Citrus Sinensis ID: 017311
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 373 | ||||||
| 225425402 | 477 | PREDICTED: squamosa promoter-binding-lik | 0.967 | 0.756 | 0.632 | 1e-110 | |
| 255547696 | 483 | LIGULELESS1 protein, putative [Ricinus c | 0.975 | 0.753 | 0.656 | 1e-107 | |
| 147807238 | 496 | hypothetical protein VITISV_001736 [Viti | 0.930 | 0.699 | 0.628 | 1e-103 | |
| 444436392 | 488 | SPL2-like protein [Eucalyptus cladocalyx | 0.882 | 0.674 | 0.557 | 1e-85 | |
| 242390089 | 485 | transcription factor squamosa promoter b | 0.903 | 0.694 | 0.543 | 9e-85 | |
| 312282803 | 422 | unnamed protein product [Thellungiella h | 0.865 | 0.765 | 0.491 | 7e-78 | |
| 359484914 | 506 | PREDICTED: LOW QUALITY PROTEIN: promoter | 0.949 | 0.699 | 0.465 | 9e-78 | |
| 356565929 | 436 | PREDICTED: squamosa promoter-binding-lik | 0.873 | 0.747 | 0.518 | 9e-77 | |
| 363806996 | 443 | uncharacterized protein LOC100796013 [Gl | 0.890 | 0.749 | 0.502 | 4e-74 | |
| 5931647 | 425 | squamosa promoter binding protein-like 2 | 0.879 | 0.771 | 0.486 | 1e-72 |
| >gi|225425402|ref|XP_002271312.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 232/367 (63%), Positives = 269/367 (73%), Gaps = 6/367 (1%)
Query: 3 SMMEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEIDGDGGIDSTSFFSSGGGDGSG 62
SMMEWN K P+QWDWENL +FNA + E P+K Q +WEI+G+GGID+ SF+SSG G GSG
Sbjct: 5 SMMEWNAKAPVQWDWENLDIFNAKSTEIPKKL-QSDWEIEGEGGIDTGSFYSSGCGAGSG 63
Query: 63 GSISDMGLASLSKSSKSASNNSSSMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGS 122
GS SD+G A SKSSKSAS +SSS KTS F EA D +DF+ K++ +AEPTG S
Sbjct: 64 GSGSDLGHAYSSKSSKSASIDSSSKVGIKTSNFTFEAFQDFSQDFNKKRDLERAEPTGSS 123
Query: 123 PTLEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTSAKRSRSNPQTTQ 182
P LEAS+GSGEPL+GLKLGKR YFED+SAG N K S F + S T+AKRSR + Q
Sbjct: 124 PNLEASIGSGEPLIGLKLGKRTYFEDVSAGANAKGSVFSVIPISSDTTAKRSRLSCQNAH 183
Query: 183 AALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEK 242
+ CQVEGC LDLS+AKDYHRKHRVCE+H+K PKVIVGGLERRFCQQCSRFH LSEFDEK
Sbjct: 184 VSRCQVEGCNLDLSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEK 243
Query: 243 KRSCRRRLSDHNARRRKSQPEAVRLNPARLSSSLYDGKQQMTLVWNSVPFVHKNPTETFT 302
KRSCRRRLSDHNARRRK QPE ++ N ARL SS Y GKQQM+LV +SVP VH P +
Sbjct: 244 KRSCRRRLSDHNARRRKPQPEGIQSNSARL-SSFYGGKQQMSLVLSSVPIVHTRPAVNPS 302
Query: 303 WEGTCVSKSTQTKGYASKSAKGEGTDVLLQLHGNQPPNSVPARRDDSNGLLLSKAKVTMA 362
WEGTC SK TQTKG G G D L L G++ N + DS+ LL SK + A
Sbjct: 303 WEGTC-SKFTQTKGLVRPGNTG-GIDRQLHLPGSELQNGISTLCHDSSRLLHSKGAI--A 358
Query: 363 EVLDQGL 369
EVL+QGL
Sbjct: 359 EVLNQGL 365
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255547696|ref|XP_002514905.1| LIGULELESS1 protein, putative [Ricinus communis] gi|223545956|gb|EEF47459.1| LIGULELESS1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|147807238|emb|CAN77427.1| hypothetical protein VITISV_001736 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|444436392|gb|AGE09564.1| SPL2-like protein [Eucalyptus cladocalyx] | Back alignment and taxonomy information |
|---|
| >gi|242390089|dbj|BAH80551.1| transcription factor squamosa promoter binding protein-like [Eucalyptus grandis] | Back alignment and taxonomy information |
|---|
| >gi|312282803|dbj|BAJ34267.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
| >gi|359484914|ref|XP_002267224.2| PREDICTED: LOW QUALITY PROTEIN: promoter-binding protein SPL10 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356565929|ref|XP_003551188.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|363806996|ref|NP_001242317.1| uncharacterized protein LOC100796013 [Glycine max] gi|255635964|gb|ACU18328.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|5931647|emb|CAB56577.1| squamosa promoter binding protein-like 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 373 | ||||||
| TAIR|locus:2169248 | 419 | SPL2 "squamosa promoter bindin | 0.654 | 0.582 | 0.505 | 1.7e-59 | |
| TAIR|locus:2016014 | 396 | SPL10 "squamosa promoter bindi | 0.554 | 0.522 | 0.477 | 3.7e-54 | |
| TAIR|locus:2015999 | 393 | SPL11 "squamosa promoter-like | 0.605 | 0.575 | 0.463 | 2e-51 | |
| TAIR|locus:2059974 | 375 | SPL9 "squamosa promoter bindin | 0.407 | 0.405 | 0.514 | 3.5e-36 | |
| TAIR|locus:2026428 | 405 | AT1G69170 [Arabidopsis thalian | 0.249 | 0.229 | 0.655 | 6.2e-33 | |
| TAIR|locus:2159717 | 359 | SPL13A "SQUAMOSA PROMOTER-BIND | 0.571 | 0.593 | 0.373 | 2.6e-31 | |
| TAIR|locus:2832472 | 359 | SPL13B "SQUAMOSA PROMOTER-BIND | 0.571 | 0.593 | 0.373 | 2.6e-31 | |
| TAIR|locus:2095793 | 354 | SPL15 "squamosa promoter bindi | 0.335 | 0.353 | 0.524 | 7.9e-30 | |
| TAIR|locus:2101402 | 927 | SPL12 "squamosa promoter-bindi | 0.313 | 0.126 | 0.504 | 8.2e-28 | |
| TAIR|locus:2041329 | 881 | SPL1 "squamosa promoter bindin | 0.265 | 0.112 | 0.61 | 1.2e-27 |
| TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 131/259 (50%), Positives = 145/259 (55%)
Query: 5 MEWNGKTPLQWDWENLIMFNATAAENPRKTRQIEWEXXXXXXXXXXXXXXXXXXXXXXXX 64
ME N K P QW+ ENLI F + AE PRK + +EWE
Sbjct: 1 MECNAKPPFQWELENLISFGTSTAEVPRKLKPMEWEIDGFDCTSLYSSSFAYAGSSGSDI 60
Query: 65 XXXMGXXXXXXXXXXXXXXXXXMGETKTSKFRLEASDDVLEDFDLKKEFAKAEPTGGSPT 124
E +T F E + L EFAK T SP+
Sbjct: 61 AHAFSKSSKSTSISSSSA------EVRTHNFTSETGES------LPGEFAKGIDT--SPS 106
Query: 125 LEASVGSGEPLLGLKLGKRMYFEDISAGGNGKNSSFPAVCGSYSTS-AKRSRSNPQTTQA 183
LE S GSG+P+LGLKLGKR YFED N K P S S S K+S+S PQ Q
Sbjct: 107 LELSFGSGDPVLGLKLGKRTYFEDFWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQT 166
Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
CQVEGC LDLSSAKDYHRKHR+CENHSK PKV+V G+ERRFCQQCSRFH LSEFDEKK
Sbjct: 167 PHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKK 226
Query: 244 RSCRRRLSDHNARRRKSQP 262
RSCRRRLSDHNARRRK P
Sbjct: 227 RSCRRRLSDHNARRRKPNP 245
|
|
| TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 373 | |||
| pfam03110 | 79 | pfam03110, SBP, SBP domain | 9e-55 |
| >gnl|CDD|190527 pfam03110, SBP, SBP domain | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 9e-55
Identities = 61/79 (77%), Positives = 69/79 (87%)
Query: 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKR 244
CQVEGCG DLS+AKDYHR+H+VCE HSK+P V+V GLE+RFCQQCSRFH LSEFDE KR
Sbjct: 1 RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60
Query: 245 SCRRRLSDHNARRRKSQPE 263
SCRRRL+ HN RRRK QP+
Sbjct: 61 SCRRRLAGHNERRRKPQPD 79
|
SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 373 | |||
| PF03110 | 79 | SBP: SBP domain; InterPro: IPR004333 The SBP plant | 100.0 |
| >PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=265.38 Aligned_cols=78 Identities=67% Similarity=1.219 Sum_probs=63.3
Q ss_pred ceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccccccchHHHHHhHHHHhhccCCc
Q 017311 185 LCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 262 (373)
Q Consensus 185 ~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~HN~RRRk~~~ 262 (373)
+||||||++||+.+|.||+||||||.|++||+|+++|+++||||||+|||+|+|||++|||||++|++||+||||+++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999876
|
Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 373 | ||||
| 1ul4_A | 94 | Solution Structure Of The Dna-Binding Domain Of Squ | 4e-24 | ||
| 1wj0_A | 60 | Solution Structure Of The Dna-Binding Domain Of Squ | 6e-19 | ||
| 1ul5_A | 88 | Solution Structure Of The Dna-binding Domain Of Squ | 3e-16 |
| >pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 | Back alignment and structure |
|
| >pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60 | Back alignment and structure |
| >pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 373 | |||
| 1ul4_A | 94 | SPL4, squamosa promoter binding protein-like 4; tr | 9e-41 | |
| 1ul5_A | 88 | SPL7, squamosa promoter binding protein-like 7; tr | 7e-40 | |
| 1wj0_A | 60 | Squamosa promoter-binding protein-like 12; DNA-bin | 2e-34 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 9e-41
Identities = 51/87 (58%), Positives = 63/87 (72%)
Query: 178 PQTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLS 237
++ LCQV+ C D+ AK YHR+H+VCE H+K+ V + GL +RFCQQCSRFH L
Sbjct: 3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQ 62
Query: 238 EFDEKKRSCRRRLSDHNARRRKSQPEA 264
EFDE KRSCRRRL+ HN RRRKS E+
Sbjct: 63 EFDEAKRSCRRRLAGHNERRRKSSGES 89
|
| >1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 373 | |||
| 1ul4_A | 94 | SPL4, squamosa promoter binding protein-like 4; tr | 100.0 | |
| 1ul5_A | 88 | SPL7, squamosa promoter binding protein-like 7; tr | 100.0 | |
| 1wj0_A | 60 | Squamosa promoter-binding protein-like 12; DNA-bin | 99.97 |
| >1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=293.72 Aligned_cols=88 Identities=58% Similarity=1.025 Sum_probs=80.5
Q ss_pred CCCCCcceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccccccchHHHHHhHHHHhhc
Q 017311 179 QTTQAALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRR 258 (373)
Q Consensus 179 ~~~~~~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~HN~RRR 258 (373)
.+.+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+|||
T Consensus 4 ~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRR 83 (94)
T 1ul4_A 4 GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRR 83 (94)
T ss_dssp ----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCC
T ss_pred CCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhc
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccc
Q 017311 259 KSQPEAVR 266 (373)
Q Consensus 259 k~~~~~~~ 266 (373)
|+++|+.+
T Consensus 84 k~~~~~~~ 91 (94)
T 1ul4_A 84 KSSGESGP 91 (94)
T ss_dssp SCCCC---
T ss_pred cCCCCcCC
Confidence 99999864
|
| >1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
| >1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 373 | ||||
| d1ul5a_ | 86 | g.72.1.1 (A:) Squamosa promoter binding protein-li | 2e-47 | |
| d1ul4a_ | 81 | g.72.1.1 (A:) Squamosa promoter binding protein-li | 4e-47 | |
| d1wj0a_ | 58 | g.72.1.1 (A:) Squamosa-promoter binding-like prote | 1e-33 |
| >d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 7, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 153 bits (389), Expect = 2e-47
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKK 243
A CQV C D+S K YH++HRVC + + V++ G +R+CQQC +FH L +FDE K
Sbjct: 2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61
Query: 244 RSCRRRLSDHNARRRKSQPEA 264
RSCRR+L HN RR++ +
Sbjct: 62 RSCRRKLERHNNRRKRKPVDK 82
|
| >d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 | Back information, alignment and structure |
|---|
| >d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 373 | |||
| d1ul4a_ | 81 | Squamosa promoter binding protein-like 4, DNA-bind | 100.0 | |
| d1ul5a_ | 86 | Squamosa promoter binding protein-like 7, DNA-bind | 100.0 | |
| d1wj0a_ | 58 | Squamosa-promoter binding-like protein 12, DNA-bin | 99.97 |
| >d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: SBT domain superfamily: SBT domain family: SBT domain domain: Squamosa promoter binding protein-like 4, DNA-binding domain species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.5e-43 Score=279.61 Aligned_cols=80 Identities=64% Similarity=1.141 Sum_probs=78.5
Q ss_pred cceeeCCCccccccChhhhcccccchhccCCCeEEECCchhhHHHHhhccCCCCccccccchHHHHHhHHHHhhccCCcc
Q 017311 184 ALCQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQPE 263 (373)
Q Consensus 184 ~~CQVeGC~~dLs~~K~YhrRhrVCe~HsKAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~HN~RRRk~~~~ 263 (373)
..||||||++||+.+|+||+||+|||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++|
T Consensus 2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~ 81 (81)
T d1ul4a_ 2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE 81 (81)
T ss_dssp CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|