192 ~~~~~~~----~~~~~~~~~~~-----------------------------~----------~~~~~~~~-~l~~~~~d~ 227 (388)
T d1erja_ 192 LRTGQCS----LTLSIEDGVTT-----------------------------V----------AVSPGDGK-YIAAGSLDR 227 (388)
T ss_dssp TTTTEEE----EEEECSSCEEE-----------------------------E----------EECSTTCC-EEEEEETTS
T ss_pred ccccccc----ccccccccccc-----------------------------c----------cccCCCCC-eEEEEcCCC
Confidence 9865210 00000000000 0 00011222 456677889
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC---------
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--------- 243 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--------- 243 (374)
.|++||+++++....+...... ...+ .....+ ..+.++ ...+++|+.||.|++||++....
T Consensus 228 ~i~i~~~~~~~~~~~~~~~~~~-~~~h--~~~v~~---l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 297 (388)
T d1erja_ 228 AVRVWDSETGFLVERLDSENES-GTGH--KDSVYS---VVFTRD----GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297 (388)
T ss_dssp CEEEEETTTCCEEEEEC-------CCC--SSCEEE---EEECTT----SSEEEEEETTSEEEEEEC--------------
T ss_pred eEEEeecccCccceeecccccc-ccCC--CCCEEE---EEECCC----CCEEEEEECCCcEEEEeccCCccccccccccc
Confidence 9999999998877665432110 0011 111111 123332 23689999999999999965321
Q ss_pred --ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE------ECCCCCEEEE
Q 017296 244 --PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS------IRPDSKIAAT 315 (374)
Q Consensus 244 --~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~------~sp~~~~l~s 315 (374)
.......|...|.++++++++..+++|+.||+|++||++.. .+. ..+..|...|.+++ |+|++++||+
T Consensus 298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--~~~--~~l~~H~~~V~~~~~~~~~~~spd~~~l~s 373 (388)
T d1erja_ 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--NPL--LMLQGHRNSVISVAVANGSSLGPEYNVFAT 373 (388)
T ss_dssp -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC--CEE--EEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC--cEE--EEEeCCCCCEEEEEEecCcccCCCCCEEEE
Confidence 23345568899999999999999999999999999999754 332 34566778888876 5789999999
Q ss_pred EeCCCeEEEEEcc
Q 017296 316 AGWDRRVRIYNYR 328 (374)
Q Consensus 316 ~~~dg~v~iwd~~ 328 (374)
|+.||+|+||+++
T Consensus 374 ~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 374 GSGDCKARIWKYK 386 (388)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCEEEEEeee
Confidence 9999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.2e-26 Score=201.96 Aligned_cols=258 Identities=19% Similarity=0.307 Sum_probs=186.5
Q ss_pred EEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeecccc
Q 017296 44 IWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPY 123 (374)
Q Consensus 44 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (374)
.|... .....++.+|.. .|.+++|++ ++++|+||+.|++||+||+.++++.. .+..+......+
T Consensus 2 ~w~p~-~~~~~~L~GH~~--~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~----~~~~h~~~V~~~------- 65 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRS--PVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFER----TLKGHTDSVQDI------- 65 (317)
T ss_dssp CCCCC-SSCSCEEECCSS--CEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCE----EECCCSSCEEEE-------
T ss_pred ccCCC-CCccEEEcCCCC--CeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEE----EEeCCCCcEEEE-------
Confidence 46542 333456778864 588999987 56899999999999999998875321 111100000000
Q ss_pred ccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCC
Q 017296 124 ANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKG 203 (374)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (374)
. + .++.. +++++..++.+.+|+....+....+..+ ..
T Consensus 66 -------------~------------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 102 (317)
T d1vyhc1 66 -------------S------------------F-DHSGK-LLASCSADMTIKLWDFQGFECIRTMHGH----------DH 102 (317)
T ss_dssp -------------E------------------E-CTTSS-EEEEEETTSCCCEEETTSSCEEECCCCC----------SS
T ss_pred -------------e------------------e-ecccc-cccccccccccccccccccccccccccc----------cc
Confidence 0 0 01112 3455566788999998877654443321 01
Q ss_pred CcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC
Q 017296 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (374)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~ 283 (374)
...+ ..+.++ ...+++++.|+.+++||+++ ......+.+|...+.++.+++++..+++++.|+.|++|++..
T Consensus 103 ~~~~---~~~~~~----~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 174 (317)
T d1vyhc1 103 NVSS---VSIMPN----GDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174 (317)
T ss_dssp CEEE---EEECSS----SSEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccee---eeccCC----CceEEeeccCcceeEeeccc-ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc
Confidence 1111 123222 23588999999999999986 456777889999999999999999999999999999999875
Q ss_pred CCCeEEEEEeeecCCCCeEEEEECCCC--------------------CEEEEEeCCCeEEEEEccCCeEEEEecccCCce
Q 017296 284 STGSCVIKKEINLERPGISGTSIRPDS--------------------KIAATAGWDRRVRIYNYRKGSALAILKYHHATC 343 (374)
Q Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~sp~~--------------------~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v 343 (374)
... ...+..+...+..++|+|++ .++++++.|++|++||+.+++++.++.+|...|
T Consensus 175 ~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v 250 (317)
T d1vyhc1 175 KEC----KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250 (317)
T ss_dssp CCE----EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred cee----eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCE
Confidence 432 22334455667777777653 478999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 344 NAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 344 ~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+++|+|++++|++++.|+.|++||+..+
T Consensus 251 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 279 (317)
T d1vyhc1 251 RGVLFHSGGKFILSCADDKTLRVWDYKNK 279 (317)
T ss_dssp EEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 99999999999999999999999998654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=8.5e-27 Score=211.80 Aligned_cols=247 Identities=14% Similarity=0.086 Sum_probs=173.5
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.|.+++|++ +++.|++|+.|+.|++||..+++.. .+.....|...+ .+..
T Consensus 9 pIt~~~~s~--dg~~la~~~~~~~i~iw~~~~~~~~-----~~~~l~gH~~~V-----------------~~l~------ 58 (371)
T d1k8kc_ 9 PISCHAWNK--DRTQIAICPNNHEVHIYEKSGNKWV-----QVHELKEHNGQV-----------------TGVD------ 58 (371)
T ss_dssp CCCEEEECT--TSSEEEEECSSSEEEEEEEETTEEE-----EEEEEECCSSCE-----------------EEEE------
T ss_pred CeEEEEECC--CCCEEEEEeCCCEEEEEECCCCCEE-----EEEEecCCCCCE-----------------EEEE------
Confidence 478889987 6789999999999999999765311 111111110000 0000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
+.+ ++++ +++++.|++|+|||+.+++....+... .+ .....+ ..+.|+ + ..
T Consensus 59 ------------fsp-~~~~-l~s~s~D~~i~vWd~~~~~~~~~~~~~------~~--~~~v~~---i~~~p~---~-~~ 109 (371)
T d1k8kc_ 59 ------------WAP-DSNR-IVTCGTDRNAYVWTLKGRTWKPTLVIL------RI--NRAARC---VRWAPN---E-KK 109 (371)
T ss_dssp ------------EET-TTTE-EEEEETTSCEEEEEEETTEEEEEEECC------CC--SSCEEE---EEECTT---S-SE
T ss_pred ------------ECC-CCCE-EEEEECCCeEEEEeecccccccccccc------cc--cccccc---cccccc---c-cc
Confidence 111 2234 456777999999999877543332110 00 111111 134433 2 36
Q ss_pred EEEEecCCcEEEEeccCCCCc---eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe-------------
Q 017296 224 VLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS------------- 287 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~------------- 287 (374)
+++|+.|+.|++|++...... ......|...|.+++|+|++..+++|+.|++|++||+......
T Consensus 110 l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~ 189 (371)
T d1k8kc_ 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189 (371)
T ss_dssp EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred ceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccccc
Confidence 899999999999999764321 2334568899999999999999999999999999998542210
Q ss_pred -EEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 288 -CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 288 -~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
.....+...|...+.+++|+|++++|++++.|++|++||+.+++.+..+..|..+|.+++|+||+++||+|+ |+.+++
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~ 268 (371)
T d1k8kc_ 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVL 268 (371)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEE
T ss_pred ceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEE
Confidence 012234455667799999999999999999999999999999999999999999999999999999888765 788888
Q ss_pred ecCC
Q 017296 367 WELY 370 (374)
Q Consensus 367 W~~~ 370 (374)
|.+.
T Consensus 269 ~~~~ 272 (371)
T d1k8kc_ 269 FTYD 272 (371)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.4e-25 Score=198.48 Aligned_cols=258 Identities=17% Similarity=0.167 Sum_probs=167.8
Q ss_pred CCeEEeecCC-CceeEEEEeC--CCCEEEEecCCCcEEEEeCcccceeeeeeeee------ceeeeEEeccCCcccccee
Q 017296 9 DPVAVLRGHR-ASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRTVSSSWVHS------AAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 9 ~~~~~l~gH~-~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l 79 (374)
.++..+.||. ..|++++|+| ++.+|+||+.||+|+|||...++....+..+. ....+.++++++ +++++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l 130 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRL 130 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEE
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC--CCCcc
Confidence 5677888985 6899999997 56799999999999999987665443333221 123467788876 55666
Q ss_pred eec--cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 80 ISQ--GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 80 ~s~--~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
+++ +.|+.+++|+.++++... .+..+..... +.. +.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~--------------------~~~------------------~~ 168 (325)
T d1pgua1 131 CVVGEGRDNFGVFISWDSGNSLG----EVSGHSQRIN--------------------ACH------------------LK 168 (325)
T ss_dssp EEEECCSSCSEEEEETTTCCEEE----ECCSCSSCEE--------------------EEE------------------EC
T ss_pred ceeeccccceEEEEeecccccce----eeeecccccc--------------------ccc------------------cc
Confidence 654 457889999998764211 0000000000 000 11
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
+...+++++++.|+.+++||+++.+......... .......+ ..|.|+ ....+++++.||.|++||
T Consensus 169 -~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~-------~~~~~v~~---v~~~pd---~~~~l~s~~~d~~i~iwd 234 (325)
T d1pgua1 169 -QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH-------KQGSFVRD---VEFSPD---SGEFVITVGSDRKISCFD 234 (325)
T ss_dssp -SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS-------CTTCCEEE---EEECST---TCCEEEEEETTCCEEEEE
T ss_pred -ccccceEEEeecccccccccccccccceeccccc-------CCCCccEE---eeeccc---cceeccccccccceeeee
Confidence 1223456778889999999999887655543211 11111111 235443 223688999999999999
Q ss_pred ccCCCCceeeeecCccCeEEEEEe---cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEE
Q 017296 238 IRNPGIPLTAMKVHLEPVLCLSID---ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIA 313 (374)
Q Consensus 238 l~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l 313 (374)
+++ ...+..+.+|..++..+.+. +++..+++++.|++|++||++.. +.........+...+..+++.+. ..+|
T Consensus 235 ~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (325)
T d1pgua1 235 GKS-GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS--KCVQKWTLDKQQLGNQQVGVVATGNGRI 311 (325)
T ss_dssp TTT-CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred ecc-ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC--CEEEEEEecCCcccCeEEEEEECCCCEE
Confidence 986 45677888888887666554 56778999999999999999743 43332333333333444444432 3478
Q ss_pred EEEeCCCeEEEEEc
Q 017296 314 ATAGWDRRVRIYNY 327 (374)
Q Consensus 314 ~s~~~dg~v~iwd~ 327 (374)
++++.||+|++||+
T Consensus 312 ~s~s~dg~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCEEEEEEC
Confidence 99999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.4e-25 Score=196.88 Aligned_cols=251 Identities=14% Similarity=0.205 Sum_probs=167.5
Q ss_pred cceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeec-ceeeeeeeeeccccccccc
Q 017296 50 HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQ 128 (374)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 128 (374)
|+....+.+|.. .|.++++++ ++++|+||+.|++|++||+.+++... .. ..|...+
T Consensus 2 g~~~~~~~GH~~--~V~~l~~s~--dg~~l~s~s~Dg~v~vWd~~~~~~~~-------~~~~~h~~~v------------ 58 (299)
T d1nr0a2 2 GSIDQVRYGHNK--AITALSSSA--DGKTLFSADAEGHINSWDISTGISNR-------VFPDVHATMI------------ 58 (299)
T ss_dssp TEEEEEECCCSS--CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEE-------CSSCSCSSCE------------
T ss_pred CccceEcCCCCC--CcEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEE-------EEcCCCCCcE------------
Confidence 445567778864 488999987 67899999999999999998874211 00 0000000
Q ss_pred cCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCccee
Q 017296 129 ANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCM 208 (374)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (374)
.+.. +.++ +. ++ +++.|+.+++|++........ .. ..........++
T Consensus 59 -----~~v~------------------~~~~-g~-~~-~~~~d~~v~~~~~~~~~~~~~-~~------~~~~~~~~~~~~ 105 (299)
T d1nr0a2 59 -----TGIK------------------TTSK-GD-LF-TVSWDDHLKVVPAGGSGVDSS-KA------VANKLSSQPLGL 105 (299)
T ss_dssp -----EEEE------------------ECTT-SC-EE-EEETTTEEEEECSSSSSSCTT-SC------CEEECSSCEEEE
T ss_pred -----EEEE------------------eecc-ce-ee-cccceeeEEEeccCCcccccc-cc------cccccccccccc
Confidence 0000 1112 22 23 344578999999865431100 00 000000111111
Q ss_pred EEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE
Q 017296 209 AVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 288 (374)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~ 288 (374)
.+.++ +. ++++..++.+++|+... .... .....+.++++++++..+++++.|+.|++||++... .
T Consensus 106 ---~~s~~---g~--~~~~~~~~~i~~~~~~~---~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~--~ 170 (299)
T d1nr0a2 106 ---AVSAD---GD--IAVAACYKHIAIYSHGK---LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS--V 170 (299)
T ss_dssp ---EECTT---SS--CEEEEESSEEEEEETTE---EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE--E
T ss_pred ---ccccc---cc--ccccccccccccccccc---cccc--cccccccccccccccccccccccccccccccccccc--c
Confidence 23222 22 44555678999999642 1222 234567889999999999999999999999997542 2
Q ss_pred EEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE---EEecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 289 VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL---AILKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 289 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
. ......|...+.+++|+|++++|++++.|++|++||+.+++.+ ..+.+|...|.+++|+|++++||+|+.|++|+
T Consensus 171 ~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~ 249 (299)
T d1nr0a2 171 S-EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249 (299)
T ss_dssp E-EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred c-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEE
Confidence 1 1122345678999999999999999999999999999877654 34667999999999999999999999999999
Q ss_pred EecCCCC
Q 017296 366 LWELYPP 372 (374)
Q Consensus 366 ~W~~~~~ 372 (374)
+|++..+
T Consensus 250 iwd~~~~ 256 (299)
T d1nr0a2 250 VWNMNKP 256 (299)
T ss_dssp EEETTCT
T ss_pred EEECCCC
Confidence 9998754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-24 Score=199.27 Aligned_cols=145 Identities=13% Similarity=0.247 Sum_probs=110.5
Q ss_pred EEEEEecCCcEEEEeccCCCCce------eeeecCccCeEEEEEecCCCceEEEecCCe---EEEEEcCCCCCeEEEE--
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPL------TAMKVHLEPVLCLSIDESCNGGISGGADQK---IVLYNLDHSTGSCVIK-- 291 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~---i~lwd~~~~~~~~~~~-- 291 (374)
.+++|+.||+|++||+++. .++ ..+.+|..+|++++|+|++..|++||.|++ |++||++.......+.
T Consensus 197 ~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~ 275 (393)
T d1sq9a_ 197 LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 275 (393)
T ss_dssp EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred EEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence 4778888888888888653 222 234579999999999999999999999974 9999997644322221
Q ss_pred -------EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce---------------------
Q 017296 292 -------KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC--------------------- 343 (374)
Q Consensus 292 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v--------------------- 343 (374)
..+..|...|++++|+||+++|+|++.|++|++||+++++++.++.+|.+.|
T Consensus 276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T d1sq9a_ 276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355 (393)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence 1224577889999999999999999999999999999999999999997544
Q ss_pred EEEEEeCCC----------CEEEEEeCCCcEEEec
Q 017296 344 NAVSFSSDC----------KLMASASEDSTVALWE 368 (374)
Q Consensus 344 ~~v~~sp~~----------~~las~s~D~~v~~W~ 368 (374)
+++.|.+++ +.|++++.|+.||+|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 356 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 455555432 3477778888888774
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2.3e-23 Score=184.88 Aligned_cols=251 Identities=20% Similarity=0.300 Sum_probs=176.2
Q ss_pred ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccC
Q 017296 51 RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQAN 130 (374)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (374)
+...++.+|.. .|.+++|++ ++++|+||+.||+|++||+.+++.. ..+.........
T Consensus 46 ~~~~tL~GH~~--~I~~l~~s~--~~~~l~sgs~Dg~v~iWd~~~~~~~----~~~~~~~~~v~~--------------- 102 (340)
T d1tbga_ 46 RTRRTLRGHLA--KIYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNKV----HAIPLRSSWVMT--------------- 102 (340)
T ss_dssp CEEEEECCCSS--CEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEE----EEEECSCSCEEE---------------
T ss_pred eeeEEECCCCC--CEEEEEECC--CCCEEEEEECCCceeeeecccceeE----EEEecccccEEe---------------
Confidence 34456778864 588999987 6689999999999999999876321 011000000000
Q ss_pred CCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCcee----EEeccCccCCCCCcCCCCCcc
Q 017296 131 EPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC----TRLHQNSCGGSPNFSSKGRGM 206 (374)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 206 (374)
.. +. ++.. ++++++.|+.+++|+....... ..+..+ .....
T Consensus 103 -----v~------------------~~-~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 147 (340)
T d1tbga_ 103 -----CA------------------YA-PSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGH----------TGYLS 147 (340)
T ss_dssp -----EE------------------EC-TTSS-EEEEEETTCCEEEEESSSSCSCCCEEEEECCC----------SSCEE
T ss_pred -----eE------------------ee-ccce-eeeeecccceeecccccccccccccceecccc----------ccccc
Confidence 00 11 1122 3556777899999997765422 112110 00111
Q ss_pred eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC
Q 017296 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
+.. ... . ..+.....|.....++.... ........+...+....+.+....+++++.|+.|++||++..
T Consensus 148 ~~~---~~~----~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-- 216 (340)
T d1tbga_ 148 CCR---FLD----D-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-- 216 (340)
T ss_dssp EEE---EEE----T-TEEEEEETTTEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--
T ss_pred ccc---ccc----c-cccccccccccccccccccc-cccccccccceeEeeeccccccceeEEeecCceEEEEECCCC--
Confidence 110 110 1 14667888999999987653 334445567788999999888888999999999999998643
Q ss_pred eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe--cccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL--KYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 287 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
.. ...+..|...|.+++|+|++++|++|+.|++|++||+...+.+..+ ..|...|.+++|+|++++|++|+.|++|
T Consensus 217 ~~--~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i 294 (340)
T d1tbga_ 217 MC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294 (340)
T ss_dssp EE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCE
T ss_pred cE--EEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEE
Confidence 22 2345567788999999999999999999999999999988877665 3566789999999999999999999999
Q ss_pred EEecCCCC
Q 017296 365 ALWELYPP 372 (374)
Q Consensus 365 ~~W~~~~~ 372 (374)
++||+..+
T Consensus 295 ~iwd~~~~ 302 (340)
T d1tbga_ 295 NVWDALKA 302 (340)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99998654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.1e-24 Score=188.86 Aligned_cols=284 Identities=19% Similarity=0.308 Sum_probs=170.2
Q ss_pred EeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccc
Q 017296 45 WDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124 (374)
Q Consensus 45 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (374)
|+..+.++...+.+|... |++ ++++ ++++|+|||.|++||+||+.++++.. .+..+......+.+.. .
T Consensus 1 W~~~~~~~~~~l~GH~~~--V~s-~~~~--~g~~l~sgs~Dg~i~vWd~~~~~~~~----~~~~h~~~V~~v~~~~--~- 68 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDH--VIT-CLQF--CGNRIVSGSDDNTLKVWSAVTGKCLR----TLVGHTGGVWSSQMRD--N- 68 (342)
T ss_dssp HHHSCCCCCEEEECSTTS--CEE-EEEE--ETTEEEEEETTSCEEEEETTTCCEEE----ECCCCSSCEEEEEEET--T-
T ss_pred CCCCCCCcCEEECCcCCc--eEE-EEEE--CCCEEEEEeCCCeEEEEECCCCCEEE----EEeCCCCCEEEEEeCC--C-
Confidence 665566677778888644 433 2333 45899999999999999999875321 1111111111111110 0
Q ss_pred cccccCCCCcc--cccccCceeecCCCCCCCC-CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCC
Q 017296 125 NAKQANEPKDC--YEREVGETVDTDSLCDSKD-DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS 201 (374)
Q Consensus 125 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~ 201 (374)
........... +.......... ....... ...... ......+..|+.+.+|+..+++....+....
T Consensus 69 ~l~s~s~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--------- 137 (342)
T d2ovrb2 69 IIISGSTDRTLKVWNAETGECIHT-LYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHV--------- 137 (342)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCS---------
T ss_pred ccccceecccccccccccccceec-ccccceeEeeeecc-cccccccccceeEEEeecccccceeeeeccc---------
Confidence 00000000000 00000000000 0000000 000000 1123455667888889888877655543211
Q ss_pred CCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEc
Q 017296 202 KGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (374)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~ 281 (374)
..... ... ....++.++.|+.|++||++. ...+..+.+|...+..+.+++ ..+++++.|++|++||+
T Consensus 138 ---~~~~~---~~~----~~~~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~dg~i~~~d~ 204 (342)
T d2ovrb2 138 ---AAVRC---VQY----DGRRVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDV 204 (342)
T ss_dssp ---SCEEE---EEE----CSSCEEEEETTSCEEEEEGGG-TEEEEEECCCSSCEEEEEECS--SEEEEEETTSCEEEEET
T ss_pred ---cccee---ecc----ccceeeeecCCCeEEEeeccc-ceeeEEEcCcccccccccCCC--CEEEEEeCCCeEEEeec
Confidence 01111 101 112478899999999999975 445677788888887777754 57899999999999999
Q ss_pred CCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc---cCCceEEEEEeCCCCEEEEE
Q 017296 282 DHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY---HHATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~v~~sp~~~~las~ 358 (374)
+... . ......|...+.++++++ ++|++++.|++|++||....+....+.. |...+.++++ +++++++|
T Consensus 205 ~~~~--~--~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~ 276 (342)
T d2ovrb2 205 ETGN--C--IHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITS 276 (342)
T ss_dssp TTCC--E--EEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEE
T ss_pred ccce--e--eeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEE
Confidence 7543 2 233455666677766654 6999999999999999998887777765 4556666666 55799999
Q ss_pred eCCCcEEEecCCCC
Q 017296 359 SEDSTVALWELYPP 372 (374)
Q Consensus 359 s~D~~v~~W~~~~~ 372 (374)
+.||+|++||+..+
T Consensus 277 s~Dg~i~iwd~~tg 290 (342)
T d2ovrb2 277 SDDGTVKLWDLKTG 290 (342)
T ss_dssp ETTSEEEEEETTTC
T ss_pred cCCCEEEEEECCCC
Confidence 99999999998754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=6.5e-23 Score=189.46 Aligned_cols=292 Identities=11% Similarity=0.013 Sum_probs=181.0
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecc
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~ 110 (374)
-++++++.|++|+|||+.+++.+.++..|. .+..++|++ |++++++++.|++|++||+.+++... ...++...
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~---~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~~~~--~~~i~~~~ 105 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY---AVHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTK--VAEIKIGI 105 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS---SEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEE--EEEEECCS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEeCCCCEEEEEccCCceeE--EEEEeCCC
Confidence 357899999999999999999998887653 356788887 78899999999999999999874310 01111111
Q ss_pred eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEecc
Q 017296 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (374)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~ 190 (374)
.+.. + . .. ..+. ++++++++++..++++++||.++++....+..
T Consensus 106 ~~~~-~-------~-------------------~s--------~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~ 149 (426)
T d1hzua2 106 EARS-V-------E-------------------SS--------KFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 149 (426)
T ss_dssp EEEE-E-------E-------------------EC--------CSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred CCcc-e-------E-------------------Ee--------eeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeec
Confidence 1100 0 0 00 0111 23456677777889999999999987766543
Q ss_pred CccC-CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEE
Q 017296 191 NSCG-GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGIS 269 (374)
Q Consensus 191 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s 269 (374)
+... ....+........+ ... ..+...+.+....+.+.+++.............+...+..+.+++++..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~i---~~s---~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 223 (426)
T d1hzua2 150 RGMTVDTQTYHPEPRVAAI---IAS---HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223 (426)
T ss_dssp CEECSSSCCEESCCCEEEE---EEC---SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred cCCCccceeecCCCceeEE---EEC---CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe
Confidence 3211 11111111111111 111 1222233344445566666554433223333456677778888887776555
Q ss_pred Ee-cCCeEEEEEcCCCCC-----------------------------------e---------------EEEEEeeecCC
Q 017296 270 GG-ADQKIVLYNLDHSTG-----------------------------------S---------------CVIKKEINLER 298 (374)
Q Consensus 270 ~s-~D~~i~lwd~~~~~~-----------------------------------~---------------~~~~~~~~~~~ 298 (374)
+. .++.+.+++...... . ......+..|.
T Consensus 224 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~ 303 (426)
T d1hzua2 224 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 303 (426)
T ss_dssp EETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS
T ss_pred eeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCC
Confidence 43 344555555432110 0 00112344566
Q ss_pred CCeEEEEECCCCCEEE-------EEeCCCeEEEEEccCCeEEEEe---------cccCCceEEEEEeCCCCEE-EEE---
Q 017296 299 PGISGTSIRPDSKIAA-------TAGWDRRVRIYNYRKGSALAIL---------KYHHATCNAVSFSSDCKLM-ASA--- 358 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~-------s~~~dg~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~sp~~~~l-as~--- 358 (374)
..+..++|+||+++|+ ++..|++|+|||+.+++...++ ..|...|.+++|||||++| +|+
T Consensus 304 ~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~ 383 (426)
T d1hzua2 304 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383 (426)
T ss_dssp SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCC
T ss_pred CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecC
Confidence 6788999999999999 4556899999999988765443 3456679999999999966 443
Q ss_pred -eCCCcEEEecCCC
Q 017296 359 -SEDSTVALWELYP 371 (374)
Q Consensus 359 -s~D~~v~~W~~~~ 371 (374)
+.|+.|+|||...
T Consensus 384 ~~~~~~i~v~D~~T 397 (426)
T d1hzua2 384 KNDSSALVVVDDKT 397 (426)
T ss_dssp TTSCCEEEEEETTT
T ss_pred CCCCCeEEEEECCC
Confidence 4689999999754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.8e-23 Score=176.41 Aligned_cols=244 Identities=18% Similarity=0.290 Sum_probs=162.7
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++.+|++|+++|++|+| ++++|+||+.|++|++|+...+........+. ........ ....++++..++.
T Consensus 45 ~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~ 116 (293)
T d1p22a2 45 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC--EAVLHLRF----NNGMMVTCSKDRS 116 (293)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCC--SCEEEEEC----CTTEEEEEETTSC
T ss_pred CcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccc--cccccccc----cccceeecccccc
Confidence 4688999999999999987 57899999999999999998876654433221 11222221 2357889999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++|++...... ........+. ....... .... ...+
T Consensus 117 ~~~~~~~~~~~~----~~~~~~~~~~-------------------~~v~~~~-------------------~~~~-~~~~ 153 (293)
T d1p22a2 117 IAVWDMASPTDI----TLRRVLVGHR-------------------AAVNVVD-------------------FDDK-YIVS 153 (293)
T ss_dssp EEEEECSSSSCC----EEEEEECCCS-------------------SCEEEEE-------------------EETT-EEEE
T ss_pred eeEeeccccccc----cccccccccc-------------------cccccce-------------------eccc-cccc
Confidence 999999765311 0000000000 0000000 0011 2445
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|+.+++||+++++.+..+.... .. +.. ..+. ...+++++.||+|++||+++ ...+..
T Consensus 154 ~s~d~~i~~~d~~~~~~~~~~~~~~----------~~--v~~-~~~~------~~~l~~~~~dg~i~i~d~~~-~~~~~~ 213 (293)
T d1p22a2 154 ASGDRTIKVWNTSTCEFVRTLNGHK----------RG--IAC-LQYR------DRLVVSGSSDNTIRLWDIEC-GACLRV 213 (293)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCS----------SC--EEE-EEEE------TTEEEEEETTSCEEEEETTT-CCEEEE
T ss_pred ccCCCceeeecCCCCcEEEEEcccc----------cc--ccc-ccCC------CCeEEEecCCCEEEEEeccc-ceeeee
Confidence 6678999999999998777665321 01 111 1111 12589999999999999986 455677
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC-----eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG-----SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
..+|...+.++..+ ...+++++.||.|++||+..... .......+..|...|.+++|+ +++|++++.||+|
T Consensus 214 ~~~~~~~v~~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i 289 (293)
T d1p22a2 214 LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289 (293)
T ss_dssp ECCCSSCEEEEECC--SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEE
T ss_pred ecccceeeeecccc--ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEE
Confidence 77888888776554 45789999999999999743110 011234456677889999885 5689999999999
Q ss_pred EEEE
Q 017296 323 RIYN 326 (374)
Q Consensus 323 ~iwd 326 (374)
++||
T Consensus 290 ~iWD 293 (293)
T d1p22a2 290 LIWD 293 (293)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=8e-23 Score=180.65 Aligned_cols=258 Identities=17% Similarity=0.181 Sum_probs=161.5
Q ss_pred eeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCC
Q 017296 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (374)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (374)
+...++|. ..|.+++|++ ++++|++|+.|++||+||++++... ..+.....|.. +
T Consensus 4 v~~~~~h~--d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~~----~~~~~~~~h~~-----------------~ 58 (342)
T d1yfqa_ 4 VQIEQAPK--DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKN----VDLLQSLRYKH-----------------P 58 (342)
T ss_dssp EECSSCCS--SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTE----EEEEEEEECSS-----------------C
T ss_pred EEcCCCCC--CCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCcc----eEEEEecCCCC-----------------C
Confidence 34444555 4588999987 6789999999999999999875321 11111000000 0
Q ss_pred CcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
..+..+ .+ ....++++|+.|++|++|++.............. ..... ..
T Consensus 59 V~~v~f------------------~~-~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~---------~~~~~-~~-- 107 (342)
T d1yfqa_ 59 LLCCNF------------------ID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEA---------NLGIC-RI-- 107 (342)
T ss_dssp EEEEEE------------------EE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCC---------CSCEE-EE--
T ss_pred EEEEEE------------------eC-CCCCEEEEcccccceeeeeccccccccccccccc---------ccccc-cc--
Confidence 000000 01 1134567788899999999988775554432110 01111 11
Q ss_pred eecCCCCCceEEEEEecCCcEEEEeccCCCCcee---eeecC--ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe
Q 017296 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT---AMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS 287 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~---~~~~h--~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~ 287 (374)
.. .+...+++++.|+++++||++....... ....+ ........+.+....+++++.|+.|++||+......
T Consensus 108 ~~----~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 183 (342)
T d1yfqa_ 108 CK----YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EE----ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred cc----cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc
Confidence 11 1223588899999999999965332111 12222 223445556666778899999999999999765433
Q ss_pred EEEEEeeecCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEEccCCeE---------EE------EecccCCceEEEEEeCC
Q 017296 288 CVIKKEINLERPGISGTSI-RPDSKIAATAGWDRRVRIYNYRKGSA---------LA------ILKYHHATCNAVSFSSD 351 (374)
Q Consensus 288 ~~~~~~~~~~~~~v~~~~~-sp~~~~l~s~~~dg~v~iwd~~~~~~---------~~------~~~~h~~~v~~v~~sp~ 351 (374)
....... ..........+ .+++..+++++.||.+.+|+...... .. ...+|...|++++|+|+
T Consensus 184 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 262 (342)
T d1yfqa_ 184 NGTIEES-GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp CCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred ceeeeec-ccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC
Confidence 2222221 22233455444 45677899999999999998864321 11 12346678999999999
Q ss_pred CCEEEEEeCCCcEEEecCCC
Q 017296 352 CKLMASASEDSTVALWELYP 371 (374)
Q Consensus 352 ~~~las~s~D~~v~~W~~~~ 371 (374)
+++|||||.||+|++||+..
T Consensus 263 ~~~lasg~~Dg~v~vWD~~~ 282 (342)
T d1yfqa_ 263 HKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp TCCEEEEETTSCEEEEETTT
T ss_pred ccEEEEECCCCEEEEEECCC
Confidence 99999999999999999864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=4.2e-24 Score=191.64 Aligned_cols=285 Identities=11% Similarity=0.037 Sum_probs=172.5
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCC--cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGG--ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
+|...|++++|+|||++|++++.+. .|++||..+++.. .+..|. ..+.+++|++ +++++++++.|+.+++|++
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~--~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~ 114 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL--GNVFAMGVDR--NGKFAVVANDRFEIMTVDL 114 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC--CSEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC--ceEEeeeecc--cccccceeccccccccccc
Confidence 7999999999999999988776553 7999999877643 334443 3477888887 6789999999999999999
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE-------
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV------- 166 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 166 (374)
.+++... ...........+ . +.+ +++++++
T Consensus 115 ~~~~~~~----~~~~~~~~~~~~--------------------~------------------~sp-dg~~la~~~~~~~~ 151 (360)
T d1k32a3 115 ETGKPTV----IERSREAMITDF--------------------T------------------ISD-NSRFIAYGFPLKHG 151 (360)
T ss_dssp TTCCEEE----EEECSSSCCCCE--------------------E------------------ECT-TSCEEEEEEEECSS
T ss_pred cccceee----eeecccccccch--------------------h------------------hcc-ceeeeeeecccccc
Confidence 8764210 000000000000 0 011 1223322
Q ss_pred --cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-
Q 017296 167 --AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 243 (374)
Q Consensus 167 --~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~- 243 (374)
.+..++.+++||+.+++........ .... . ..+.++ + ..|++++.++.+++||......
T Consensus 152 ~~~~~~~~~~~v~d~~~~~~~~~~~~~-----------~~~~--~-~~~spd---g-~~l~~~s~~~~~~~~d~~~~~~~ 213 (360)
T d1k32a3 152 ETDGYVMQAIHVYDMEGRKIFAATTEN-----------SHDY--A-PAFDAD---S-KNLYYLSYRSLDPSPDRVVLNFS 213 (360)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECSCSS-----------SBEE--E-EEECTT---S-CEEEEEESCCCCCEECSSSSCEE
T ss_pred ceeeccccceeeeccccCceeeecccc-----------cccc--c-ccccCC---C-CEEEEEeCCCceEccccccccee
Confidence 3445668999999987654332211 0111 1 123332 2 3688899999999999754211
Q ss_pred -----ceeeeecCccCeEEEEEecCCCceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC---CCCCE
Q 017296 244 -----PLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIR---PDSKI 312 (374)
Q Consensus 244 -----~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~ 312 (374)
....+..|...+..+.+.+++..++++..+. ..++|.+....+.... +..+...+..+.+. ++..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 290 (360)
T d1k32a3 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM---IIPLESSILIYSVPVHGEFAAY 290 (360)
T ss_dssp CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE---EEECSSEEEEEECCCCCSHHHH
T ss_pred eccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeE---eeecCCCceEEEEEecCCCeeE
Confidence 0111222333333333333333333333221 2234444333332221 11222334444444 44456
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 313 AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+++++.++.+++||+.+++.. .|.+.|.+++|+|||++|++++.||+|++|++..|+
T Consensus 291 ~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 291 YQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347 (360)
T ss_dssp HHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred EEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence 888999999999999886632 344568999999999999999999999999997764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=1.4e-21 Score=180.50 Aligned_cols=323 Identities=11% Similarity=0.052 Sum_probs=189.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeee--eee-eceeeeEEeccCCccccceee-eccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS--WVH-SAAHGIVSVATGPSIGLNKVI-SQGR 84 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~-s~~~ 84 (374)
+.+.++..|. .+..|+|+|||++|++++.|++|++||+.+++..... ... .+...+.++++++ |+++++ ++..
T Consensus 53 ~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp--DG~~l~v~~~~ 129 (426)
T d1hzua2 53 KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY--EDRYTIAGAYW 129 (426)
T ss_dssp SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC--TTTEEEEEEEE
T ss_pred cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC--CCCEEEEeecC
Confidence 5678888885 5899999999999999999999999999888753322 211 1112344556665 677764 5568
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecc-------e----eeeeeeeeccccccccccCCCCcccc--cccCceeecCCCCC
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNS-------Y----HFCKLSLVKEPYANAKQANEPKDCYE--REVGETVDTDSLCD 151 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 151 (374)
++++++||..++.+.. ...... + ....+..................... ..............
T Consensus 130 ~~~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 130 PPQFAIMDGETLEPKQ----IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp SSEEEEEETTTCCEEE----EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred CCeEEEEcCCccceeE----EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence 9999999998874321 000000 0 00000000000000000000000000 00000000000000
Q ss_pred CC---CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe
Q 017296 152 SK---DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY 228 (374)
Q Consensus 152 ~~---~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 228 (374)
.. .....++.+++.++...+..+.+||+.+++........... ..... .. +.. ...+....++.+
T Consensus 206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~---~~~-~~~~~~~~~~~~ 273 (426)
T d1hzua2 206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP------HPGRG--AN---FVH-PKYGPVWSTSHL 273 (426)
T ss_dssp CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC------CCSCC--EE---EEE-TTTEEEEEEECT
T ss_pred CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc------cccce--ee---eec-CCCCceEEeccC
Confidence 00 01113345667777777889999999999877665432110 00111 10 111 112222334566
Q ss_pred cCCcEEEEeccCCC------CceeeeecCccCeEEEEEecCCCceE-------EEecCCeEEEEEcCCCCCeEEEEE---
Q 017296 229 EDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESCNGGI-------SGGADQKIVLYNLDHSTGSCVIKK--- 292 (374)
Q Consensus 229 ~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~-------s~s~D~~i~lwd~~~~~~~~~~~~--- 292 (374)
.|+.+.+|+..... .....+.+|...+..++|+|++..++ +++.|++|++||++.......+..
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~ 353 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch
Confidence 78899998875421 34566889999999999999999888 456789999999976543222211
Q ss_pred --eeecCCCCeEEEEECCCCCEEEEE-----eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEE
Q 017296 293 --EINLERPGISGTSIRPDSKIAATA-----GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMA 356 (374)
Q Consensus 293 --~~~~~~~~v~~~~~sp~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 356 (374)
....+..++..++|||||++|+.+ +.+++|+|||.++.+..+.+.+++ .++|+|++-+
T Consensus 354 ~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence 112334568899999999977433 358899999999999999998876 4468887643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=7.7e-22 Score=182.44 Aligned_cols=295 Identities=12% Similarity=-0.027 Sum_probs=179.5
Q ss_pred eCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceee
Q 017296 27 HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTI 106 (374)
Q Consensus 27 ~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~ 106 (374)
+++.-++++.+.|++|.|||..+++.+..+..|. .+..++|++ |++++++++.|+++++||+.+++... ...+
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~---~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~--~~~i 101 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTT--VAEI 101 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCE--EEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC---CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceE--EEEE
Confidence 3344456899999999999999999998887653 356778888 78999999999999999998764211 1112
Q ss_pred eecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeE
Q 017296 107 KTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCT 186 (374)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~ 186 (374)
+....+.... .. ..+ .++++++++++..++++++||.++++.+.
T Consensus 102 ~~~~~~~~~~---------------------------~s--------~~~-SpDG~~l~vs~~~~~~v~i~d~~t~~~~~ 145 (432)
T d1qksa2 102 KIGSEARSIE---------------------------TS--------KME-GWEDKYAIAGAYWPPQYVIMDGETLEPKK 145 (432)
T ss_dssp ECCSEEEEEE---------------------------EC--------CST-TCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred ecCCCCCCeE---------------------------Ee--------ccc-CCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence 2211111000 00 011 23446777788889999999999999877
Q ss_pred EeccCcc-CCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCC
Q 017296 187 RLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCN 265 (374)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~ 265 (374)
.+..... .....+.+..+...+ .+. +.+...+++...++.|.+||.............+...+..+.|+|++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v---~~s---~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~ 219 (432)
T d1qksa2 146 IQSTRGMTYDEQEYHPEPRVAAI---LAS---HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 219 (432)
T ss_dssp EEECCEECTTTCCEESCCCEEEE---EEC---SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred eeccCCccccceeccCCCceeEE---EEC---CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC
Confidence 6654321 111122222222111 122 234445677888999999998754322111223556788999999999
Q ss_pred ceEEEec-CCeEEEEEcCCCCCeEE------------------------EE-E--------eee-------cCCCCeEEE
Q 017296 266 GGISGGA-DQKIVLYNLDHSTGSCV------------------------IK-K--------EIN-------LERPGISGT 304 (374)
Q Consensus 266 ~~~s~s~-D~~i~lwd~~~~~~~~~------------------------~~-~--------~~~-------~~~~~v~~~ 304 (374)
.+++++. ++.+.++|.+....... .. . ... .+...+...
T Consensus 220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~ 299 (432)
T d1qksa2 220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 299 (432)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEE
Confidence 8776665 55788888753210000 00 0 000 011234556
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccCCe------------------------EEE--------EecccCCceEEEEEeCCC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRKGS------------------------ALA--------ILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~~~------------------------~~~--------~~~~h~~~v~~v~~sp~~ 352 (374)
.++|++..+++++.+++.++|+..... .++ .+..|...|.+++|||||
T Consensus 300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG 379 (432)
T d1qksa2 300 FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDG 379 (432)
T ss_dssp EECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTS
T ss_pred EEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCC
Confidence 667776666666666666666543210 011 123466789999999999
Q ss_pred CEEEEEe-----CCCcEEEecCC
Q 017296 353 KLMASAS-----EDSTVALWELY 370 (374)
Q Consensus 353 ~~las~s-----~D~~v~~W~~~ 370 (374)
++|+.+. .|+.|+|||..
T Consensus 380 ~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 380 TEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp SEEEEEEECCTTSCCEEEEEETT
T ss_pred CEEEEEEecCCCCCCcEEEEECC
Confidence 9775543 46789998864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=5.3e-21 Score=166.34 Aligned_cols=237 Identities=14% Similarity=0.172 Sum_probs=155.0
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
...++|...|.+++|+++ ..++|++.|+++++|+....+. ......+++.+ ++..+ ..+.++.+.+|
T Consensus 40 ~~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~---------~~~~~~~~~~~--~~~~~-~~~~~~~~~~~ 106 (287)
T d1pgua2 40 SMHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEF---------GSQPKVASANN--DGFTA-VLTNDDDLLIL 106 (287)
T ss_dssp EEECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEEC---------SSCEEEEEECS--SSEEE-EEETTSEEEEE
T ss_pred CCCCCCCCCEEEEEecCC-CeEEEEeecccccccccccccc---------ccceeeeeecc--CCceE-EEeecccceee
Confidence 356799999999999865 5689999999999999754321 11233344443 33344 44556678889
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
+..+++.. +....+.... . + ......+++++..+
T Consensus 107 ~~~~~~~~-------~~~~~~~~~~--------------------~------------------~-~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 107 QSFTGDII-------KSVRLNSPGS--------------------A------------------V-SLSQNYVAVGLEEG 140 (287)
T ss_dssp ETTTCCEE-------EEEECSSCEE--------------------E------------------E-EECSSEEEEEETTT
T ss_pred eccceeee-------eeccccceee--------------------e------------------e-eccCcceeeecccc
Confidence 98765321 0000000000 0 0 01123456666666
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
+.+++|++...+....+... ......++ .+.++ ..++++|+.||.|++||+.+.......+.+|
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~---------~~~~v~~~---~~s~~----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h 204 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTP---------LRAKPSYI---SISPS----ETYIAAGDVMGKILLYDLQSREVKTSRWAFR 204 (287)
T ss_dssp SCEEEEETTEEEEEEECSSC---------CSSCEEEE---EECTT----SSEEEEEETTSCEEEEETTTTEEEECCSCCC
T ss_pred ceeeeeeccccceeeeeeec---------cCCceeEE---EeccC----ccccccccccccccceeeccccccccccccc
Confidence 78999998765543333211 11111111 24332 2368999999999999997644334456789
Q ss_pred ccCeEEEEEecC----------CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 252 LEPVLCLSIDES----------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 252 ~~~v~~~~~~~~----------~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
..+|.+++|+|. ...+++|+.|++|++||++.... . ...+..|...|.+++|+|++ .|++++.|++
T Consensus 205 ~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-~--~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~ 280 (287)
T d1pgua2 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-I--IKALNAHKDGVNNLLWETPS-TLVSSGADAC 280 (287)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-C--EEETTSSTTCEEEEEEEETT-EEEEEETTSC
T ss_pred ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe-E--EEEeCCCCCCeEEEEECCCC-EEEEEECCCe
Confidence 999999999764 34689999999999999865322 1 23345678889999999987 5888999999
Q ss_pred EEEEEc
Q 017296 322 VRIYNY 327 (374)
Q Consensus 322 v~iwd~ 327 (374)
|++|++
T Consensus 281 v~iW~i 286 (287)
T d1pgua2 281 IKRWNV 286 (287)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=4.1e-19 Score=154.68 Aligned_cols=266 Identities=14% Similarity=0.163 Sum_probs=177.7
Q ss_pred EEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccCeEEEEecCCCCCCCCCceeeeecce
Q 017296 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSY 111 (374)
Q Consensus 33 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~ 111 (374)
.++++.|++|.|||+.+++.+..+.... ....+++++ +++++ ++++.+++|++||+.+++... .+....
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~sp--dG~~l~v~~~~~~~i~v~d~~t~~~~~----~~~~~~- 74 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIA----TVPAGS- 74 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEE----EEECSS-
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeC--CCCEEEEEECCCCEEEEEECCCCceee----eeeccc-
Confidence 3577889999999999998877765432 245567777 66665 678889999999998764210 000000
Q ss_pred eeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccC
Q 017296 112 HFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQN 191 (374)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~ 191 (374)
.+.. + .+ ..+..++++++..+..+.+||..+++....+...
T Consensus 75 ---------~~~~-------------------~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (301)
T d1l0qa2 75 ---------SPQG-------------------V----------AV-SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115 (301)
T ss_dssp ---------SEEE-------------------E----------EE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred ---------cccc-------------------c----------cc-ccccccccccccccceeeecccccceeeeecccc
Confidence 0000 0 00 1223456667777889999999998877666432
Q ss_pred ccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe
Q 017296 192 SCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG 271 (374)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s 271 (374)
. ...++ .+.+ .+...++++..++.+.+|+.... .....+. +...+..+.+++++..++.++
T Consensus 116 ~-----------~~~~~---~~~~---dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 116 K-----------SPLGL---ALSP---DGKKLYVTNNGDKTVSVINTVTK-AVINTVS-VGRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp S-----------SEEEE---EECT---TSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CCSSEEEEEECTTSSEEEEEE
T ss_pred c-----------cceEE---Eeec---CCCeeeeeeccccceeeeecccc-ceeeecc-cCCCceEEEeeccccceeeec
Confidence 1 11111 2222 34444667788999999998753 3333333 455678889998888777776
Q ss_pred cC-CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe---CCCeEEEEEccCCeEEEEecccCCceEEEE
Q 017296 272 AD-QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---WDRRVRIYNYRKGSALAILKYHHATCNAVS 347 (374)
Q Consensus 272 ~D-~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 347 (374)
.+ +.+.+|+..... .. .... .......++|+++++.++.++ .+++|++||..+++.+..+..+ ..+..++
T Consensus 177 ~~~~~~~~~~~~~~~--~~--~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va 250 (301)
T d1l0qa2 177 FDSMSISVIDTVTNS--VI--DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA 250 (301)
T ss_dssp TTTTEEEEEETTTTE--EE--EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred cccccccccccccee--ee--eccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEE
Confidence 55 566677664332 11 1122 224567899999999876554 3478999999999988887644 4689999
Q ss_pred EeCCCCEE-EEEeCCCcEEEecCCCC
Q 017296 348 FSSDCKLM-ASASEDSTVALWELYPP 372 (374)
Q Consensus 348 ~sp~~~~l-as~s~D~~v~~W~~~~~ 372 (374)
|+|||++| ++++.|++|++||+..+
T Consensus 251 ~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 251 VTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EeCCCCEEEEEECCCCeEEEEECCCC
Confidence 99999976 68888999999998654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.1e-18 Score=154.11 Aligned_cols=275 Identities=12% Similarity=0.098 Sum_probs=167.3
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccCeEEEEecCCCCCCCCCceeeeec
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKTN 109 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~ 109 (374)
++|++++.|++|+|||+.+++.+..+..+........+++++ |++++ ++++.|++|++||+.+++... .+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t~~~~~----~~~~~ 75 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVTGETLG----RIDLS 75 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTTCCEEE----EEECC
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEEECCCCcEEE----EEecC
Confidence 479999999999999999998888776554334455677877 66766 577889999999999875321 11100
Q ss_pred ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc-----------cCCCeEEEEe
Q 017296 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-----------EQLSEVEIWD 178 (374)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~i~vWd 178 (374)
..... ...... . .+.+ +.++++++. ..+..+.+||
T Consensus 76 ~~~~~----~~~~~~--v---------------------------~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d 121 (337)
T d1pbyb_ 76 TPEER----VKSLFG--A---------------------------ALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp BTTEE----EECTTC--E---------------------------EECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred CCccc----ccceee--E---------------------------EEcC-CCcEEEEeecCCcceeeeccccccceeecc
Confidence 00000 000000 0 0001 112222211 1356899999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc-----
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE----- 253 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~----- 253 (374)
..+++....+...... ..+ .+.+ .+. .+++++ +.+.+||.... .....+..+..
T Consensus 122 ~~~~~~~~~~~~~~~~-----------~~~---~~s~---dg~-~l~~~~--~~~~~~d~~~~-~~~~~~~~~~~~~~~~ 180 (337)
T d1pbyb_ 122 AETLSRRKAFEAPRQI-----------TML---AWAR---DGS-KLYGLG--RDLHVMDPEAG-TLVEDKPIQSWEAETY 180 (337)
T ss_dssp TTTTEEEEEEECCSSC-----------CCE---EECT---TSS-CEEEES--SSEEEEETTTT-EEEEEECSTTTTTTTB
T ss_pred ccCCeEEEeccccCCc-----------eEE---EEcC---CCC-EEEEEc--CCcceeeeecC-cEEEEeecCCccccce
Confidence 9999877766532111 111 1222 222 355554 45788998653 22222211110
Q ss_pred ---------------C---eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 254 ---------------P---VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 254 ---------------~---v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
. ...............++.++.+.+|++.... ... .....+......+.++|++.+++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (337)
T d1pbyb_ 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAM-REVRIMDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEE-EEEEECSSCEEEEEECTTSSEEEE
T ss_pred ecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEE-EEecCCCcceEEEEecccceEEEE
Confidence 0 0000111111122334456678889886442 222 223334456788899999998876
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++||....
T Consensus 258 ~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 258 A--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred c--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 5 6899999999999998875 6678899999999999999999999999998653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=2.7e-19 Score=165.13 Aligned_cols=324 Identities=10% Similarity=-0.016 Sum_probs=162.6
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccccee--eeeee-eeceeeeEEeccCCcccccee-eec
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV--SSSWV-HSAAHGIVSVATGPSIGLNKV-ISQ 82 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~l-~s~ 82 (374)
-.+.+..+..|. .+..++|+|||++|++++.|+++++||+.+++.. ..+.. ..+...+.+..+++ |+++| +++
T Consensus 51 t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp--DG~~l~vs~ 127 (432)
T d1qksa2 51 TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW--EDKYAIAGA 127 (432)
T ss_dssp TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC--TTTEEEEEE
T ss_pred CCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC--CCCEEEEEc
Confidence 346788888884 6899999999999999999999999999877632 22221 11112234445555 77775 678
Q ss_pred cccCeEEEEecCCCCCCCCCceeee-------ecceeeeeeeeeccccccccccCCCCccccc--ccCc---eeecCCCC
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIK-------TNSYHFCKLSLVKEPYANAKQANEPKDCYER--EVGE---TVDTDSLC 150 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~ 150 (374)
+.|++|++||..+++.......... ........+.....................+ .... +.....-.
T Consensus 128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~ 207 (432)
T d1qksa2 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 207 (432)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC
Confidence 8999999999998753210000000 0000000000000000000000000000000 0000 00000000
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCC----CCCcce----------eEEEeeecC
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS----KGRGMC----------MAVQAYLPS 216 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~~ 216 (374)
........++++++++++..++.+.+||.++++....+..........+.. ...... +......+.
T Consensus 208 ~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~ 287 (432)
T d1qksa2 208 FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 287 (432)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence 000111134456777777778899999999887766554321110000000 000000 000000000
Q ss_pred -------------CCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC
Q 017296 217 -------------KSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (374)
Q Consensus 217 -------------~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~ 283 (374)
...+...+++++.++++++|+... +..|......+++ +++..+++++.|+++++|++..
T Consensus 288 ~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~-------~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~ 359 (432)
T d1qksa2 288 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT-------LNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAE 359 (432)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT-------TCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHH
T ss_pred cccccccEEEEEEEcCCCCeEEEEecCCccceeeccc-------CCCCCCeeeEEEE-EechhhcccccCCceEeccccc
Confidence 000111233344444444444321 1112222223333 4555677788888888887632
Q ss_pred CCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE
Q 017296 284 STGSCVIKKEINLERPGISGTSIRPDSKIAATAG-----WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL 354 (374)
Q Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 354 (374)
.. .+..+...+..++|||||++++... .++.|+|||.++.+..+.+.+.. .++|+|++
T Consensus 360 ~~-------~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~~------~~tp~G~~ 422 (432)
T d1qksa2 360 WA-------GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDER------LVTPTGKF 422 (432)
T ss_dssp HH-------TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEE
T ss_pred cc-------ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCCC------ccCCCeeE
Confidence 10 1112345688899999999886554 46899999999999888887643 23566655
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=2.3e-18 Score=152.65 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=166.1
Q ss_pred EEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccCeEEEEecCCCCCCCCC
Q 017296 24 VCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNP 102 (374)
Q Consensus 24 l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~vrvwd~~~~~~~~~~ 102 (374)
++|++++++|++++.|++|.|||+.+++.+.++..+. ......+++++ |++++ ++++.+++|++||+.+++...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~-~~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~~t~~~~~-- 76 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDLDTCKNTF-- 76 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEE--
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC-CCCcceEEECC--CCCEEEEEECCCCcEEEEeCccCeeee--
Confidence 5789999999999999999999999998887765321 12345677776 66665 677789999999998874211
Q ss_pred ceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc-----------ccCC
Q 017296 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA-----------GEQL 171 (374)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~d 171 (374)
.+.... ..... ...+... .+.+++ +++.++ ...+
T Consensus 77 --~~~~~~----------~~~~~-----------~~~~~~v-----------~~s~DG-~~l~v~~~~~~~~~~~~~~~~ 121 (346)
T d1jmxb_ 77 --HANLSS----------VPGEV-----------GRSMYSF-----------AISPDG-KEVYATVNPTQRLNDHYVVKP 121 (346)
T ss_dssp --EEESCC----------STTEE-----------EECSSCE-----------EECTTS-SEEEEEEEEEEECSSCEEECC
T ss_pred --eecccc----------ccccc-----------CCceEEE-----------EEecCC-CEEEEEecCCcceeeeeccCc
Confidence 000000 00000 0000000 011122 222222 1245
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
..+.+||..+++....+.... .+..... . .. ...+ .++.. ++.+.+||+.+. ..+..+..+
T Consensus 122 ~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~-~---~~---~~~~--~~~~~--~~~~~~~~~~~~-~~~~~~~~~ 182 (346)
T d1jmxb_ 122 PRLEVFSTADGLEAKPVRTFP-------MPRQVYL-M---RA---ADDG--SLYVA--GPDIYKMDVKTG-KYTVALPLR 182 (346)
T ss_dssp CEEEEEEGGGGGGBCCSEEEE-------CCSSCCC-E---EE---CTTS--CEEEE--SSSEEEECTTTC-CEEEEECST
T ss_pred ceEEEEecccceeeeEEEeee-------ccCceEE-E---Ee---cCCC--EEEEe--CCcceEEEccCC-CEEEEEecC
Confidence 678999988876433322110 0000000 0 01 1112 13333 356888888653 333333222
Q ss_pred ccCeEEEEEec--------------------------CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 252 LEPVLCLSIDE--------------------------SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 252 ~~~v~~~~~~~--------------------------~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
.. ...+.+.+ ....+.++..+..+.+||+..... . ......+...+..+.
T Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 258 (346)
T d1jmxb_ 183 NW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT--H-TQEFADLTELYFTGL 258 (346)
T ss_dssp TC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE--E-EEEEEECSSCEEEEE
T ss_pred CC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce--E-EEEeecccceeEEEE
Confidence 11 11111111 111223455567788888764332 1 122233455688889
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++|++.+++... ++.|++||..+++.+..+. +...+.+++|+|||++|++++.|+.|++||....
T Consensus 259 ~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 259 RSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323 (346)
T ss_dssp ECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence 999988888665 5689999999999888775 5567999999999999999999999999998653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.79 E-value=2.2e-16 Score=141.85 Aligned_cols=295 Identities=8% Similarity=-0.057 Sum_probs=177.9
Q ss_pred eecCCCceeEEEEeCCCCEEEEe-----cCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec------
Q 017296 14 LRGHRASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ------ 82 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~-----s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~------ 82 (374)
...|..++..++++|+|+.++.. +.++.|.+||..+++.+..+..+.. ..+++++ |+++++.+
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~----~~~a~Sp--DG~~l~va~~~~~~ 89 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL----PNPVAAH--SGSEFALASTSFSR 89 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC----ccEEEcC--CCCEEEEEeecCCc
Confidence 34689999999999999988754 3446799999999998877654432 2466776 67777665
Q ss_pred ----cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 83 ----GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 83 ----~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
..++.|++||..+++... .+........ .. ...+.. ..+.+
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~----~~~~~~~~~~--~~------------------~~~~~~-----------~~~s~ 134 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIA----DIELPDAPRF--DV------------------GPYSWM-----------NANTP 134 (373)
T ss_pred ccccccceEEEEEECCCCcEEE----EEecCCccee--Ee------------------ccCCCc-----------EEEEe
Confidence 346889999999875321 0000000000 00 000000 01123
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
+++..++.....++.+.+|+..+.+........ .+. .+.+ .+...+++.+.|+.+.+||.
T Consensus 135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---~~s~---~g~~~~v~~~~dg~~~~~~~ 194 (373)
T d2madh_ 135 NNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP--------------TCY---HIHP---GAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred CCCcEEEEEEcCCCceEEeeccCCeEEEEeccc--------------eeE---EEec---CCCcEEEEEcCCCeEEEEEc
Confidence 333444444455678889988876654333211 111 1222 23335678899999999998
Q ss_pred cCCCCceeeeecCc------cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee--------ecCCCCeEEE
Q 017296 239 RNPGIPLTAMKVHL------EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI--------NLERPGISGT 304 (374)
Q Consensus 239 ~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~--------~~~~~~v~~~ 304 (374)
.... .......+. .....+.+++.+ .++..+.++.+.+|+.............. .........+
T Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (373)
T d2madh_ 195 AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV 272 (373)
T ss_pred CCce-eeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceee
Confidence 7532 222222211 122334445544 35677789999999886543221111100 0001112334
Q ss_pred EECCCCCE----------EEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCCC
Q 017296 305 SIRPDSKI----------AATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYPP 372 (374)
Q Consensus 305 ~~sp~~~~----------l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~~ 372 (374)
+++|++.. ++....++++.+||..+++.+..+. +...+..++|+|||+ ++++++.|++|++||+..+
T Consensus 273 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence 55555443 4456677899999999999888775 667899999999998 4578999999999998754
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=2.5e-17 Score=146.85 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=91.1
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe----------CC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG----------WD 319 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----------~d 319 (374)
.|...+.+++|+|++..+++++.++.+++|+++..... .....+...+.+++|+||+++|+.++ .+
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 158 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT----VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred CCCceEEeeeecccccccceecccccccccccccccee----eeeecccccccchhhccceeeeeeeccccccceeeccc
Confidence 45666777788888888888888888888888654321 22334556688899999999998543 45
Q ss_pred CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 320 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 320 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.+++||..+++... +..|...+..++|+|||++|++++.|+.+++|+...
T Consensus 159 ~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 159 QAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp EEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred cceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence 579999998877654 445777889999999999999999999999998643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=1.6e-16 Score=140.06 Aligned_cols=272 Identities=9% Similarity=0.029 Sum_probs=160.6
Q ss_pred CCeEEeec--CCCceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeecee---eeEEeccCCccccceeeec
Q 017296 9 DPVAVLRG--HRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAH---GIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~g--H~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~ 82 (374)
+.+.++.. +...+..++|+|||++| ++++.++.|.+||+.+++.+..+..+.... ....+++++ +++.++.+
T Consensus 22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~~ 99 (337)
T d1pbyb_ 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP--DGKTLAIY 99 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT--TSSEEEEE
T ss_pred eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC--CCcEEEEe
Confidence 45555654 34567899999999987 577889999999999998877665543221 123455665 56677766
Q ss_pred cc------------cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 83 GR------------DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 83 ~~------------D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
+. +..+.+||..+++.. ... ..... +.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~---------~~~~~----------------~~--------- 138 (337)
T d1pbyb_ 100 ESPVRLELTHFEVQPTRVALYDAETLSRR-------KAF---------EAPRQ----------------IT--------- 138 (337)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTTTEEE-------EEE---------ECCSS----------------CC---------
T ss_pred ecCCcceeeeccccccceeeccccCCeEE-------Eec---------cccCC----------------ce---------
Confidence 54 345666666554210 000 00000 00
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcc--------eeEEEeeecCCCCCce
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM--------CMAVQAYLPSKSQGFV 222 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 222 (374)
...+.++ ++++++++ +.+.+||..+++....+..........+......+ ......... .... .
T Consensus 139 --~~~~s~d-g~~l~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 210 (337)
T d1pbyb_ 139 --MLAWARD-GSKLYGLG---RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA-RKDI-D 210 (337)
T ss_dssp --CEEECTT-SSCEEEES---SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEE-BTTS-C
T ss_pred --EEEEcCC-CCEEEEEc---CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeee-eecc-c
Confidence 0011122 33444443 35789999998877666543222111111111100 000000000 0000 0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
....++.++.+.+||+.........+..+...+..+.++++...++. .++.|++||+... +.... +. +...+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~--~~~~~--~~-~~~~~~ 283 (337)
T d1pbyb_ 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKN--ASIKR--VP-LPHSYY 283 (337)
T ss_dssp TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE--EESEEEEEETTTT--EEEEE--EE-CSSCCC
T ss_pred eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE--ccccEEEEECCCC--cEEEE--Ec-CCCCEE
Confidence 01223446679999997654444445567778888888888765544 4799999999753 33322 22 234578
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 338 (374)
+++|+|||++|++++.|++|++||..+++.+++++-
T Consensus 284 ~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 999999999999999999999999999999988764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.76 E-value=1e-15 Score=132.65 Aligned_cols=256 Identities=14% Similarity=0.159 Sum_probs=162.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
+.+.++... .....|+|+|+|++| ++++.++.|++||+.+++.+..+..+.. ...+.+++. +...++++..++.
T Consensus 23 ~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 97 (301)
T d1l0qa2 23 KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS---PQGVAVSPD-GKQVYVTNMASST 97 (301)
T ss_dssp EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS---EEEEEECTT-SSEEEEEETTTTE
T ss_pred eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc---ccccccccc-cccccccccccce
Confidence 345555543 456889999999977 5778899999999999988877665532 345566652 2235567778899
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++|+..+++... .+...... . +. .+ .++...++++
T Consensus 98 ~~~~~~~~~~~~~----~~~~~~~~----------~-----------~~------------------~~-~~dg~~~~~~ 133 (301)
T d1l0qa2 98 LSVIDTTSNTVAG----TVKTGKSP----------L-----------GL------------------AL-SPDGKKLYVT 133 (301)
T ss_dssp EEEEETTTTEEEE----EEECSSSE----------E-----------EE------------------EE-CTTSSEEEEE
T ss_pred eeecccccceeee----eccccccc----------e-----------EE------------------Ee-ecCCCeeeee
Confidence 9999998763210 00000000 0 00 01 1233456677
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
+..+..+.+|+..+.+....+.... ....+ .+.+ .+...+++...++.+.+|+... ......
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 195 (301)
T d1l0qa2 134 NNGDKTVSVINTVTKAVINTVSVGR-----------SPKGI---AVTP---DGTKVYVANFDSMSISVIDTVT-NSVIDT 195 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCS-----------SEEEE---EECT---TSSEEEEEETTTTEEEEEETTT-TEEEEE
T ss_pred eccccceeeeeccccceeeecccCC-----------CceEE---Eeec---cccceeeecccccccccccccc-eeeeec
Confidence 7778899999999988766654321 01111 1222 2222334445557777787654 333333
Q ss_pred eecCccCeEEEEEecCCCceEEEe---cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE-EEEeCCCeEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGG---ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA-ATAGWDRRVR 323 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~v~ 323 (374)
.. .......+.+++++..++.++ .+++|++||+... +.. ..+.. ...+..++|+|||++| ++++.|++|+
T Consensus 196 ~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~--~~~--~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~ 269 (301)
T d1l0qa2 196 VK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KIT--ARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVS 269 (301)
T ss_dssp EE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEE--EEEEC-CSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cc-ccCCcceeeccccccccccccccceeeeeeeeecCCC--eEE--EEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEE
Confidence 33 344567788888887766543 3578999998643 332 22222 2458899999999976 5777899999
Q ss_pred EEEccCCeEEEEec
Q 017296 324 IYNYRKGSALAILK 337 (374)
Q Consensus 324 iwd~~~~~~~~~~~ 337 (374)
+||+++++.+++++
T Consensus 270 v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 270 VIDTATNTITATMA 283 (301)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCCeEEEEEe
Confidence 99999999988875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=1e-15 Score=135.31 Aligned_cols=280 Identities=10% Similarity=-0.008 Sum_probs=165.3
Q ss_pred CCeEEee-cCCCceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeece----eeeEEeccCCccccceeeec
Q 017296 9 DPVAVLR-GHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAA----HGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~-gH~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~ 82 (374)
+++.++. .|...+.+|+|+|||++| ++++.++.|++||+.+++.+..+...... .....+++++ |+++++.+
T Consensus 29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~--DG~~l~v~ 106 (346)
T d1jmxb_ 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYAT 106 (346)
T ss_dssp EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEE
T ss_pred CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec--CCCEEEEE
Confidence 4566666 566778999999999986 67778999999999998876554322111 1123455655 56666655
Q ss_pred c------------ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 83 G------------RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 83 ~------------~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
+ .+..+++|+..+++..... .. ...+.. ..
T Consensus 107 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~------------~~~~~~--------~~---------------- 148 (346)
T d1jmxb_ 107 VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--RT------------FPMPRQ--------VY---------------- 148 (346)
T ss_dssp EEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--EE------------EECCSS--------CC----------------
T ss_pred ecCCcceeeeeccCcceEEEEecccceeeeEE--Ee------------eeccCc--------eE----------------
Confidence 4 3566777776654321100 00 000000 00
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcc--------eeEEEeeecCCCCCce
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM--------CMAVQAYLPSKSQGFV 222 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 222 (374)
.....++..+ ++++ ..+.+||+.+++.+..+..........+.+....+ ................
T Consensus 149 ---~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (346)
T d1jmxb_ 149 ---LMRAADDGSL-YVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221 (346)
T ss_dssp ---CEEECTTSCE-EEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred ---EEEecCCCEE-EEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCce
Confidence 0000122222 3332 35899999998887776543322222222211111 0000000000001111
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.+.++..++.+.+||+............|...+..+.+++++..++..+ ++.|.+||+... +... ... ....+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~--~~~~--~~~-~~~~~~ 295 (346)
T d1jmxb_ 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR--KLIK--AAN-LDHTYY 295 (346)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT--EEEE--EEE-CSSCCC
T ss_pred eEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCC--cEEE--EEc-CCCCEE
Confidence 2445666788999999765544455567888888898988777766554 567999998643 3322 222 224588
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA 341 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~ 341 (374)
+++|||||++|++++.|+.|++||.++++.+.+++-+.+
T Consensus 296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 999999999999999999999999999999998875443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=2.3e-16 Score=140.55 Aligned_cols=292 Identities=12% Similarity=-0.008 Sum_probs=174.7
Q ss_pred CceeEEEEeCCCCEEEEe-----cCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee----------cc
Q 017296 19 ASVTDVCFHQTKPILFAG-----TTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS----------QG 83 (374)
Q Consensus 19 ~~V~~l~~~~~~~~l~s~-----s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------~~ 83 (374)
+|+.-.+.+|+++.++.. +.+.+|.|||..+++.+.++..+. ...+++++ |+++++. +.
T Consensus 2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~----~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF----LPNPVVAD--DGSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS----SCEEEECT--TSSCEEEEEEEEEETTEEE
T ss_pred CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC----CCceEEcC--CCCEEEEEeCCCccccccC
Confidence 345555778999988764 346689999999998887765443 22466776 6666654 34
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|+.|++||+.+++... .+.....+ .. .....+... .+.++++..
T Consensus 76 ~d~~v~v~D~~t~~~~~----~~~~~~~~----------~~----------~~~~~~~~~-----------~~s~dg~~~ 120 (355)
T d2bbkh_ 76 RTDYVEVFDPVTLLPTA----DIELPDAP----------RF----------LVGTYPWMT-----------SLTPDGKTL 120 (355)
T ss_dssp EEEEEEEECTTTCCEEE----EEEETTCC----------CC----------CBSCCGGGE-----------EECTTSSEE
T ss_pred CCCEEEEEECCCCCEEE----EEecCCcc----------ee----------ecCCCCceE-----------EEecCCCee
Confidence 58899999999874311 11000000 00 000000000 122334444
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
+++....+..+.+||+.+++.+..+.... ..... . .+....++.+.||...++.......
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~------~~~~~~~~~~~dg~~~~v~~~~~~~ 180 (355)
T d2bbkh_ 121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------CYHIF---P------TAPDTFFMHCRDGSLAKVAFGTEGT 180 (355)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEECCS-----------EEEEE---E------EETTEEEEEETTSCEEEEECCSSSC
T ss_pred EEecCCCCceeeeeecCCCcEeeEEecCC-----------cceEe---e------cCCcceEEEcCCCCEEEEEecCCCe
Confidence 44555667789999999998776654211 00000 0 0111234445566655555432221
Q ss_pred ceee-----eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--------cCCCCeEEEEECCCC
Q 017296 244 PLTA-----MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGISGTSIRPDS 310 (374)
Q Consensus 244 ~~~~-----~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~ 310 (374)
.... ...+...+....+.+....++.++.++.+.+|++.............. ....+...++++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~ 260 (355)
T d2bbkh_ 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260 (355)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCC
Confidence 1100 112334455566766667788999999999999976543222111100 001223458899999
Q ss_pred CEEEEEeCC----------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCCC
Q 017296 311 KIAATAGWD----------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYPP 372 (374)
Q Consensus 311 ~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~~ 372 (374)
..++.+..+ ..|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|++|++||+..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence 987765543 379999999999888776 455688999999998 4677888999999998765
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.7e-14 Score=126.87 Aligned_cols=283 Identities=8% Similarity=0.121 Sum_probs=163.5
Q ss_pred EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceee-eccccCeEEEEecCCCCCCCCCceeeeecc
Q 017296 32 ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (374)
Q Consensus 32 ~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~ 110 (374)
.+++++.|++|+|||+.+...+..+........+..+++++ |+++|+ ++..|+.|++|++..+... ......
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~----~~~~~~- 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGA----LTFAAE- 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCC----EEEEEE-
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCc----EEEeee-
Confidence 46888999999999986544333332222224567788888 677774 5567999999999764321 110000
Q ss_pred eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEecc
Q 017296 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (374)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~ 190 (374)
......+.. + .+ .++++++++++..++.+.+|+............
T Consensus 79 -----~~~~~~p~~-------------------l----------~~-spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~ 123 (333)
T d1ri6a_ 79 -----SALPGSLTH-------------------I----------ST-DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123 (333)
T ss_dssp -----EECSSCCSE-------------------E----------EE-CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred -----cccCCCceE-------------------E----------EE-cCCCCEEeecccCCCceeeeccccccceecccc
Confidence 000000000 0 01 234466777777788999999877654333221
Q ss_pred CccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-----eecCccCeEEEEEecCCC
Q 017296 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-----MKVHLEPVLCLSIDESCN 265 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~-----~~~h~~~v~~~~~~~~~~ 265 (374)
.... .....+ .+.+ .+...+.....+..|.+|+.......... ..........+.|++++.
T Consensus 124 ~~~~--------~~~~~v---~~s~---d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~ 189 (333)
T d1ri6a_ 124 VEGL--------DGCHSA---NISP---DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ 189 (333)
T ss_dssp ECCC--------TTBCCC---EECT---TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred cCCC--------ccceEE---Eeee---cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce
Confidence 1000 000011 1222 22223444556778999998654322111 112344567899988877
Q ss_pred ceEE-EecCCeEEEEEcCCCCCeEEEEEeee------cCCCCeEEEEECCCCCEEE-EEeCCCeEEEEEccCCeEEEEe-
Q 017296 266 GGIS-GGADQKIVLYNLDHSTGSCVIKKEIN------LERPGISGTSIRPDSKIAA-TAGWDRRVRIYNYRKGSALAIL- 336 (374)
Q Consensus 266 ~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~-s~~~dg~v~iwd~~~~~~~~~~- 336 (374)
.++. ....+...+|+............... .........+++|++++++ ++..++++.+|++........+
T Consensus 190 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (333)
T d1ri6a_ 190 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 269 (333)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred eEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE
Confidence 6654 44567888888765443322222211 1123456789999999765 4556789999998765333222
Q ss_pred --cccCCceEEEEEeCCCCEEEEE-eCCCcEEEecCC
Q 017296 337 --KYHHATCNAVSFSSDCKLMASA-SEDSTVALWELY 370 (374)
Q Consensus 337 --~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~~ 370 (374)
..+...+.+++|+|||++|+.+ +.+++|++|+++
T Consensus 270 ~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 270 GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 2234567889999999987665 557899999763
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.67 E-value=1.7e-13 Score=122.68 Aligned_cols=276 Identities=10% Similarity=-0.014 Sum_probs=155.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEec----------CCCcEEEEeCcccceeeeeeeeeceeee-----EEeccCC
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGT----------TGGELRIWDTVQHRTVSSSWVHSAAHGI-----VSVATGP 72 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 72 (374)
.+.+.++.+|..+ .++|+|||++|++++ .++.|.|||..+++.+..+..+...... ..+.+++
T Consensus 57 g~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 134 (373)
T d2madh_ 57 GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP 134 (373)
T ss_pred CCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe
Confidence 3556666666655 689999999998874 4678999999999877665443221100 1122222
Q ss_pred cccccee--eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCC
Q 017296 73 SIGLNKV--ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLC 150 (374)
Q Consensus 73 ~~~~~~l--~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (374)
++..+ .....+..+.+|+...++.. ...... . +.
T Consensus 135 --dg~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~----------~-----------~~-------------- 170 (373)
T d2madh_ 135 --NNADLLFFQFAAGPAVGLVVQGGSSDD-------QLLSSP----------T-----------CY-------------- 170 (373)
T ss_pred --CCCcEEEEEEcCCCceEEeeccCCeEE-------EEeccc----------e-----------eE--------------
Confidence 22222 22233455666665543210 000000 0 00
Q ss_pred CCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC
Q 017296 151 DSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED 230 (374)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d 230 (374)
.+.+++ +.++++...|+++.+||...++........... ......... ... .+...++..+.+
T Consensus 171 ----~~s~~g-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~---~~~~~~~~~~~~ 233 (373)
T d2madh_ 171 ----HIHPGA-PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT------AAQNLLTQP---AQA---NKSGRIVWPVYS 233 (373)
T ss_pred ----EEecCC-CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc------cCccceeee---EEE---CCCceEEEecCC
Confidence 011122 334566677899999999888765544321100 000000000 111 111235566778
Q ss_pred CcEEEEeccCCCC-ceeeeecCcc----------CeEEEEEecCCC----------ceEEEecCCeEEEEEcCCCCCeEE
Q 017296 231 GSILVWDIRNPGI-PLTAMKVHLE----------PVLCLSIDESCN----------GGISGGADQKIVLYNLDHSTGSCV 289 (374)
Q Consensus 231 g~i~iwdl~~~~~-~~~~~~~h~~----------~v~~~~~~~~~~----------~~~s~s~D~~i~lwd~~~~~~~~~ 289 (374)
+.+.+|+...... .......+.. ....+.+++++. .+++...++.+.+||+.... ..
T Consensus 234 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~--~~ 311 (373)
T d2madh_ 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TS 311 (373)
T ss_pred ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc--EE
Confidence 8899998765321 1111111111 122223333322 23456677889999986543 22
Q ss_pred EEEeeecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCC
Q 017296 290 IKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 290 ~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
. .+. +...+..++|+|||+ ++++++.|++|++||+.+++.+..+..+......|++.++
T Consensus 312 ~--~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 312 S--QIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred E--Eec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 1 122 335688999999998 4578899999999999999999999988888888887654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=1.2e-13 Score=122.56 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=81.7
Q ss_pred EEEEEecCCcEEEEeccCCCCc-eeeeecCc----------cCeEEEEEecCCCceEEEec----------CCeEEEEEc
Q 017296 223 NVLAGYEDGSILVWDIRNPGIP-LTAMKVHL----------EPVLCLSIDESCNGGISGGA----------DQKIVLYNL 281 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~-~~~~~~h~----------~~v~~~~~~~~~~~~~s~s~----------D~~i~lwd~ 281 (374)
.++.++.++.+.+|++...... +.....+. .....+.+++++..++..+. ++.|.+||+
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~ 287 (355)
T d2bbkh_ 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 287 (355)
T ss_dssp EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence 4777889999999999754321 11111121 22334666666665554332 247899998
Q ss_pred CCCCCeEEEEEeeecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 282 DHSTGSCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
.... ....... ...+.+++|+|||+ ++++++.|++|++||.++++.+.++.++......+.+.++|
T Consensus 288 ~t~~--~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 288 KTGE--RLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTCC--EEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCCc--EEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 6543 2211111 12477899999998 45677889999999999999999998776666666655543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.4e-12 Score=114.32 Aligned_cols=263 Identities=10% Similarity=0.105 Sum_probs=147.6
Q ss_pred ecCCCceeEEEEeCCCCEEE-EecCCCcEEEEeCcccceeeeeeeeec-eeeeEEeccCCccccceeeecc-ccCeEEEE
Q 017296 15 RGHRASVTDVCFHQTKPILF-AGTTGGELRIWDTVQHRTVSSSWVHSA-AHGIVSVATGPSIGLNKVISQG-RDGTVKCW 91 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~-s~s~D~~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~-~D~~vrvw 91 (374)
..|.+.|..|+|+|||++|+ ++..|+.|++|++...........+.. ......+++++ +++++++++ .++++++|
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~ 110 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH--QGQFVFVGSYNAGNVSVT 110 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT--TSSEEEEEETTTTEEEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC--CCCEEeecccCCCceeee
Confidence 36889999999999999885 555689999999876554333333321 12234566776 677777766 57899999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
+...+... .. ...... .. .... ..+ .++.+++++....+
T Consensus 111 ~~~~~~~~-----~~---------~~~~~~-~~-------~~~~------------------v~~-s~d~~~~~~~~~~~ 149 (333)
T d1ri6a_ 111 RLEDGLPV-----GV---------VDVVEG-LD-------GCHS------------------ANI-SPDNRTLWVPALKQ 149 (333)
T ss_dssp EEETTEEE-----EE---------EEEECC-CT-------TBCC------------------CEE-CTTSSEEEEEEGGG
T ss_pred ccccccce-----ec---------ccccCC-Cc-------cceE------------------EEe-eecceeeecccccc
Confidence 98754210 00 000000 00 0000 001 12334556666667
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee---e
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA---M 248 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~---~ 248 (374)
..+.+|+...................+. .... ..+.+ .+...+.+....+...+|++......... .
T Consensus 150 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~----~p~~---i~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 219 (333)
T d1ri6a_ 150 DRICLFTVSDDGHLVAQDPAEVTTVEGA----GPRH---MVFHP---NEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 219 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTC----CEEE---EEECT---TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred ceeeEEEeccCCcceeeeceeeeeecCC----CccE---EEEec---cceeEEeeccccCceEEEeecccccceeeeeee
Confidence 7899999877543322211100000000 0011 11222 22223455667778888887543222111 1
Q ss_pred e------cCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe-CCC
Q 017296 249 K------VHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG-WDR 320 (374)
Q Consensus 249 ~------~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg 320 (374)
. ........+.+++++..++ .+..++++.+|+++..+......... ........++|+|||++|++++ .++
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~a~spDGk~l~va~~~~~ 298 (333)
T d1ri6a_ 220 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGKYLIAAGQKSH 298 (333)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-CCCCCeeEEEEeCCCCEEEEEECCCC
Confidence 1 1223456677888877554 45668899999997655443332222 2234567899999999887665 468
Q ss_pred eEEEEEc--cCCe
Q 017296 321 RVRIYNY--RKGS 331 (374)
Q Consensus 321 ~v~iwd~--~~~~ 331 (374)
+|++|++ ++|+
T Consensus 299 ~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 299 HISVYEIVGEQGL 311 (333)
T ss_dssp EEEEEEEETTTTE
T ss_pred eEEEEEEECCCCc
Confidence 9999955 5554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=2.2e-13 Score=122.16 Aligned_cols=291 Identities=10% Similarity=-0.032 Sum_probs=166.1
Q ss_pred CCCceeEEEEeCCCCE---EEEecCCCc--EEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee----------
Q 017296 17 HRASVTDVCFHQTKPI---LFAGTTGGE--LRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS---------- 81 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~---l~s~s~D~~--v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s---------- 81 (374)
+.++...++..++++. .+++..+++ +.+||..+++.+..+..+... .+++++ +++.++.
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~----~~a~sp--Dg~~i~~~~~~~~~~~~ 91 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS----LAVAGH--SGSDFALASTSFARSAK 91 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC----EEEECT--TSSCEEEEEEEETTTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC----cceECC--CCCEEEEEcccCccccc
Confidence 4555666677888874 344566665 666699998887766554321 245555 4555443
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
|+.|++|++||..+++... .+.. +... .......+.. ..+.+ ++
T Consensus 92 g~~d~~v~v~D~~t~~~~~----~i~~-------------p~~~-------~~~~g~~p~~-----------~a~Sp-DG 135 (368)
T d1mdah_ 92 GKRTDYVEVFDPVTFLPIA----DIEL-------------PDAP-------RFSVGPRVHI-----------IGNCA-SS 135 (368)
T ss_dssp SSEEEEEEEECTTTCCEEE----EEEE-------------TTSC-------SCCBSCCTTS-----------EEECT-TS
T ss_pred cccCCeEEEEECCCCcEee----eecC-------------Cccc-------eecccCCccc-----------eEECC-CC
Confidence 4568999999998874311 1000 0000 0000000000 01223 34
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
++++++...++.+.+||+.+++.+..+..+.+.. .. + .+...+++.+.||.+.++++...
T Consensus 136 k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------~~-----~---~~~~~~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH------------IH-----P---GAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC------------CE-----E---EETTEEECCCCTTSCEEEECCSS
T ss_pred CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce------------Ec-----c---CCCceEEEEcCCCCEEEEEecCC
Confidence 5555666667899999999998777664321110 00 0 11124667788999999988654
Q ss_pred CCceee-----eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--------cCCCCeEEEEECC
Q 017296 242 GIPLTA-----MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--------LERPGISGTSIRP 308 (374)
Q Consensus 242 ~~~~~~-----~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp 308 (374)
...... ...+...+....+++++. +.....+.+.++++.............. ....+...++++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~ 273 (368)
T d1mdah_ 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGM--LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCEEETTTTE--EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred ceeeeeeecccccccccceeecccccCcE--EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence 332211 122333344455555543 3334456666666654332211110000 0001234578899
Q ss_pred CCCEEEEEeCC---------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCCC
Q 017296 309 DSKIAATAGWD---------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWELYPP 372 (374)
Q Consensus 309 ~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~~ 372 (374)
++..+.....+ .+|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|++|++||...+
T Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence 88876544322 359999999999888776 456788999999997 3577888999999998653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=1.7e-10 Score=102.80 Aligned_cols=271 Identities=10% Similarity=0.020 Sum_probs=141.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEe----------cCCCcEEEEeCcccceeeeeeeeecee-----eeEEeccCC
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAG----------TTGGELRIWDTVQHRTVSSSWVHSAAH-----GIVSVATGP 72 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~----------s~D~~v~vWd~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 72 (374)
.+++.++.+|..+ .++|+|||+.|+.+ +.|++|.+||..+++.+..+..+.... .-..+++++
T Consensus 56 ~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp 133 (368)
T d1mdah_ 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred CcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC
Confidence 3566677777765 48999999988864 357889999999988776654432110 112345666
Q ss_pred ccccceeeec-cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCC
Q 017296 73 SIGLNKVISQ-GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCD 151 (374)
Q Consensus 73 ~~~~~~l~s~-~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (374)
|+++++.+ ..++++.+||+.+++.. .....+.+. .
T Consensus 134 --DGk~l~va~~~~~~v~~~d~~~~~~~-------~~~~~~~~~---------------------~-------------- 169 (368)
T d1mdah_ 134 --SSACLLFFLFGSSAAAGLSVPGASDD-------QLTKSASCF---------------------H-------------- 169 (368)
T ss_dssp --TSSCEEEEECSSSCEEEEEETTTEEE-------EEEECSSCC---------------------C--------------
T ss_pred --CCCEEEEEeCCCCeEEEEECCCCcEe-------EEeeccCcc---------------------e--------------
Confidence 67777655 46799999999876321 000000000 0
Q ss_pred CCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC
Q 017296 152 SKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (374)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg 231 (374)
..+.+ ....++.+.|+++.+|++..+........... +..... ..... .+. ..+ .+....++
T Consensus 170 ----~~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~-~~~---~~g---~~~~~~~~ 231 (368)
T d1mdah_ 170 ----IHPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQC-----TGAQNC-SSQAA-QAN---YPG---MLVWAVAS 231 (368)
T ss_dssp ----CEEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCS-----CTTSCB-CSCCE-EET---TTT---EEEECBSS
T ss_pred ----EccCC-CceEEEEcCCCCEEEEEecCCceeeeeeeccc-----cccccc-ceeec-ccc---cCc---EEEEecCC
Confidence 00011 11234556677888887765543222211100 000000 00000 010 011 12223345
Q ss_pred cEEEEeccCCCCcee-eeec----------CccCeEEEEEecCCCceEEEec---------CCeEEEEEcCCCCCeEEEE
Q 017296 232 SILVWDIRNPGIPLT-AMKV----------HLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~-~~~~----------h~~~v~~~~~~~~~~~~~s~s~---------D~~i~lwd~~~~~~~~~~~ 291 (374)
.+.++++........ .... .......+++++++..++.... ...|.+||.... +....
T Consensus 232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~ 309 (368)
T d1mdah_ 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--QTSGP 309 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--CEEEC
T ss_pred CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC--cEeEE
Confidence 555555543211100 0000 1112233556665554433211 235888887644 32221
Q ss_pred EeeecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEE
Q 017296 292 KEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSF 348 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~ 348 (374)
... ...+.+++|+|||+ +++++..|++|++||..+++.+..++-.. ....|++
T Consensus 310 ~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~-~P~~l~~ 364 (368)
T d1mdah_ 310 ISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSV 364 (368)
T ss_dssp CEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEEC
T ss_pred ecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC-CCCEEEE
Confidence 111 12477899999997 34677789999999999999998887443 2344444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.05 E-value=3.2e-09 Score=97.60 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=58.6
Q ss_pred eecCCCceeEEEEeCCCCEEEEecC---------CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTT---------GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~---------D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|.+|...|.++.|||||++|+.++. ++.+.+||+.+++. ..+..+. ..+....|+| |+++++.. .
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~--~~~~~~~~SP--DG~~ia~~-~ 130 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIP--NNTQWVTWSP--VGHKLAYV-W 130 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCC--TTEEEEEECS--STTCEEEE-E
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCC--cccccccccc--CcceeeEe-e
Confidence 3456688999999999999887753 56788999988764 3444443 3466778887 67888774 5
Q ss_pred cCeEEEEecCCCC
Q 017296 85 DGTVKCWDIENGG 97 (374)
Q Consensus 85 D~~vrvwd~~~~~ 97 (374)
|..+.+|+..+++
T Consensus 131 ~~~l~~~~~~~g~ 143 (470)
T d2bgra1 131 NNDIYVKIEPNLP 143 (470)
T ss_dssp TTEEEEESSTTSC
T ss_pred cccceEEECCCCc
Confidence 7789999998874
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.00 E-value=7.4e-09 Score=93.04 Aligned_cols=127 Identities=15% Similarity=-0.007 Sum_probs=84.0
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCC----C----eEEEEEeeecCCCC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHST----G----SCVIKKEINLERPG 300 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~----~----~~~~~~~~~~~~~~ 300 (374)
++.+.+++... ...+..+..... ...+.++|++.++ +++..|++|.+||++... + ......+.. ...+
T Consensus 237 ~~v~vvd~~~~-~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~-~glg 313 (441)
T d1qnia2 237 SKVPVVDGRGE-SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE-LGLG 313 (441)
T ss_dssp CCCCEEECSSS-CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB-CCSC
T ss_pred CCcEEEEcccC-CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc-cccC
Confidence 55666666543 223444444443 4668899999976 567789999999985311 0 001111111 1123
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCC----------eEEEEe-----cccCCceEEEEEeCCCCEEEEEe
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKG----------SALAIL-----KYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~-----~~h~~~v~~v~~sp~~~~las~s 359 (374)
....+|.++|....|...|..|..|++... ..+..+ .+|...+.+..++|||++|++++
T Consensus 314 plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 456789999988899999999999998521 233334 46777777788999999999993
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.87 E-value=8e-08 Score=86.18 Aligned_cols=201 Identities=9% Similarity=0.085 Sum_probs=118.0
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCC---------------CCCcceeEEEeeecCCCCCceEEEE
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSS---------------KGRGMCMAVQAYLPSKSQGFVNVLA 226 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (374)
-|.+++++++++|++||+.+.+.+..++.-......++.. .+....-. ..+..-..+|+..+++
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~-~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPH-ISMTDGRYDGKYLFIN 89 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCE-EEEETTEEEEEEEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCC-cceecccCCCCEEEEE
Confidence 3668888999999999999999887774310000000000 00000000 0111111234444566
Q ss_pred EecCCcEEEEeccCCCCceeeee-cCccCeEEEEEecCCCce-EEEecCCeE------------------EEEEcCCCCC
Q 017296 227 GYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGG-ISGGADQKI------------------VLYNLDHSTG 286 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-~s~s~D~~i------------------~lwd~~~~~~ 286 (374)
...++.|.++|+++.. ....+. .+...+..+.|+++++.. +.+..+..+ ..+|.+...
T Consensus 90 d~~~~rVavIDl~t~k-~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~- 167 (441)
T d1qnia2 90 DKANTRVARIRLDIMK-TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD- 167 (441)
T ss_dssp ETTTTEEEEEETTTTE-EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS-
T ss_pred cCCCCEEEEEECCCCc-EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce-
Confidence 7788999999997632 222222 356678889998877653 333333333 234443322
Q ss_pred eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC-----------------------------------------CeEEEE
Q 017296 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWD-----------------------------------------RRVRIY 325 (374)
Q Consensus 287 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-----------------------------------------g~v~iw 325 (374)
... ++... .....+.|+|||+++++++.+ +.+.++
T Consensus 168 -v~~--qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd 243 (441)
T d1qnia2 168 -VAW--QVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD 243 (441)
T ss_dssp -EEE--EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred -eeE--EEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence 111 11111 246678999999998887754 334444
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
+....+.+..+..+. ....++++|||+++ +++..|++|.+||+.
T Consensus 244 ~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 244 GRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp CSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred cccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 444445556666544 46778999999965 678999999999974
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.85 E-value=3.4e-09 Score=97.49 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=97.6
Q ss_pred ecCCcEEEEeccCCCCcee-----eeecCccCeEEEEEecCCCceEEEec---------CCeEEEEEcCCCCCeEEEEEe
Q 017296 228 YEDGSILVWDIRNPGIPLT-----AMKVHLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~s~s~---------D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.+|+.|.+||+.+... .. .+..|...|.++.|+|++..++.++. ++.+.+||++... ...
T Consensus 33 ~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-----~~~ 106 (470)
T d2bgra1 33 KQENNILVFNAEYGNS-SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-----LIT 106 (470)
T ss_dssp ESSSCEEEEETTTCCE-EEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-----ECC
T ss_pred EcCCcEEEEECCCCCE-EEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-----ccc
Confidence 4578899999986432 22 23445678999999999999887753 5778899997542 122
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc------------------CCceEEEEEeCCCCEE
Q 017296 294 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH------------------HATCNAVSFSSDCKLM 355 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h------------------~~~v~~v~~sp~~~~l 355 (374)
+..+...+..+.|||||++||.. .++.+.+|+..+++.......+ .+....+.|||||++|
T Consensus 107 l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i 185 (470)
T d2bgra1 107 EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (470)
T ss_dssp SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcc
Confidence 34455678999999999999975 5789999999888765433222 1234557899999999
Q ss_pred EEEeCCCc-EEEecC
Q 017296 356 ASASEDST-VALWEL 369 (374)
Q Consensus 356 as~s~D~~-v~~W~~ 369 (374)
|+.+.|.+ |+.|.+
T Consensus 186 a~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 186 AYAQFNDTEVPLIEY 200 (470)
T ss_dssp EEEEEECTTCCEEEE
T ss_pred ceeEecCCcCceEEE
Confidence 99876655 665543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.71 E-value=2.3e-05 Score=66.02 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=82.4
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEccC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DRRVRIYNYRK 329 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~ 329 (374)
+......+++++++..+++....+.|.+||.+. .................+++.|+|+++++-.. +++|.+|+. +
T Consensus 155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G---~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~ 230 (279)
T d1q7fa_ 155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-D 230 (279)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred cccccceeeeccceeEEeeeccccceeeeecCC---ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-C
Confidence 455677788888877777777888999998753 22221111122345778999999998776544 557999985 6
Q ss_pred CeEEEEeccc--CCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 330 GSALAILKYH--HATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 330 ~~~~~~~~~h--~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
|+.+.++... ......|++.|||.++++ +.+..|++|.++.
T Consensus 231 G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 231 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 273 (279)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeee
Confidence 8877776433 346889999999986665 5799999998854
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.55 E-value=0.00014 Score=63.67 Aligned_cols=152 Identities=13% Similarity=0.033 Sum_probs=91.4
Q ss_pred CceEEEEEecCCcEEEEeccCCCCce--eee--ecCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEE-Ee
Q 017296 220 GFVNVLAGYEDGSILVWDIRNPGIPL--TAM--KVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIK-KE 293 (374)
Q Consensus 220 ~~~~~~~gs~dg~i~iwdl~~~~~~~--~~~--~~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~-~~ 293 (374)
+...+++......|.+|++...+... ... .......+.+.|+|++..++ +...+++|.+|+++......... ..
T Consensus 156 G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~ 235 (365)
T d1jofa_ 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeee
Confidence 33334444556688888875433211 111 12345678899999988764 55568999999997654432211 11
Q ss_pred eec--------------CCCCeEEEEECCCCCEEEEEeC------CCeEEEEEccCCeEEE---Ee---cccCCceEEEE
Q 017296 294 INL--------------ERPGISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALA---IL---KYHHATCNAVS 347 (374)
Q Consensus 294 ~~~--------------~~~~v~~~~~sp~~~~l~s~~~------dg~v~iwd~~~~~~~~---~~---~~h~~~v~~v~ 347 (374)
... .......+.++|||++|+++.. ...|..|++.....+. .+ .........++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~ 315 (365)
T d1jofa_ 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS 315 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred eccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEE
Confidence 110 0112457899999999876642 2347778775432221 11 11224567789
Q ss_pred EeC-CCCEEEE-EeCCCcEEEecCCC
Q 017296 348 FSS-DCKLMAS-ASEDSTVALWELYP 371 (374)
Q Consensus 348 ~sp-~~~~las-~s~D~~v~~W~~~~ 371 (374)
++| +|++|+. ...+++|.+|++..
T Consensus 316 ~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 316 PCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 998 8996654 57889999998743
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.50 E-value=8.8e-05 Score=63.05 Aligned_cols=242 Identities=10% Similarity=-0.015 Sum_probs=129.7
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~ 99 (374)
.+..++++|+|+++++...+++|..||...... .+. .......++++++ +++.+++...++.+..|+......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~--~~~~~~~gla~~~--dG~l~v~~~~~~~~~~~~~~~~~~- 101 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHA--TVEGKVSGLAFTS--NGDLVATGWNADSIPVVSLVKSDG- 101 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEE--ECSSEEEEEEECT--TSCEEEEEECTTSCEEEEEECTTS-
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEE--cCCCCcceEEEcC--CCCeEEEecCCceEEEEEeccccc-
Confidence 478899999999999999999999999653322 221 2224466777877 567788887788888888754321
Q ss_pred CCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEec
Q 017296 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~ 179 (374)
.... .. ... .. .. ++... + ..+.. +.++.+.++.+..+|.
T Consensus 102 ---~~~~------~~---~~~--~~--------~~-----~n~i~-----------~-~~~g~-~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 102 ---TVET------LL---TLP--DA--------IF-----LNGIT-----------P-LSDTQ-YLTADSYRGAIWLIDV 141 (302)
T ss_dssp ---CEEE------EE---ECT--TC--------SC-----EEEEE-----------E-SSSSE-EEEEETTTTEEEEEET
T ss_pred ---ceee------cc---ccC--Cc--------cc-----cceeE-----------E-ccCCC-EEeeccccccceeeec
Confidence 0000 00 000 00 00 00000 0 11222 3334445567777787
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee-eeecCccCeEEE
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AMKVHLEPVLCL 258 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~-~~~~h~~~v~~~ 258 (374)
.++.....+............. ..... .+..+ +...+++.+..+.|..+++........ ...........+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~--~~~~n---gi~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgi 213 (302)
T d2p4oa1 142 VQPSGSIWLEHPMLARSNSESV--FPAAN---GLKRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDF 213 (302)
T ss_dssp TTTEEEEEEECGGGSCSSTTCC--SCSEE---EEEEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSE
T ss_pred cCCcceeEecCCccceeeccCc--ccccc---ccccc---CCceeeecCCCCeEEeccccccccccccccccCCCCCcce
Confidence 7765433322211100000000 00000 11111 223466778889999888864322110 111123345678
Q ss_pred EEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE---CCCCCEEEEEeCC
Q 017296 259 SIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI---RPDSKIAATAGWD 319 (374)
Q Consensus 259 ~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~---sp~~~~l~s~~~d 319 (374)
++++++..+++...++.|..++.+. .............+.++++| +||++.|..++..
T Consensus 214 a~d~dG~l~va~~~~~~V~~i~p~G---~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 214 AFDVEGNLYGATHIYNSVVRIAPDR---STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTTC---CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EECCCCCEEEEEcCCCcEEEECCCC---CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 9999998767777788999987643 22222222223346789999 6788877655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.45 E-value=0.00033 Score=59.76 Aligned_cols=116 Identities=12% Similarity=0.175 Sum_probs=78.9
Q ss_pred eEEEEEecCCC-----ceEEEecCCeEEEEEcCCCCCeEEEEE---eeec-CCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 255 VLCLSIDESCN-----GGISGGADQKIVLYNLDHSTGSCVIKK---EINL-ERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 255 v~~~~~~~~~~-----~~~s~s~D~~i~lwd~~~~~~~~~~~~---~~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
-+.++++++.. .+++.+..+.|..++++.. +...... .+.. .......+++..+|++.++....+.|.+|
T Consensus 174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~-g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~ 252 (314)
T d1pjxa_ 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred eeeeEECCCCCcceeEEEEEeecccceEEeeccCc-cccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence 35566765443 2345567788888887532 2222111 1111 11235679999999988887788999999
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCC
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYP 371 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~ 371 (374)
|.+.++....+..+...+.+++|.||++ +.+|.+.++.|...++..
T Consensus 253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 9887776666766667889999999997 567778888887766643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.28 E-value=0.00034 Score=57.80 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=76.9
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
....+++++++..+++...++.|..++.+... ... . ..........+++.++++++++-...+.|..++..... .
T Consensus 141 ~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~--~-~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~ 215 (260)
T d1rwia_ 141 DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVV--L-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-S 215 (260)
T ss_dssp SCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-EEE--C-CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-C
T ss_pred CcceeeecCCCCEeeeccccccccccccccce-eee--e-eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-E
Confidence 34567888887766777777888888875432 111 1 11122346789999999988888778899888764433 2
Q ss_pred EEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 334 AILK-YHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 334 ~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
..+. ........|++.++|.++++-..+..|+..+-..+
T Consensus 216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~~ 255 (260)
T d1rwia_ 216 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 255 (260)
T ss_dssp EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCCC
Confidence 2232 23356789999999998888777777776665444
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.04 E-value=0.0013 Score=54.77 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=111.7
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
+.++-..++.|++||.. ++.+..+............ ...+ .+. ...+...++..+.++.|..++.. +.
T Consensus 36 i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~------p~~~-~~~--~~~~~~~~~~~~~~~~i~~~~~~--g~ 103 (279)
T d1q7fa_ 36 IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLY------PNRV-AVV--RNSGDIIVTERSPTHQIQIYNQY--GQ 103 (279)
T ss_dssp EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSS------EEEE-EEE--TTTTEEEEEECGGGCEEEEECTT--SC
T ss_pred EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccc------cccc-ccc--ccccccceeccCCcccccccccc--cc
Confidence 34444556789999965 6655555322111000000 0000 011 11222223334556677777753 33
Q ss_pred ceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 244 PLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 244 ~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
....+. ........+++++++..+++....+.+.+++.+ +..........+......+++.+++.++++....+.|
T Consensus 104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC---CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 333332 234567788898888766766666777777654 2222222222334457789999999988888889999
Q ss_pred EEEEccCCeEEEEec--ccCCceEEEEEeCCCCEEEEEe-CCCcEEEec
Q 017296 323 RIYNYRKGSALAILK--YHHATCNAVSFSSDCKLMASAS-EDSTVALWE 368 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~s-~D~~v~~W~ 368 (374)
++||. +++.+.++. +.......|++.|+|+++++-+ .+..|.+++
T Consensus 181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~ 228 (279)
T d1q7fa_ 181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 228 (279)
T ss_dssp EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence 99997 567776663 3455688899999999777644 345688775
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.0039 Score=50.92 Aligned_cols=98 Identities=8% Similarity=-0.037 Sum_probs=59.8
Q ss_pred eecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC---CCeEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW---DRRVR 323 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~v~ 323 (374)
+..+........+++++..++..+. .+...+|..+...+.... ...........|||||+.|+-.+. ...+.
T Consensus 166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~ 241 (269)
T d2hqsa1 166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLN 241 (269)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----CCCSSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred eecccccccccccccccceeEEEeecCCceeeeEeecccccceE----eecCccccceEECCCCCEEEEEEcCCCCcEEE
Confidence 3334445555667777777665544 345555554433332221 112334567789999999874443 34678
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
++++..+. ...+....+.+...+|||
T Consensus 242 ~~~~dg~~-~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 242 LVSTDGRF-KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred EEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence 88986554 445666677788889998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.60 E-value=0.0011 Score=55.91 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=79.9
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe-E
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-A 332 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-~ 332 (374)
.+..+++++++..+++...+++|..|+-+.. .... ......+.+++|+|||+++++...++.+..|+..... .
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~---~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIH---ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEE---EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEE---EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence 3567889999988888888999888875432 2211 1223468899999999999988888888888875432 1
Q ss_pred EEEec--ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 333 LAILK--YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 333 ~~~~~--~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...+. ......+.+++.++|+++++.+.++.+..++..
T Consensus 103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 103 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred eeeccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence 22222 234568899999999999998888877666554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.0034 Score=51.50 Aligned_cols=140 Identities=9% Similarity=0.053 Sum_probs=89.0
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
+++....+.|++++-.. ....... ........+++++++..+++....+.+..++....... . ... ........
T Consensus 71 ~v~d~~~~~i~~~~~~~-~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~--~~~-~~~~~p~~ 144 (260)
T d1rwia_ 71 YVTDFNNRVVTLAAGSN-NQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-V--LPF-TGLNDPDG 144 (260)
T ss_dssp EEEETTTEEEEECTTCS-CCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-E--CCC-CSCCSCCE
T ss_pred EEeeeeeceeeeeeecc-ceeeeee-eeeeecccccccccceeEeeccccccccccccccceee-e--eee-cccCCcce
Confidence 45555556666655432 2212111 22355688999988876666666667777765432211 1 111 11234568
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+++.|+++++++...++.|..+|...................|++.++|.++++....+.|..++.
T Consensus 145 i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 145 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred eeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence 999999998888888899999987654433222345567889999999999888887887776654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.54 E-value=0.021 Score=49.13 Aligned_cols=104 Identities=10% Similarity=0.008 Sum_probs=69.0
Q ss_pred CeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeee--cCCCCeEEEEECCCCCEEEEEe-CCCeEEEEEccC
Q 017296 254 PVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEIN--LERPGISGTSIRPDSKIAATAG-WDRRVRIYNYRK 329 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~ 329 (374)
-+.++.|+|+++.++.++. .+.|.+|+.+.. +......... ....+.+.++|+|+++++.... .+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~-g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCC-CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 3678999999997776653 568888887543 3332222222 2245788999999999885444 689999999876
Q ss_pred CeEE--EE---ec--------------ccCCceEEEEEeCCCCEEEEE
Q 017296 330 GSAL--AI---LK--------------YHHATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 330 ~~~~--~~---~~--------------~h~~~v~~v~~sp~~~~las~ 358 (374)
.+.. .. +. .+......+.++|||++|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 5322 11 11 112235678999999988765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.033 Score=45.01 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCCEEEEEeCC-CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC---CCcEEEecCC
Q 017296 299 PGISGTSIRPDSKIAATAGWD-RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE---DSTVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~---D~~v~~W~~~ 370 (374)
.......++|+++.++..+.+ +...+|..........+..+........|||||++||..+. ...+.++++.
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 345567899999988765544 45555544322212233345566677899999998875543 3456666664
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.20 E-value=0.047 Score=45.86 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=72.1
Q ss_pred CeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEE-EEe--eec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 254 PVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVI-KKE--INL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 254 ~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~-~~~--~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..+.++|++++..+ ++-+..+.|..|+++........ ... ... .......+++.++|++.++....+.|.+||-
T Consensus 178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p- 256 (319)
T d2dg1a1 178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK- 256 (319)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence 45678999988765 55667889999998654222111 111 111 1123567999999998888888999999995
Q ss_pred CCeEEEEec------ccCCceEEEEEeCCCCEEEEEe
Q 017296 329 KGSALAILK------YHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 329 ~~~~~~~~~------~h~~~v~~v~~sp~~~~las~s 359 (374)
+|+.+..+. ++...+.+++|.|++..++..+
T Consensus 257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 788887764 3344678999999887665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.12 E-value=0.018 Score=48.60 Aligned_cols=146 Identities=10% Similarity=-0.023 Sum_probs=83.3
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC--CeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD--QKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D--~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.++-...+.|.-||.... .....+.........+++++++..+++...+ ....++.++..........+........
T Consensus 54 y~~D~~~g~I~ri~p~g~-~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 132 (319)
T d2dg1a1 54 FLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 132 (319)
T ss_dssp EEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred EEEECCCCEEEEEECCCC-eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCC
Confidence 444556777877776542 2222232344567789999988765554332 3344444443332222111111122356
Q ss_pred EEEEECCCCCEEEEEeCC------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCCC
Q 017296 302 SGTSIRPDSKIAATAGWD------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELYP 371 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~~ 371 (374)
..+++.|+|++.++.... +.+..++.. ++.+..+...-...+.++|+||++.| ++-+..+.|..+++..
T Consensus 133 nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 133 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208 (319)
T ss_dssp EEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence 789999999977764321 234444432 34444443344567889999999854 6667788888887653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0022 Score=57.64 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=83.8
Q ss_pred cCCcEEEEeccCCCCceeeeec---CccCeEEEEEecCCCceEEE---------ecCCeEEEEEcCCCCCeEEEEEeeec
Q 017296 229 EDGSILVWDIRNPGIPLTAMKV---HLEPVLCLSIDESCNGGISG---------GADQKIVLYNLDHSTGSCVIKKEINL 296 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~s~---------s~D~~i~lwd~~~~~~~~~~~~~~~~ 296 (374)
.+|.|.+||+.+... ...+.. ....+....++|++..++.. +..+.+.++|+...+...+ .....
T Consensus 35 ~~g~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l--~~~~~ 111 (465)
T d1xfda1 35 QKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL--DPPEV 111 (465)
T ss_dssp SSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC--CCTTC
T ss_pred CCCcEEEEECCCCCE-EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec--cCccC
Confidence 467788999875432 222222 22366777889998877665 3357888999876543221 11111
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCc-----------------eEEEEEeCCCCEEEEE
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHAT-----------------CNAVSFSSDCKLMASA 358 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~-----------------v~~v~~sp~~~~las~ 358 (374)
....+....|||||+.||=.. ++.+.+.+...++..+... +-.+. -..+-|||||++||..
T Consensus 112 ~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~ 190 (465)
T d1xfda1 112 SNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (465)
T ss_dssp CSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred CccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence 223355678999999988554 6778888776665443332 22121 1467799999999987
Q ss_pred e-CCCcEEEecC
Q 017296 359 S-EDSTVALWEL 369 (374)
Q Consensus 359 s-~D~~v~~W~~ 369 (374)
. .+..|..+.+
T Consensus 191 ~~D~s~V~~~~~ 202 (465)
T d1xfda1 191 AINDSRVPIMEL 202 (465)
T ss_dssp EEECTTSCEEEE
T ss_pred Eecccccceeec
Confidence 5 4455665544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.97 E-value=0.047 Score=46.79 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=35.5
Q ss_pred EEEECCCCCEEEEEeCCC-----------eEEEEEccCCeEEEEecc--cCCceEE-EEEeCCCCEEEEEeC
Q 017296 303 GTSIRPDSKIAATAGWDR-----------RVRIYNYRKGSALAILKY--HHATCNA-VSFSSDCKLMASASE 360 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~--h~~~v~~-v~~sp~~~~las~s~ 360 (374)
+.+..||+++++.|+.+. ++.+||..+.+ ...+.. +...-.+ ..+.+||+.++.|+.
T Consensus 293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe-EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 455668999999888531 57889987764 222221 1111122 335799999998873
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.37 E-value=0.16 Score=41.85 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=79.8
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec--CCCCeEEEEEC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL--ERPGISGTSIR 307 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s 307 (374)
.+.|.-||+++.. ...+ .....+.++.+.+++. ++.++.+ .+.++|.+... ......... ....+..+.+.
T Consensus 39 ~~~I~r~d~~~g~--~~~~-~~~~~~~~i~~~~dg~-l~va~~~-gl~~~d~~tg~--~~~l~~~~~~~~~~~~nd~~vd 111 (295)
T d2ghsa1 39 ERELHELHLASGR--KTVH-ALPFMGSALAKISDSK-QLIASDD-GLFLRDTATGV--LTLHAELESDLPGNRSNDGRMH 111 (295)
T ss_dssp GTEEEEEETTTTE--EEEE-ECSSCEEEEEEEETTE-EEEEETT-EEEEEETTTCC--EEEEECSSTTCTTEEEEEEEEC
T ss_pred CCEEEEEECCCCe--EEEE-ECCCCcEEEEEecCCC-EEEEEeC-ccEEeecccce--eeEEeeeecCCCcccceeeEEC
Confidence 4566667765422 2222 1234677888887765 4445554 58888876443 222111111 12246788999
Q ss_pred CCCCEEEEEeCC----CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE-EEEEeCCCcEEEecCC
Q 017296 308 PDSKIAATAGWD----RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL-MASASEDSTVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~-las~s~D~~v~~W~~~ 370 (374)
|+|++.++...+ +.-.+|.+.+++..... ......+.++|+|+++. +++-+..+.|..++++
T Consensus 112 ~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 112 PSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp TTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCCEEEEeccccccccceeEeeecCCcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 999987755432 34566777677654433 33446788999999984 4566777888877764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0047 Score=55.43 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=63.9
Q ss_pred ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe---------CCCeEEEEEccCCeEEEE--eccc
Q 017296 271 GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---------WDRRVRIYNYRKGSALAI--LKYH 339 (374)
Q Consensus 271 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---------~dg~v~iwd~~~~~~~~~--~~~h 339 (374)
..+|.|.+||+...+....+. ........+....||||+++|+.+. ..+...++|+.+++.... ....
T Consensus 34 ~~~g~i~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred eCCCcEEEEECCCCCEEEEEc-CccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence 346788999887654433221 1112234567788999999987664 356788999987764322 2223
Q ss_pred CCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 340 HATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...+....|||||+.||... ++.|.+.+..
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~ 142 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV 142 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred ccccceeeeccCCceEEEEe-cceEEEEecC
Confidence 34555678999999999876 5667666553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.77 E-value=0.075 Score=42.88 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=53.1
Q ss_pred CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CC-----eEEEEEccCCeEEEEec
Q 017296 264 CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DR-----RVRIYNYRKGSALAILK 337 (374)
Q Consensus 264 ~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~ 337 (374)
+..++-.+ ++.|-+.|++..... .+..........+|||||+.||-... ++ .|.+.+...++... +.
T Consensus 12 G~~v~f~~-~~dl~~~d~~~g~~~-----~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt 84 (281)
T d1k32a2 12 GDRIIFVC-CDDLWEHDLKSGSTR-----KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-IT 84 (281)
T ss_dssp TTEEEEEE-TTEEEEEETTTCCEE-----EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CC
T ss_pred CCEEEEEe-CCcEEEEECCCCCEE-----EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-ee
Confidence 55555443 445666677654322 22333445778899999999884432 22 36666776666443 22
Q ss_pred cc-------CCceEEEEEeCCCCEEEEE
Q 017296 338 YH-------HATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 338 ~h-------~~~v~~v~~sp~~~~las~ 358 (374)
.+ .......+|+|||+.|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred ecCCCccCccccccccccCCCCCEEEEE
Confidence 12 2345678899999988864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=95.35 E-value=0.17 Score=42.18 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=61.1
Q ss_pred eEEEEEecCCCceEEEe-------cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 255 VLCLSIDESCNGGISGG-------ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s-------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
...+++++++..+++.. .+++|..||.+..................-..++|.|++..++.+...+.|...|.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 44567777776444322 24678888775433222211111111123567999999988777777778888887
Q ss_pred cCCeEEEEeccc-C----CceEEEEEeCCCCEEEEE
Q 017296 328 RKGSALAILKYH-H----ATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 328 ~~~~~~~~~~~h-~----~~v~~v~~sp~~~~las~ 358 (374)
.... ...+... . ...+.+++.|+|.+.+|-
T Consensus 100 ~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd 134 (314)
T d1pjxa_ 100 DGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134 (314)
T ss_dssp TSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred CCcE-EEEEeccccccccCCCcEEEECCCCCEEEec
Confidence 5443 2222211 1 246789999999987774
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.15 E-value=0.85 Score=39.23 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=47.0
Q ss_pred EEEEECCCCCEEE-EEeCCCeEEEEEccCCeE-----------EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 302 SGTSIRPDSKIAA-TAGWDRRVRIYNYRKGSA-----------LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 302 ~~~~~sp~~~~l~-s~~~dg~v~iwd~~~~~~-----------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
..+.++|||++++ ++..+.+|.|.|++.... +..-........+-+|..+|....|-=-|+.|--|++
T Consensus 278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence 3578999999976 555689999999964211 1110112234567789887765556668999999987
Q ss_pred C
Q 017296 370 Y 370 (374)
Q Consensus 370 ~ 370 (374)
.
T Consensus 358 ~ 358 (459)
T d1fwxa2 358 E 358 (459)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.08 E-value=0.17 Score=42.74 Aligned_cols=142 Identities=13% Similarity=0.173 Sum_probs=80.5
Q ss_pred CCcEEEEeccCCCCceeeeecCcc-------CeEEEEE--ecCCCc-eEEE---ecCCeEEEEEcCCCCCeEEEEEeeec
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLE-------PVLCLSI--DESCNG-GISG---GADQKIVLYNLDHSTGSCVIKKEINL 296 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~-------~v~~~~~--~~~~~~-~~s~---s~D~~i~lwd~~~~~~~~~~~~~~~~ 296 (374)
.|.|.++|+.++......+..... ....+.+ +.++.. ++.. ....+|.+++++...........+..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 588999998764332222221111 1122332 333332 2222 34668888888765554444444433
Q ss_pred CC-CCeEEEEECCCCCEEEEEe--C-------------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEe
Q 017296 297 ER-PGISGTSIRPDSKIAATAG--W-------------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASAS 359 (374)
Q Consensus 297 ~~-~~v~~~~~sp~~~~l~s~~--~-------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s 359 (374)
.. .....+++..+++++++-. . -++..+|....++. ......-...+.|+++||+++| ++-+
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeC
Confidence 32 3467888888888888731 1 12344555444332 3333344578999999999854 5667
Q ss_pred CCCcEEEecCCCC
Q 017296 360 EDSTVALWELYPP 372 (374)
Q Consensus 360 ~D~~v~~W~~~~~ 372 (374)
..+.|+.|++..+
T Consensus 226 ~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 226 LAHKIHVYEKHAN 238 (340)
T ss_dssp GGTEEEEEEECTT
T ss_pred CCCeEEEEEeCCC
Confidence 7888988887643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.38 E-value=1.3 Score=37.95 Aligned_cols=200 Identities=11% Similarity=0.108 Sum_probs=103.1
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEecc--CccCCCCCcCC---------------------------CCCcceeEEEee
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQ--NSCGGSPNFSS---------------------------KGRGMCMAVQAY 213 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~--~~~~~~~~~~~---------------------------~~~~~~~~~~~~ 213 (374)
|.+.+|+..+.++|+-+.+.+.+..++. .++..--+++. .+....- ...+
T Consensus 14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP-~~S~ 92 (459)
T d1fwxa2 14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV-HMSF 92 (459)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE-EEEE
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC-cccc
Confidence 6688999999999999999987766541 11100001100 0010000 0011
Q ss_pred ecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec-CccCeEEEEEe--cCCCceEEEecC-----------------
Q 017296 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV-HLEPVLCLSID--ESCNGGISGGAD----------------- 273 (374)
Q Consensus 214 ~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~-h~~~v~~~~~~--~~~~~~~s~s~D----------------- 273 (374)
.....+|+..++.-..++.|..-|++.... -+.... -...+..+..+ ++-.+++.++.+
T Consensus 93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt-~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y 171 (459)
T d1fwxa2 93 TEGKYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 171 (459)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred cCCccceeEEEEEcCCCceEEEEECcceee-eEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence 111123444455566778888888865321 111111 12234444443 333333433332
Q ss_pred -CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC---------------eEEEEEccC-------C
Q 017296 274 -QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR---------------RVRIYNYRK-------G 330 (374)
Q Consensus 274 -~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---------------~v~iwd~~~-------~ 330 (374)
+.+...|.+.. ....+-... .....+.++|+|+++++.+.+- .+.+++... |
T Consensus 172 ~~~~t~ID~~tm--~V~~QV~V~---g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 172 VNVFTAVDADKW--EVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp EEEEEEEETTTT--EEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ceEEEEEecCCc--eEEEEeeeC---CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 23445555433 222222221 2355789999999999887542 244444421 0
Q ss_pred -------------------eEEEEecccCCceEEEEEeCCCCEEE-EEeCCCcEEEecCC
Q 017296 331 -------------------SALAILKYHHATCNAVSFSSDCKLMA-SASEDSTVALWELY 370 (374)
Q Consensus 331 -------------------~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~D~~v~~W~~~ 370 (374)
..+..+. -......+.++|||++++ ++-.|.+|.+.|+.
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred CcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence 0111121 123456689999999664 56789999998873
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.31 E-value=0.069 Score=43.12 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=40.2
Q ss_pred EECCC--CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 305 SIRPD--SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 305 ~~sp~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
..||| |+.||-.+ ++.|.+.|+..++.. .|..+.+.+...+|||||+.||..+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~ 59 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRV 59 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEE
Confidence 35688 88887554 566777799877754 5666777888999999999998653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.14 E-value=3.1 Score=33.57 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=70.3
Q ss_pred eEEEEEecCCCce-EEEecCCeEEEEEcCCCCCe----EEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 255 VLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGS----CVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 255 v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
-+.+.+++++..+ ++.+..+.|..++++...+. ................+++..+|.+.++.-..+.|..||. +
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~ 228 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-D 228 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-T
T ss_pred cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-C
Confidence 4556777776644 45566778888887643221 1111112222345678999999998877767889999995 6
Q ss_pred CeEEEEecccCCceEEEEEe-CCCC-EEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFS-SDCK-LMASASE 360 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~s-p~~~-~las~s~ 360 (374)
++.+..+.-....+++++|- ||.+ +++|+..
T Consensus 229 G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 229 GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 88888887666789999996 6766 4455443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=90.87 E-value=1.6 Score=36.52 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=56.5
Q ss_pred EEEEEcCCCCCeEEEEEeeec-CCCCeEEEEECCCCCEEEEEeCC-CeEEEEEccCCeEEEEecc--cCCceEEEEEeCC
Q 017296 276 IVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRPDSKIAATAGWD-RRVRIYNYRKGSALAILKY--HHATCNAVSFSSD 351 (374)
Q Consensus 276 i~lwd~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~--h~~~v~~v~~sp~ 351 (374)
+.+||....+-... ..+.. +.......++.+++++++.|+.+ .++.+||..+..-. .+.. ....-.+.+..+|
T Consensus 54 ~~~yd~~t~~w~~~--~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~-~~~~~~~~r~~~~~~~~~d 130 (387)
T d1k3ia3 54 TSSWDPSTGIVSDR--TVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PGPDMQVARGYQSSATMSD 130 (387)
T ss_dssp EEEECTTTCCBCCC--EEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-ECCCCSSCCSSCEEEECTT
T ss_pred EEEEECCCCcEeec--CCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccc-ccccccccccccceeeecC
Confidence 56788765432211 11111 22234567889999999988766 68999999876532 2211 1122345677789
Q ss_pred CCEEEEEeCC------CcEEEecCC
Q 017296 352 CKLMASASED------STVALWELY 370 (374)
Q Consensus 352 ~~~las~s~D------~~v~~W~~~ 370 (374)
|++++.++.+ ..+.+||..
T Consensus 131 G~v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 131 GRVFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETT
T ss_pred CceeeeccccccccccceeeeecCC
Confidence 9998888753 357777764
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=86.43 E-value=11 Score=33.74 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=34.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc-eEEEEEeCCCC-EEEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSSDCK-LMAS 357 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~-~las 357 (374)
.+.+|..|+.||.++.+|.++|+.+..++-.... -.=+.|..||+ |||.
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav 533 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAI 533 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEE
Confidence 4667778999999999999999999877533211 11145667887 5553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.10 E-value=6.6 Score=30.95 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=72.1
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
...|+-.++.... ...+......+..+.||.....+ .+-...+.|..-+++..................+..+++.+
T Consensus 9 ~~~I~~~~l~~~~--~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 9 RHEVRKMTLDRSE--YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp BSSEEEEETTSCC--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCeEEEEECCCCc--ceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence 4468888987532 33333455567789998765544 44456677877777543211111111122223466789987
Q ss_pred CCCEEE-EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE
Q 017296 309 DSKIAA-TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM 355 (374)
Q Consensus 309 ~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 355 (374)
.++.|. +-...++|.+.++........+.........+++.|...+|
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~l 134 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred ccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeE
Confidence 666555 44556889999987555444444455678889998855444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=85.24 E-value=8.6 Score=34.22 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=34.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE-EEEEeCCCC-EEEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCK-LMAS 357 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~-~las 357 (374)
.+.+|..|+.||.++.+|.++|+.+..++-...... =+.|..||+ ||+.
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 566888899999999999999999987753321111 145667888 5443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.99 E-value=8.4 Score=31.14 Aligned_cols=183 Identities=11% Similarity=0.192 Sum_probs=102.3
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
++.+++-++ .+++++|+++.+.+......+.. .| .... +....-+++ +..|.-|+++.
T Consensus 74 ~~IiALrag--~~LQiFnletK~klks~~~~e~V---vf-----------WkWi---s~~~L~lVT---~taVYHW~~~g 131 (327)
T d1utca2 74 SKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDV---TF-----------WKWI---SLNTVALVT---DNAVYHWSMEG 131 (327)
T ss_dssp SSEEEEEET--TEEEEEETTTTEEEEEEECSSCC---CE-----------EEES---SSSEEEEEC---SSEEEEEESSS
T ss_pred CcEEEEecC--CeEEEEehhHhhhhceEEcCCCc---EE-----------EEec---CCCEEEEEc---CCceEEEcccC
Confidence 355555553 58999999998876655432110 00 0111 111111332 45688899865
Q ss_pred CCCceeeeecCcc----CeEEEEEecCCCceEEEe-------cCCeEEEEEcCCCCCe---------------------E
Q 017296 241 PGIPLTAMKVHLE----PVLCLSIDESCNGGISGG-------ADQKIVLYNLDHSTGS---------------------C 288 (374)
Q Consensus 241 ~~~~~~~~~~h~~----~v~~~~~~~~~~~~~s~s-------~D~~i~lwd~~~~~~~---------------------~ 288 (374)
...|...+..|.. .|..-..+++..+++..| -.|.+.||+.+....+ .
T Consensus 132 ~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~ 211 (327)
T d1utca2 132 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEEST 211 (327)
T ss_dssp SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEE
T ss_pred CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCce
Confidence 5556666655543 466666677777664322 2367778877532100 0
Q ss_pred EE-------------EEeeec---------------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 289 VI-------------KKEINL---------------------ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 289 ~~-------------~~~~~~---------------------~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
++ .-++.. ..+.--++.+|+--..+..-+.-|.+.++|++++.++.
T Consensus 212 lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 212 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence 00 001100 11222456666665677778899999999999999987
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
.-+--.+.|...+-..+..=++....+|.|-
T Consensus 292 ~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 292 MNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 6665556666545444444455555666553
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.98 E-value=2.1 Score=36.83 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred EEEEECCCCCEEE-EEeCCC----eEEEEEccCCeEEE-EecccCCceEEEEEeCCCCEEEEEeC
Q 017296 302 SGTSIRPDSKIAA-TAGWDR----RVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 302 ~~~~~sp~~~~l~-s~~~dg----~v~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
...++|||++++| +-+..| +++++|+.+++.+. .+.. .....++|++|++.|+....
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~ 190 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAY 190 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEEC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEe
Confidence 3467899999877 333333 69999999998764 2221 12256799999998876543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.59 E-value=8.6 Score=33.03 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=58.8
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE-ee---ecCCCCeEEEEECCC---CCEE-EEEeC-----
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EI---NLERPGISGTSIRPD---SKIA-ATAGW----- 318 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~-~~---~~~~~~v~~~~~sp~---~~~l-~s~~~----- 318 (374)
.+..+.|+|.+++..+++.-..|.|++++.+.......... .. ...+.++..++|+|+ ..+| ++...
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 34566899999988666665679999987654332221110 00 112357889999995 3333 33221
Q ss_pred -C----C--eEEEEEccCCe-------E-EEEec-ccCCceEEEEEeCCCCEEEEEeC
Q 017296 319 -D----R--RVRIYNYRKGS-------A-LAILK-YHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 319 -d----g--~v~iwd~~~~~-------~-~~~~~-~h~~~v~~v~~sp~~~~las~s~ 360 (374)
+ + .++.+...... . +..+. ........|+|.|||++.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 1 13333332211 1 11111 11124578999999997777663
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