Citrus Sinensis ID: 017317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
MTPSSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKAT
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEccccccccccEEEEcccccEEEEccccEEEEEEccccEEEEEEccccccccEEEcccccEEEEEccccEEEEEcccEEEEEEEcccccccccccEEEcccccEEEEccccccccccccccccccccccEEEEEEccccEEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEEccccccccEEEEEccccccccEEEcccccEEEEEEcccccccccccccHHHHHHHHcccccEEEccccccEEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHEHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEccccEEEEcccccEEEEEccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEccccccEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccEHHHHHccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHcccHHHHcccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEcccccEEEEEcccc
Coil and Loop (DISEMBL)
mtpssnpppttgssskrcvpvcSGIVLSCLLAFTLQIfffspispdllllppassaslipttsdiqsvtrlgegilngpedvcvdrngvlytaTRDGWIKRlhkngtwenwkliggdtllgitttqeneILVCDADKGLLKVTEEGVTVLASHvngsrinlADDLIAATDGSIYFSVASTKfglhnwgldlleakphgkllkydpslnetSILLDSLFFANgvalskdedyLVVCETFKFRCLKYWLKGESKEQTEIFVenlpggpdniklapdgSFWIAILQLsspglefvhTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIvirkfedpngkvMSFVTSAlefddhlylgslntnfigklplkat
Flexible Loop (DISEMBL)
mtpssnpppttgssskrcvPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGegilngpedvcvDRNGVLYTatrdgwikrlhkngtwenwklIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLashvngsriNLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGivirkfedpngKVMSFVTSALEFDDHLYlgslntnfigklplkat
Low Complexity Region (SEG)
MtpssnpppttgsssKRCVPVCSGIVLSCLLAFTLQIFFFspispdllllppassaslipTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKliggdtllgitttQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKaavvnvaangiviRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKAT
Disordered region (IsUnstruct)
*****************CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKL*****
Disordered Region (DISOPRED)
*********************CSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA*
Disordered Region (DISEMBL)
****************RCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKAT
Disordered Region (DISPRO)
***************KRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPSSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.973	0.874	0.320	5e-42
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.882	0.875	0.328	8e-42
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.975	0.883	0.307	1e-39
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.873	0.785	0.323	9e-38
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.882	0.790	0.314	2e-37
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.871	0.781	0.333	2e-37
Q803F5	415	Adipocyte plasma membrane	yes	no	0.873	0.785	0.295	2e-34
P94111	335	Strictosidine synthase 1	no	no	0.584	0.650	0.268	8e-15
P68174	342	Strictosidine synthase (F	N/A	no	0.485	0.529	0.311	2e-14
P68175	344	Strictosidine synthase OS	N/A	no	0.485	0.526	0.311	2e-14

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 201/393 (51%), Gaps = 30/393 (7%)

Query: 7   PPPTTGSSSKRCVPVCSGIVLSCLLAFTL---QIFFFSPISPDLLLL--PPASSASLIPT 61
           P    GSS    V   + ++L+  LA  L    +   SPI P       PP     L P 
Sbjct: 25  PEVKEGSSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLHPN 84

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTL-- 119
           T  ++   RL E  L+GPE + V+   VL+T T DG + +L +NG  E     G      
Sbjct: 85  TK-LRQAERLFENQLSGPESI-VNIGDVLFTGTADGRVVKL-ENGEIETIARFGSGPCKT 141

Query: 120 ----------LGITTTQENEILVCDADKGLLKVTEEGVTV---LASH--VNGSRINLADD 164
                     LGI       + V DA KGL +V  +  +V   L+S   + G +++  +D
Sbjct: 142 RDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVND 201

Query: 165 LIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223
           L    DG  IYF+ +S+K+   ++ L ++EA   G+LL+YD    E  +LLD L F NGV
Sbjct: 202 LTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGV 261

Query: 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ 283
            LS +ED+++V ET   R  + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A   
Sbjct: 262 QLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAAT 321

Query: 284 L-SSPG---LEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG 339
           + ++PG   L+F+      K ++        ++  + + + V+ V+ +G   R   DP+G
Sbjct: 322 IRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDG 381

Query: 340 KVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
           +V+++V+ A E D +LYLGS  + FI +L L++
Sbjct: 382 QVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 414

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.
Mus musculus (taxid: 10090)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  171 bits (433), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 186/356 (52%), Gaps = 27/356 (7%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P       PP     L P T  ++   RL E  LNGPE + V+   VL+T T DG 
Sbjct: 23  SPIDPQSFSFKEPPFMFGVLQPNTK-LRQAERLFENQLNGPESI-VNIGDVLFTGTADGR 80

Query: 99  IKRLHKNGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVTEEG 146
           + +L +NG  E     G                LGI       + V DA KGL +V  + 
Sbjct: 81  VVKL-ENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQK 139

Query: 147 VTV---LASH--VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            +V   L+S   + G +++  +DL    DG  IYF+ +S+K+   ++ L ++E    G+L
Sbjct: 140 RSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRL 199

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE 260
           L+YD    E  +LLD L F NGV LS +ED+++V ET   R  + ++ G  K   ++FVE
Sbjct: 200 LEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVE 259

Query: 261 NLPGGPDNIKLAPDGSFWIAILQL-SSPG---LEFVHTSKATKHLLAAFPKLIKLVAPLH 316
           N+PG PDNI+ +  G +W+A   + ++PG   L+F+      K ++        ++  + 
Sbjct: 260 NMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVP 319

Query: 317 KKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
           + + V+ V+ +G   R   DP+G+V+++V+ A E D +LYLGS  + FI +L L++
Sbjct: 320 RYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQS 375

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 195/394 (49%), Gaps = 30/394 (7%)

Query: 4   SSNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQ---IFFFSPISPDLLLL--PPASSASL 58
           +  P    GSS    V   + ++L+  L   L    +   SPI P+ L    PP     L
Sbjct: 22  NRTPEAKGGSSFSGRVFRATFLMLAAFLTIPLLGALVLLDSPIDPEPLSFKEPPLFLGVL 81

Query: 59  IPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDT 118
            P T  +Q   RL E  L GPE +  +   V++T T DG + +L +NG  E     G   
Sbjct: 82  QPNTK-LQQAERLFENQLVGPESIA-NIGDVMFTGTADGRVVKL-ENGEVETIARFGSGP 138

Query: 119 L------------LGITTTQENEILVCDADKGLLKVT---EEGVTVLASH--VNGSRINL 161
                        LGI       + V DA KGL +V     E   +L+S   + G +++ 
Sbjct: 139 CKTRDDEPACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSF 198

Query: 162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA 220
            +DL    DG  IYF+ +S+K+   ++ L L+E    G+LL+YD    E  +LLD L F 
Sbjct: 199 LNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFP 258

Query: 221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           NGV LS  ED+++V E    R  ++++ G  K   ++FVENLPG PDNI+ +  G +W++
Sbjct: 259 NGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVS 318

Query: 281 ILQL-SSPG---LEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFED 336
           +  + ++PG   L+F+      K ++        ++  + + + V+ ++ +G  +R   D
Sbjct: 319 MAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHD 378

Query: 337 PNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL 370
           P G+V+++V+ A E   HLYLGS    ++ +L L
Sbjct: 379 PEGQVVTYVSEAHEHSGHLYLGSFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 181/355 (50%), Gaps = 29/355 (8%)

Query: 42  PISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWI 99
           PI P  + L  PP  +  L P  + +Q   RL E  L GPE + V+   VL+T T DG I
Sbjct: 63  PIDPQPISLKEPPLLTGVLEPN-NKLQKAERLWENQLVGPESI-VNIGDVLFTGTADGKI 120

Query: 100 KRLHKN-------------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV---T 143
            ++                GT E+    G    LGI     N + V DA  GL +V   T
Sbjct: 121 LKIEDGEVQTVARIGHGPCGTPEDEPTCGRP--LGIRVGPNNTLFVADAYYGLYEVNPGT 178

Query: 144 EEGVTVLASH--VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            E   ++++   + G +++  +DL    DG  IYF+ +S+K+   ++   ++E    G+L
Sbjct: 179 GETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRL 238

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE 260
           L+YD    E  +L+  L F NGV LS  ED+++V ET   R  +Y++ G  K   ++FVE
Sbjct: 239 LEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVE 298

Query: 261 NLPGGPDNIKLAPDGSFWIAI-LQLSSPG---LEFVHTSKATKHLLAAFPKLIKLVAPLH 316
           N+PG PDNI+L+  G +W+A+ +   +PG   L+F+      K ++        +   L 
Sbjct: 299 NMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPWIKRMIFKLLSQETVTKLLP 358

Query: 317 KKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK 371
           K++ VV ++  G   R F DP G  + +V+ A E + +LYLGS  + FI +L L+
Sbjct: 359 KRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNLQ 413

Gallus gallus (taxid: 9031)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 177/356 (49%), Gaps = 27/356 (7%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P  L    PP     L P T  ++   RL E  L GPE +      V++T T DG 
Sbjct: 63  SPIDPQPLSFKEPPLLLGVLHPNTK-LRQAERLFENQLVGPESIA-HIGDVMFTGTADGR 120

Query: 99  IKRLHKNGTWENWKLIGGDTL------------LGITTTQENEILVCDADKGLLKVT--- 143
           + +L +NG  E     G                LGI       + V DA KGL +V    
Sbjct: 121 VVKL-ENGEIETIARFGSGPCKTRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWK 179

Query: 144 EEGVTVLASH--VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL 200
            E   +L+S   + G  ++  +DL    DG  IYF+ +S+K+   ++ L ++E    G+L
Sbjct: 180 REVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRL 239

Query: 201 LKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE 260
           L+YD    E  +LLD L F NGV LS  ED+++V ET   R  + ++ G  K   ++FVE
Sbjct: 240 LEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVE 299

Query: 261 NLPGGPDNIKLAPDGSFWIAILQLS-SPG---LEFVHTSKATKHLLAAFPKLIKLVAPLH 316
           N+PG PDNI+ +  G +W+ +  +  +PG   L+F+      K ++        ++  + 
Sbjct: 300 NMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKLFSQETVMKFVP 359

Query: 317 KKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
           + + V+ ++ +G   R   DP+G V ++++   E D HLYLGS  + F+ +L L+A
Sbjct: 360 RYSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSLQA 415

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 184/357 (51%), Gaps = 32/357 (8%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P+LL L  PP  S    P    ++   RL E  L GPE +  +   ++YT T DG 
Sbjct: 62  SPIHPELLSLSEPPLMSGCYEPNFK-LREAQRLFEDQLVGPESIA-NFGDLIYTGTADGK 119

Query: 99  I-----------KRLHK---NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-- 142
           I            RL K   +G+ E     G    LGI       + V DA  GL KV  
Sbjct: 120 IVKIEGKSITVIARLGKPPCDGSREQEPSCG--RPLGIRVGPNGTLFVADAYLGLFKVNP 177

Query: 143 -TEEGVTVLAS---HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPH 197
            T E VT L S    V G R++  +DL    DG  +YF+ +S+++   ++   ++EA   
Sbjct: 178 VTGE-VTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATAD 236

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
           G++L+YD    E ++L+++L FANG+ L  DE+ ++V ET   R  +  + G +K   + 
Sbjct: 237 GRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDT 296

Query: 258 FVENLPGGPDNIKLAPDGSFWIAILQLS-SPG---LEFVHTSKATKHLLAAFPKLIKLVA 313
           FV+NLPG PDNI+ +  G +W+A+  +  +PG   L+F+      K L+        L+ 
Sbjct: 297 FVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIFKLFSQDVLMK 356

Query: 314 PLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL 370
            + + + V+ +  +G  +R F DP+G V ++V+ A E D HLYLGS  + ++ KL L
Sbjct: 357 FVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDL 413

Salmo salar (taxid: 8030)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 179/355 (50%), Gaps = 29/355 (8%)

Query: 41  SPISPDLLLL--PPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           SPI P++  L  PP  +    P    ++   RL E  L GPE +  +   V YT T DG 
Sbjct: 62  SPIQPEVFSLNEPPLMTGCYEPNLK-LRQAERLFEERLVGPESLA-NIGDVFYTGTADGK 119

Query: 99  IKRLHKN-------------GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--- 142
           I ++                G+ E+    G    LGI       + V DA  GL +V   
Sbjct: 120 IVKIEGRNIHVLATIGKPPCGSREHEHTCGRP--LGIRVGPNGTLFVADAYLGLFEVNPV 177

Query: 143 TEEGVTVLAS--HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK 199
           T E  +++++   + G R+   +DL    DG  +YF+ +S+++   ++   ++EA   G+
Sbjct: 178 TGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGR 237

Query: 200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV 259
           +L+YD    E ++++++L F NG+ L  DE+ ++V ET   R  +  + G +K   + F+
Sbjct: 238 VLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFI 297

Query: 260 ENLPGGPDNIKLAPDGSFWIAILQLS-SPG---LEFVHTSKATKHLLAAFPKLIKLVAPL 315
           ENLPG PDNI+ +  G +W+A+  +  +PG   L+F+      K L+        L+  +
Sbjct: 298 ENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIFKLFSQDTLLKFV 357

Query: 316 HKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL 370
            + + VV + ++G  +R F DP G V ++ + A E+  HLYLGS  + ++ KL L
Sbjct: 358 PRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDL 412

Danio rerio (taxid: 7955)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 115/250 (46%), Gaps = 32/250 (12%)

Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDL-IAATDGSIYFSVASTKF 182
           +  ++ V DA  GL  ++  G   T +   V+G      D L +  T G +YF+  S++F
Sbjct: 107 KTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRF 166

Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                 + L      GKL KYDPS    ++L++ L  + G A+S D  +++V +  K   
Sbjct: 167 SPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNI 226

Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIK-LAPDGSFWIAILQLSSPGLEFVHTSKATKHL 301
            +YW+KG     +E F  ++   PDNIK +   G+FW+A +                   
Sbjct: 227 KRYWIKGPKAGSSEDFTNSV-SNPDNIKRIGSTGNFWVASV------------------- 266

Query: 302 LAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLN 361
                 + K++ P +  A  VN  +NG V++     +    + ++   EF+ +LY+G+L 
Sbjct: 267 ------VNKIIVPTNPSAVKVN--SNGEVLQTIPLKDKFGDTLLSEVNEFEGNLYIGTLT 318

Query: 362 TNFIGKLPLK 371
             F G L L+
Sbjct: 319 GPFAGILKLE 328

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 98  WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155
           W K   +N T    + + G T       Q N++ + D    L  V  EG   T LA+ V+
Sbjct: 82  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 141

Query: 156 GSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
           G     L    +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL
Sbjct: 142 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 201

Query: 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274
             L    G  +S D  +++V E    + +KYWL+G  K   E+ V+ +P  P NIK   D
Sbjct: 202 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNAD 259

Query: 275 GSFWIA 280
           G FW++
Sbjct: 260 GHFWVS 265

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%)

Query: 98  WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN 155
           W K   +N T    + + G T       Q N++ + D    L  V  EG   T LA+ V+
Sbjct: 84  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 143

Query: 156 GSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
           G     L    +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL
Sbjct: 144 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 203

Query: 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD 274
             L    G  +S D  +++V E    + +KYWL+G  K   E+ V+ +P  P NIK   D
Sbjct: 204 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP-NPGNIKRNAD 261

Query: 275 GSFWIA 280
           G FW++
Sbjct: 262 GHFWVS 267

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.954	0.547	0.705	1e-149
297738547	461	unnamed protein product [Vitis vinifera]	0.954	0.772	0.705	1e-149
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.962	0.975	0.710	1e-149
297738546	382	unnamed protein product [Vitis vinifera]	0.943	0.921	0.692	1e-143
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.943	0.964	0.692	1e-143
255550417	356	Adipocyte plasma membrane-associated pro	0.949	0.994	0.666	1e-140
357450079	372	Adipocyte plasma membrane-associated pro	0.973	0.975	0.625	1e-133
388499476	372	unknown [Medicago truncatula]	0.973	0.975	0.625	1e-133
388511010	369	unknown [Lotus japonicus]	0.967	0.978	0.613	1e-131
357450071	360	Adipocyte plasma membrane-associated pro	0.938	0.972	0.618	1e-126

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/356 (70%), Positives = 302/356 (84%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK C+  CS   L+  LAFTLQI+FFSPISPD L LP  S+    PT++ +Q V ++GEG
Sbjct: 292 SKHCLQACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNKLQEVAKIGEG 351

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
           +L+ PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGGDTLLG+TTT+   I+VCD
Sbjct: 352 LLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCD 411

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
             KGLLKV E+GV++L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LD+LEA
Sbjct: 412 TQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEA 471

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ 254
           KPHG+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWLKGE K +
Sbjct: 472 KPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGR 531

Query: 255 TEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP 314
           TE+FV+NLPGGPDNI LAPDGSFWIA+L+LS  G+ FVHTSKA+KHL+A FPKL+ LV  
Sbjct: 532 TEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLVQG 591

Query: 315 LHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL 370
           + KKA VV V A+G ++++F DPNG VMSFVT+ALEF++HLYLGSLNTNFIGKLPL
Sbjct: 592 MQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/356 (70%), Positives = 302/356 (84%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK C+  CS   L+  LAFTLQI+FFSPISPD L LP  S+    PT++ +Q V ++GEG
Sbjct: 103 SKHCLQACSSFALASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNKLQEVAKIGEG 162

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
           +L+ PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGGDTLLG+TTT+   I+VCD
Sbjct: 163 LLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGGIVVCD 222

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
             KGLLKV E+GV++L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LD+LEA
Sbjct: 223 TQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWYLDVLEA 282

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ 254
           KPHG+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWLKGE K +
Sbjct: 283 KPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLKGERKGR 342

Query: 255 TEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP 314
           TE+FV+NLPGGPDNI LAPDGSFWIA+L+LS  G+ FVHTSKA+KHL+A FPKL+ LV  
Sbjct: 343 TEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVATFPKLLGLVQG 402

Query: 315 LHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL 370
           + KKA VV V A+G ++++F DPNG VMSFVT+ALEF++HLYLGSLNTNFIGKLPL
Sbjct: 403 MQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNFIGKLPL 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/359 (71%), Positives = 300/359 (83%)

Query: 15  SKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEG 74
           SK+ +  CS  VL+ +LA TLQI+FFSPISPD L LPP S+A  +PT + +Q VT++GEG
Sbjct: 10  SKQHLQTCSSFVLASILASTLQIYFFSPISPDPLHLPPVSAAINLPTNNKLQEVTKIGEG 69

Query: 75  ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCD 134
            LN PED+C D  G+LYTATRDGWIKRLH+NG+WE+WKLIGG  LLGITT +   I VCD
Sbjct: 70  FLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTARAGGIFVCD 129

Query: 135 ADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA 194
           A KGLLKV E+GV+ L SHVNGS I  ADD+I A+DGS+YFSVAS+KFGLH+W LDLLEA
Sbjct: 130 AQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWYLDLLEA 189

Query: 195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ 254
           KPHG+LLKYDP LNETSI+LD+L F NGVALS+DED+LVVCET+KFRCLKYWLKGE K +
Sbjct: 190 KPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYWLKGERKGR 249

Query: 255 TEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP 314
           TE F++NLP GPDNI LAPDGSFWIA+++L+S G EFVH SKA KH LA FPKL +LV  
Sbjct: 250 TETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFPKLFQLVNG 309

Query: 315 LHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKAT 373
            ++KA VV VAA+G ++ KF+DPNGKVMSFVTSALEF+DHLYLGSLNTNFIGKLPLKA 
Sbjct: 310 SNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIGKLPLKAA 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/355 (69%), Positives = 301/355 (84%), Gaps = 3/355 (0%)

Query: 18  CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILN 77
           C+   S ++L+C+LA  LQIF FSPISPDLL LP  SSA+L+ T   +Q V ++GEG+L+
Sbjct: 30  CMRTSSTVILACILASALQIFLFSPISPDLLQLPQPSSAALL-TNKKLQEVAKIGEGLLD 88

Query: 78  GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK 137
            PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGG +L+G+T T+   I+VCD +K
Sbjct: 89  KPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEK 148

Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
           GLLKV E+GV++L SHVNGS+I  A+D+I A DGS+YFSVAST+F   NW LD+LEAKPH
Sbjct: 149 GLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEF--VNWYLDVLEAKPH 206

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
           G+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWL+GE K +TE 
Sbjct: 207 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTET 266

Query: 258 FVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK 317
           F++NLPGGPDN+ LAPDGSFWIA+++++S G EFVHTSKA KHLLA FPKL +LV   HK
Sbjct: 267 FIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHK 326

Query: 318 KAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
           KA+VV VAA+G +I KF+DPNGKV+SFVTSALEF+D+LYLGSLNTNFIG LPLKA
Sbjct: 327 KASVVKVAADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPLKA 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/355 (69%), Positives = 301/355 (84%), Gaps = 3/355 (0%)

Query: 18  CVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILN 77
           C+   S ++L+C+LA  LQIF FSPISPDLL LP  SSA+L+ T   +Q V ++GEG+L+
Sbjct: 13  CMRTSSTVILACILASALQIFLFSPISPDLLQLPQPSSAALL-TNKKLQEVAKIGEGLLD 71

Query: 78  GPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADK 137
            PEDVC D  G+LYTATRDGWIKRLH+NG+WE+W+LIGG +L+G+T T+   I+VCD +K
Sbjct: 72  KPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEK 131

Query: 138 GLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH 197
           GLLKV E+GV++L SHVNGS+I  A+D+I A DGS+YFSVAST+F   NW LD+LEAKPH
Sbjct: 132 GLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEF--VNWYLDVLEAKPH 189

Query: 198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI 257
           G+LLKYDP LNETSILLD+L FANGVALS+DED+LVVCET+KFRCLKYWL+GE K +TE 
Sbjct: 190 GQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTET 249

Query: 258 FVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK 317
           F++NLPGGPDN+ LAPDGSFWIA+++++S G EFVHTSKA KHLLA FPKL +LV   HK
Sbjct: 250 FIDNLPGGPDNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHK 309

Query: 318 KAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
           KA+VV VAA+G +I KF+DPNGKV+SFVTSALEF+D+LYLGSLNTNFIG LPLKA
Sbjct: 310 KASVVKVAADGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPLKA 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/357 (66%), Positives = 290/357 (81%), Gaps = 3/357 (0%)

Query: 16  KRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGI 75
           K C   C  +V+ CLLAF  QI++FSPISPDLL LP   +   +P    +Q V +LGEG 
Sbjct: 2   KACARTCLSVVVVCLLAFIFQIYYFSPISPDLLQLP---APFFLPPNKQLQEVIKLGEGF 58

Query: 76  LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDA 135
           + GPEDVC+D++GVLYTA RD WIKR+HKNG+WENWK I  D LLGI  ++E  ++VCDA
Sbjct: 59  IQGPEDVCMDKDGVLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDA 118

Query: 136 DKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK 195
           D GLLKVTE+GVTVLAS VNGS+I  ADD I ++DG+IYFSV STKFGLHNW LD+LEA+
Sbjct: 119 DTGLLKVTEDGVTVLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEAR 178

Query: 196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT 255
           PHG+LLKYDP+ N+TS+LLD L F NGVALS +EDYLV CE++KFRC K+WLKGE K +T
Sbjct: 179 PHGQLLKYDPTSNQTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKT 238

Query: 256 EIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPL 315
           E  ++NLPG PDNI LAPDGSFWI +LQ+++ GLEFVHTSKA+KHL+A+FPKLI+LV  +
Sbjct: 239 ETLIDNLPGAPDNINLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGV 298

Query: 316 HKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
            K A VVNVAA+G + RKF+DP+GKV+SFVTSA+EFD HLYLGSL  NF+GKLPLKA
Sbjct: 299 EKNAMVVNVAADGKITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPLKA 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/366 (62%), Positives = 295/366 (80%), Gaps = 3/366 (0%)

Query: 5   SNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSD 64
           +NPP T G   K CV + S +VL+ L+A T+Q+F+FSPI P +L +P ++S+      + 
Sbjct: 6   TNPPSTLG---KYCVTLTSSLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQ 62

Query: 65  IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITT 124
           +Q+V +LGEG L  PEDVCVD+NGVLYTATRDGWIKR+ +N  WENWK I   +LLGITT
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITT 122

Query: 125 TQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL 184
           +++  ++VCDA +GLLKVTE+G +V+ S VNGS++  ADD+I A+DG+IYFSV S KFGL
Sbjct: 123 SKDGGLIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGL 182

Query: 185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK 244
           H+W LDLLEA+PHG+LLKY+P+LNET I++D+L FANGVALSKDEDY+VVCET+KFRC++
Sbjct: 183 HDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVR 242

Query: 245 YWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA 304
           +WLKG +  +T+IF+ENLPGGPDNI LAPDGSFWIA++QL+S  L FVHTS   KHLLA+
Sbjct: 243 HWLKGINNGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLAS 302

Query: 305 FPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNF 364
           FP+LI L+    K A V+NV   G +IRKF D  GKV+SFVTSA+EF+DHLYLGSLN++F
Sbjct: 303 FPRLINLINSATKSAMVLNVGTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDF 362

Query: 365 IGKLPL 370
           +GKLPL
Sbjct: 363 VGKLPL 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/366 (62%), Positives = 294/366 (80%), Gaps = 3/366 (0%)

Query: 5   SNPPPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSD 64
           +NPP T G   K CV + S +VL+ L+A T+Q+F+FSPI P +L +P ++S+      + 
Sbjct: 6   TNPPSTLG---KYCVTLTSSLVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQ 62

Query: 65  IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITT 124
           +Q+V +LGEG L  PEDVCVD+NGVLYTATRDGWIKR+ +N  WENWK I   +LLGITT
Sbjct: 63  LQNVIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITT 122

Query: 125 TQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL 184
           +++  ++VCDA +GLLKVTE+G +V+ S VNGS++  ADD+I A+DG+IYFSV S KFGL
Sbjct: 123 SKDGGLIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGL 182

Query: 185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLK 244
           H+W LDLLEA+PHG+LLKY+P+LNET I++D+L FANGVALSKDEDY+VVCET+KFRC++
Sbjct: 183 HDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVR 242

Query: 245 YWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA 304
           +WLKG    +T+IF+ENLPGGPDNI LAPDGSFWIA++QL+S  L FVHTS   KHLLA+
Sbjct: 243 HWLKGIDNGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLAS 302

Query: 305 FPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNF 364
           FP+LI L+    K A V+NV   G +IRKF D  GKV+SFVTSA+EF+DHLYLGSLN++F
Sbjct: 303 FPRLINLINSATKSAMVLNVGTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDF 362

Query: 365 IGKLPL 370
           +GKLPL
Sbjct: 363 VGKLPL 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511010|gb|AFK43571.1| unknown [Lotus japonicus]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/365 (61%), Positives = 285/365 (78%), Gaps = 4/365 (1%)

Query: 8   PPTTGSSSKRCVPVCSGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQS 67
           P T   S+ +CV + S +VL+ L+A T+Q+F+FSPI P LL + PA S       + +Q+
Sbjct: 5   PTTQPFSTGKCVTLGSSLVLAALVALTVQVFYFSPIDPVLLDIAPAPSTK----NNKLQN 60

Query: 68  VTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQE 127
           V++LGEG+L  PEDVC D  G LYT TRDGWIKRL +NG WENWK +    LLGIT  ++
Sbjct: 61  VSKLGEGLLKQPEDVCFDEEGTLYTTTRDGWIKRLRRNGNWENWKHVDSHALLGITAAKD 120

Query: 128 NEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
             ++VCDA+KGLLKVTEEG +VLA+ VNGS +  ADD+I A+DG IYFS ASTKFG  NW
Sbjct: 121 GGLIVCDANKGLLKVTEEGFSVLATQVNGSPMRFADDVIEASDGDIYFSDASTKFGFGNW 180

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247
            L++LEA+PHG++LKY+P  NET+I+LD+L FANGVALSKD+DYLVVCET+KFRC ++WL
Sbjct: 181 YLEMLEARPHGRVLKYNPVSNETTIVLDNLAFANGVALSKDQDYLVVCETWKFRCTRHWL 240

Query: 248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK 307
           KG +K +T+IF+ENLPG PDNI LAPDGSFWIA+LQ++S GL FVHTSKA+KH++A+FP 
Sbjct: 241 KGANKGKTDIFIENLPGAPDNINLAPDGSFWIALLQITSEGLGFVHTSKASKHVVASFPW 300

Query: 308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGK 367
           L  LV    K A V NVA +G ++R F+D  GKV+S VTSA+EF+DHLYLGSLNTNF+GK
Sbjct: 301 LFNLVNGARKSAMVANVATDGKILRTFDDSEGKVLSMVTSAVEFEDHLYLGSLNTNFVGK 360

Query: 368 LPLKA 372
           L L +
Sbjct: 361 LSLHS 365

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450071|ref|XP_003595312.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484360|gb|AES65563.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/351 (61%), Positives = 281/351 (80%), Gaps = 1/351 (0%)

Query: 23  SGIVLSCLLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDV 82
           S +VL+ L+A T+Q+F+FSPI P +L +P A+S++     + +Q+V +LGEG L  PEDV
Sbjct: 9   SSLVLAALVALTVQVFYFSPIDPVILEIPSAASSTSSTKNNQLQNVIKLGEGFLKQPEDV 68

Query: 83  CVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV 142
           CVD++G+LYTATRDGWIKR+ +NG WENWK I   +LLGITT+++  ++VCDA KGLLKV
Sbjct: 69  CVDKDGILYTATRDGWIKRMVRNGNWENWKHIDSSSLLGITTSKDGGLIVCDATKGLLKV 128

Query: 143 TEE-GVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201
           TEE G +V+ S VNGS++  ADD+I A+DG+IYFSV STKFG+HNW LD+LEA+ HG+LL
Sbjct: 129 TEEEGFSVILSQVNGSQLMFADDVIEASDGNIYFSVPSTKFGMHNWYLDVLEARSHGQLL 188

Query: 202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN 261
           +Y+P  NET I+LD L FANGVALSKDEDYL+VCET+KFRCLKYWLKG +K +TEIF+EN
Sbjct: 189 RYNPLSNETVIVLDHLAFANGVALSKDEDYLLVCETWKFRCLKYWLKGINKGKTEIFIEN 248

Query: 262 LPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAV 321
           LP GPDNI LAPDGSFWIA++Q++S    FVHTSK  KHL+A FP+L  L++   K A V
Sbjct: 249 LPAGPDNINLAPDGSFWIALIQITSEKTGFVHTSKVFKHLIALFPRLFNLISSATKSAMV 308

Query: 322 VNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA 372
           V V   G +I+KF D NGK++ FVTSA+EF+DHLYLGS+  +F+GK PL++
Sbjct: 309 VKVDIEGNIIKKFGDDNGKIIDFVTSAIEFEDHLYLGSIKCDFVGKFPLQS 359

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.780	0.786	0.317	5.9e-41
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.780	0.784	0.310	2.6e-38
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.557	0.560	0.385	8.9e-38
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.772	0.776	0.314	2.4e-37
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.654	0.587	0.326	1e-32
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.651	0.585	0.324	9.8e-32
MGI|MGI:1919131	415	Apmap "adipocyte plasma membra	0.651	0.585	0.328	9.8e-32
RGD|1308874	376	Apmap "adipocyte plasma membra	0.651	0.646	0.324	3.3e-31
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.651	0.629	0.324	3.3e-31
ZFIN|ZDB-GENE-020919-1	415	apmap "adipocyte plasma membra	0.646	0.580	0.294	4.2e-30

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 98/309 (31%), Positives = 164/309 (53%)

Query:    71 LGEGILNGPEDVCVDRNG-VLYTATRDGWIKRL--HKNGT---WENWKXXXXXXXXXXXX 124
             +G G+LN PED+   ++  ++YT   DGW+KR+  H +      E+W             
Sbjct:    62 IGVGLLNNPEDIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V DA+KGLL +++ G    +L    +G R  L D +  A +G +YF+ AS+K+
Sbjct:   122 LH-GEVIVADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
               + +  D LE KPHG+++ +DP+   T +LL  L+FANG+++S D+ + V CET   RC
Sbjct:   181 DFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRC 240

Query:   243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLL 302
              KY++   S+E+ E+F++ LPG PDNI+   DG +WIA++   +   +        + L+
Sbjct:   241 SKYYI---SEERVEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLI 297

Query:   303 AAFPKL-IKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGSLN 361
                 K  ++L++   K                + D      S +TS ++  +HLY GSL 
Sbjct:   298 YMAAKYGVELLSI--KNAAVLQVDLDGNPIAMYHD---HPFSHITSGVKIGNHLYFGSLL 352

Query:   362 TNFIGKLPL 370
              ++I +L L
Sbjct:   353 HSYITRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 96/309 (31%), Positives = 163/309 (52%)

Query:    71 LGEGILNGPEDVCVDRNG-VLYTATRDGWIKRL--H---KNGTWENWKXXXXXXXXXXXX 124
             +G G+L+ PED+   ++  ++YT   DGW+KR+  H    +   E+W             
Sbjct:    62 IGVGLLDKPEDIAYHQDSNLIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V DA KGLL ++ +G    +L     G +  L D +  A +G +YF+ AS K+
Sbjct:   122 VH-GEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
              LH    D+LE KPHG+L+ +DP+   T +LL  L+FANGV++S D+ +L+ CET   RC
Sbjct:   181 TLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRRC 240

Query:   243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLL 302
              KY++   ++E+ E+F++ LPG PDNI+   DG +WIA++  +S            + + 
Sbjct:   241 SKYYI---NEERVEVFIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKIT 297

Query:   303 AAFPKL-IKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGSLN 361
             A   K  ++L+    K                + D     +S +T+ ++  ++LY G++ 
Sbjct:   298 AIAAKYGVELM--FMKNAGVLQVDLDGNPIAYYHDQR---LSHITTGIKIGNYLYCGNIL 352

Query:   362 TNFIGKLPL 370
              ++I +L L
Sbjct:   353 HSYIIRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 84/218 (38%), Positives = 125/218 (57%)

Query:    71 LGEGILNGPEDVCV-DRNGVLYTATRDGWIKRLHK----NGTWENWKXXXXXXXXXXXXX 125
             +G G+LN PED+   + +G +YT   DGW+KR+      N +                  
Sbjct:    62 IGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFG 121

Query:   126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG 183
                E++V DA KGLL ++ +G    +L    +G R  L D +  A +G +YF+  S K+ 
Sbjct:   122 IHGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYN 181

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
             LH +  D+LE KPHG+L+ +DP+   T +LL  L+FANGV+LS D+ +LV CET   RC 
Sbjct:   182 LHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCS 241

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI 281
             KY++ G    + E+F++ LPG PDNI+   DG +WIA+
Sbjct:   242 KYYINGG---RVELFIQGLPGYPDNIRYDGDGHYWIAM 276

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 98/312 (31%), Positives = 162/312 (51%)

Query:    71 LGEGILNGPEDVCVDR-NGVLYTATRDGWIKRLH-----KNGTWENWKXXXXXXXXXXXX 124
             +G G+LN PED+   + + ++YT   DGW+KR+       +   E+W             
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPLGIAFG 121

Query:   125 XQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKF 182
                 E++V D  KGLL ++ +G    +L    +G +  L D +  A +G +YF+ AS K+
Sbjct:   122 IH-GEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKY 180

Query:   183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
              L+   LD+LE KP G+LL +DP+   T +LL  L+FANG+ +S D+ +L+ CET   RC
Sbjct:   181 TLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRC 240

Query:   243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA----ILQLSSPGLEFVHTSKAT 298
              KY++   S+E+ E+F ++LPG PDNI+   DG +WIA    +  L +  L++    K T
Sbjct:   241 SKYYI---SEERVEVFTQSLPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLT 297

Query:   299 KHLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLG 358
               ++A +   + L+    +                + DP    +S + +  +   +LY G
Sbjct:   298 A-MVAKYG--VDLM--FMENAGVLQVDLDGNPIAYYHDPK---LSHIATCDKIGKYLYCG 349

Query:   359 SLNTNFIGKLPL 370
             SL+ + I +L L
Sbjct:   350 SLSQSHILRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 83/254 (32%), Positives = 133/254 (52%)

Query:   128 NEILVCDADKGLLKVTE-EGVT-VLASH---VNGSRINLADDLIAATDG-SIYFSVASTK 181
             N + V DA  GL +V    G T +L S    + G +++  +DL    DG  IYF+ +S+K
Sbjct:   160 NTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSK 219

Query:   182 FGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR 241
             +   ++   ++E    G+LL+YD    E  +L+  L F NGV LS  ED+++V ET   R
Sbjct:   220 WQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMAR 279

Query:   242 CLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI-LQLSSPG---LEFVHTSKA 297
               +Y++ G  K   ++FVEN+PG PDNI+L+  G +W+A+ +   +PG   L+F+     
Sbjct:   280 IRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSMLDFLSEKPW 339

Query:   298 TKHLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYL 357
              K ++        +   L K+             R F DP G  + +V+ A E + +LYL
Sbjct:   340 IKRMIFKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYL 399

Query:   358 GSLNTNFIGKLPLK 371
             GS  + FI +L L+
Sbjct:   400 GSFRSPFICRLNLQ 413

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 82/253 (32%), Positives = 136/253 (53%)

Query:   130 ILVCDADKGLLKVT--EEGVTVLASH---VNGSRINLADDLIAATDGS-IYFSVASTKFG 183
             + V DA KGL +V   +  V +L S    + G +++  +DL    DG  IYF+ +S+K+ 
Sbjct:   162 LFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKKIYFTDSSSKWQ 221

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
               ++ L ++E    G+LL+YD    E  +LLD L F NGV LS +ED+++V ET   R  
Sbjct:   222 RRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFVLVAETTMARIR 281

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL-SSPG---LEFVHTSKATK 299
             ++++ G  K   ++FVENLPG PDNI+ +  G +W+ +  + S+PG   L+F+      K
Sbjct:   282 RFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSMLDFLSERPYIK 341

Query:   300 HLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGS 359
              ++        ++  + +              R   DP G+V S+V+   E++ HLYLGS
Sbjct:   342 RMIFKLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYVSEVHEYNGHLYLGS 401

Query:   360 LNTNFIGKLPLKA 372
                 F+ +L L++
Sbjct:   402 FRAPFLCRLSLQS 414

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 83/253 (32%), Positives = 139/253 (54%)

Query:   130 ILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIAATDG-SIYFSVASTKFG 183
             + V DA KGL +V  +   V +L S    + G +++  +DL    DG  IYF+ +S+K+ 
Sbjct:   162 LFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQ 221

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
               ++ L ++EA   G+LL+YD    E  +LLD L F NGV LS +ED+++V ET   R  
Sbjct:   222 RRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIR 281

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL-SSPG---LEFVHTSKATK 299
             + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A   + ++PG   L+F+      K
Sbjct:   282 RVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIK 341

Query:   300 HLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGS 359
              ++        ++  + +              R   DP+G+V+++V+ A E D +LYLGS
Sbjct:   342 RMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGS 401

Query:   360 LNTNFIGKLPLKA 372
               + FI +L L++
Sbjct:   402 FRSPFICRLSLQS 414

GO:0004064 "arylesterase activity" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 82/253 (32%), Positives = 138/253 (54%)

Query:   130 ILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIAATDG-SIYFSVASTKFG 183
             + V DA KGL +V  +   V +L S    + G +++  +DL    DG  IYF+ +S+K+ 
Sbjct:   123 LFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQ 182

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
               ++ L ++E    G+LL+YD    E  +LLD L F NGV LS +ED+++V ET   R  
Sbjct:   183 RRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIR 242

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL-SSPG---LEFVHTSKATK 299
             + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A   + ++PG   L+F+      K
Sbjct:   243 RVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIK 302

Query:   300 HLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGS 359
              ++        ++  + +              R   DP+G+V+++V+ A E D +LYLGS
Sbjct:   303 RMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGS 362

Query:   360 LNTNFIGKLPLKA 372
               + FI +L L++
Sbjct:   363 FRSPFICRLSLQS 375

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 82/253 (32%), Positives = 138/253 (54%)

Query:   130 ILVCDADKGLLKVTEE--GVTVLASH---VNGSRINLADDLIAATDG-SIYFSVASTKFG 183
             + V DA KGL +V  +   V +L S    + G +++  +DL    DG  IYF+ +S+K+ 
Sbjct:   133 LFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQ 192

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
               ++ L ++E    G+LL+YD    E  +LLD L F NGV LS +ED+++V ET   R  
Sbjct:   193 RRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIR 252

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL-SSPG---LEFVHTSKATK 299
             + ++ G  K   ++FVEN+PG PDNI+ +  G +W+A   + ++PG   L+F+      K
Sbjct:   253 RVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIK 312

Query:   300 HLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGS 359
              ++        ++  + +              R   DP+G+V+++V+ A E D +LYLGS
Sbjct:   313 RMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGS 372

Query:   360 LNTNFIGKLPLKA 372
               + FI +L L++
Sbjct:   373 FRSPFICRLSLQS 385

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

ZFIN|ZDB-GENE-020919-1 apmap "adipocyte plasma membrane associated protein" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 74/251 (29%), Positives = 132/251 (52%)

Query:   130 ILVCDADKGLLKV---TEEGVTVLASH--VNGSRINLADDLIAATDGS-IYFSVASTKFG 183
             + V DA  GL +V   T E  +++++   + G R+   +DL    DG  +YF+ +S+++ 
Sbjct:   162 LFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQ 221

Query:   184 LHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL 243
               ++   ++EA   G++L+YD    E ++++++L F NG+ L  DE+ ++V ET   R  
Sbjct:   222 RRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIK 281

Query:   244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS-SPG---LEFVHTSKATK 299
             +  + G +K   + F+ENLPG PDNI+ +  G +W+A+  +  +PG   L+F+      K
Sbjct:   282 RVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLK 341

Query:   300 HLLAAFPKLIKLVAPLHKKXXXXXXXXXXXXXRKFEDPNGKVMSFVTSALEFDDHLYLGS 359
              L+        L+  + +              R F DP G V ++ + A E+  HLYLGS
Sbjct:   342 KLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGS 401

Query:   360 LNTNFIGKLPL 370
               + ++ KL L
Sbjct:   402 FRSPYLCKLDL 412

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T0E5	APMAP_BOVIN	No assigned EC number	0.3071	0.9758	0.8834	yes	no
Q7TP48	APMAP_RAT	No assigned EC number	0.3286	0.8820	0.875	yes	no
Q9D7N9	APMAP_MOUSE	No assigned EC number	0.3206	0.9731	0.8746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	373
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	5e-27
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	3e-22
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	1e-08

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  102 bits (256), Expect = 5e-27
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query: 166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL 225
           +    G +YF+ +S+++        +LE    G+L+KYDPS   T +LL  L+F NG+AL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 226 SKDEDYLVVCETFKFRCLKYWLKGE 250
           S D  +++ CET   R  KYW+KG 
Sbjct: 65  SPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 18/217 (8%)

Query: 70  RLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN 128
            LGEG +  P     DR  +L+     G I RL  + G    +   GG +   +      
Sbjct: 25  TLGEGPVWDP-----DRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR 79

Query: 129 EILVCDADKGLLKV-TEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
            ++ C+    LL   T   +T+LA   +G  +N  +D +   DG I+F        +  +
Sbjct: 80  -LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG------DMGYF 132

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247
            L   E +P G L + DP      +L D L   NG+A S D   L V +T   R  +Y L
Sbjct: 133 DLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192

Query: 248 KGE----SKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
                     +  +  +  PG PD + +  DG+ W+A
Sbjct: 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 29/220 (13%)

Query: 71  LGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH----KNGTWENWKLIGGDTLLGITTTQ 126
           LGEG +        +   + +     G I RL     K   W+    +G      I    
Sbjct: 1   LGEGPV-----WDEEEGALYWVDILGGRIHRLDPATGKETVWDLPGPVGA-----IALRD 50

Query: 127 ENEILVCDAD-KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH 185
           +  ++V       LL +    +T LA       +N  +D     DG  +F          
Sbjct: 51  DGRLIVALKRGLALLDLDTGELTTLADLEPDEPLNRFNDGKVDPDGRFWFGTM------- 103

Query: 186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKY 245
             G D+      G L + DP   +   +LD +  +NG+A S D   L   ++   R   +
Sbjct: 104 --GFDIAPGGEPGALYRLDPDG-KVERVLDGITISNGLAWSPDGKTLYFADSPTRRIWAF 160

Query: 246 --WLKGESKEQTEIFV--ENLPGGPDNIKLAPDGSFWIAI 281
                G       +F   ++  G PD + +  +G+ W+A 
Sbjct: 161 DYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.96
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.8
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.8
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.74
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.62
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.62
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
PRK11028	330	6-phosphogluconolactonase; Provisional	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.4
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.38
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
PRK11028	330	6-phosphogluconolactonase; Provisional	99.27
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	99.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.25
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.19
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.17
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.16
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.15
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.08
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.05
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.03
COG3391	381	Uncharacterized conserved protein [Function unknow	99.01
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.0
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.97
COG3391	381	Uncharacterized conserved protein [Function unknow	98.86
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.81
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.81
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.73
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.69
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.58
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.51
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.48
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.48
PRK04792	448	tolB translocation protein TolB; Provisional	98.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.45
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.43
KOG2055	514	consensus WD40 repeat protein [General function pr	98.41
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.38
PRK05137	435	tolB translocation protein TolB; Provisional	98.36
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.32
PRK04922	433	tolB translocation protein TolB; Provisional	98.31
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.31
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.31
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.29
PRK00178	430	tolB translocation protein TolB; Provisional	98.26
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.26
PRK05137	435	tolB translocation protein TolB; Provisional	98.26
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.25
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.25
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.24
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.24
PRK03629	429	tolB translocation protein TolB; Provisional	98.24
PRK02889	427	tolB translocation protein TolB; Provisional	98.24
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.19
PRK04792	448	tolB translocation protein TolB; Provisional	98.18
PRK03629	429	tolB translocation protein TolB; Provisional	98.18
PRK04043	419	tolB translocation protein TolB; Provisional	98.17
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.12
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.12
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.11
PRK02889	427	tolB translocation protein TolB; Provisional	98.11
PRK04922	433	tolB translocation protein TolB; Provisional	98.11
PRK04043	419	tolB translocation protein TolB; Provisional	98.1
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.1
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.08
PRK01742	429	tolB translocation protein TolB; Provisional	98.04
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.04
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.98
PRK00178	430	tolB translocation protein TolB; Provisional	97.96
KOG0266	456	consensus WD40 repeat-containing protein [General	97.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.93
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.85
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.84
PRK02888	635	nitrous-oxide reductase; Validated	97.83
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.79
KOG0286	343	consensus G-protein beta subunit [General function	97.79
PRK01742	429	tolB translocation protein TolB; Provisional	97.78
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.76
KOG0266	456	consensus WD40 repeat-containing protein [General	97.76
PRK13684	334	Ycf48-like protein; Provisional	97.74
KOG1273	405	consensus WD40 repeat protein [General function pr	97.74
PRK13684	334	Ycf48-like protein; Provisional	97.74
KOG0289	506	consensus mRNA splicing factor [General function p	97.72
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.71
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.71
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.7
PRK01029	428	tolB translocation protein TolB; Provisional	97.68
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.68
PTZ00421	493	coronin; Provisional	97.6
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.58
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.55
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.51
KOG2139	445	consensus WD40 repeat protein [General function pr	97.5
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.47
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.45
PTZ00421	493	coronin; Provisional	97.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	97.4
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.35
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.29
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.27
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.27
KOG1274	933	consensus WD40 repeat protein [General function pr	97.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.26
KOG2055	514	consensus WD40 repeat protein [General function pr	97.26
KOG1274	933	consensus WD40 repeat protein [General function pr	97.24
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.21
COG4946	668	Uncharacterized protein related to the periplasmic	97.13
COG4946	668	Uncharacterized protein related to the periplasmic	97.12
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.07
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.07
PLN00181	793	protein SPA1-RELATED; Provisional	97.05
COG3211	616	PhoX Predicted phosphatase [General function predi	97.05
KOG0289	506	consensus mRNA splicing factor [General function p	97.03
KOG0286	343	consensus G-protein beta subunit [General function	97.03
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.0
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	97.0
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.98
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.98
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.97
PRK01029	428	tolB translocation protein TolB; Provisional	96.96
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.94
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.82
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.8
PTZ00420	568	coronin; Provisional	96.8
KOG1539	910	consensus WD repeat protein [General function pred	96.79
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.79
KOG0639	705	consensus Transducin-like enhancer of split protei	96.78
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.75
KOG2048	691	consensus WD40 repeat protein [General function pr	96.71
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.7
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.69
KOG0279	315	consensus G protein beta subunit-like protein [Sig	96.69
PTZ00420	568	coronin; Provisional	96.65
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.65
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.64
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.64
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.59
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.55
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.52
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.51
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.48
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.44
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.43
KOG2048	691	consensus WD40 repeat protein [General function pr	96.37
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.35
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.35
KOG0646	476	consensus WD40 repeat protein [General function pr	96.32
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.29
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	96.29
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.27
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.19
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	96.07
PLN00181	793	protein SPA1-RELATED; Provisional	95.99
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.96
KOG1273	405	consensus WD40 repeat protein [General function pr	95.96
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	95.85
KOG2139	445	consensus WD40 repeat protein [General function pr	95.74
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.62
KOG0640	430	consensus mRNA cleavage stimulating factor complex	95.55
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.55
COG3211	616	PhoX Predicted phosphatase [General function predi	95.54
KOG0293	519	consensus WD40 repeat-containing protein [Function	95.46
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.46
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.46
PRK13616	591	lipoprotein LpqB; Provisional	95.44
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	95.42
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.41
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.36
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	95.3
PRK13616	591	lipoprotein LpqB; Provisional	95.16
PRK02888	635	nitrous-oxide reductase; Validated	95.13
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.05
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.02
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.98
KOG0303	472	consensus Actin-binding protein Coronin, contains	94.95
KOG4328	498	consensus WD40 protein [Function unknown]	94.91
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.8
KOG0284	464	consensus Polyadenylation factor I complex, subuni	94.71
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.69
KOG0301	745	consensus Phospholipase A2-activating protein (con	94.58
KOG0639	705	consensus Transducin-like enhancer of split protei	94.58
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.54
KOG0296	399	consensus Angio-associated migratory cell protein	94.47
KOG1539	910	consensus WD repeat protein [General function pred	94.33
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.26
KOG0283	712	consensus WD40 repeat-containing protein [Function	94.26
KOG0643	327	consensus Translation initiation factor 3, subunit	94.07
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	94.03
KOG0645	312	consensus WD40 repeat protein [General function pr	93.99
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.68
KOG1407	313	consensus WD40 repeat protein [Function unknown]	93.54
KOG1407	313	consensus WD40 repeat protein [Function unknown]	93.51
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	93.5
PHA02713	557	hypothetical protein; Provisional	93.47
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.21
PHA02713	557	hypothetical protein; Provisional	93.13
KOG0646	476	consensus WD40 repeat protein [General function pr	93.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.02
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	93.02
KOG0973	942	consensus Histone transcription regulator HIRA, WD	93.01
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.0
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.96
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	92.92
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.78
KOG0296	399	consensus Angio-associated migratory cell protein	92.74
KOG2315	566	consensus Predicted translation initiation factor	92.73
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	92.46
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	92.45
KOG2321	703	consensus WD40 repeat protein [General function pr	92.35
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.24
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	92.06
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	91.96
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	91.86
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	91.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.56
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	91.55
KOG0645	312	consensus WD40 repeat protein [General function pr	91.55
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	91.42
KOG2096	420	consensus WD40 repeat protein [General function pr	91.34
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	91.25
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.18
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.03
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	91.02
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.75
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	90.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	90.66
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	90.54
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	90.53
KOG0641	350	consensus WD40 repeat protein [General function pr	90.21
KOG1963	792	consensus WD40 repeat protein [General function pr	90.11
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	90.03
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	90.02
PHA03098	534	kelch-like protein; Provisional	90.01
KOG2110	391	consensus Uncharacterized conserved protein, conta	89.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	89.61
KOG1963	792	consensus WD40 repeat protein [General function pr	89.43
PHA02790	480	Kelch-like protein; Provisional	89.37
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	89.15
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.02
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	88.57
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.55
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	88.34
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	87.88
KOG2321	703	consensus WD40 repeat protein [General function pr	87.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	87.5
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	86.61
KOG0643	327	consensus Translation initiation factor 3, subunit	86.6
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	85.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	85.9
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	85.15
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	85.12
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	84.89
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	84.7
KOG0295	406	consensus WD40 repeat-containing protein [Function	84.62
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	84.28
KOG2096	420	consensus WD40 repeat protein [General function pr	84.25
KOG0771	398	consensus Prolactin regulatory element-binding pro	84.21
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	83.5
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	83.47
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	83.02
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	82.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	82.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	82.91
PHA02790	480	Kelch-like protein; Provisional	82.74
KOG4328	498	consensus WD40 protein [Function unknown]	82.27
KOG1215	877	consensus Low-density lipoprotein receptors contai	81.99
KOG0649	325	consensus WD40 repeat protein [General function pr	81.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	81.87
KOG3881	412	consensus Uncharacterized conserved protein [Funct	81.5
PF15416	442	DUF4623: Domain of unknown function (DUF4623)	81.34
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	81.22
KOG0284	464	consensus Polyadenylation factor I complex, subuni	81.2
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	80.79
KOG0641	350	consensus WD40 repeat protein [General function pr	80.6
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	80.48

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=5.1e-47  Score=336.42  Aligned_cols=320  Identities=31%  Similarity=0.535  Sum_probs=274.8

Q ss_pred             CCCCCCCCCCCCCccccceeEeccCCcCCcceEEEecCCC--EEEEecCCeEEEEEc-----CCc-----eEEeeeecCc
Q 017317           50 LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHK-----NGT-----WENWKLIGGD  117 (373)
Q Consensus        50 ~~~~~~~g~~~~~~~l~~~~~~~~g~~~~P~~ia~d~~G~--l~v~~~~g~I~~~~~-----~g~-----~~~~~~~~~~  117 (373)
                      .+..+..+.+.+++.+...+.+..+....|+.+.+. +|+  +|.|...|.|-+.+.     .+.     .......|++
T Consensus        38 ~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGR  116 (376)
T KOG1520|consen   38 FSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGR  116 (376)
T ss_pred             cCCCCcccccccccccCChhhheecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCC
Confidence            344454566777776666666666666656666665 344  678888888866652     011     2223445899


Q ss_pred             cccCeEECCCC-cEEEEECCCcEEEEec-CC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccc
Q 017317          118 TLLGITTTQEN-EILVCDADKGLLKVTE-EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (373)
Q Consensus       118 p~~gl~~d~~g-~L~va~~~~gl~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~  194 (373)
                      |. ||+++..| +|||||++.|++.+++ .| .+.+.+...|.++.+.|++.++++|.+||+|++++|..+++...++++
T Consensus       117 PL-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g  195 (376)
T KOG1520|consen  117 PL-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEG  195 (376)
T ss_pred             cc-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecC
Confidence            99 99999877 9999999999999994 55 788888889999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317          195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (373)
Q Consensus       195 ~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d  274 (373)
                      +.+|++++||+.++..+++.+++.+|||+++|+|+++++++|+...+|.|||++|++.++.++|++++||+||||..+++
T Consensus       196 ~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~  275 (376)
T KOG1520|consen  196 DPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDST  275 (376)
T ss_pred             CCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             CCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC----CCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE
Q 017317          275 GSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP----LHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE  350 (373)
Q Consensus       275 G~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~  350 (373)
                      |++||+....++..++++..+|++|+++.++|..++....    ..+|..|.+.+.+|++++++||++|+....++.+.+
T Consensus       276 G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E  355 (376)
T KOG1520|consen  276 GHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGE  355 (376)
T ss_pred             CCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEee
Confidence            9999999999999999999999999999999877655333    234466777779999999999999998888899999


Q ss_pred             eCCEEEEeeCCCCeEEEeeCC
Q 017317          351 FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       351 ~~g~L~vgs~~~~~i~~~~l~  371 (373)
                      .+|+||+||+..++|.+++|.
T Consensus       356 ~dg~LyiGS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  356 HDGHLYIGSLFNPYIARLKLP  376 (376)
T ss_pred             cCCeEEEcccCcceeEEEecC
Confidence            999999999999999999974

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.96  E-value=1.5e-26  Score=205.51  Aligned_cols=231  Identities=26%  Similarity=0.417  Sum_probs=177.2

Q ss_pred             cceEEEec-CCCEEEEe-cCCeEEEEEcCCceEEeeeecCccccCeEEC-CCCcEEEEECCCcEEEEe-cCC-cEEEeec
Q 017317           79 PEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-EEG-VTVLASH  153 (373)
Q Consensus        79 P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d-~~g~L~va~~~~gl~~~~-~~g-~~~l~~~  153 (373)
                      ||++++|+ +|.||+.+ .++.|+++++++.........+ |. |++++ ++|+||+++. .++..++ .++ .+.+...
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeec
Confidence            68899997 89999655 7899999996665444333333 88 99999 8899999986 5777778 778 7777665


Q ss_pred             cCCc-cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEE
Q 017317          154 VNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYL  232 (373)
Q Consensus       154 ~~~~-~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l  232 (373)
                      ..+. ++..+|+++++++|+|||++......         .....|+||+++++ ++.+.+..++..||||++++|++.|
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence            4343 77899999999999999998752110         00011789999998 8888888889999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCC--CcceeEEec--CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          233 VVCETFKFRCLKYWLKGES--KEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~~~~--~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      ||+++..++|++|+++...  ....+.+..  ...+.|||+++|++|+||++.+.+                        
T Consensus       149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~------------------------  204 (246)
T PF08450_consen  149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG------------------------  204 (246)
T ss_dssp             EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT------------------------
T ss_pred             eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC------------------------
Confidence            9999999999999987432  344455543  223469999999999999998865                        


Q ss_pred             hhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe---CCEEEEeeC
Q 017317          309 IKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF---DDHLYLGSL  360 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~L~vgs~  360 (373)
                                +.|.+++++|+.+..+..+.    ..++.+++.   .++|||.+.
T Consensus       205 ----------~~I~~~~p~G~~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 ----------GRIVVFDPDGKLLREIELPV----PRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             ----------TEEEEEETTSCEEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred             ----------CEEEEECCCccEEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence                      36899999999999998773    257888885   268999885

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4e-26  Score=205.18  Aligned_cols=253  Identities=26%  Similarity=0.420  Sum_probs=193.3

Q ss_pred             CCCccccceeEeccCCcCCcceEEEecCCCEE-EEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCC
Q 017317           60 PTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADK  137 (373)
Q Consensus        60 ~~~~~l~~~~~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~  137 (373)
                      .+...+.+...+.||+++.|+      .+.|| ++..+++|+++++ +|+.+.+......+. ++.++.+|.|+++.  +
T Consensus        15 ~~~~~~~~~~~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~--~   85 (307)
T COG3386          15 APVTLLDKGATLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACE--H   85 (307)
T ss_pred             cceeEeecccccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEc--c
Confidence            334456677778888777774      45444 7778999999996 587888877666777 88999988998886  4


Q ss_pred             cEEEEe-cCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317          138 GLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (373)
Q Consensus       138 gl~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  214 (373)
                      |+++++ +++ . +.++....+.+.+.+|+..++++|++||++..+ +   .  ....+....|.|||+|+.++..+.+.
T Consensus        86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~---~--~~~~~~~~~G~lyr~~p~g~~~~l~~  159 (307)
T COG3386          86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-F---D--LGKSEERPTGSLYRVDPDGGVVRLLD  159 (307)
T ss_pred             ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-c---c--cCccccCCcceEEEEcCCCCEEEeec
Confidence            677676 555 4 777777778888999999999999999999863 1   1  33334456789999999644444444


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec---CCCCcce-eEEecCCCCCCCceeECCCCCEEEEEecCCCchhh
Q 017317          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK---GESKEQT-EIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLE  290 (373)
Q Consensus       215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~---~~~~~~~-~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~  290 (373)
                      ..+..||||+||||++.+|++++..++|++|+.+   +...+.. ..+....+|.|||+++|.+|+||++...+.     
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g-----  234 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG-----  234 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC-----
Confidence            4599999999999999999999999999999886   3322322 233435679999999999999996544321     


Q ss_pred             hccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeC---CEEEEeeCCCCe
Q 017317          291 FVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSLNTNF  364 (373)
Q Consensus       291 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~~~~~  364 (373)
                                                  +.|.+|+++|+.+..+..|.    ..++..++.+   ++||+.+...+.
T Consensus       235 ----------------------------~~v~~~~pdG~l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         235 ----------------------------GRVVRFNPDGKLLGEIKLPV----KRPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             ----------------------------ceEEEECCCCcEEEEEECCC----CCCccceEeCCCcCEEEEEecCCCC
Confidence                                        25899999999999998876    2477777765   799999988854

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.85  E-value=5e-19  Score=150.05  Aligned_cols=237  Identities=16%  Similarity=0.192  Sum_probs=177.2

Q ss_pred             cCCcceEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEE
Q 017317           76 LNGPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l  150 (373)
                      -.+|..++.++||.+|.+ +..+.|-++| .+|+++.+... +..|+ +|.+++||..||+|...+|.|++ +++ ++.+
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence            478999999999999964 4677888999 68898888654 45799 99999999999999888999999 566 5554


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg  229 (373)
                      .-.. .......+...+|++|+|||+...                  |.--|+||.++..+++- .....|+||+..|||
T Consensus       140 ~lp~-~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG  200 (353)
T COG4257         140 PLPL-EHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG  200 (353)
T ss_pred             eccc-ccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence            3211 112234567899999999999754                  33337888877666653 345678999999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      + +|+++...+-|.++|...   +..+++...  +..-...+-.|+.|++|++++..                       
T Consensus       201 s-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~wittwg~-----------------------  253 (353)
T COG4257         201 S-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-----------------------  253 (353)
T ss_pred             c-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEEEeccCC-----------------------
Confidence            8 999998888899988432   233333221  12234456679999999999875                       


Q ss_pred             hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEE-EeCCEEEEeeCCCCeEEEeeCCC
Q 017317          308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSAL-EFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                                 +.+.+||+.-+...+|.-|..+ . ...++. +..|++|+.....++|.||+...
T Consensus       254 -----------g~l~rfdPs~~sW~eypLPgs~-a-rpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         254 -----------GSLHRFDPSVTSWIEYPLPGSK-A-RPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             -----------ceeeEeCcccccceeeeCCCCC-C-CcceeeeccCCcEEeeccccCceeecCccc
Confidence                       4589999998888888877654 2 234444 44589999999999999998653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.80  E-value=7.1e-17  Score=168.36  Aligned_cols=246  Identities=18%  Similarity=0.214  Sum_probs=173.8

Q ss_pred             CcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCceEEeeee---------------cCccccCeEECCCCc-EEEEECC
Q 017317           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTWENWKLI---------------GGDTLLGITTTQENE-ILVCDAD  136 (373)
Q Consensus        75 ~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~~~~~~~---------------~~~p~~gl~~d~~g~-L~va~~~  136 (373)
                      ++..|..+++|+ +|+||+++ .+++|.+++.+|+.......               ...|. |++++++|+ |||+|..
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence            478899999997 68899876 67899999988875433221               23589 999998765 8999876


Q ss_pred             C-cEEEEe-cCC-cEEEeec-c-----CC------ccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceE
Q 017317          137 K-GLLKVT-EEG-VTVLASH-V-----NG------SRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL  200 (373)
Q Consensus       137 ~-gl~~~~-~~g-~~~l~~~-~-----~~------~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l  200 (373)
                      + .|.+++ .++ ++.+... .     .+      ..++.|.++++++ +|.+||++..                 ++.|
T Consensus       645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I  707 (1057)
T PLN02919        645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQI  707 (1057)
T ss_pred             CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeE
Confidence            4 466677 566 6655431 1     11      1256788999999 6799999865                 4678


Q ss_pred             EEEeCCCCeEEEee---------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCccee---------
Q 017317          201 LKYDPSLNETSILL---------------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTE---------  256 (373)
Q Consensus       201 ~~~d~~~~~~~~~~---------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~---------  256 (373)
                      +++|..++.+..+.               ..+..|+|+++++|++.|||+++.+++|.+|++++.......         
T Consensus       708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            88888766654332               124578999999999999999999999999997643211000         


Q ss_pred             --EEec-------CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC
Q 017317          257 --IFVE-------NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN  327 (373)
Q Consensus       257 --~~~~-------~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~  327 (373)
                        .+..       .....|.++++|++|++||+....                                  +.|.++|++
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----------------------------------~rIrviD~~  833 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----------------------------------HKIKKLDPA  833 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----------------------------------CEEEEEECC
Confidence              0000       012368999999999999998764                                  247778876


Q ss_pred             CcEEEEEeCC------CC----ceecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          328 GIVIRKFEDP------NG----KVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       328 g~~~~~~~~~------~g----~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      +..+..+...      +|    ..++.+..+..+ +|+||+....++.|.++++..
T Consensus       834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            6555443211      11    124567777765 689999999999999999864

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.80  E-value=1.6e-19  Score=130.36  Aligned_cols=88  Identities=51%  Similarity=1.009  Sum_probs=74.6

Q ss_pred             ceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe
Q 017317          163 DDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (373)
Q Consensus       163 ~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  241 (373)
                      |+++++++ |.|||++++.+|...++..+++|+.++|+|++|||.+++.+++.+++.+|||+++++|+++++|+|+..+|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            58899998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCC
Q 017317          242 CLKYWLKGE  250 (373)
Q Consensus       242 i~~~~~~~~  250 (373)
                      |.|||++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.74  E-value=1.7e-15  Score=128.83  Aligned_cols=244  Identities=10%  Similarity=0.074  Sum_probs=176.6

Q ss_pred             cccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeec----CccccCeEECCCCcEEEEECCCc
Q 017317           64 DIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG----GDTLLGITTTQENEILVCDADKG  138 (373)
Q Consensus        64 ~l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~----~~p~~gl~~d~~g~L~va~~~~g  138 (373)
                      ...++++...|.-..|..|.+++||..|+.+....|.|++ ++..++.|....    .+.. ...||+.|+||+... .|
T Consensus        91 ~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q-~G  168 (353)
T COG4257          91 ATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQ-IG  168 (353)
T ss_pred             CCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeec-cc
Confidence            3457777777777889999999999999877666899999 477788775443    3344 678999999999864 33


Q ss_pred             E-EEEec-CC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317          139 L-LKVTE-EG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (373)
Q Consensus       139 l-~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  215 (373)
                      . -++|+ .+ ++++...    ....+++|++.+||.+|++...                 ...|-++|+.++..+++..
T Consensus       169 ~yGrLdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasla-----------------gnaiaridp~~~~aev~p~  227 (353)
T COG4257         169 AYGRLDPARNVISVFPAP----QGGGPYGICATPDGSVWYASLA-----------------GNAIARIDPFAGHAEVVPQ  227 (353)
T ss_pred             cceecCcccCceeeeccC----CCCCCcceEECCCCcEEEEecc-----------------ccceEEcccccCCcceecC
Confidence            3 37773 45 6665332    2246899999999999999643                 2479999998876555432


Q ss_pred             CC---CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE-ecCCCCCCCceeECCCCCEEEEEecCCCchhhh
Q 017317          216 SL---FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF-VENLPGGPDNIKLAPDGSFWIAILQLSSPGLEF  291 (373)
Q Consensus       216 ~~---~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~  291 (373)
                      ..   .....+.-++.|+ +|+++.+..++++|+...   .....+ .......|..+.+|..|++|....+.       
T Consensus       228 P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~---~sW~eypLPgs~arpys~rVD~~grVW~sea~a-------  296 (353)
T COG4257         228 PNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSV---TSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA-------  296 (353)
T ss_pred             CCcccccccccccCccCc-EEEeccCCceeeEeCccc---ccceeeeCCCCCCCcceeeeccCCcEEeecccc-------
Confidence            21   1223466788887 999999999999998543   222223 22223478899999999999998775       


Q ss_pred             ccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeC
Q 017317          292 VHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l  370 (373)
                                                 +.|.+||+....+.+|..+.-.  .....+....|.+|++...-+.+.+++.
T Consensus       297 ---------------------------gai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r~  346 (353)
T COG4257         297 ---------------------------GAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTRI  346 (353)
T ss_pred             ---------------------------CceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcceeEEEEe
Confidence                                       3589999999999988765422  2234444456899999999998888774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.62  E-value=1.3e-13  Score=144.04  Aligned_cols=190  Identities=14%  Similarity=0.210  Sum_probs=132.2

Q ss_pred             cCCcceEEEecCC-CEEEEe-cCCeEEEEE-cCCceEEeeee-----------------cCccccCeEECC-CCcEEEEE
Q 017317           76 LNGPEDVCVDRNG-VLYTAT-RDGWIKRLH-KNGTWENWKLI-----------------GGDTLLGITTTQ-ENEILVCD  134 (373)
Q Consensus        76 ~~~P~~ia~d~~G-~l~v~~-~~g~I~~~~-~~g~~~~~~~~-----------------~~~p~~gl~~d~-~g~L~va~  134 (373)
                      +..|.+|++|++| .||+++ .+++|.+++ .++..+++...                 ...|. ++++++ +|.+||++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence            5679999999865 489876 567888888 44555544321                 23678 999998 67899998


Q ss_pred             CC-CcEEEEe-cCC-cEEEeec-----cC-----CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceE
Q 017317          135 AD-KGLLKVT-EEG-VTVLASH-----VN-----GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL  200 (373)
Q Consensus       135 ~~-~gl~~~~-~~g-~~~l~~~-----~~-----~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l  200 (373)
                      .. +.|++++ .++ ...+...     ..     ...+..|++|+++++|. |||++..                 +++|
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n~~I  764 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------SSSI  764 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------CCeE
Confidence            65 4577777 566 5443211     00     12345789999999985 9999864                 4689


Q ss_pred             EEEeCCCCeEEEeec----------------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE
Q 017317          201 LKYDPSLNETSILLD----------------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF  258 (373)
Q Consensus       201 ~~~d~~~~~~~~~~~----------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~  258 (373)
                      .++|++++....+..                      .+..|.|++++++|+ +||+++.+++|.+|+.++....+....
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            999987665433221                      134689999999998 999999999999999765432211100


Q ss_pred             e----------cCCCCCCCceeECCCCCEEEEEecC
Q 017317          259 V----------ENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       259 ~----------~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .          ......|.++++|++|++||+....
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence            0          0111369999999999999998654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.62  E-value=8.6e-14  Score=130.51  Aligned_cols=174  Identities=21%  Similarity=0.279  Sum_probs=123.4

Q ss_pred             eeEeccC-CcCCcceEEEecCCCEEEEec------------CC-eEEEEE-c--CCc---eEEeeeecCccccCeEECCC
Q 017317           68 VTRLGEG-ILNGPEDVCVDRNGVLYTATR------------DG-WIKRLH-K--NGT---WENWKLIGGDTLLGITTTQE  127 (373)
Q Consensus        68 ~~~~~~g-~~~~P~~ia~d~~G~l~v~~~------------~g-~I~~~~-~--~g~---~~~~~~~~~~p~~gl~~d~~  127 (373)
                      ++.+++. .+..|+.|++|++|+|||++.            .+ +|++++ .  +|+   .+.++.....|. ||++.++
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~   82 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVG   82 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecC
Confidence            3445543 388999999999999999862            23 898887 3  454   456666677899 9999988


Q ss_pred             CcEEEEECCCcEEEEe-c--C----C-cEEEeeccCCc---cccccceeEEcCCCcEEEEeCCcccccccc--ccccccc
Q 017317          128 NEILVCDADKGLLKVT-E--E----G-VTVLASHVNGS---RINLADDLIAATDGSIYFSVASTKFGLHNW--GLDLLEA  194 (373)
Q Consensus       128 g~L~va~~~~gl~~~~-~--~----g-~~~l~~~~~~~---~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~--~~~~~~~  194 (373)
                      | |||++. ..|+++. .  +    + .+++.......   ..+.++++++++||.|||++.+........  ..+....
T Consensus        83 G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        83 G-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             C-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence            8 999975 4688884 2  2    2 34555544332   356789999999999999987421110000  0011122


Q ss_pred             cCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 017317          195 KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKY  245 (373)
Q Consensus       195 ~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  245 (373)
                      ...|.++++++++++.+.+..++.+|+|++++++|+ +|+++.......++
T Consensus       161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i  210 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV  210 (367)
T ss_pred             ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence            345789999999999999999999999999999998 89998755544443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.54  E-value=5.7e-12  Score=105.11  Aligned_cols=226  Identities=18%  Similarity=0.252  Sum_probs=143.0

Q ss_pred             CCCEEEEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCC--cEEEEECC--CcEEEEe-cCC-cEEEee---ccCC
Q 017317           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN--EILVCDAD--KGLLKVT-EEG-VTVLAS---HVNG  156 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g--~L~va~~~--~gl~~~~-~~g-~~~l~~---~~~~  156 (373)
                      +-.+||.-..|.|+|+|. ..+..... ..+.|..|..+--.|  ..+++.-+  .++..++ -.. ..++.+   ....
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            455668889999999982 22222111 112222144443222  34544322  3444454 122 222222   2233


Q ss_pred             ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  236 (373)
                      ...+..|+-.+||+|+.|.+++.. ++      +.+| ...|.||+.- ..++++.+...+.-+||++|+.|.+.+|+.+
T Consensus       106 ~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD  176 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYYID  176 (310)
T ss_pred             HHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEec-cCCCceeeehhccCCccccccccCcEEEEEc
Confidence            345677888999999999887641 11      1222 1224455554 4578888888888999999999999999999


Q ss_pred             CCCCeEEEE--EecCCCCcceeEEec------CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          237 TFKFRCLKY--WLKGESKEQTEIFVE------NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       237 ~~~~~i~~~--~~~~~~~~~~~~~~~------~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      +.+..|..|  +..+.......+..+      ..+-.|||+++|.+|+|||+++.+                        
T Consensus       177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng------------------------  232 (310)
T KOG4499|consen  177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG------------------------  232 (310)
T ss_pred             cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC------------------------
Confidence            999999555  465544443333321      123479999999999999999987                        


Q ss_pred             hhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeC---CEEEEeeC
Q 017317          309 IKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSL  360 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~  360 (373)
                                +.++++|+ .||.+..+.-|.    ..+++.++.+   +-+|+.+.
T Consensus       233 ----------~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  233 ----------GTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ----------cEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence                      46899996 599988887664    3578888865   35777664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.51  E-value=1.5e-12  Score=115.47  Aligned_cols=177  Identities=19%  Similarity=0.360  Sum_probs=123.5

Q ss_pred             CCcceEEEe-cCCCEEEEecCCeEEEEE-cCCceEEeeee------cCccccCeEECCCCcEEEEECC---------CcE
Q 017317           77 NGPEDVCVD-RNGVLYTATRDGWIKRLH-KNGTWENWKLI------GGDTLLGITTTQENEILVCDAD---------KGL  139 (373)
Q Consensus        77 ~~P~~ia~d-~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~------~~~p~~gl~~d~~g~L~va~~~---------~gl  139 (373)
                      ..|.+++++ ++|.+|++...+ +.+++ .+|+.+.+...      ..+|+ .++++++|+||+++..         ..+
T Consensus        40 ~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   40 PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccce
Confidence            349999999 799999988755 45558 56766665543      24578 9999999999999753         248


Q ss_pred             EEEecCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeE---EE
Q 017317          140 LKVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET---SI  212 (373)
Q Consensus       140 ~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~---~~  212 (373)
                      ++++.++ .+.+...     +..+|+|++++||+ ||++++.                 .++|++|+.+  +++.   +.
T Consensus       118 ~~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~~~~~~~~~~~~~~~~~  175 (246)
T PF08450_consen  118 YRIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADSF-----------------NGRIWRFDLDADGGELSNRRV  175 (246)
T ss_dssp             EEEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEETT-----------------TTEEEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCeEEEEecC-----cccccceEECCcchheeecccc-----------------cceeEEEeccccccceeeeee
Confidence            8888557 6555432     45789999999994 8999875                 4789999874  3312   22


Q ss_pred             ee--cC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CC-CCEEEEEe
Q 017317          213 LL--DS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PD-GSFWIAIL  282 (373)
Q Consensus       213 ~~--~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~d-G~lwva~~  282 (373)
                      +.  .. ...|.|++++.+|+ ||++....++|.+|+.+|.....   +. .....|.++++. ++ +.|||++.
T Consensus       176 ~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~---i~-~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  176 FIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLRE---IE-LPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEE---EE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEE---Ec-CCCCCEEEEEEECCCCCEEEEEeC
Confidence            22  22 23589999999998 99999999999999976542221   21 111478899993 44 46999875

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=1.2e-10  Score=108.44  Aligned_cols=243  Identities=16%  Similarity=0.244  Sum_probs=150.7

Q ss_pred             cCCcceEEEec-CCCEEEEec----CCeEEEEE--cC-CceEEeee---ecCccccCeEECCCCc-EEEEECCCc-EEEE
Q 017317           76 LNGPEDVCVDR-NGVLYTATR----DGWIKRLH--KN-GTWENWKL---IGGDTLLGITTTQENE-ILVCDADKG-LLKV  142 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~~----~g~I~~~~--~~-g~~~~~~~---~~~~p~~gl~~d~~g~-L~va~~~~g-l~~~  142 (373)
                      ...|..+++++ +..||+...    .|.|..+.  .+ |+.+.+..   .+..|+ .++++++|+ ||++.+..| +..+
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEE
Confidence            47899999988 556777664    57886666  55 66654432   345678 999999885 888887655 3333


Q ss_pred             e--cCC-cEEEeec-------cC--CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--C
Q 017317          143 T--EEG-VTVLASH-------VN--GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--L  207 (373)
Q Consensus       143 ~--~~g-~~~l~~~-------~~--~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~  207 (373)
                      +  .+| +......       ..  ......+..+.++|||+ +|++|.+                 ..+|+.|+.+  +
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~  177 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDT  177 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCC
Confidence            3  456 4332110       00  11234577899999985 8888754                 3466665544  3


Q ss_pred             CeEEE----eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecCC----CC--CCCceeECCCC
Q 017317          208 NETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENL----PG--GPDNIKLAPDG  275 (373)
Q Consensus       208 ~~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~----~g--~p~~i~~d~dG  275 (373)
                      ++.+.    .......|..++|++|++++|+++...+.|..|+++..  ......... .+    .+  .+.+|++++||
T Consensus       178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~ispdg  256 (345)
T PF10282_consen  178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS-TLPEGFTGENAPAEIAISPDG  256 (345)
T ss_dssp             -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SCETTSCSSSSEEEEEE-TTS
T ss_pred             ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-eccccccccCCceeEEEecCC
Confidence            33433    23445678899999999999999999999999988732  222222221 11    11  46779999999


Q ss_pred             C-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceecceeEEEEe--
Q 017317          276 S-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVTSALEF--  351 (373)
Q Consensus       276 ~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~--  351 (373)
                      + ||++..+..                                ...++.+|++ |+....-.-+.+.  ..+..+..+  
T Consensus       257 ~~lyvsnr~~~--------------------------------sI~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~  302 (345)
T PF10282_consen  257 RFLYVSNRGSN--------------------------------SISVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPD  302 (345)
T ss_dssp             SEEEEEECTTT--------------------------------EEEEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TT
T ss_pred             CEEEEEeccCC--------------------------------EEEEEEEecCCCceEEEEEEeCCC--CCccEEEEeCC
Confidence            7 677765531                                2346677544 5543321112211  246777664  


Q ss_pred             CCEEEEeeCCCCeEEEeeCC
Q 017317          352 DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       352 ~g~L~vgs~~~~~i~~~~l~  371 (373)
                      ++.||+++..++.|..++++
T Consensus       303 g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  303 GRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEecCCCeEEEEEEe
Confidence            56899999999999999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.47  E-value=2e-10  Score=106.48  Aligned_cols=239  Identities=11%  Similarity=0.117  Sum_probs=145.9

Q ss_pred             CCcceEEEecCCC-EEEEe-cCCeEEEEE--cCCceEEee--eecCccccCeEECCCCc-EEEEECC-CcEEEEe--cCC
Q 017317           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT--EEG  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~--~~g~~~~~~--~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~--~~g  146 (373)
                      .+|..++++++|+ ||++. .+++|..++  .+|+.+...  ...+.|. +++++++|+ ||++... +.+..++  ++|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            5688999999876 67776 467887666  355554332  2345788 999999996 7777653 3455555  345


Q ss_pred             -c-EEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEE------eecC
Q 017317          147 -V-TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSI------LLDS  216 (373)
Q Consensus       147 -~-~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~------~~~~  216 (373)
                       . +.+. ...+  ...+..++++|+| .+|+++..                 .+.|..||.++ +....      ....
T Consensus       114 ~~~~~~~-~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~  173 (330)
T PRK11028        114 IPVAPIQ-IIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVE  173 (330)
T ss_pred             CCCCcee-eccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCC
Confidence             3 2221 1111  2357788999998 57777653                 35677776543 32211      1123


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecC-----CCCCCCceeECCCCC-EEEEEecCCCch
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVEN-----LPGGPDNIKLAPDGS-FWIAILQLSSPG  288 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~-----~~g~p~~i~~d~dG~-lwva~~~~~~~~  288 (373)
                      ...|.+++|+|||+++|+++...+.|..|+++..  .......+...     .+..+..+.++++|+ +|++.....   
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~---  250 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS---  250 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC---
Confidence            4568899999999999999988899999998632  21111111100     012344588999997 677644321   


Q ss_pred             hhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeC-CCCceecceeEEEEe--CCEEEEeeCCCCeE
Q 017317          289 LEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFED-PNGKVMSFVTSALEF--DDHLYLGSLNTNFI  365 (373)
Q Consensus       289 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i  365 (373)
                                                   ...++.++.++........ +.+.   .+..+..+  +.+||+++..++.|
T Consensus       251 -----------------------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        251 -----------------------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             -----------------------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcE
Confidence                                         1235566666644332221 1221   23344443  46899999888999


Q ss_pred             EEeeCC
Q 017317          366 GKLPLK  371 (373)
Q Consensus       366 ~~~~l~  371 (373)
                      ..++++
T Consensus       299 ~v~~~~  304 (330)
T PRK11028        299 SVYEID  304 (330)
T ss_pred             EEEEEc
Confidence            998875

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=2.1e-09  Score=95.40  Aligned_cols=243  Identities=14%  Similarity=0.204  Sum_probs=156.4

Q ss_pred             cCCcceEEEecCC-CEEEEec---CCeEEE--EEc-CCceEEeee--ecCcc-ccCeEECCCCc-EEEEECCCcEEEEe-
Q 017317           76 LNGPEDVCVDRNG-VLYTATR---DGWIKR--LHK-NGTWENWKL--IGGDT-LLGITTTQENE-ILVCDADKGLLKVT-  143 (373)
Q Consensus        76 ~~~P~~ia~d~~G-~l~v~~~---~g~I~~--~~~-~g~~~~~~~--~~~~p-~~gl~~d~~g~-L~va~~~~gl~~~~-  143 (373)
                      +..|.-|++++++ .||++..   .|+|..  +|+ +|+.+....  ..+.| . .+++|++|+ |++|.+..|.+.+. 
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence            6889999999976 7897653   577754  443 477765532  23444 6 999999996 67788776655554 


Q ss_pred             --cCC-cEEEe----eccCC--cc--ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          144 --EEG-VTVLA----SHVNG--SR--INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       144 --~~g-~~~l~----~~~~~--~~--~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                        .+| +....    ....+  ..  ...+....++|+|+ |++.|-+                 .-+|+.|+-+.++.+
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~  180 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLT  180 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccc
Confidence              356 43221    11111  11  11255677899995 5555543                 346776666556544


Q ss_pred             Ee----ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCC---------ceeECCCCCEE
Q 017317          212 IL----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPD---------NIKLAPDGSFW  278 (373)
Q Consensus       212 ~~----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~---------~i~~d~dG~lw  278 (373)
                      ..    ......|.-|+|+|+++..|+....++.|..|..++. .++++... ....+|.         .|.+++||++.
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ-~i~tlP~dF~g~~~~aaIhis~dGrFL  258 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQ-TIDTLPEDFTGTNWAAAIHISPDGRFL  258 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEee-eeccCccccCCCCceeEEEECCCCCEE
Confidence            32    2445667889999999999999999999998887653 34443332 1222222         36789999977


Q ss_pred             EEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEE--eCCCCceecceeEEEE--eCCE
Q 017317          279 IAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF--EDPNGKVMSFVTSALE--FDDH  354 (373)
Q Consensus       279 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~--~~~~g~~~~~~~~~~~--~~g~  354 (373)
                      .+++.+.+                               .-.++.++++|..+...  ..-.|.   .+..+..  +++.
T Consensus       259 YasNRg~d-------------------------------sI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~  304 (346)
T COG2706         259 YASNRGHD-------------------------------SIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRF  304 (346)
T ss_pred             EEecCCCC-------------------------------eEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCE
Confidence            77665532                               23478889887765543  233332   3444444  4578


Q ss_pred             EEEeeCCCCeEEEeeCCC
Q 017317          355 LYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       355 L~vgs~~~~~i~~~~l~~  372 (373)
                      |++.+-.+|.|.+|.++.
T Consensus       305 Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         305 LIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEEccCCCcEEEEEEcC
Confidence            999999999999998764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.38  E-value=3.3e-11  Score=111.26  Aligned_cols=159  Identities=23%  Similarity=0.302  Sum_probs=97.3

Q ss_pred             cCCcceEEEecCCCEEEEecCCeEEEEEcCCce-EEeeee-------cCccccCeEECCC----CcEEEEECC-------
Q 017317           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW-ENWKLI-------GGDTLLGITTTQE----NEILVCDAD-------  136 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~-~~~~~~-------~~~p~~gl~~d~~----g~L~va~~~-------  136 (373)
                      |..|++|++.|+|++|++...|+|++++.+|.. ..+...       ....+ ||+++++    +.||++...       
T Consensus         1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence            467999999999999999999999999977765 332221       12357 9999984    889998542       


Q ss_pred             --CcEEEEe-c-C-C----cEEEeeccCC--ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeC
Q 017317          137 --KGLLKVT-E-E-G----VTVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       137 --~gl~~~~-~-~-g----~~~l~~~~~~--~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  205 (373)
                        ..|.++. . . .    .+.+......  ...+....|+++|||.|||+.+....  ....++.  ....|.|+|+++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ilri~~  155 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTEEEEEET
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccceEEEecc
Confidence              2466666 2 2 1    2333332222  34456678999999999999765221  1111111  223578889887


Q ss_pred             CCC-------------eEEEeecCCCCcceEEEccCCCEEEEEeCCC
Q 017317          206 SLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       206 ~~~-------------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  239 (373)
                      ++.             ..+.++.++++|.+++|++....||+++.+.
T Consensus       156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence            754             3455677778888888887722366666443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.38  E-value=2.9e-09  Score=100.53  Aligned_cols=171  Identities=18%  Similarity=0.187  Sum_probs=114.1

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEec-CCeEEEEEcC-CceEEee-------e-ecCccccCeEECCC-------Cc
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHKN-GTWENWK-------L-IGGDTLLGITTTQE-------NE  129 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~~-g~~~~~~-------~-~~~~p~~gl~~d~~-------g~  129 (373)
                      +++.+++| +..|++|++.++|++||+.. .|+|++++.+ +..+.+.       . ..+.++ ||+++++       +.
T Consensus        21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~   98 (454)
T TIGR03606        21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence            56778877 89999999999999999997 5999999843 3322211       1 234567 9999865       35


Q ss_pred             EEEEE----------CCCcEEEEe-c-C-C----cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccc------cc
Q 017317          130 ILVCD----------ADKGLLKVT-E-E-G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGL------HN  186 (373)
Q Consensus       130 L~va~----------~~~gl~~~~-~-~-g----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~------~~  186 (373)
                      ||++-          ....|.|+. . . .    .+.+....+....+.-..|++++||.|||+........      ..
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            89873          123577765 2 1 1    23344433333446667899999999999976532110      00


Q ss_pred             cccc------c---ccccCCceEEEEeCCCC-----------eEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          187 WGLD------L---LEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       187 ~~~~------~---~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                      ..+.      .   ......|.|+|+|+++.           +.+++..++++|.|++|+|+|+ ||++|-+..
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~  251 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPN  251 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCC
Confidence            0110      0   11234689999998854           2356788999999999999876 999987653

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=8.2e-09  Score=96.24  Aligned_cols=229  Identities=17%  Similarity=0.254  Sum_probs=141.8

Q ss_pred             EEEEecC----CeEEEEE---cCCceEEee--eecCccccCeEECCCCc-EEEEECC----CcEEEEe--cC-C-cEEEe
Q 017317           90 LYTATRD----GWIKRLH---KNGTWENWK--LIGGDTLLGITTTQENE-ILVCDAD----KGLLKVT--EE-G-VTVLA  151 (373)
Q Consensus        90 l~v~~~~----g~I~~~~---~~g~~~~~~--~~~~~p~~gl~~d~~g~-L~va~~~----~gl~~~~--~~-g-~~~l~  151 (373)
                      +|+|+..    ++|+.+.   .+|+.+...  .....|. -|+++++++ ||++...    .++..+.  ++ | ++.+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps-~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPS-WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSEC-CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCc-eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            6888855    6887666   455554433  3467888 999998874 8888653    3565554  44 7 66665


Q ss_pred             eccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceE--EEEeCCCCeEEEe---e-----------
Q 017317          152 SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPSLNETSIL---L-----------  214 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~~~~~~~~---~-----------  214 (373)
                      ....  ....|..++++++|+ ||++...                 .|.+  +.++.+ +.....   .           
T Consensus        81 ~~~~--~g~~p~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~r  140 (345)
T PF10282_consen   81 SVPS--GGSSPCHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDR  140 (345)
T ss_dssp             EEEE--SSSCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTTT
T ss_pred             eecc--CCCCcEEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCC-cccceeeeecccCCCCCcccc
Confidence            4321  124577899999985 7887643                 2445  444443 443322   1           


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCC--CcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhh
Q 017317          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES--KEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEF  291 (373)
Q Consensus       215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~  291 (373)
                      .....|+.+.++|||+++|+++.+.++|+.|+++...  +.....+.-.....|+.++++++|+ +|+......      
T Consensus       141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------  214 (345)
T PF10282_consen  141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN------  214 (345)
T ss_dssp             TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT------
T ss_pred             cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC------
Confidence            1235678899999999999999999999999987643  3222222212334699999999996 677764331      


Q ss_pred             ccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcE--EEEEeC-CCC-ceecceeEEEEe--CCEEEEeeCCCCe
Q 017317          292 VHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIV--IRKFED-PNG-KVMSFVTSALEF--DDHLYLGSLNTNF  364 (373)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~--~~~~~~-~~g-~~~~~~~~~~~~--~g~L~vgs~~~~~  364 (373)
                                                ...++.++ .+|+.  +..+.. +.+ ........+..+  +..||+++...|.
T Consensus       215 --------------------------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  215 --------------------------TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             --------------------------EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             --------------------------cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence                                      23456666 45543  222222 111 111256677766  3589999999999


Q ss_pred             EEEeeCC
Q 017317          365 IGKLPLK  371 (373)
Q Consensus       365 i~~~~l~  371 (373)
                      |..++++
T Consensus       269 I~vf~~d  275 (345)
T PF10282_consen  269 ISVFDLD  275 (345)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999984

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.27  E-value=1.9e-08  Score=93.22  Aligned_cols=173  Identities=12%  Similarity=0.110  Sum_probs=109.4

Q ss_pred             CEEEEe-cCCeEEEEEc--CCceEEee--eecCccccCeEECCCCc-EEEEEC-CCcEEEEe--cCC-cEEEeeccCCcc
Q 017317           89 VLYTAT-RDGWIKRLHK--NGTWENWK--LIGGDTLLGITTTQENE-ILVCDA-DKGLLKVT--EEG-VTVLASHVNGSR  158 (373)
Q Consensus        89 ~l~v~~-~~g~I~~~~~--~g~~~~~~--~~~~~p~~gl~~d~~g~-L~va~~-~~gl~~~~--~~g-~~~l~~~~~~~~  158 (373)
                      .+|++. .++.|..++.  +|+.+...  ...+.+. .++++++|+ ||++.. ..++..++  ++| ++.......+  
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~--   79 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP--   79 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence            478775 5778888883  45544322  2346788 999999986 788754 35676665  356 5544322111  


Q ss_pred             ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC-CeE---EEeecCCCCcceEEEccCCCEEE
Q 017317          159 INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NET---SILLDSLFFANGVALSKDEDYLV  233 (373)
Q Consensus       159 ~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~---~~~~~~~~~~~gi~~~~dg~~l~  233 (373)
                       ..|..++++++|+ +|++...                 .+.|..|+.++ +..   .....+...|.+++++|+++++|
T Consensus        80 -~~p~~i~~~~~g~~l~v~~~~-----------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~  141 (330)
T PRK11028         80 -GSPTHISTDHQGRFLFSASYN-----------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW  141 (330)
T ss_pred             -CCceEEEECCCCCEEEEEEcC-----------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence             2467899999995 6776532                 35566565432 211   11123446689999999999999


Q ss_pred             EEeCCCCeEEEEEecCCC-Ccc--eeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          234 VCETFKFRCLKYWLKGES-KEQ--TEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~~~-~~~--~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      +++...+.|..|+++... ...  ...........|..++++++|+ +|+++.
T Consensus       142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence            999999999999986421 110  0011111234689999999997 567654

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.4e-08  Score=93.87  Aligned_cols=171  Identities=16%  Similarity=0.146  Sum_probs=104.5

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEecC-CeEEEEEcCC--------ceEEe----------------eeecCccccC
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRD-GWIKRLHKNG--------TWENW----------------KLIGGDTLLG  121 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~-g~I~~~~~~g--------~~~~~----------------~~~~~~p~~g  121 (373)
                      ..+.+++| +..|+.++..++|.+.+.... |.+..+...+        .....                +.....+. +
T Consensus        58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~  135 (399)
T COG2133          58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G  135 (399)
T ss_pred             eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence            45566677 899999999999965565544 6665554211        11111                11112344 5


Q ss_pred             eEECCCCcEEEEECCCcEEEEe-cCC----cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccc-----cc
Q 017317          122 ITTTQENEILVCDADKGLLKVT-EEG----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL-----DL  191 (373)
Q Consensus       122 l~~d~~g~L~va~~~~gl~~~~-~~g----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~-----~~  191 (373)
                      ++. ..+.+|+++. ..+.+++ .+.    .+.+....++...++-..|+++|||.|||+..+..........     .+
T Consensus       136 ~a~-~~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~  213 (399)
T COG2133         136 ISE-PGGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV  213 (399)
T ss_pred             EEe-ecCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence            555 3556777764 3566666 211    2344455555456778899999999999997653111111111     11


Q ss_pred             ccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeE
Q 017317          192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC  242 (373)
Q Consensus       192 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i  242 (373)
                      ++. ....++..|+.+...+++..++.+|.|++|+|....||+++.+...+
T Consensus       214 ~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         214 LRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             eee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence            111 12345666666666677888999999999999955699999877444

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=1.7e-08  Score=89.71  Aligned_cols=189  Identities=18%  Similarity=0.271  Sum_probs=121.8

Q ss_pred             CCcceEEEecCCC-EEEEec-CCeEEEEE--cCCceEE----eeeecC---------ccccCeEECCCCc-EEEEECC-C
Q 017317           77 NGPEDVCVDRNGV-LYTATR-DGWIKRLH--KNGTWEN----WKLIGG---------DTLLGITTTQENE-ILVCDAD-K  137 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~-~g~I~~~~--~~g~~~~----~~~~~~---------~p~~gl~~d~~g~-L~va~~~-~  137 (373)
                      ..|..+++|++|+ |+++.. .|.|.++.  .+|....    +.....         .++ ...++++|+ |+++|-+ .
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence            4568899999885 557764 45565554  4564321    111111         245 667889995 6666654 3


Q ss_pred             cEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317          138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (373)
Q Consensus       138 gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  214 (373)
                      .++.++ .+| ++...... -.+..+|..|+|.|+|. .|+...               ....-.+|.||+..++++.+.
T Consensus       168 ri~~y~~~dg~L~~~~~~~-v~~G~GPRHi~FHpn~k~aY~v~E---------------L~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAE-VKPGAGPRHIVFHPNGKYAYLVNE---------------LNSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             eEEEEEcccCccccccccc-cCCCCCcceEEEcCCCcEEEEEec---------------cCCEEEEEEEcCCCceEEEee
Confidence            566666 667 54432211 13445789999999996 577652               223345778888777777653


Q ss_pred             c---------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCC-CCCceeECCCCCEEEEEec
Q 017317          215 D---------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPG-GPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       215 ~---------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g-~p~~i~~d~dG~lwva~~~  283 (373)
                      .         +......|.+++||++||+++.+.+.|..|.++... +..+.+. ....| .|+.+.+++.|++.++...
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            2         223345688999999999999999999998876431 2222211 12334 5999999999998888765

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.19  E-value=1.1e-09  Score=102.43  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC--ccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeeccCC
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNG  156 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~~~~  156 (373)
                      ..+..|..|++|+|+.+| +++|+ ..|+.-.......  ... .+..|..|+|||++. .|++..++.|.+.. .....
T Consensus       168 ~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGTd-qGv~~~e~~G~~~s-n~~~~  243 (671)
T COG3292         168 VALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGTD-QGVYLQEAEGWRAS-NWGPM  243 (671)
T ss_pred             eeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEec-cceEEEchhhcccc-ccCCC
Confidence            457888999999999876 88887 4555443333222  234 777889999999985 78999885551111 11122


Q ss_pred             ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee----cCCCCcceEEEccCCCEE
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL----DSLFFANGVALSKDEDYL  232 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~----~~~~~~~gi~~~~dg~~l  232 (373)
                      .+...+..+..|.+|.+||++..                   +++|+...........    .+....+++..+.||+ |
T Consensus       244 lp~~~I~ll~qD~qG~lWiGTen-------------------Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-L  303 (671)
T COG3292         244 LPSGNILLLVQDAQGELWIGTEN-------------------GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-L  303 (671)
T ss_pred             CcchheeeeecccCCCEEEeecc-------------------cceeEecCCCCccccccccCCccccccceeeccCCC-E
Confidence            33345667788999999999753                   4666554433333221    1223346788888887 8


Q ss_pred             EEEeCCCCeEEEEE
Q 017317          233 VVCETFKFRCLKYW  246 (373)
Q Consensus       233 ~v~~~~~~~i~~~~  246 (373)
                      |+.+.  +++.+|.
T Consensus       304 Wv~t~--~giv~~~  315 (671)
T COG3292         304 WVGTY--GGIVRYL  315 (671)
T ss_pred             eeecc--CceEEEe
Confidence            88754  4566654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.17  E-value=6.6e-09  Score=97.58  Aligned_cols=208  Identities=16%  Similarity=0.157  Sum_probs=122.3

Q ss_pred             cceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCC------ceEEeeee--------cCccccCeEECCCCcE
Q 017317           66 QSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNG------TWENWKLI--------GGDTLLGITTTQENEI  130 (373)
Q Consensus        66 ~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g------~~~~~~~~--------~~~p~~gl~~d~~g~L  130 (373)
                      .+.+.+.++ +..|.+|++.++| ||+++. ..|+++. .++      +.+.+...        ...++ ++++++||.|
T Consensus        62 d~~~vfa~~-l~~p~Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~L  137 (367)
T TIGR02604        62 DKSNVFAEE-LSMVTGLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWL  137 (367)
T ss_pred             ceeEEeecC-CCCccceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCE
Confidence            344555555 7889999999888 999764 5688884 322      44444321        12366 9999999999


Q ss_pred             EEEECC--------------------CcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccc
Q 017317          131 LVCDAD--------------------KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG  188 (373)
Q Consensus       131 ~va~~~--------------------~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~  188 (373)
                      |++...                    .+++++++++  .++++.     .+..+++++++++|++|+++....  .....
T Consensus       138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~~~--~~~~i  210 (367)
T TIGR02604       138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDNDDP--PLCRV  210 (367)
T ss_pred             EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccCCC--ceeEE
Confidence            997541                    2478888544  565543     356789999999999999976321  11111


Q ss_pred             cccccccCCceEEE-----EeCCCC---eE---------------EEeecCCCCcceEEEcc-------CCCEEEEEeCC
Q 017317          189 LDLLEAKPHGKLLK-----YDPSLN---ET---------------SILLDSLFFANGVALSK-------DEDYLVVCETF  238 (373)
Q Consensus       189 ~~~~~~~~~g~l~~-----~d~~~~---~~---------------~~~~~~~~~~~gi~~~~-------dg~~l~v~~~~  238 (373)
                      ..+.+....|..+.     .++...   +.               .........|.|+++..       -...+++++..
T Consensus       211 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~  290 (367)
T TIGR02604       211 TPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAH  290 (367)
T ss_pred             cccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeecc
Confidence            11111100010000     000000   00               00011223578888873       22348999998


Q ss_pred             CCeEEEEEecCCC--Cc-ceeEEecCCC--CCCCceeECCCCCEEEEEecC
Q 017317          239 KFRCLKYWLKGES--KE-QTEIFVENLP--GGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       239 ~~~i~~~~~~~~~--~~-~~~~~~~~~~--g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .++|.++.++...  .. +...+.....  +.|..+.+++||.|||+++-.
T Consensus       291 ~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~  341 (367)
T TIGR02604       291 GQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYD  341 (367)
T ss_pred             CCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEecc
Confidence            9999999876321  21 1122322211  578899999999999999743

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.16  E-value=2e-07  Score=84.50  Aligned_cols=234  Identities=15%  Similarity=0.096  Sum_probs=138.4

Q ss_pred             CCcceEEEecCCC-EEEE-ecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC--cE
Q 017317           77 NGPEDVCVDRNGV-LYTA-TRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VT  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~-~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g--~~  148 (373)
                      ..|.+++++++|. +|+. ..++.|..++ .+++..........+. .++++++|+ +|++... +.+..++ .++  +.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            4578899999886 5654 4678899998 4455433222234466 788998886 6666443 4566677 444  22


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      .+.   .+   ..+.+++++++|.+++....                ....++.+|..+++..........+..+++++|
T Consensus       110 ~~~---~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  167 (300)
T TIGR03866       110 EIP---VG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD  167 (300)
T ss_pred             Eee---CC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence            221   11   23678999999987665432                112456678776654432222345788999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEec-C---CCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHHH
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-N---LPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLLA  303 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~---~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~~  303 (373)
                      ++.++++....+.+..|++...+......+.. .   ....|.+++++++|+. |++....                   
T Consensus       168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-------------------  228 (300)
T TIGR03866       168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-------------------  228 (300)
T ss_pred             CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-------------------
Confidence            99888876667789999876432211101110 0   1123567889999975 6654332                   


Q ss_pred             hcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe--CCEEEEeeCCCCeEEEeeCCC
Q 017317          304 AFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       304 ~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~~  372 (373)
                                     ..+..+|. +++....+..  +   ..+..+...  +..||+++..++.|.++++..
T Consensus       229 ---------------~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       229 ---------------NRVAVVDAKTYEVLDYLLV--G---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             ---------------CeEEEEECCCCcEEEEEEe--C---CCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence                           12455554 3555444321  1   124445543  357887766667788888763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=4.9e-09  Score=94.83  Aligned_cols=146  Identities=16%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             cCCcceEEEecCCCEEEEecC------------CeEEEEEcCCceEEeeee-cCccccCeEECCCC-cEEEEECC-CcEE
Q 017317           76 LNGPEDVCVDRNGVLYTATRD------------GWIKRLHKNGTWENWKLI-GGDTLLGITTTQEN-EILVCDAD-KGLL  140 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~~------------g~I~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g-~L~va~~~-~gl~  140 (373)
                      ...|..+.++++|++|+++..            |.|+++++.|+.+..... ...++ ||++++|| .||+++.. +.++
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i~  188 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRIH  188 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeEE
Confidence            567889999999999998754            579999987776665544 66789 99999999 69999876 5678


Q ss_pred             EEe-c--CC-c--E-EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317          141 KVT-E--EG-V--T-VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (373)
Q Consensus       141 ~~~-~--~g-~--~-~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  213 (373)
                      +++ .  ++ .  + .... .. .....|.++++|.+|++|++...                ..++|.+++|+++....+
T Consensus       189 r~~~d~~~g~~~~~~~~~~-~~-~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~i  250 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVD-FD-EEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGEI  250 (307)
T ss_pred             EEecCcccCccCCcceEEE-cc-CCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEEE
Confidence            886 3  23 1  1 1111 11 12236889999999999975322                124899999996555555


Q ss_pred             ecCCCCcceEEEc-cCCCEEEEEeCCCC
Q 017317          214 LDSLFFANGVALS-KDEDYLVVCETFKF  240 (373)
Q Consensus       214 ~~~~~~~~gi~~~-~dg~~l~v~~~~~~  240 (373)
                      .-....+...+|- ++.+.|||+....+
T Consensus       251 ~lP~~~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         251 KLPVKRPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             ECCCCCCccceEeCCCcCEEEEEecCCC
Confidence            5444666667764 67788999876553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.08  E-value=4e-08  Score=88.61  Aligned_cols=187  Identities=16%  Similarity=0.179  Sum_probs=115.8

Q ss_pred             CeEECCCCcEEEEECCC-------------cEEEEe-cCC--cEEEe-eccCCccccccceeEEcCC------CcEEEEe
Q 017317          121 GITTTQENEILVCDADK-------------GLLKVT-EEG--VTVLA-SHVNGSRINLADDLIAATD------GSIYFSV  177 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~-------------gl~~~~-~~g--~~~l~-~~~~~~~~~~~~~l~~~~d------G~l~v~~  177 (373)
                      ++.+|+.|+|||.|.+.             .|+.+| .++  ++.+. ....-.+..+.+++++|..      +.+|++|
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD   84 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD   84 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence            77888888898887542             477888 555  33321 1111123457889999862      5799999


Q ss_pred             CCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--------------------CcceEEEcc---CCCEEEE
Q 017317          178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--------------------FANGVALSK---DEDYLVV  234 (373)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--------------------~~~gi~~~~---dg~~l~v  234 (373)
                      .+                 .++|..||..+++...+.....                    ...|+++++   |++.||+
T Consensus        85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            75                 3578888888777655443211                    134677765   8889999


Q ss_pred             EeCCCCeEEEEEec---CCCCc-------ceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHh
Q 017317          235 CETFKFRCLKYWLK---GESKE-------QTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA  304 (373)
Q Consensus       235 ~~~~~~~i~~~~~~---~~~~~-------~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~  304 (373)
                      .-.....+++...+   .+...       .++.+. ...+..+++++|++|+||++....                    
T Consensus       148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~--------------------  206 (287)
T PF03022_consen  148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ--------------------  206 (287)
T ss_dssp             EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC--------------------
T ss_pred             EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC--------------------
Confidence            99888889888632   22211       122222 233456899999999999998764                    


Q ss_pred             cchhhhhccCCCccEEEEEECCCC-----cEEEEEeCCCCceecceeEEEEeC---CEEEEeeCC
Q 017317          305 FPKLIKLVAPLHKKAAVVNVAANG-----IVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSLN  361 (373)
Q Consensus       305 ~~~~~~~~~~~~~~g~v~~~~~~g-----~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~~  361 (373)
                                    ..|.++++++     +.....+++..  ..++.++...+   |+||+-+..
T Consensus       207 --------------~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  207 --------------NAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             --------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             --------------CeEEEEeCCCCcCccchheeEEcCce--eeccceeeeccccCceEEEEECc
Confidence                          2588999888     44455566553  46788888766   899998854

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.05  E-value=1.9e-09  Score=100.81  Aligned_cols=219  Identities=18%  Similarity=0.223  Sum_probs=124.8

Q ss_pred             CeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccc-cccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRI-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~-~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                      .+.+|..|+|||++. .|+++|+ ..| +-.+..    .++ ..++.+..|-+|++||++..                  
T Consensus       169 aLv~D~~g~lWvgT~-dGL~~fd~~~gkalql~s----~~~dk~I~al~~d~qg~LWVGTdq------------------  225 (671)
T COG3292         169 ALVFDANGRLWVGTP-DGLSYFDAGRGKALQLAS----PPLDKAINALIADVQGRLWVGTDQ------------------  225 (671)
T ss_pred             eeeeeccCcEEEecC-CcceEEccccceEEEcCC----CcchhhHHHHHHHhcCcEEEEecc------------------
Confidence            889999999999985 7999999 555 333322    222 45788889999999999753                  


Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcce----EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317          198 GKLLKYDPSLNETSILLDSLFFANG----VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~~g----i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  273 (373)
                       +++++++.+.+....  +...|.+    +.-|.+|. +|+...  +++.++....+.......-..........+..|.
T Consensus       226 -Gv~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiGTe--nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~  299 (671)
T COG3292         226 -GVYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIGTE--NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT  299 (671)
T ss_pred             -ceEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEeec--ccceeEecCCCCccccccccCCccccccceeecc
Confidence             789998876443322  2333433    23345554 777643  4577776544332211111101112346688999


Q ss_pred             CCCEEEEEecCCCch-----hh--hccCChHHH-HHHHhcchhhhh-ccCCCccEEEEEEC-CCCcEEEEEeCCCCceec
Q 017317          274 DGSFWIAILQLSSPG-----LE--FVHTSKATK-HLLAAFPKLIKL-VAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMS  343 (373)
Q Consensus       274 dG~lwva~~~~~~~~-----~~--~~~~~p~~~-~~~~~~~~~~~~-~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~  343 (373)
                      +|++|+++..+.-..     ..  ++.+.+-.- ....-.|..+.+ ..+....|.++..+ ..|..+.+.+...|.   
T Consensus       300 dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~---  376 (671)
T COG3292         300 DGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGM---  376 (671)
T ss_pred             CCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecccc---
Confidence            999999998753111     00  011111111 111112222221 11223333444444 567777776655553   


Q ss_pred             ceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          344 FVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       344 ~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      .++.++++ ++.+|+||. ++.++|++...
T Consensus       377 nit~~~~d~~g~lWlgs~-q~GLsrl~n~n  405 (671)
T COG3292         377 NITTTLEDSRGRLWLGSM-QNGLSRLDNKN  405 (671)
T ss_pred             ccchhhhccCCcEEEEec-ccchhhhccCC
Confidence            35555554 689999997 56688887653

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.03  E-value=1.6e-07  Score=95.08  Aligned_cols=183  Identities=17%  Similarity=0.201  Sum_probs=120.8

Q ss_pred             CcceEEEec-CCCEEEEe-cCCeEEEEEc------CCceEEeeee----------c-----------CccccCeEECCCC
Q 017317           78 GPEDVCVDR-NGVLYTAT-RDGWIKRLHK------NGTWENWKLI----------G-----------GDTLLGITTTQEN  128 (373)
Q Consensus        78 ~P~~ia~d~-~G~l~v~~-~~g~I~~~~~------~g~~~~~~~~----------~-----------~~p~~gl~~d~~g  128 (373)
                      .-..||++| +|.||+.+ ..-+|+++..      .+.++.++..          |           ..|. ||++|++|
T Consensus       408 h~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g  486 (1899)
T KOG4659|consen  408 HSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMG  486 (1899)
T ss_pred             ceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCC
Confidence            344599999 99999876 5567888861      2234444321          2           2478 99999999


Q ss_pred             cEEEEECCCcEEEEecCC-cEEEeec---------------cCCccccccceeEEcC-CCcEEEEeCCcccccccccccc
Q 017317          129 EILVCDADKGLLKVTEEG-VTVLASH---------------VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDL  191 (373)
Q Consensus       129 ~L~va~~~~gl~~~~~~g-~~~l~~~---------------~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~  191 (373)
                      .||.+|. ..|..+|.+| +..+...               .....+..|.+|+++| |+.+||-|.             
T Consensus       487 ~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~-------------  552 (1899)
T KOG4659|consen  487 NLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT-------------  552 (1899)
T ss_pred             cEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec-------------
Confidence            9999996 5677788888 6544321               1123566899999998 789999975             


Q ss_pred             ccccCCceEEEEeCCCCeEEEeecC---------------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          192 LEAKPHGKLLKYDPSLNETSILLDS---------------------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       192 ~~~~~~g~l~~~d~~~~~~~~~~~~---------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                            .-|+++++. .++..++..                     +..+..|+++++|. |||+|+...+|-+...-+.
T Consensus       553 ------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~t  624 (1899)
T KOG4659|consen  553 ------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLST  624 (1899)
T ss_pred             ------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEecc
Confidence                  467777765 455443221                     22346799999997 9999998766555432110


Q ss_pred             CCcceeEEec-------------------------CCCCCCCceeECCCCCEEEEEecC
Q 017317          251 SKEQTEIFVE-------------------------NLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       251 ~~~~~~~~~~-------------------------~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                       -+++..+..                         ..-..|..+|+.+||.++||..+.
T Consensus       625 -dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN  682 (1899)
T KOG4659|consen  625 -DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN  682 (1899)
T ss_pred             -CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence             011111110                         111247789999999999998764

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=6.2e-07  Score=84.64  Aligned_cols=187  Identities=20%  Similarity=0.249  Sum_probs=126.5

Q ss_pred             CCcceEEEecCC-CEEEEecC-CeEEEEEcC-CceEEeeeec-CccccCeEECCCCc-EEEEECC-CcEEEEe-cCCcEE
Q 017317           77 NGPEDVCVDRNG-VLYTATRD-GWIKRLHKN-GTWENWKLIG-GDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEGVTV  149 (373)
Q Consensus        77 ~~P~~ia~d~~G-~l~v~~~~-g~I~~~~~~-g~~~~~~~~~-~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g~~~  149 (373)
                      ..|..+++.++| .+|+.... ..+..++.. ...+.....+ ..|. ++++.+.|+ +|+.+.. +.+..++ ..- +.
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~  108 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TV  108 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccc-ce
Confidence            378999999977 88877633 345555422 1223222223 5688 999988885 9998754 4566666 222 12


Q ss_pred             EeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      ......|   ..|.+++++++| .+|+++...               .++.+..+|..+++..........|.+++++|+
T Consensus       109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~  170 (381)
T COG3391         109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPD  170 (381)
T ss_pred             eeEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCC
Confidence            2111122   268899999998 899998631               247899999988876655444446899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEE--ecCCCCCCCceeECCCCC-EEEEEecC
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIF--VENLPGGPDNIKLAPDGS-FWIAILQL  284 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~g~p~~i~~d~dG~-lwva~~~~  284 (373)
                      |+.+|+++...+++..++.++..... ...  .......|.++.++++|+ +|++....
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            99999999889999999966543221 110  112345799999999997 78887653

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.00  E-value=1.9e-07  Score=94.59  Aligned_cols=182  Identities=18%  Similarity=0.287  Sum_probs=123.1

Q ss_pred             cCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeec----CccccCeEECC-CCcEEEEECC-CcEEEEe---c--
Q 017317           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG----GDTLLGITTTQ-ENEILVCDAD-KGLLKVT---E--  144 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~----~~p~~gl~~d~-~g~L~va~~~-~gl~~~~---~--  144 (373)
                      +..|-.+|..+||.||+|+.+ -|.|+.++|++..+....    .... -||++| +|.|||.+.. +.++++.   +  
T Consensus       364 L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d  441 (1899)
T KOG4659|consen  364 LFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD  441 (1899)
T ss_pred             eeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCccc
Confidence            677999999999999999975 588998999887765432    2234 678885 8899999765 4577775   1  


Q ss_pred             -CC-cEEEeec----------------cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC
Q 017317          145 -EG-VTVLASH----------------VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (373)
Q Consensus       145 -~g-~~~l~~~----------------~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  206 (373)
                       .+ .+.++..                .....+.+|.+|++|.+|.|||+|+.                   +|-.+|..
T Consensus       442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~  502 (1899)
T KOG4659|consen  442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT  502 (1899)
T ss_pred             cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence             12 3444321                11235668999999999999999864                   45555543


Q ss_pred             CCeEEEee--------------------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec------
Q 017317          207 LNETSILL--------------------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE------  260 (373)
Q Consensus       207 ~~~~~~~~--------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------  260 (373)
                       +-+..+.                    -.+.+|..++++|=.+.|||.++  +-|+++...+.    ..+...      
T Consensus       503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~r----V~Ii~GrP~hC~  575 (1899)
T KOG4659|consen  503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHR----VRIILGRPTHCD  575 (1899)
T ss_pred             -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCcc----EEEEcCCccccc
Confidence             3333221                    12567899999997777999985  45777654322    111100      


Q ss_pred             --------------CCCCCCCceeECCCCCEEEEEecCC
Q 017317          261 --------------NLPGGPDNIKLAPDGSFWIAILQLS  285 (373)
Q Consensus       261 --------------~~~g~p~~i~~d~dG~lwva~~~~~  285 (373)
                                    ...-.+..|++..+|-|||+...++
T Consensus       576 ~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r  614 (1899)
T KOG4659|consen  576 LANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR  614 (1899)
T ss_pred             cCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence                          0011367799999999999998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.97  E-value=2.9e-06  Score=76.83  Aligned_cols=167  Identities=15%  Similarity=0.144  Sum_probs=101.5

Q ss_pred             CCEEE-EecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC-cEEEeeccCCccccc
Q 017317           88 GVLYT-ATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINL  161 (373)
Q Consensus        88 G~l~v-~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~  161 (373)
                      +++|+ +..++.|.+++ .+++..........+. +++++++|+ +|++... ..+..++ .++ .......  +   ..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~---~~   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--G---PD   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--C---CC
Confidence            35664 45688899998 4555433333345678 999999986 6666443 4567777 555 3221111  1   22


Q ss_pred             cceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       162 ~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                      +..++++++|+ +|++...                 .+.|..+|..+++..........+.++++++||+.++++.....
T Consensus        75 ~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~  137 (300)
T TIGR03866        75 PELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN  137 (300)
T ss_pred             ccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence            45788999986 6666432                 36788999876654333332345789999999997777665444


Q ss_pred             eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE-EEE
Q 017317          241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW-IAI  281 (373)
Q Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw-va~  281 (373)
                      .++.++......  ....  .....|..++++++|+.+ ++.
T Consensus       138 ~~~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       138 MAHFIDTKTYEI--VDNV--LVDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             eEEEEeCCCCeE--EEEE--EcCCCccEEEECCCCCEEEEEc
Confidence            566666543211  1111  122357778899999754 443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=8.3e-07  Score=83.77  Aligned_cols=184  Identities=19%  Similarity=0.222  Sum_probs=124.8

Q ss_pred             cCCcceEEEecCCC-EEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECC---CcEEEEe-cCCc
Q 017317           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD---KGLLKVT-EEGV  147 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~---~gl~~~~-~~g~  147 (373)
                      ...|.++++.+.|. +|+.+ .++.|.+++ ...+.......+..|. +++++++| .+||++..   +.+..++ .++ 
T Consensus        73 ~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-  150 (381)
T COG3391          73 GVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATN-  150 (381)
T ss_pred             CccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCC-
Confidence            37799999988665 99766 458899998 3333333333445899 99999888 79999873   3466676 333 


Q ss_pred             EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-----eecCCCCcc
Q 017317          148 TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFAN  221 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----~~~~~~~~~  221 (373)
                      +.......|   ..|.+++++++|. +|+++..                 .+.|..+|.++.....     .......|.
T Consensus       151 ~~~~~~~vG---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~  210 (381)
T COG3391         151 KVTATIPVG---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPA  210 (381)
T ss_pred             eEEEEEecC---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCCCcceeccccccccccCCCCc
Confidence            111112222   1457899999996 9999843                 4789999987665543     234467789


Q ss_pred             eEEEccCCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEec
Q 017317          222 GVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQ  283 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~  283 (373)
                      ++++++||+.+|+++..+  +.+.+++............. ... .|.+++.+++|.. |++...
T Consensus       211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecC
Confidence            999999999999999887  58888886543222111111 122 5888999999975 555333

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.81  E-value=1.7e-05  Score=73.06  Aligned_cols=247  Identities=11%  Similarity=-0.018  Sum_probs=129.2

Q ss_pred             CCEEEEecC-----CeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEEC---------C-CcEEEEe-cCC--c
Q 017317           88 GVLYTATRD-----GWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDA---------D-KGLLKVT-EEG--V  147 (373)
Q Consensus        88 G~l~v~~~~-----g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~---------~-~gl~~~~-~~g--~  147 (373)
                      .++|+.+..     ++|.++| .++++......+.+|. ++ +.+|| .||||..         . ..|-.+| .++  .
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            456665533     8899999 4555544445677899 86 88888 5899976         3 2355566 444  2


Q ss_pred             EEEeeccC--CccccccceeEEcCCC-cEEEEeCCccccccc-------c-------cc--ccccccCCceEEEEeCCC-
Q 017317          148 TVLASHVN--GSRINLADDLIAATDG-SIYFSVASTKFGLHN-------W-------GL--DLLEAKPHGKLLKYDPSL-  207 (373)
Q Consensus       148 ~~l~~~~~--~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~-------~-------~~--~~~~~~~~g~l~~~d~~~-  207 (373)
                      ..+.....  ......+..+++++|| .+||++.+-.....-       .       .+  .....+....+.+.|... 
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~  170 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA  170 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE
Confidence            22211100  0113456788999999 589886431010000       0       00  000111111222222211 


Q ss_pred             -------CeEEE----eecC-----CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEe---cC---CCC
Q 017317          208 -------NETSI----LLDS-----LFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV---EN---LPG  264 (373)
Q Consensus       208 -------~~~~~----~~~~-----~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~~---~~g  264 (373)
                             ++...    +...     +..|   .+++ ||+.+|++..  +.|+.+++.+........+.   ..   ...
T Consensus       171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w  245 (352)
T TIGR02658       171 KVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW  245 (352)
T ss_pred             EEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccccccc
Confidence                   11110    1111     1222   3455 8887777765  78999997655333222221   11   012


Q ss_pred             CCCc---eeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCC
Q 017317          265 GPDN---IKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNG  339 (373)
Q Consensus       265 ~p~~---i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g  339 (373)
                      .|.+   ++++++| ++||+..++...    -                     ...+...+..+| ..++.+..+..  |
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~----t---------------------hk~~~~~V~ViD~~t~kvi~~i~v--G  298 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKW----T---------------------HKTASRFLFVVDAKTGKRLRKIEL--G  298 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccc----c---------------------ccCCCCEEEEEECCCCeEEEEEeC--C
Confidence            5666   8999887 689976543100    0                     011122466677 45666666653  2


Q ss_pred             ceecceeEEEEe--CC-EEEEeeCCCCeEEEeeCC
Q 017317          340 KVMSFVTSALEF--DD-HLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       340 ~~~~~~~~~~~~--~g-~L~vgs~~~~~i~~~~l~  371 (373)
                      .   .+..+...  +. .||+.+-.++.|..++..
T Consensus       299 ~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       299 H---EIDSINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             C---ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence            2   34455544  45 788888778889998865

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.81  E-value=5.1e-06  Score=80.40  Aligned_cols=187  Identities=13%  Similarity=0.158  Sum_probs=127.3

Q ss_pred             CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--
Q 017317           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--  146 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--  146 (373)
                      |-+..-.++++.|||.+. +|..+|.|..++ ..|- +.+|.+...... ++.+...|+..++.. .+.+..+| ...  
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            445566789999999888 567899999998 3442 455555555666 899999998777643 34455566 333  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~  225 (373)
                      .+.+....   + .....+++||.|.|.++.+.                ..-.|+.++.++|+...++.+...| .+++|
T Consensus       427 fRTft~P~---p-~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f  486 (893)
T KOG0291|consen  427 FRTFTSPE---P-IQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSF  486 (893)
T ss_pred             eeeecCCC---c-eeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence            44443211   1 23458899999999888653                2346888898999887777777766 57999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCC
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLS  285 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~  285 (373)
                      +++++ ++++.+++..|..+++-+. .++.+.+.  ...-.-++++-+|| .+-|+|..+.
T Consensus       487 ~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  487 SPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             ccccC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecce
Confidence            99999 7888888888888876442 22333322  11123456777888 4888888764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.79  E-value=1.9e-06  Score=75.55  Aligned_cols=193  Identities=16%  Similarity=0.161  Sum_probs=107.1

Q ss_pred             CCcCCcceEEEec-CCCEE-EEecCCeEEEEEcCCceEEee-e-ecCccccCeEECCCCcEEEEEC-CCcEEEEe-c-CC
Q 017317           74 GILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWK-L-IGGDTLLGITTTQENEILVCDA-DKGLLKVT-E-EG  146 (373)
Q Consensus        74 g~~~~P~~ia~d~-~G~l~-v~~~~g~I~~~~~~g~~~~~~-~-~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~-~g  146 (373)
                      |....+.+|++++ ++.|| |.+..+.|+.++.+|++.... . ..+.+- ||+.-.+|.+.+++. .+.++.++ . .+
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            4345689999998 57799 666889999999888753322 1 235678 999887777777764 35576666 2 22


Q ss_pred             --cE-----EEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeC--CCCeEEEee--
Q 017317          147 --VT-----VLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETSILL--  214 (373)
Q Consensus       147 --~~-----~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~--  214 (373)
                        ..     .+.............+|+.|+. +++|++...                ...+|+.++.  .........  
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~  161 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQ  161 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-H
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeecccc
Confidence              21     1111222223345789999987 478887432                2246777775  222222211  


Q ss_pred             ------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCC------CCCCceeECCCCCEEEEEe
Q 017317          215 ------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP------GGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       215 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------g~p~~i~~d~dG~lwva~~  282 (373)
                            .....+.+++++|..+++|+-+....+|..++.+|.-.... .......      --|.||++|++|+|||..-
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence                  12445789999999989999999999999999666422211 1111000      1488999999999999986


Q ss_pred             cC
Q 017317          283 QL  284 (373)
Q Consensus       283 ~~  284 (373)
                      ..
T Consensus       241 pN  242 (248)
T PF06977_consen  241 PN  242 (248)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.73  E-value=4.5e-06  Score=78.23  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=94.6

Q ss_pred             cceEEEecCCC-EEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC--cEEEe
Q 017317           79 PEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VTVLA  151 (373)
Q Consensus        79 P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g--~~~l~  151 (373)
                      +..+++.+||+ +|+.+.+|.|.++| .+++.......+..|. ++++++||+ +|++... ..+..+| ++.  ++.+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            45567788776 88888899999999 4555544445677899 999999997 6667543 4577777 444  33332


Q ss_pred             ec-cC-CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEeecCCCCcceEEEcc
Q 017317          152 SH-VN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGVALSK  227 (373)
Q Consensus       152 ~~-~~-~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~~gi~~~~  227 (373)
                      .. .. +.+...+.+|...+....|+....                ..+.++.+|....+  .........+|.+..+++
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecccccccccccCc
Confidence            21 11 112234556777777775655322                35789999865432  222334456788999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecC
Q 017317          228 DEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ++++++++....+.+..++...
T Consensus       182 dgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  182 DGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTT
T ss_pred             ccceeeecccccceeEEEeecc
Confidence            9999999887788888888554

...

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.72  E-value=2.4e-06  Score=77.49  Aligned_cols=180  Identities=21%  Similarity=0.296  Sum_probs=109.2

Q ss_pred             EeccCCcCCcceEEEecC-CCEEEEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCCc
Q 017317           70 RLGEGILNGPEDVCVDRN-GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGV  147 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~-G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~  147 (373)
                      .+....+.+||.+.+|+. +--|++-.+|+|.++.. +..+..+......++         .-.+++.    ..++   .
T Consensus        47 l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~---------~~~~~~~----~~~~---~  110 (376)
T KOG1520|consen   47 LIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTN---------RSQCCDP----GSFE---T  110 (376)
T ss_pred             cccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecccccc---------ccccCCC----ccee---c
Confidence            334444789999999984 45788888999988873 122333322110111         0001110    0000   0


Q ss_pred             EEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----CCCCcc
Q 017317          148 TVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFAN  221 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~~~~~  221 (373)
                      +.+        -..|-+|+++..| .+||+|..                  =+|+.++++++..+.+.+     .+.+.|
T Consensus       111 e~~--------CGRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N  164 (376)
T KOG1520|consen  111 EPL--------CGRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLN  164 (376)
T ss_pred             ccc--------cCCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecC
Confidence            111        1356789999887 99999986                  479999999888665543     245679


Q ss_pred             eEEEccCCCEEEEEeCCC-----------------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          222 GVALSKDEDYLVVCETFK-----------------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ++.++++|. +|++++..                 +|+.+||..   ....+++.+++ .+|+|+++++|+.+.+-+..+
T Consensus       165 ~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~---tK~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~  239 (376)
T KOG1520|consen  165 DLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS---TKVTKVLLDGL-YFPNGLALSPDGSFVLVAETT  239 (376)
T ss_pred             ceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEEecCc---ccchhhhhhcc-cccccccCCCCCCEEEEEeec
Confidence            999999765 99998753                 355566532   22333444333 479999999999876665544


Q ss_pred             CCchhhhccCCh
Q 017317          285 SSPGLEFVHTSK  296 (373)
Q Consensus       285 ~~~~~~~~~~~p  296 (373)
                      ...+.+++-+.|
T Consensus       240 ~~ri~rywi~g~  251 (376)
T KOG1520|consen  240 TARIKRYWIKGP  251 (376)
T ss_pred             cceeeeeEecCC
Confidence            334444444333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.69  E-value=9.4e-05  Score=69.90  Aligned_cols=140  Identities=14%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR  158 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~  158 (373)
                      .+++ ++.+|+++.+|.|+.++ .+|+..-.....+....+.+.+ ++.+|+++..+.++.+| .+| ...- ....+..
T Consensus        61 p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~  137 (377)
T TIGR03300        61 PAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWR-AKLSSEV  137 (377)
T ss_pred             eEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeee-eccCcee
Confidence            3555 78999999999999999 6786532222222222145554 67899987766789999 678 4322 2222211


Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC------cceEEEccCCCEE
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF------ANGVALSKDEDYL  232 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~------~~gi~~~~dg~~l  232 (373)
                      ..   ...+ .++.+|+...                  .+.|+.+|.++++...-......      .....+. + +.+
T Consensus       138 ~~---~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v  193 (377)
T TIGR03300       138 LS---PPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGV  193 (377)
T ss_pred             ec---CCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEE
Confidence            11   1122 2567887653                  37899999887765432211100      0111222 3 345


Q ss_pred             EEEeCCCCeEEEEEecC
Q 017317          233 VVCETFKFRCLKYWLKG  249 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~~  249 (373)
                      |+.. .+..++.++...
T Consensus       194 ~~~~-~~g~v~ald~~t  209 (377)
T TIGR03300       194 LVGF-AGGKLVALDLQT  209 (377)
T ss_pred             EEEC-CCCEEEEEEccC
Confidence            5553 456788888643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.60  E-value=7.6e-05  Score=65.37  Aligned_cols=194  Identities=16%  Similarity=0.167  Sum_probs=115.3

Q ss_pred             cCCcCCcceEEEec-CCCEE-EEecCCeEEEEEcCCceEEee-e-ecCccccCeEECCCCcEEEEECC-CcEEEEe--cC
Q 017317           73 EGILNGPEDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWK-L-IGGDTLLGITTTQENEILVCDAD-KGLLKVT--EE  145 (373)
Q Consensus        73 ~g~~~~P~~ia~d~-~G~l~-v~~~~g~I~~~~~~g~~~~~~-~-~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~--~~  145 (373)
                      .|....-.++.+++ +..|| +.+....|+.++.+|++-... . ....|- +|..-.+|...+++.. ..++.+.  .+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            34445567899998 55677 444667899999888754332 1 234567 7777655555555433 3444443  33


Q ss_pred             C-cEEEee-----ccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--
Q 017317          146 G-VTVLAS-----HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--  216 (373)
Q Consensus       146 g-~~~l~~-----~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--  216 (373)
                      + ......     ........+-.+++.|+.. ++||+-..               ++ -+||.++............  
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr---------------~P-~~I~~~~~~~~~l~~~~~~~~  224 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER---------------NP-IGIFEVTQSPSSLSVHASLDP  224 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc---------------CC-cEEEEEecCCcccccccccCc
Confidence            3 211111     1111223456789999865 89998532               22 4677776432222211100  


Q ss_pred             -------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC------CCCceeECCCCCEEEEEec
Q 017317          217 -------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG------GPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       217 -------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g------~p~~i~~d~dG~lwva~~~  283 (373)
                             +..-.|+.+++..+.|+|-......+..++.+|...+... ......|      .+.|+++|.+|+||+....
T Consensus       225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls-L~~g~~gL~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS-LTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE-eccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence                   1234688899888889988878888999988776322111 1111111      3788999999999999876


Q ss_pred             C
Q 017317          284 L  284 (373)
Q Consensus       284 ~  284 (373)
                      +
T Consensus       304 n  304 (316)
T COG3204         304 N  304 (316)
T ss_pred             C
Confidence            5

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.58  E-value=0.00013  Score=64.42  Aligned_cols=176  Identities=18%  Similarity=0.190  Sum_probs=109.2

Q ss_pred             ceEEEecCC-CEEEEecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--cEEEee
Q 017317           80 EDVCVDRNG-VLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        80 ~~ia~d~~G-~l~v~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--~~~l~~  152 (373)
                      ..+.+.+++ .++++..+|.|..++...  ....+........ .+.+.++++++++.. .+.+..++ .++  ...+..
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  133 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG  133 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence            367777776 566777899999998433  2333333233456 888988888777655 45567777 444  222221


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCE
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY  231 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~  231 (373)
                           ....+..+.+.+++.++++...                 .+.|..+|..+++...... .......+.++++++.
T Consensus       134 -----~~~~i~~~~~~~~~~~l~~~~~-----------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         134 -----HTDWVNSVAFSPDGTFVASSSQ-----------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             -----CCCcEEEEEEcCcCCEEEEEcC-----------------CCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence                 1124678899998877666431                 3678888876554333222 2234678999999986


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++++.. ++.+..|++.....  ...+. ........+++++++.++++..
T Consensus       192 l~~~~~-~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         192 LLSSSS-DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEecC-CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            777765 67888888753211  11111 1123456688888887777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.55  E-value=0.00029  Score=62.19  Aligned_cols=180  Identities=20%  Similarity=0.246  Sum_probs=106.3

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEc-CCce-EEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~-~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l  150 (373)
                      ...++.+.+++.+. ++..+|.|..++. +++. ........... .+.+.++++ ++++...+.+..++ .++  ...+
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            34677888876555 6777899988883 3332 22222223334 778888884 55555455567777 443  3333


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg  229 (373)
                      ...     ...+..+.+.+++.++++...                 .+.+..+|..+++...... .......+++++++
T Consensus        90 ~~~-----~~~i~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  147 (289)
T cd00200          90 TGH-----TSYVSSVAFSPDGRILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG  147 (289)
T ss_pred             ecc-----CCcEEEEEEcCCCCEEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence            211     124677888888887777542                 3788888887555443333 22345788999997


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecC
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQL  284 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~  284 (373)
                      +. +++...++.+..|++...+.  ...+. ........+.++++|+ ++++...+
T Consensus       148 ~~-l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~  199 (289)
T cd00200         148 TF-VASSSQDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSSDG  199 (289)
T ss_pred             CE-EEEEcCCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecCCC
Confidence            74 44444466788888753321  11222 2223466788888884 55555433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.51  E-value=0.00014  Score=68.30  Aligned_cols=168  Identities=14%  Similarity=0.179  Sum_probs=96.2

Q ss_pred             EEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeeccCCccccccc
Q 017317           90 LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLAD  163 (373)
Q Consensus        90 l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~  163 (373)
                      +|+.. .+|.|..+| .+.+........+.++.++++.+||+ +||++....+..+| .++  +..+.   .|   ..+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~~~   81 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GNPR   81 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CCcc
Confidence            34555 578999998 33443333333444442678889896 89998766788888 554  33332   12   3577


Q ss_pred             eeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC--------CCcceEEEccCCCEEEE
Q 017317          164 DLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--------FFANGVALSKDEDYLVV  234 (373)
Q Consensus       164 ~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------~~~~gi~~~~dg~~l~v  234 (373)
                      ++++++||+ +|+++..                 .+.+..+|.++.+........        ....+|.-++.+...++
T Consensus        82 ~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv  144 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV  144 (369)
T ss_dssp             EEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred             eEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence            899999995 6777542                 468899998876644322211        12246667788775555


Q ss_pred             EeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          235 CETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +-...+.|+..+....+..... .. ....+|.+..+|++|+++++..
T Consensus       145 ~lkd~~~I~vVdy~d~~~~~~~-~i-~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  145 NLKDTGEIWVVDYSDPKNLKVT-TI-KVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EETTTTEEEEEETTTSSCEEEE-EE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred             EEccCCeEEEEEecccccccee-ee-cccccccccccCcccceeeecc
Confidence            6566688998886554221111 11 2234788899999998766543

...

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.48  E-value=2e-05  Score=77.13  Aligned_cols=214  Identities=15%  Similarity=0.220  Sum_probs=131.3

Q ss_pred             cCCeEEEEEcCCc------eEEeeee-cCccccCeEEC-CCCcEEEEECC-CcEEEEecCC--cEEEeeccCCccccccc
Q 017317           95 RDGWIKRLHKNGT------WENWKLI-GGDTLLGITTT-QENEILVCDAD-KGLLKVTEEG--VTVLASHVNGSRINLAD  163 (373)
Q Consensus        95 ~~g~I~~~~~~g~------~~~~~~~-~~~p~~gl~~d-~~g~L~va~~~-~gl~~~~~~g--~~~l~~~~~~~~~~~~~  163 (373)
                      ..+.|.++..+|.      .+.+... ..-++ ||.+| ++..+|..|.. ..|-+-.-.|  -+.+..    ..+..|.
T Consensus       997 qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----~~L~SPE 1071 (1289)
T KOG1214|consen  997 QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----SGLISPE 1071 (1289)
T ss_pred             ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec----ccCCCcc
Confidence            4456776664441      1222222 34467 99999 45567766643 3344433223  333322    2345788


Q ss_pred             eeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--C
Q 017317          164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--F  240 (373)
Q Consensus       164 ~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~  240 (373)
                      +|++|--+ ++|.+|+..               ..-.+-.+|.. .+...+.+++-+|.+|++++-+..|||+++.+  -
T Consensus      1072 GiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenP 1135 (1289)
T KOG1214|consen 1072 GIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENP 1135 (1289)
T ss_pred             ceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccccccCC
Confidence            99999766 799998741               11235556643 22223457889999999999998999999865  4


Q ss_pred             eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE--EEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317          241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF--WIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK  318 (373)
Q Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l--wva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  318 (373)
                      .|-+-+++|+   ..++++...-++|+|+.+|+.-++  ||-....|                                 
T Consensus      1136 kIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~r--------------------------------- 1179 (1289)
T KOG1214|consen 1136 KIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKR--------------------------------- 1179 (1289)
T ss_pred             cceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEecCCcc---------------------------------
Confidence            6777788875   345677666789999999987753  66543321                                 


Q ss_pred             EEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          319 AAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       319 g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                        +..+.++|.-.+...  ++  ...+-++....+++|...++.|+|..+++.
T Consensus      1180 --leC~~p~g~gRR~i~--~~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~~ 1226 (1289)
T KOG1214|consen 1180 --LECTLPDGTGRRVIQ--NN--LQYPFSITSYADHFYHTDWKRNGVVSVNKH 1226 (1289)
T ss_pred             --eeEecCCCCcchhhh--hc--ccCceeeeeccccceeeccccCceEEeecc
Confidence              344555554333221  12  224455555556688888888888777654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.48  E-value=1.9e-05  Score=71.30  Aligned_cols=186  Identities=20%  Similarity=0.265  Sum_probs=107.1

Q ss_pred             cceEEEecCCCEEEEec-------------CCeEEEEE-cCCce-EEeeee------cCccccCeEECC-C-----CcEE
Q 017317           79 PEDVCVDRNGVLYTATR-------------DGWIKRLH-KNGTW-ENWKLI------GGDTLLGITTTQ-E-----NEIL  131 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~-------------~g~I~~~~-~~g~~-~~~~~~------~~~p~~gl~~d~-~-----g~L~  131 (373)
                      .-.+.+|+.|+||+-+.             .-+|+.+| .+++. +.+...      .+... .+++|. +     +..|
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEE
Confidence            34688999999996431             13789999 45543 233211      12334 677774 2     4689


Q ss_pred             EEECC-CcEEEEe-cCC--cEEEeecc-----------CCcccc---ccceeEEcC---CC-cEEEEeCCcccccccccc
Q 017317          132 VCDAD-KGLLKVT-EEG--VTVLASHV-----------NGSRIN---LADDLIAAT---DG-SIYFSVASTKFGLHNWGL  189 (373)
Q Consensus       132 va~~~-~gl~~~~-~~g--~~~l~~~~-----------~~~~~~---~~~~l~~~~---dG-~l~v~~~~~~~~~~~~~~  189 (373)
                      ++|.. .||+.+| .+|  .+++....           .|..+.   .+.+++..+   +| .||+.-.+          
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls----------  151 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS----------  151 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT----------
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC----------
Confidence            99876 5899999 776  44443211           111111   234455543   44 47776532          


Q ss_pred             ccccccCCceEEEEeCC------C-------CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCC-Ccce
Q 017317          190 DLLEAKPHGKLLKYDPS------L-------NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES-KEQT  255 (373)
Q Consensus       190 ~~~~~~~~g~l~~~d~~------~-------~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~-~~~~  255 (373)
                             ...+|++..+      .       .+++.+........|++++++|. ||+++...+.|.+++.+++- ....
T Consensus       152 -------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~  223 (287)
T PF03022_consen  152 -------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENF  223 (287)
T ss_dssp             --------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCE
T ss_pred             -------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccch
Confidence                   1346666421      0       11233333334568999999887 99999999999999976531 1233


Q ss_pred             eEEecCC--CCCCCceeECC--CCCEEEEEec
Q 017317          256 EIFVENL--PGGPDNIKLAP--DGSFWIAILQ  283 (373)
Q Consensus       256 ~~~~~~~--~g~p~~i~~d~--dG~lwva~~~  283 (373)
                      +.+..+.  -..|+++.++.  +|.||+.++.
T Consensus       224 ~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  224 EILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             heeEEcCceeeccceeeeccccCceEEEEECc
Confidence            4444332  35799999999  9999999865

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00013  Score=70.43  Aligned_cols=176  Identities=12%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             eEEEecCCC-EE-EEecC--CeEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEE-ECCC--cEEEEe-cCC-cEE
Q 017317           81 DVCVDRNGV-LY-TATRD--GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVC-DADK--GLLKVT-EEG-VTV  149 (373)
Q Consensus        81 ~ia~d~~G~-l~-v~~~~--g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~~--gl~~~~-~~g-~~~  149 (373)
                      +..+.|||+ |+ +...+  ..|+.++. .|+.+.+....+... ..++.+||+ |+++ +..+  .|+.++ .++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            346777776 33 33333  36888884 455554443333445 678899996 5544 3222  388888 566 554


Q ss_pred             EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      +....     .......+++||+ |+++...               .....||++|.++++.+.+........+.+++||
T Consensus       301 lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        301 ITRHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             CccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence            43211     1234567889995 6555321               1234799999888876655322223345789999


Q ss_pred             CCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          229 EDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       229 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      |+.++++....  ..|+++++++...   ......  .......+++||+ |+++..
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~--~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGAM---QVLTST--RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCCe---EEccCC--CCCCCceECCCCCEEEEEEe
Confidence            99998876543  3677777665432   222211  1122346778886 444443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.45  E-value=0.001  Score=63.32  Aligned_cols=140  Identities=16%  Similarity=0.144  Sum_probs=78.7

Q ss_pred             EEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC-----------ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cE
Q 017317           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VT  148 (373)
Q Consensus        83 a~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-----------~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~  148 (373)
                      +++ +|.+|+++.+|.++.+| .+|+..-......           ....+++++ ++++|+++....++.+| ++| ..
T Consensus        66 vv~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         66 AVA-YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             EEE-CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEcCCCEEEEEECCCCCCc
Confidence            444 78999999999999999 5676432111111           111134443 67899987666789999 678 43


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-C-----Ccce
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-F-----FANG  222 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~-----~~~g  222 (373)
                      .-. ...+.....|   .+. +|.+|+.+.                  .+.|+.+|.++|+...-.... .     ....
T Consensus       144 W~~-~~~~~~~ssP---~v~-~~~v~v~~~------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~s  200 (394)
T PRK11138        144 WQT-KVAGEALSRP---VVS-DGLVLVHTS------------------NGMLQALNESDGAVKWTVNLDVPSLTLRGESA  200 (394)
T ss_pred             ccc-cCCCceecCC---EEE-CCEEEEECC------------------CCEEEEEEccCCCEeeeecCCCCcccccCCCC
Confidence            322 1222111111   222 678888754                  378999999888765322211 0     0011


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      -++. + +.+|+.. .++.++.++....
T Consensus       201 P~v~-~-~~v~~~~-~~g~v~a~d~~~G  225 (394)
T PRK11138        201 PATA-F-GGAIVGG-DNGRVSAVLMEQG  225 (394)
T ss_pred             CEEE-C-CEEEEEc-CCCEEEEEEccCC
Confidence            1222 2 3466654 4567888876543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.43  E-value=4.3e-05  Score=72.67  Aligned_cols=178  Identities=19%  Similarity=0.265  Sum_probs=100.7

Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-------c-CCCCcceEEEccCC-
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-------D-SLFFANGVALSKDE-  229 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-------~-~~~~~~gi~~~~dg-  229 (373)
                      +..|.+|++.|||++||+..                 ..|+|+++++.++..+.+.       . +.....||+++|+- 
T Consensus        29 L~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~   91 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM   91 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence            45789999999999999963                 1489999987665433221       1 23445789999874 


Q ss_pred             -----CEEEEEeCC---------CCeEEEEEecCC--CCcceeEEecCCCC----CCCceeECCCCCEEEEEecCCCch-
Q 017317          230 -----DYLVVCETF---------KFRCLKYWLKGE--SKEQTEIFVENLPG----GPDNIKLAPDGSFWIAILQLSSPG-  288 (373)
Q Consensus       230 -----~~l~v~~~~---------~~~i~~~~~~~~--~~~~~~~~~~~~~g----~p~~i~~d~dG~lwva~~~~~~~~-  288 (373)
                           +++|++-+.         ..+|.||.++..  .....+.+....+.    .-..|++++||.|||++....... 
T Consensus        92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~  171 (454)
T TIGR03606        92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQG  171 (454)
T ss_pred             ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCc
Confidence                 468887522         468999887532  23333333333332    123488999999999987642110 


Q ss_pred             hhhccCChHHHHHHHhcchhhhhc--cCCCccEEEEEECCCCcEE-----------EEEeCCCCceecceeEEEEe-CCE
Q 017317          289 LEFVHTSKATKHLLAAFPKLIKLV--APLHKKAAVVNVAANGIVI-----------RKFEDPNGKVMSFVTSALEF-DDH  354 (373)
Q Consensus       289 ~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~g~v~~~~~~g~~~-----------~~~~~~~g~~~~~~~~~~~~-~g~  354 (373)
                      .+.  ..|..   ...+|...+..  ......|.|++++++|++-           +.|.  .|  ++.+..+.++ +|+
T Consensus       172 ~n~--~~~~~---aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA--~G--~RNp~Gla~dp~G~  242 (454)
T TIGR03606       172 ANF--FLPNQ---AQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT--YG--HRNPQGLAFTPDGT  242 (454)
T ss_pred             ccc--cCcch---hccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE--Ee--ccccceeEECCCCC
Confidence            000  00000   00011100000  1134568899999998731           2221  12  1234445444 578


Q ss_pred             EEEeeCCC
Q 017317          355 LYLGSLNT  362 (373)
Q Consensus       355 L~vgs~~~  362 (373)
                      ||++..+.
T Consensus       243 Lw~~e~Gp  250 (454)
T TIGR03606       243 LYASEQGP  250 (454)
T ss_pred             EEEEecCC
Confidence            99887655

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=8.5e-05  Score=68.32  Aligned_cols=183  Identities=15%  Similarity=0.113  Sum_probs=107.8

Q ss_pred             cceEEEecCCCE-EEEecCCeEEEEEcCCceEEe---eeecCccccCeEECCCCc--EEEEECCCcEEEEe-cCC-cEEE
Q 017317           79 PEDVCVDRNGVL-YTATRDGWIKRLHKNGTWENW---KLIGGDTLLGITTTQENE--ILVCDADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        79 P~~ia~d~~G~l-~v~~~~g~I~~~~~~g~~~~~---~~~~~~p~~gl~~d~~g~--L~va~~~~gl~~~~-~~g-~~~l  150 (373)
                      -.+|-+.|.--| .++..++.+..+..+|+....   ......|....+|.++|.  ++.+....-++.|| .++ ++.+
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~  295 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL  295 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence            456777774444 477777766555556643322   122344543667788887  33333333467788 666 5554


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~  230 (373)
                      .. ..|........+.+.+++++.+..+                 .+|.|+.+...+++...-..--....+++|+.|++
T Consensus       296 ~~-~~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  296 KP-PYGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK  357 (514)
T ss_pred             cC-CCCcccchhheeEecCCCCeEEEcc-----------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence            32 3334445667788999998555443                 25788888877665432222223456789999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      .||++.. .+.|+.+++....  -...|.+...-.-..+|...+|. |+|+..
T Consensus       358 ~l~~~~~-~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~-ylA~GS  406 (514)
T KOG2055|consen  358 ELLASGG-TGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGS-YLATGS  406 (514)
T ss_pred             EEEEEcC-CceEEEEecCCcc--eEEEEeecCccceeeeeecCCCc-eEEecc
Confidence            7777754 4589999987653  23344432111223467777887 666543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.38  E-value=0.00012  Score=64.40  Aligned_cols=196  Identities=13%  Similarity=0.154  Sum_probs=105.3

Q ss_pred             ccccCeEECCC-CcEEEEEC-CCcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317          117 DTLLGITTTQE-NEILVCDA-DKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (373)
Q Consensus       117 ~p~~gl~~d~~-g~L~va~~-~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~  192 (373)
                      .+. ||+++++ +.||+... ...|+.++.+|  ++.+.  ..+  +.-+.+|+.-.+|.+.+++..             
T Consensus        23 e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~Er-------------   84 (248)
T PF06977_consen   23 ELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEER-------------   84 (248)
T ss_dssp             -EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEETT-------------
T ss_pred             Ccc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEcC-------------
Confidence            456 9999986 56886643 34578888666  33332  222  445778998888888877632             


Q ss_pred             cccCCceEEEEeC--CCCeE-----EEeec-----CCCCcceEEEccCCCEEEEEeCCC-CeEEEEEe--cCCCCcceeE
Q 017317          193 EAKPHGKLLKYDP--SLNET-----SILLD-----SLFFANGVALSKDEDYLVVCETFK-FRCLKYWL--KGESKEQTEI  257 (373)
Q Consensus       193 ~~~~~g~l~~~d~--~~~~~-----~~~~~-----~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~--~~~~~~~~~~  257 (373)
                          .+.|+.++.  .+...     +.+.-     +...-.|+++++.++.|+++.... .+|+.++.  .+........
T Consensus        85 ----~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   85 ----DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             ----TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             ----CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence                356665543  32221     11211     122347999999988888886443 24555553  1111100000


Q ss_pred             --Ee-cC-CCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEE
Q 017317          258 --FV-EN-LPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIR  332 (373)
Q Consensus       258 --~~-~~-~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~  332 (373)
                        +. .. .-.-+.++.+++ .|++|+-+..++                                  .++.+|.+|+++.
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------------------------------~l~~~d~~G~~~~  206 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------------------------------LLLELDRQGRVVS  206 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETTTT----------------------------------EEEEE-TT--EEE
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECCCC----------------------------------eEEEECCCCCEEE
Confidence              00 00 112377888887 567888876653                                  6899999999988


Q ss_pred             EEeCCCC-----ceecceeEEEEe-CCEEEEeeCCCCeEEEee
Q 017317          333 KFEDPNG-----KVMSFVTSALEF-DDHLYLGSLNTNFIGKLP  369 (373)
Q Consensus       333 ~~~~~~g-----~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~  369 (373)
                      .+.-..|     ..+..+.+++.+ +|+||+.+= .|..++++
T Consensus       207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f~  248 (248)
T PF06977_consen  207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRFE  248 (248)
T ss_dssp             EEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEEE
T ss_pred             EEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEeC
Confidence            8866554     234567888876 589999994 66666653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=0.00074  Score=65.13  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=90.0

Q ss_pred             eEEEEEcCCc-eEEeeeecCccccCeEECCCCc-E-EEEEC--CCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-I-LVCDA--DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L-~va~~--~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .|+..+.+|. .+.+........ ...+.+||+ | |+...  ...|+.++ .+| .+.+.. ..+    .....++.||
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence            5566665443 222322223344 778889996 3 33322  23588888 666 555432 121    2345688999


Q ss_pred             Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL  247 (373)
Q Consensus       171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  247 (373)
                      |+ |+++...               .....||.+|.++++.+.+...........|+|||+.++++...  ...|+++++
T Consensus       257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            95 6555321               12357999999888776654433334567899999988876532  347888887


Q ss_pred             cCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317          248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw  278 (373)
                      ++....   .+.. ..+........+||+..
T Consensus       322 ~g~~~~---~lt~-~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        322 DGSNPR---RISF-GGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             CCCCeE---Eeec-CCCcccCeEECCCCCEE
Confidence            654322   2221 12223346677888643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.32  E-value=0.00017  Score=68.67  Aligned_cols=221  Identities=13%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR  158 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~  158 (373)
                      ++++ ++++|+++.+|.++.+| .+|+..-.....+.......+. ++.+|++...+.++.+| .+| ...-.. .....
T Consensus       116 ~~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~  192 (394)
T PRK11138        116 VTVA-GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVN-LDVPS  192 (394)
T ss_pred             cEEE-CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeec-CCCCc
Confidence            3444 68999999999999999 5776432222222222123332 67899887666689999 678 332221 11110


Q ss_pred             c--cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcce---------EEEcc
Q 017317          159 I--NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG---------VALSK  227 (373)
Q Consensus       159 ~--~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~g---------i~~~~  227 (373)
                      .  .....-++. +|.+|++..                  .|.++.+|.++++...... ...+.+         +.-+|
T Consensus       193 ~~~~~~~sP~v~-~~~v~~~~~------------------~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP  252 (394)
T PRK11138        193 LTLRGESAPATA-FGGAIVGGD------------------NGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTP  252 (394)
T ss_pred             ccccCCCCCEEE-CCEEEEEcC------------------CCEEEEEEccCChhhheec-cccCCCccchhcccccCCCc
Confidence            0  001111222 467887754                  3788888888776432111 111110         00111


Q ss_pred             --CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhc
Q 017317          228 --DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAF  305 (373)
Q Consensus       228 --dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~  305 (373)
                        .++.+|++.. ++.++.++....+.    .+.... +.+..+.. .+|++|+++..+                     
T Consensus       253 ~v~~~~vy~~~~-~g~l~ald~~tG~~----~W~~~~-~~~~~~~~-~~~~vy~~~~~g---------------------  304 (394)
T PRK11138        253 VVVGGVVYALAY-NGNLVALDLRSGQI----VWKREY-GSVNDFAV-DGGRIYLVDQND---------------------  304 (394)
T ss_pred             EEECCEEEEEEc-CCeEEEEECCCCCE----EEeecC-CCccCcEE-ECCEEEEEcCCC---------------------
Confidence              2345888764 56899998754322    222111 12223343 467889887654                     


Q ss_pred             chhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          306 PKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       306 ~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                    .++.+|. +|+.+-......+.   ..+.....+++||+++..+ +|..++..
T Consensus       305 --------------~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G-~l~~ld~~  353 (394)
T PRK11138        305 --------------RVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG-YLHWINRE  353 (394)
T ss_pred             --------------eEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC-EEEEEECC
Confidence                          3677774 56654433222221   1233333567888887654 46666654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.32  E-value=0.00033  Score=66.17  Aligned_cols=219  Identities=15%  Similarity=0.169  Sum_probs=116.1

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR  158 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~  158 (373)
                      .+++ ++.+|+++.+|.++.+| .+|+..-.....+.......+ .++.+|++.....++.+| ++| ...-.. .....
T Consensus       101 p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~  177 (377)
T TIGR03300       101 VGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPA  177 (377)
T ss_pred             eEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCc
Confidence            3454 78899999999999999 477653322222222212333 356888887666789999 677 332211 11110


Q ss_pred             c--cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-------------ceE
Q 017317          159 I--NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-------------NGV  223 (373)
Q Consensus       159 ~--~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-------------~gi  223 (373)
                      .  .......+. +|.+|++..                  .+.++.+|+.+++...... ...+             ...
T Consensus       178 ~~~~~~~sp~~~-~~~v~~~~~------------------~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p  237 (377)
T TIGR03300       178 LTLRGSASPVIA-DGGVLVGFA------------------GGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDP  237 (377)
T ss_pred             eeecCCCCCEEE-CCEEEEECC------------------CCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCcc
Confidence            0  001111222 467777653                  3789999988776432111 1111             011


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHH
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLA  303 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~  303 (373)
                      .+  .++.+|++.. .+.++.++....+.    .+..... ......+ .+|++|+++..+                   
T Consensus       238 ~~--~~~~vy~~~~-~g~l~a~d~~tG~~----~W~~~~~-~~~~p~~-~~~~vyv~~~~G-------------------  289 (377)
T TIGR03300       238 VV--DGGQVYAVSY-QGRVAALDLRSGRV----LWKRDAS-SYQGPAV-DDNRLYVTDADG-------------------  289 (377)
T ss_pred             EE--ECCEEEEEEc-CCEEEEEECCCCcE----EEeeccC-CccCceE-eCCEEEEECCCC-------------------
Confidence            12  2446887764 56799998753321    2221111 1223333 357889887544                   


Q ss_pred             hcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          304 AFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       304 ~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                      .++.+|. +|+.+..+....+.   ..+.....+++||+++..+ .|..++..
T Consensus       290 ----------------~l~~~d~~tG~~~W~~~~~~~~---~~ssp~i~g~~l~~~~~~G-~l~~~d~~  338 (377)
T TIGR03300       290 ----------------VVVALDRRSGSELWKNDELKYR---QLTAPAVVGGYLVVGDFEG-YLHWLSRE  338 (377)
T ss_pred             ----------------eEEEEECCCCcEEEccccccCC---ccccCEEECCEEEEEeCCC-EEEEEECC
Confidence                            4777875 57766554322221   1222233467888887654 46666553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00052  Score=66.15  Aligned_cols=200  Identities=16%  Similarity=0.179  Sum_probs=114.9

Q ss_pred             EEEecCCC-EEEEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEEE
Q 017317           82 VCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVL  150 (373)
Q Consensus        82 ia~d~~G~-l~v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~l  150 (373)
                      .++.++|+ |+..+ .  ...|++++ ..|+.+.+....+... ...+.+||+ |+++ +..  ..|+.++ .+| .+.+
T Consensus       209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l  287 (433)
T PRK04922        209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL  287 (433)
T ss_pred             ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC
Confidence            45667775 44333 2  34688888 4455555443334444 678999996 5443 322  2488888 666 5554


Q ss_pred             eeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg  229 (373)
                      ... .    .......+++||+ |+++...               .....||.+|.++++.+.+..........+++|||
T Consensus       288 t~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG  347 (433)
T PRK04922        288 TNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG  347 (433)
T ss_pred             ccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCC
Confidence            321 1    1123568899995 5555321               11236999998777765543222334468999999


Q ss_pred             CEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHHHhcc
Q 017317          230 DYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLLAAFP  306 (373)
Q Consensus       230 ~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~~~~~  306 (373)
                      +.++++....  ..|+.+++.+..   ...+...  .......+++||+. +++.....                     
T Consensus       348 ~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~g---------------------  401 (433)
T PRK04922        348 KKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATREGG---------------------  401 (433)
T ss_pred             CEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEecCC---------------------
Confidence            9988875432  368888875432   2222211  12334578899973 43333211                     


Q ss_pred             hhhhhccCCCccEEEEEECCCCcEEEEEeCCCC
Q 017317          307 KLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG  339 (373)
Q Consensus       307 ~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g  339 (373)
                                 ...++.++.+|+....+..+.|
T Consensus       402 -----------~~~L~~~~~~g~~~~~l~~~~g  423 (433)
T PRK04922        402 -----------RGVLAAVSTDGRVRQRLVSADG  423 (433)
T ss_pred             -----------ceEEEEEECCCCceEEcccCCC
Confidence                       1347778888877766654433

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.31  E-value=8.7e-06  Score=68.66  Aligned_cols=111  Identities=18%  Similarity=0.182  Sum_probs=77.6

Q ss_pred             EEecCCCEEEEec----------CCeEEEEEcCCceEEeeeecCccccCeEECCCC-cEEEEECC-CcE--EEEe-cCC-
Q 017317           83 CVDRNGVLYTATR----------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDAD-KGL--LKVT-EEG-  146 (373)
Q Consensus        83 a~d~~G~l~v~~~----------~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~-~gl--~~~~-~~g-  146 (373)
                      -+||+|+.|.|+.          .|.++++-..++++.+....+-++ ||++|.+. .+|+.|.- ..+  +.+| ++| 
T Consensus       115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~  193 (310)
T KOG4499|consen  115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD  193 (310)
T ss_pred             ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence            4677899998862          355566667778887777777888 99999776 46776653 456  4455 566 


Q ss_pred             c---EEEeeccC--CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          147 V---TVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       147 ~---~~l~~~~~--~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                      +   +.+.....  ......|.++++|.+|+|||++.+                 .++|+++||.+|+.-
T Consensus       194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKIL  246 (310)
T ss_pred             ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEE
Confidence            3   23333211  122346889999999999999875                 479999999998753

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.31  E-value=7.1e-06  Score=59.14  Aligned_cols=81  Identities=25%  Similarity=0.410  Sum_probs=58.0

Q ss_pred             eeEEcCCCcEEEEeCCcccccccccc--ccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe
Q 017317          164 DLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (373)
Q Consensus       164 ~l~~~~dG~l~v~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  241 (373)
                      +|+.-...++|++...  +....+..  +..-+-+.+.|+.||++  +.+.+++++..||||+++++++.|||++..++.
T Consensus         2 DIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen    2 DIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence            4444334578888542  22222221  22223456789999974  677889999999999999999999999999999


Q ss_pred             EEEEEec
Q 017317          242 CLKYWLK  248 (373)
Q Consensus       242 i~~~~~~  248 (373)
                      |+.|..+
T Consensus        78 I~vy~~~   84 (86)
T PF01731_consen   78 IHVYKRH   84 (86)
T ss_pred             EEEEEec
Confidence            9999753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.29  E-value=0.0012  Score=57.77  Aligned_cols=174  Identities=17%  Similarity=0.191  Sum_probs=97.7

Q ss_pred             EEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEE-eecc-CCc
Q 017317           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL-ASHV-NGS  157 (373)
Q Consensus        83 a~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l-~~~~-~~~  157 (373)
                      ++..+|.+|+++.++.|+.++ .+|+..--....+... ....-.++.+|++...+.++.+| .+| ...- .... +..
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            554589999999999999999 5886543223233333 33233577899988666799999 788 4332 1111 111


Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc------------ceEEE
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA------------NGVAL  225 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~------------~gi~~  225 (373)
                      ........+++ ++.+|++..                  .+.|+.+|+++|+...-... ..+            .+-.+
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  111 GVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV  170 (238)
T ss_dssp             STB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred             ccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence            22222333444 457888764                  37899999998876433222 111            12223


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ..++ .+|++.... ++..++....+    ..+... ...+..+....++.+|+++..+
T Consensus       171 ~~~~-~v~~~~~~g-~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  171 ISDG-RVYVSSGDG-RVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSSDG  222 (238)
T ss_dssp             CCTT-EEEEECCTS-SEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEETTT
T ss_pred             EECC-EEEEEcCCC-eEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeCCC
Confidence            3344 688886544 46666755432    123222 2223333445667888888433

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.00092  Score=64.37  Aligned_cols=173  Identities=14%  Similarity=0.178  Sum_probs=99.9

Q ss_pred             ceEEEecCCC-E-EEEecC--CeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cE
Q 017317           80 EDVCVDRNGV-L-YTATRD--GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VT  148 (373)
Q Consensus        80 ~~ia~d~~G~-l-~v~~~~--g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~  148 (373)
                      .+..+.++|+ | |+...+  ..|++++ .+|+.+.+....+... ...+.+||+ |++. +..  ..|+.++ .++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            3456777775 3 344332  4688888 4455555443334445 678999996 4433 222  2488888 566 55


Q ss_pred             EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~  227 (373)
                      .+... .+    ......+.+||+ |+++...               .....||++|.++++.+.+...........++|
T Consensus       281 ~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            54321 11    123457889985 6665321               123479999988777665543222334568999


Q ss_pred             CCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317          228 DEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       228 dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw  278 (373)
                      ||+.++++....  ..|+.+++.+..   ...+...  .......+++||+..
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i  388 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTML  388 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEE
Confidence            999998886533  357788876532   2222211  122345678898743

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.26  E-value=1.5e-05  Score=73.67  Aligned_cols=161  Identities=16%  Similarity=0.259  Sum_probs=95.1

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-EEee-------cCCCCcceEEEccC---
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILL-------DSLFFANGVALSKD---  228 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~-------~~~~~~~gi~~~~d---  228 (373)
                      +.|.+|++.|||++||++.                  .|+|++++.+ +.. ..+.       .+.....|++++|+   
T Consensus         2 ~~P~~~a~~pdG~l~v~e~------------------~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~   62 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER------------------SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS   62 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET------------------TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred             CCceEEEEeCCCcEEEEeC------------------CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence            4578999999999999974                  4899999954 433 2221       12334568999995   


Q ss_pred             CCEEEEEeCCC--------CeEEEEEecCC--CCcceeEEecCCCC------CCCceeECCCCCEEEEEecCCCchhhhc
Q 017317          229 EDYLVVCETFK--------FRCLKYWLKGE--SKEQTEIFVENLPG------GPDNIKLAPDGSFWIAILQLSSPGLEFV  292 (373)
Q Consensus       229 g~~l~v~~~~~--------~~i~~~~~~~~--~~~~~~~~~~~~~g------~p~~i~~d~dG~lwva~~~~~~~~~~~~  292 (373)
                      ..++|++.+..        .+|.|+..+..  .....+.+....+.      .-..|++++||.||+++......  + .
T Consensus        63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~--~-~  139 (331)
T PF07995_consen   63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND--D-N  139 (331)
T ss_dssp             C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG--G-G
T ss_pred             CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc--c-c
Confidence            35699987743        57888887654  22333333322111      12348899999999998765320  0 0


Q ss_pred             cCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEE-------------EEeCCCCceecceeEEEEe-C-CEEEE
Q 017317          293 HTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIR-------------KFEDPNGKVMSFVTSALEF-D-DHLYL  357 (373)
Q Consensus       293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~-------------~~~~~~g~~~~~~~~~~~~-~-g~L~v  357 (373)
                      +.                  ......|.|++++++|+...             .|.  .|  +..+..+.++ . |+||+
T Consensus       140 ~~------------------~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A--~G--lRN~~~~~~d~~tg~l~~  197 (331)
T PF07995_consen  140 AQ------------------DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYA--YG--LRNPFGLAFDPNTGRLWA  197 (331)
T ss_dssp             GC------------------STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEE--E----SEEEEEEEETTTTEEEE
T ss_pred             cc------------------ccccccceEEEecccCcCCCCCccccCCCceEEEEE--eC--CCccccEEEECCCCcEEE
Confidence            00                  01344677899999987321             111  12  2345566666 4 89999


Q ss_pred             eeCCCCe
Q 017317          358 GSLNTNF  364 (373)
Q Consensus       358 gs~~~~~  364 (373)
                      +..+.+.
T Consensus       198 ~d~G~~~  204 (331)
T PF07995_consen  198 ADNGPDG  204 (331)
T ss_dssp             EEE-SSS
T ss_pred             EccCCCC
Confidence            9876543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.00088  Score=64.63  Aligned_cols=172  Identities=14%  Similarity=0.096  Sum_probs=102.1

Q ss_pred             ceEEEecCCC-E-EEEe--cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cE
Q 017317           80 EDVCVDRNGV-L-YTAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VT  148 (373)
Q Consensus        80 ~~ia~d~~G~-l-~v~~--~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~  148 (373)
                      .+..+.+||+ | |+..  .+..|+.++ ..|+.+.+....+... +.++.+||+ |+++ +..  ..|+.++ .++ .+
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            3456677776 3 3433  245788888 4555555544444455 788999996 4443 322  3488888 566 55


Q ss_pred             EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~  227 (373)
                      .+... .+    ......++|||+ |+++...               .....||++|.++++.+.+...........|+|
T Consensus       284 ~Lt~~-~~----~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp  343 (435)
T PRK05137        284 RLTDS-PA----IDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP  343 (435)
T ss_pred             EccCC-CC----ccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence            54321 11    223568889995 6665321               123479999988777666543322334578999


Q ss_pred             CCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          228 DEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       228 dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                      ||+.++++....  .+|+.++.++..   ...+. . ........+++||+.
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt-~-~~~~~~p~~spDG~~  390 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGSG---ERILT-S-GFLVEGPTWAPNGRV  390 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCc---eEecc-C-CCCCCCCeECCCCCE
Confidence            999888876433  467788765432   12222 1 123456778899974

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.25  E-value=0.0016  Score=60.26  Aligned_cols=178  Identities=16%  Similarity=0.143  Sum_probs=94.4

Q ss_pred             CcceEEEecCCC-EEEEe-c-CCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEE--ecCC-cEEE
Q 017317           78 GPEDVCVDRNGV-LYTAT-R-DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKV--TEEG-VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~-l~v~~-~-~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~--~~~g-~~~l  150 (373)
                      .|+.+++.+||+ ||+.+ . ++.|-++| ..+++......++... .....++.....|- ......+  +.+| ...-
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~-Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCR-DGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEee-cCceEEEEecCCCceEEe
Confidence            355899999885 78877 3 68899998 5555543333344333 33333333333332 2233333  3344 2211


Q ss_pred             e----eccCCccccccceeEEcC-CCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-----e-----
Q 017317          151 A----SHVNGSRINLADDLIAAT-DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-----L-----  214 (373)
Q Consensus       151 ~----~~~~~~~~~~~~~l~~~~-dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-----~-----  214 (373)
                      .    ......-+..|   .+.+ +|+ +|++.                   .|.|+.+|..+......     .     
T Consensus       184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLPAIEAFTEAEK  241 (352)
T ss_pred             eeeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecceeeecccccc
Confidence            1    11011112233   2233 665 55552                   27899998543322211     1     


Q ss_pred             cCCCCcce---EEEccCCCEEEEEe---------CCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEE
Q 017317          215 DSLFFANG---VALSKDEDYLVVCE---------TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       215 ~~~~~~~g---i~~~~dg~~l~v~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~  281 (373)
                      .....|.|   +++++|++++||..         ...+.|..+|....+   ..... .....|.++++++||+ +.+++
T Consensus       242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i-~vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKI-ELGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEE-eCCCceeeEEECCCCCeEEEEe
Confidence            01234555   99999999999953         223689999864432   11112 1234688999999998 55555


Q ss_pred             ec
Q 017317          282 LQ  283 (373)
Q Consensus       282 ~~  283 (373)
                      +.
T Consensus       318 n~  319 (352)
T TIGR02658       318 ST  319 (352)
T ss_pred             CC
Confidence            43

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.0028  Score=55.85  Aligned_cols=234  Identities=13%  Similarity=0.095  Sum_probs=133.8

Q ss_pred             CCcceEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeeec-CccccCeEE-CCCCcEEEEEC--CCcEEEEe-c-CC-c
Q 017317           77 NGPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLIG-GDTLLGITT-TQENEILVCDA--DKGLLKVT-E-EG-V  147 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~~-~~p~~gl~~-d~~g~L~va~~--~~gl~~~~-~-~g-~  147 (373)
                      ..+.+|.++++|...+. +.+..+..++ .+|+........ -.+. -+.+ +.+..+.-+..  ...|..++ . +. +
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            45788999999988865 5667888888 566543322211 1122 2223 33444444332  12344444 2 23 4


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~  227 (373)
                      +.+    .|.. ..++.|.+.|-+..+++.+-                 ...|..+|....+.+.+.. +..+.-.|++|
T Consensus        94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S~-----------------D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp  150 (311)
T KOG1446|consen   94 RYF----PGHK-KRVNSLSVSPKDDTFLSSSL-----------------DKTVRLWDLRVKKCQGLLN-LSGRPIAAFDP  150 (311)
T ss_pred             EEc----CCCC-ceEEEEEecCCCCeEEeccc-----------------CCeEEeeEecCCCCceEEe-cCCCcceeECC
Confidence            433    2222 35789999998888888653                 3456666665455444332 34456789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHh
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAA  304 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~  304 (373)
                      +|- ++.+......|..||+.--..+.+..+.-.  ....-.++.+.+||. |.+++..+                    
T Consensus       151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s--------------------  209 (311)
T KOG1446|consen  151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS--------------------  209 (311)
T ss_pred             CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC--------------------
Confidence            996 555555566899999764334445555322  112345688999996 67777665                    


Q ss_pred             cchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          305 FPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       305 ~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                     .++.+| -+|.+...++...+. .+....+.+. +++..+++...-+|...++.
T Consensus       210 ---------------~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  210 ---------------FIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             ---------------cEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence                           245555 578877777553322 1122333333 45555555555566666654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.24  E-value=0.00056  Score=63.81  Aligned_cols=178  Identities=13%  Similarity=0.121  Sum_probs=99.9

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEEcCCce-EE-eeeecCccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeeccCCc
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTW-EN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGS  157 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g~~-~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~~~~~  157 (373)
                      .++++.++|.+..|+++|.|..+++.+.. .. .....+... +|+.-++|.|.-+..+..|..+|. ..+.+....-..
T Consensus       250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe  327 (626)
T KOG2106|consen  250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPE  327 (626)
T ss_pred             EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEeccc-cccccccccCch
Confidence            45788899999999999999999975532 11 113345566 788888999887655555776762 122222111112


Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      .+..+..++... +.|||+++.                  ..|+.=+.+++-..........-=|++..|+.+ +|++..
T Consensus       328 ~~G~iRtv~e~~-~di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~g  387 (626)
T KOG2106|consen  328 QFGPIRTVAEGK-GDILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCG  387 (626)
T ss_pred             hcCCeeEEecCC-CcEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heeecc
Confidence            233556666543 349999865                  234433333222222222223345788999887 666654


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS  285 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~  285 (373)
                       ..+..++|- +.+......+.+  +  .....+++.|.+-+++..++
T Consensus       388 -qdk~v~lW~-~~k~~wt~~~~d--~--~~~~~fhpsg~va~Gt~~G~  429 (626)
T KOG2106|consen  388 -QDKHVRLWN-DHKLEWTKIIED--P--AECADFHPSGVVAVGTATGR  429 (626)
T ss_pred             -CcceEEEcc-CCceeEEEEecC--c--eeEeeccCcceEEEeeccce
Confidence             445555553 222222222221  1  23456677887777776663

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.24  E-value=5.9e-05  Score=74.01  Aligned_cols=179  Identities=16%  Similarity=0.108  Sum_probs=115.4

Q ss_pred             cceEEEec-CCCEE-EEecCCeEEEEEcCC-ceEEe-eeecCccccCeEECCCC-cEEEEECCC---cEEEEecCC--cE
Q 017317           79 PEDVCVDR-NGVLY-TATRDGWIKRLHKNG-TWENW-KLIGGDTLLGITTTQEN-EILVCDADK---GLLKVTEEG--VT  148 (373)
Q Consensus        79 P~~ia~d~-~G~l~-v~~~~g~I~~~~~~g-~~~~~-~~~~~~p~~gl~~d~~g-~L~va~~~~---gl~~~~~~g--~~  148 (373)
                      |-+|.+|. +..+| .....-.|.+-..+| +.+.+ ......|- ||++|--+ ++|.+|...   ++-.+  +|  .+
T Consensus      1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~L--dG~~rk 1103 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALL--DGSERK 1103 (1289)
T ss_pred             eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeec--CCceee
Confidence            45566665 34444 444444455554444 33333 34567899 99999666 688887642   23333  35  34


Q ss_pred             EEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEc
Q 017317          149 VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALS  226 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~  226 (373)
                      .|...    .+-.|.+|++|+ .|+||.+|+.               +.+-.|-+.+.+++..++ +.+.+..|||+.|+
T Consensus      1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred             EEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeC
Confidence            44432    233578999997 5799999985               234456666666544444 45678899999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      |-.+.|-|++.+++|+.....++.  ++..+ . +.-.+|-++.-+.+. +|.+.|..
T Consensus      1165 pfs~~LCWvDAGt~rleC~~p~g~--gRR~i-~-~~LqYPF~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGT--GRRVI-Q-NNLQYPFSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred             cccceeeEEecCCcceeEecCCCC--cchhh-h-hcccCceeeeecccc-ceeecccc
Confidence            999999999999999998876653  22222 2 223478888776664 88888864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.0012  Score=63.41  Aligned_cols=174  Identities=9%  Similarity=0.057  Sum_probs=101.1

Q ss_pred             eEEEecCCCEE--EEe--cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEE
Q 017317           81 DVCVDRNGVLY--TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (373)
Q Consensus        81 ~ia~d~~G~l~--v~~--~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~  149 (373)
                      +.++.|||+..  +..  .+..|+.++ ..|+.+.+....+... ...+.+||+ |+++ +..  ..|+.++ +++ .+.
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            45777777643  322  234677777 4455554443334445 788999996 5444 222  2488888 666 555


Q ss_pred             EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      +....     .......+.|||+ |+++...               ...-.||++|.++++.+.+...........++||
T Consensus       282 lt~~~-----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        282 VTDGR-----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  341 (429)
T ss_pred             ccCCC-----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            53221     1234678899996 5554321               0123799999888776665433333456889999


Q ss_pred             CCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317          229 EDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       229 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva  280 (373)
                      |+.++++...+  ..|+.+++++..   ...+...  ..-....+.+||+..+.
T Consensus       342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIY  390 (429)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEE
Confidence            99888765433  457777765532   2222211  11234667899974433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.0014  Score=62.97  Aligned_cols=201  Identities=14%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             eEEEecCCC-EEEEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEE
Q 017317           81 DVCVDRNGV-LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTV  149 (373)
Q Consensus        81 ~ia~d~~G~-l~v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~  149 (373)
                      +.++.|+|+ |++.+ .  ...|+.++ ..|+.+.+....+... ..++.+||+ |+++ +..  ..|+.++ ..+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            346777775 33333 2  24588888 4555555543344455 788999996 5443 222  2477777 445 554


Q ss_pred             EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      +... .+    ......+++||+ |+++...               ...-.||.++.++++.+.+..........+|+||
T Consensus       279 lt~~-~~----~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        279 LTQS-SG----IDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCCC-CC----CCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence            4321 11    123467899995 6654321               1224689998776665544322222345789999


Q ss_pred             CCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHHHhc
Q 017317          229 EDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLLAAF  305 (373)
Q Consensus       229 g~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~~~~  305 (373)
                      |++++++....  ..|+.+++.+...   ..+...  .........+||+. +.+...+.                    
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~~---~~lt~~--~~~~~p~~spdg~~l~~~~~~~g--------------------  393 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQV---TALTDT--TRDESPSFAPNGRYILYATQQGG--------------------  393 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCCe---EEccCC--CCccCceECCCCCEEEEEEecCC--------------------
Confidence            99888765433  3688888765332   222211  22345678899974 44443221                    


Q ss_pred             chhhhhccCCCccEEEEEECCCCcEEEEEeCCCC
Q 017317          306 PKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG  339 (373)
Q Consensus       306 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g  339 (373)
                                  ...+..++.+|+....+..+.|
T Consensus       394 ------------~~~l~~~~~~g~~~~~l~~~~g  415 (427)
T PRK02889        394 ------------RSVLAAVSSDGRIKQRLSVQGG  415 (427)
T ss_pred             ------------CEEEEEEECCCCceEEeecCCC
Confidence                        1246677778887776655544

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.19  E-value=0.00071  Score=57.78  Aligned_cols=181  Identities=14%  Similarity=0.130  Sum_probs=105.7

Q ss_pred             CCcceEEEecCCC-EEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCC--cEEE
Q 017317           77 NGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g--~~~l  150 (373)
                      ..-..+.+..+|+ +|.|+++|.+..+| ..-........ ..|...+.+.++. +|++++..+.|..+| ...  ...+
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l  162 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL  162 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence            4445667777776 56888999888887 22111111111 2343377787654 799998777788888 433  3333


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE---eecCCCCcce----E
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANG----V  223 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~~g----i  223 (373)
                      ...    ....+..+++++||...++..+                 .|..|.++.-+++...   ....+..-++    .
T Consensus       163 iPe----~~~~i~sl~v~~dgsml~a~nn-----------------kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  163 IPE----DDTSIQSLTVMPDGSMLAAANN-----------------KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             CCC----CCcceeeEEEcCCCcEEEEecC-----------------CccEEEEEccCCCccccceEhhheecccceEEEE
Confidence            322    2246788999999998877532                 4777777654433221   1222333333    4


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      .+|||++ .+++.+.+..+..+..++.  -..+...+.-.+-..+.+++.||.+.|+..
T Consensus       222 ~lSPd~k-~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTas  277 (311)
T KOG0315|consen  222 LLSPDVK-YLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTAS  277 (311)
T ss_pred             EECCCCc-EEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecC
Confidence            5899998 4455555667777765553  222222222222345577889998777654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.0031  Score=61.04  Aligned_cols=134  Identities=10%  Similarity=0.056  Sum_probs=79.5

Q ss_pred             CeEECCCCc-EE-EEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccc
Q 017317          121 GITTTQENE-IL-VCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       121 gl~~d~~g~-L~-va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~  193 (373)
                      ...+++||+ |+ +....  ..|+.++ .+| .+.+.. ..+    .....+++|||+ |+++...              
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~--------------  282 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK--------------  282 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence            678899996 43 33322  2478888 566 544432 122    123568899995 7665321              


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (373)
Q Consensus       194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  271 (373)
                       .....||.+|.++++.+.+..........+|++||+.++++...  ...|+++++++.+.   ...... .......++
T Consensus       283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~-g~~~~~~~~  357 (448)
T PRK04792        283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFE-GEQNLGGSI  357 (448)
T ss_pred             -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecC-CCCCcCeeE
Confidence             12346999999888777654433344567899999988876543  35688888765432   222111 112233567


Q ss_pred             CCCCCEE
Q 017317          272 APDGSFW  278 (373)
Q Consensus       272 d~dG~lw  278 (373)
                      ++||+..
T Consensus       358 SpDG~~l  364 (448)
T PRK04792        358 TPDGRSM  364 (448)
T ss_pred             CCCCCEE
Confidence            8888643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.18  E-value=0.0029  Score=60.92  Aligned_cols=157  Identities=14%  Similarity=0.084  Sum_probs=89.5

Q ss_pred             eEEEEEcCCc-eEEeeeecCccccCeEECCCCcE--EEEEC--CCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENEI--LVCDA--DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L--~va~~--~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .|+..|.+|. .+.+........ ..++++||+.  |+...  ...++.++ .+| .+.+... .+    ...++.+.||
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCC
Confidence            4555554443 222322222344 7889999963  33321  13477777 566 5554321 11    2235789999


Q ss_pred             Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL  247 (373)
Q Consensus       171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  247 (373)
                      |+ |+++...               .....||.+|.++++.+.+...........|+|||+.++++...  ...|+++++
T Consensus       254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            95 6665321               12236999999888777665443445678999999988665432  346888877


Q ss_pred             cCCCCcceeEEecCCCCCCCceeECCCCCEEE
Q 017317          248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (373)
Q Consensus       248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwv  279 (373)
                      ++...   ..+. ...+......+.+||+..+
T Consensus       319 ~~g~~---~~lt-~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        319 NGGAP---QRIT-WEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCCe---EEee-cCCCCccCEEECCCCCEEE
Confidence            65432   2222 1122334567788886443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=0.0023  Score=61.15  Aligned_cols=198  Identities=13%  Similarity=0.069  Sum_probs=117.3

Q ss_pred             EEecCCC--EEEEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC---CCcEEEEe-cCC-cEEE
Q 017317           83 CVDRNGV--LYTAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA---DKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        83 a~d~~G~--l~v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~---~~gl~~~~-~~g-~~~l  150 (373)
                      .+.++|+  +|+.+ .  ...|+.++ ..|+.+.+....+... ...+.+||+ |.+...   ...|+.++ .++ .+.+
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L  272 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI  272 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc
Confidence            5566775  55433 2  35688888 4566666554344444 566888985 544322   23588888 566 5555


Q ss_pred             eeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg  229 (373)
                      ... .+    .-....+.||| .|+|+...               .....||++|.++++.+.+..... .+ ..++|||
T Consensus       273 T~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG  330 (419)
T PRK04043        273 TNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYK  330 (419)
T ss_pred             ccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCC
Confidence            432 11    01123688999 58887532               123479999999888765543211 12 4899999


Q ss_pred             CEEEEEeCCC--------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHH
Q 017317          230 DYLVVCETFK--------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKH  300 (373)
Q Consensus       230 ~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~  300 (373)
                      +.+.++....        ..|+.+++++..   .+.+...  +.-....+.+||+ |++++..+.               
T Consensus       331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~---------------  390 (419)
T PRK04043        331 NYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN---------------  390 (419)
T ss_pred             CEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEccCC---------------
Confidence            9888776543        478888876543   2222211  2222366789996 555544321               


Q ss_pred             HHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCc
Q 017317          301 LLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGK  340 (373)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  340 (373)
                                       ...+..++.+|+....+....|.
T Consensus       391 -----------------~~~L~~~~l~g~~~~~l~~~~g~  413 (419)
T PRK04043        391 -----------------QSALGIIRLNYNKSFLFPLKVGK  413 (419)
T ss_pred             -----------------cEEEEEEecCCCeeEEeecCCCc
Confidence                             23477888899877777654553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.13  E-value=0.00091  Score=58.60  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecCCCCcceEEEccCCCEEEEEeC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      .+..++.+..+|.||-+++.  |             +...|.++|++++++..  -.+.-.+..|+++..|  .+|.-..
T Consensus        45 aFTQGL~~~~~g~LyESTG~--y-------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW  107 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGL--Y-------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW  107 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECS--T-------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred             ccCccEEecCCCEEEEeCCC--C-------------CcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence            46678899889999999875  2             23579999999988653  3455667899998855  5999998


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCc
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK  317 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  317 (373)
                      .++..++||.+.  ......+.  .++--.|++.|. .+||++....                                 
T Consensus       108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS~---------------------------------  149 (264)
T PF05096_consen  108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGSS---------------------------------  149 (264)
T ss_dssp             SSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SSS---------------------------------
T ss_pred             cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCcc---------------------------------
Confidence            889999999653  33334443  234557888653 3788887654                                 


Q ss_pred             cEEEEEECCC-CcEEEEEeC-CCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          318 KAAVVNVAAN-GIVIRKFED-PNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       318 ~g~v~~~~~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                        .+..+||+ -+....+.. .+|.....+-.+...+|.||.--+..|.|.++++.+
T Consensus       150 --~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  150 --RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             --EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             --ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence              36778864 345444433 245666677788888999999999999999999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.12  E-value=0.0027  Score=55.51  Aligned_cols=210  Identities=19%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             CCeEEEEEc-CCceEEeeee---cCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcC
Q 017317           96 DGWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT  169 (373)
Q Consensus        96 ~g~I~~~~~-~g~~~~~~~~---~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~  169 (373)
                      +|.|..+|. +|+..--...   ...+. ...+..++.+|+++....|+.+| .+| ...-.. ..+ +...+   ..-.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~-~~~~~---~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPG-PISGA---PVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE-CSS-CGGSG---EEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee-ccc-cccce---eeec
Confidence            466777774 5543211111   11112 11343578999998778899999 688 433222 121 11111   2334


Q ss_pred             CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-c-C---CCCcceEEEccCCCEEEEEeCCCCeEEE
Q 017317          170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-D-S---LFFANGVALSKDEDYLVVCETFKFRCLK  244 (373)
Q Consensus       170 dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~-~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~  244 (373)
                      ++.+|+....                  +.|+.+|..+|+..... . .   ...........+++.+++... ...|+.
T Consensus        76 ~~~v~v~~~~------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~  136 (238)
T PF13360_consen   76 GGRVYVGTSD------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVA  136 (238)
T ss_dssp             TTEEEEEETT------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEE
T ss_pred             ccccccccce------------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEE
Confidence            6788888643                  58999998878765431 1 1   111122233334666777764 568999


Q ss_pred             EEecCCCCcceeEEecCCCC-C-------CCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCC
Q 017317          245 YWLKGESKEQTEIFVENLPG-G-------PDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLH  316 (373)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~g-~-------p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  316 (373)
                      ++.+..+.-..... ....+ .       ..+-.+-.+|.++++...++                               
T Consensus       137 ~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-------------------------------  184 (238)
T PF13360_consen  137 LDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-------------------------------  184 (238)
T ss_dssp             EETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTTEEEEECCTSS-------------------------------
T ss_pred             EecCCCcEEEEeec-CCCCCCcceeeecccccceEEECCEEEEEcCCCe-------------------------------
Confidence            98654322111111 11010 0       00111223567888876652                               


Q ss_pred             ccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          317 KKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       317 ~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                          ++.+| ..|+.+.  ..+.+.   ........++.||+++ ....|..+++..
T Consensus       185 ----~~~~d~~tg~~~w--~~~~~~---~~~~~~~~~~~l~~~~-~~~~l~~~d~~t  231 (238)
T PF13360_consen  185 ----VVAVDLATGEKLW--SKPISG---IYSLPSVDGGTLYVTS-SDGRLYALDLKT  231 (238)
T ss_dssp             ----EEEEETTTTEEEE--EECSS----ECECEECCCTEEEEEE-TTTEEEEEETTT
T ss_pred             ----EEEEECCCCCEEE--EecCCC---ccCCceeeCCEEEEEe-CCCEEEEEECCC
Confidence                45556 4565443  222211   1222455678999999 778899999874

...

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.12  E-value=0.0066  Score=57.17  Aligned_cols=188  Identities=16%  Similarity=0.243  Sum_probs=117.4

Q ss_pred             EeccCCcCCcceEEEecCC-CEEEEecCCeEEEEE-cCCceEEee-e-ecCccccCeEECCCCcEEEEECCCcEEEEe-c
Q 017317           70 RLGEGILNGPEDVCVDRNG-VLYTATRDGWIKRLH-KNGTWENWK-L-IGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G-~l~v~~~~g~I~~~~-~~g~~~~~~-~-~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~  144 (373)
                      +...|--..-.++++.++| .||.++.+|.|..++ ..|.-..+. . ...... +|+.+..+.++.+.....|.+++ .
T Consensus       314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLK  392 (603)
T ss_pred             heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecc
Confidence            3334444556677887755 477899999999998 334322221 1 123456 88888878999887766676666 3


Q ss_pred             -CC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc
Q 017317          145 -EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (373)
Q Consensus       145 -~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~  221 (373)
                       +| .....-...    ..|-++++.++|. +.++..                   ..|..+...++-.+  ..-...+.
T Consensus       393 ~~~~t~~~~~~lg----~QP~~lav~~d~~~avv~~~-------------------~~iv~l~~~~~~~~--~~~~y~~s  447 (603)
T KOG0318|consen  393 DNGYTKSEVVKLG----SQPKGLAVLSDGGTAVVACI-------------------SDIVLLQDQTKVSS--IPIGYESS  447 (603)
T ss_pred             cCcccccceeecC----CCceeEEEcCCCCEEEEEec-------------------CcEEEEecCCccee--eccccccc
Confidence             33 111111111    2466899998874 445542                   34555543323222  22346788


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS  285 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~  285 (373)
                      +++++||++.+.|.. .+..++.|-+.|.......... ...+-+..+++.+||.+++++-..|
T Consensus       448 ~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~r  509 (603)
T KOG0318|consen  448 AVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASR  509 (603)
T ss_pred             eEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCC
Confidence            999999999666654 4567999999886543322222 3446678899999999988876654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.11  E-value=0.00085  Score=58.78  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=92.8

Q ss_pred             cceEEEecCCCEEEEe-cCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC---cEEEeec
Q 017317           79 PEDVCVDRNGVLYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLASH  153 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~-~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g---~~~l~~~  153 (373)
                      -|++++- ++.||.=+ .++..+++|++. +...-....+... ||+.| ...||+.|....|+.+|+..   .+.+.-.
T Consensus        92 gEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen   92 GEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             ceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEEE
Confidence            5666666 56788555 567778888542 2211122346678 99976 34799999878899998533   3333333


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----------C-----C
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----------S-----L  217 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----------~-----~  217 (373)
                      ..+.+....|-|..- +|.||.-...                 +..|.++||.+|++....+           .     .
T Consensus       169 ~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~  230 (264)
T PF05096_consen  169 DNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD  230 (264)
T ss_dssp             ETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred             ECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence            466677778888765 7999987654                 3689999999999876421           1     1


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  247 (373)
                      ..-||||++++.+.+||+.-.=..++++.+
T Consensus       231 dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  231 DVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             CeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence            235899999999999999754456666544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.006  Score=58.68  Aligned_cols=155  Identities=10%  Similarity=0.059  Sum_probs=85.3

Q ss_pred             eEEEEEcCCce-EEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .|+..|.+|.. +.+........ ..++.+||+ |+++...   ..|+.++ .+| .+.+.. ..+    .....++.||
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  250 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD  250 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            45555544432 22222223334 778999996 4444322   2388888 666 554432 222    2236789999


Q ss_pred             Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEe
Q 017317          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (373)
Q Consensus       171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~  247 (373)
                      |+ |+++...               .....||.+|.+++..+.+...........|+|||+.++++..  +...|+.++.
T Consensus       251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence            94 6665322               1234799999887766655333223345789999998877643  2345777765


Q ss_pred             cCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          248 KGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                      .+...   +... ..........+++||+.
T Consensus       316 ~~g~~---~~lt-~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        316 SGGAA---QRVT-FTGSYNTSPRISPDGKL  341 (427)
T ss_pred             CCCce---EEEe-cCCCCcCceEECCCCCE
Confidence            54322   1111 11122334667888874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0027  Score=61.16  Aligned_cols=134  Identities=11%  Similarity=0.130  Sum_probs=80.2

Q ss_pred             CeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccc
Q 017317          121 GITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       121 gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~  193 (373)
                      +.++.+||+ |+.+...   ..|+.++ .+| .+.+.. ..+    ......++|||+ |+++.+.              
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~--------------  268 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR--------------  268 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC--------------
Confidence            778889996 4444322   2378888 566 554432 122    123568999995 6665322              


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (373)
Q Consensus       194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  271 (373)
                       .....||.+|.++++.+.+..........+|++||+.++++...  ...|+.+++.+...   +... .........++
T Consensus       269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~~~~~~~  343 (433)
T PRK04922        269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNYNARASV  343 (433)
T ss_pred             -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCCccCEEE
Confidence             12347999999888776654433334567899999988876533  24588887655332   1121 11123345778


Q ss_pred             CCCCCEE
Q 017317          272 APDGSFW  278 (373)
Q Consensus       272 d~dG~lw  278 (373)
                      ++||+..
T Consensus       344 SpDG~~I  350 (433)
T PRK04922        344 SPDGKKI  350 (433)
T ss_pred             CCCCCEE
Confidence            8899643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.0057  Score=58.52  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             eEEEEEcCCceEEeeeecCccccCeEECCCCc--EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      +|+..|.+|.-.......+... ...+.+||+  +|+....   ..|+.++ .+| .+.+.. ..+    ......+.||
T Consensus       170 ~l~~~d~dg~~~~~~~~~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SPD  243 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKGGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSKD  243 (419)
T ss_pred             eEEEECCCCCceeEEccCCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECCC
Confidence            5666666664322221223234 677889985  5554332   3488888 677 666643 222    1123468899


Q ss_pred             C-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317          171 G-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL  247 (373)
Q Consensus       171 G-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  247 (373)
                      | .|.++...               .....||.+|.++++.+.+......-....|+|||+.++++...  ...|+++++
T Consensus       244 G~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl  308 (419)
T PRK04043        244 GSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL  308 (419)
T ss_pred             CCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence            9 57666432               13468999998888766653322222345799999988887643  237888888


Q ss_pred             cCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317          248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva  280 (373)
                      ++....   .....  +. .+...++||...+-
T Consensus       309 ~~g~~~---rlt~~--g~-~~~~~SPDG~~Ia~  335 (419)
T PRK04043        309 NSGSVE---QVVFH--GK-NNSSVSTYKNYIVY  335 (419)
T ss_pred             CCCCeE---eCccC--CC-cCceECCCCCEEEE
Confidence            764322   22111  11 23477888974433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.10  E-value=0.002  Score=57.05  Aligned_cols=125  Identities=15%  Similarity=0.151  Sum_probs=78.6

Q ss_pred             ceEEEcc--CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC-----CCceeECCCCCEEEEEecCCCchhhhcc
Q 017317          221 NGVALSK--DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG-----PDNIKLAPDGSFWIAILQLSSPGLEFVH  293 (373)
Q Consensus       221 ~gi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-----p~~i~~d~dG~lwva~~~~~~~~~~~~~  293 (373)
                      .|+++..  .+++||.++..+.+|.+||-.=.+......|.  .|..     |-||. .-.|+|||+-......-.+   
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~--DP~iPagyAPFnIq-nig~~lyVtYA~qd~~~~d---  214 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI--DPALPAGYAPFNVQ-NLGGTLYVTYAQQDADRND---  214 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc--CCCCCCCCCCcceE-EECCeEEEEEEecCCcccc---
Confidence            5777764  36789999999999999973211111111222  2333     44443 3467899986532110000   


Q ss_pred             CChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE--e-----CCEEEEeeCCCCeEE
Q 017317          294 TSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE--F-----DDHLYLGSLNTNFIG  366 (373)
Q Consensus       294 ~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~--~-----~g~L~vgs~~~~~i~  366 (373)
                                      +  -.....|.|-.||.+|+.++.+.+..-  .+.+..+..  .     .|.|.||+++.-+|-
T Consensus       215 ----------------~--v~G~G~G~VdvFd~~G~l~~r~as~g~--LNaPWG~a~APa~FG~~sg~lLVGNFGDG~In  274 (336)
T TIGR03118       215 ----------------E--VAGAGLGYVNVFTLNGQLLRRVASSGR--LNAPWGLAIAPESFGSLSGALLVGNFGDGTIN  274 (336)
T ss_pred             ----------------c--ccCCCcceEEEEcCCCcEEEEeccCCc--ccCCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence                            0  025677889999999999999864332  455555543  1     378999999999999


Q ss_pred             EeeCC
Q 017317          367 KLPLK  371 (373)
Q Consensus       367 ~~~l~  371 (373)
                      .++..
T Consensus       275 aFD~~  279 (336)
T TIGR03118       275 AYDPQ  279 (336)
T ss_pred             EecCC
Confidence            98875

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.0027  Score=55.96  Aligned_cols=157  Identities=11%  Similarity=0.069  Sum_probs=96.5

Q ss_pred             EeccCCcCCcceEEEecCCCEEE-EecCCeEEEEEcC-CceEEeeeecCccccCeEECCCCcEEEEECCC-cEEEEe-c-
Q 017317           70 RLGEGILNGPEDVCVDRNGVLYT-ATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-E-  144 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~v-~~~~g~I~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~-gl~~~~-~-  144 (373)
                      +.+.|--..-.+|.+.|.+..++ ++.+..|..||.. -+-.......++|.  .++|++|-++++..+. .|-.+| + 
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecc
Confidence            33444444456677777667774 4467778777722 12122223344554  7899999888764443 455566 3 


Q ss_pred             --CC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC----
Q 017317          145 --EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----  216 (373)
Q Consensus       145 --~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----  216 (373)
                        .| .+.+.-..  ......++|.+.+||. |.+++..                  +-++.+|.-+|.+..-...    
T Consensus       172 ~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~  231 (311)
T KOG1446|consen  172 FDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNA  231 (311)
T ss_pred             cCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCC
Confidence              45 55543221  2234578999999995 6777643                  6788888777765443332    


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ...|-+-.++||+++++.+ ..+++|+.|++..
T Consensus       232 ~~~~~~a~ftPds~Fvl~g-s~dg~i~vw~~~t  263 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLSG-SDDGTIHVWNLET  263 (311)
T ss_pred             CCcceeEEECCCCcEEEEe-cCCCcEEEEEcCC
Confidence            2334477889999955554 5678999998753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.0035  Score=60.39  Aligned_cols=172  Identities=15%  Similarity=0.135  Sum_probs=98.8

Q ss_pred             ceEEEecCCCEE--EEec--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEE-CCC--cEEEEe-cCC-cE
Q 017317           80 EDVCVDRNGVLY--TATR--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-ADK--GLLKVT-EEG-VT  148 (373)
Q Consensus        80 ~~ia~d~~G~l~--v~~~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~-~~~--gl~~~~-~~g-~~  148 (373)
                      .+..+.|+|+..  +...  +..|+.++ ..|+.+.+....+... .+++.+||+ |+++. ..+  .|+.++ .++ .+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~  285 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS  285 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence            445777887633  3322  24688888 4455544443334445 788999996 54443 222  367777 455 55


Q ss_pred             EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~  227 (373)
                      .+... .    .......+.|||+ |+++...               ...-.||.++..++..+.+ ....  ....++|
T Consensus       286 ~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp  342 (429)
T PRK01742        286 QLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGRG--YSAQISA  342 (429)
T ss_pred             eeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCCC--CCccCCC
Confidence            44321 1    1245678999996 6665321               1234789998876655544 2211  3467999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ||+.++++..  ..++++|+.+..   .......  .......+++||++.+...
T Consensus       343 DG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~--~~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        343 DGKTLVMING--DNVVKQDLTSGS---TEVLSST--FLDESPSISPNGIMIIYSS  390 (429)
T ss_pred             CCCEEEEEcC--CCEEEEECCCCC---eEEecCC--CCCCCceECCCCCEEEEEE
Confidence            9998887754  568888875432   1222111  1123466889998655543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.04  E-value=0.0014  Score=58.49  Aligned_cols=192  Identities=14%  Similarity=0.130  Sum_probs=114.8

Q ss_pred             CcCCcceEEEecCCCEEEEecCCeEEEE---E---cCCceE-----Eee----ee--cCccccCeEECCCCcEEEEECC-
Q 017317           75 ILNGPEDVCVDRNGVLYTATRDGWIKRL---H---KNGTWE-----NWK----LI--GGDTLLGITTTQENEILVCDAD-  136 (373)
Q Consensus        75 ~~~~P~~ia~d~~G~l~v~~~~g~I~~~---~---~~g~~~-----~~~----~~--~~~p~~gl~~d~~g~L~va~~~-  136 (373)
                      .+..|++++.. .++||+++.. .|+++   +   ..++..     .+.    ..  .-..+ .|++ .++.+|+.+.. 
T Consensus        47 ~F~r~MGl~~~-~~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~f  122 (335)
T TIGR03032        47 TFPRPMGLAVS-PQSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLF  122 (335)
T ss_pred             ccCccceeeee-CCeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcc
Confidence            37889999997 5789998854 57777   3   111110     010    01  12346 7888 56788776543 


Q ss_pred             CcEEEEecCC-cEEE-----eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317          137 KGLLKVTEEG-VTVL-----ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (373)
Q Consensus       137 ~gl~~~~~~g-~~~l-----~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  210 (373)
                      .-+..+++.- ....     .+....+.--..|+|+.....--||+.-+    ..+....=.+.+.+|++. +|-.++  
T Consensus       123 SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~----~sD~~~gWR~~~~~gG~v-idv~s~--  195 (335)
T TIGR03032       123 SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALS----QSDVADGWREGRRDGGCV-IDIPSG--  195 (335)
T ss_pred             eeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEee----ccCCcccccccccCCeEE-EEeCCC--
Confidence            4456666433 2221     11111111124688888643357877422    222111112233445554 665555  


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCC
Q 017317          211 SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLS  285 (373)
Q Consensus       211 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~  285 (373)
                      +.+.+++.+|++--|.. |+ ||+++++.+.+.+++.+   .+..+... ..+|+|.|+.+.  |++ +|+....|
T Consensus       196 evl~~GLsmPhSPRWhd-gr-LwvldsgtGev~~vD~~---~G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R  263 (335)
T TIGR03032       196 EVVASGLSMPHSPRWYQ-GK-LWLLNSGRGELGYVDPQ---AGKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR  263 (335)
T ss_pred             CEEEcCccCCcCCcEeC-Ce-EEEEECCCCEEEEEcCC---CCcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence            45788999999988874 44 99999999999999854   24455554 678999999997  765 56666665

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.98  E-value=0.012  Score=55.47  Aligned_cols=184  Identities=18%  Similarity=0.210  Sum_probs=101.9

Q ss_pred             cceEEEecCCCEEE-EecCCeEEEEE-cCCceEE-ee---eecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cE
Q 017317           79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNGTWEN-WK---LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        79 P~~ia~d~~G~l~v-~~~~g~I~~~~-~~g~~~~-~~---~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~  148 (373)
                      -.++-+.|||..++ ...+|.|+.+| .+|+..- +.   ...+... +|++.||+.-++ +..++.+-.+| .+.  .+
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            35677889999995 44889999999 6675433 22   1234456 888888885443 34334344444 222  22


Q ss_pred             EEee--ccCC------------------------------------ccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317          149 VLAS--HVNG------------------------------------SRINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (373)
Q Consensus       149 ~l~~--~~~~------------------------------------~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~  190 (373)
                      .+..  ....                                    .....+.++++.+||...++              
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S--------------  337 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS--------------  337 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe--------------
Confidence            2211  0000                                    01123444555555533233              


Q ss_pred             cccccCCceEEEEeCCCCeEEEeecCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc
Q 017317          191 LLEAKPHGKLLKYDPSLNETSILLDSL--FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN  268 (373)
Q Consensus       191 ~~~~~~~g~l~~~d~~~~~~~~~~~~~--~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~  268 (373)
                         +...|.|..++..++....+....  ..-.+++.+..+. ++ +...++.+.++.+.+......+.+  .+...|.+
T Consensus       338 ---gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~-t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~  410 (603)
T KOG0318|consen  338 ---GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LF-TIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKG  410 (603)
T ss_pred             ---eccCceEEEEecCCccccccccccccceEEEEeecCCCc-EE-EEecCCeEEEEecccCccccccee--ecCCCcee
Confidence               234578888887666544443222  2335666665454 44 445678899988766544444332  24456889


Q ss_pred             eeECCCCCEE-EEEecC
Q 017317          269 IKLAPDGSFW-IAILQL  284 (373)
Q Consensus       269 i~~d~dG~lw-va~~~~  284 (373)
                      ++..++|.+- +++...
T Consensus       411 lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACISD  427 (603)
T ss_pred             EEEcCCCCEEEEEecCc
Confidence            9999998654 444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.015  Score=56.01  Aligned_cols=133  Identities=16%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             CeEECCCCc-E-EEEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccc
Q 017317          121 GITTTQENE-I-LVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       121 gl~~d~~g~-L-~va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~  193 (373)
                      ...+.+||+ | |+....  ..|+.++ .+| .+.+.. ..+    ......+.|||+ |+++...              
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~--------------  263 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSK--------------  263 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEcc--------------
Confidence            778889996 4 444322  2478888 666 555432 121    123568899995 6665422              


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeE
Q 017317          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL  271 (373)
Q Consensus       194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  271 (373)
                       .....||.+|.++++.+.+...........|++||+.++++...  ...|+++++.+.+.   +.+... .........
T Consensus       264 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt~~-~~~~~~~~~  338 (430)
T PRK00178        264 -DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVTFV-GNYNARPRL  338 (430)
T ss_pred             -CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEeecC-CCCccceEE
Confidence             12247999999888776654433334557899999988776532  34688888755432   222111 112234567


Q ss_pred             CCCCCE
Q 017317          272 APDGSF  277 (373)
Q Consensus       272 d~dG~l  277 (373)
                      ++||+.
T Consensus       339 Spdg~~  344 (430)
T PRK00178        339 SADGKT  344 (430)
T ss_pred             CCCCCE
Confidence            788864

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.009  Score=57.98  Aligned_cols=181  Identities=18%  Similarity=0.193  Sum_probs=103.6

Q ss_pred             cceEEEecCCCEEEEe-cCCeEEEEEc-CCc--eEEeeeec-CccccCeEECCCCcEEEEEC-CCcEEEEe-cC-C--cE
Q 017317           79 PEDVCVDRNGVLYTAT-RDGWIKRLHK-NGT--WENWKLIG-GDTLLGITTTQENEILVCDA-DKGLLKVT-EE-G--VT  148 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~-~~g~I~~~~~-~g~--~~~~~~~~-~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~-g--~~  148 (373)
                      -.++.+.++|+..+.. .++.+..+.. .++  ........ .... .+++.++|...++.. +..+..++ ++ +  .+
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~  240 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK  240 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence            3345667788876544 5555554443 222  11111111 2245 889999998666533 34455566 33 3  33


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~  227 (373)
                      .+..+     ...+++++|.++|++.++.+.                 .+.|..+|..+++........ ..-+++++++
T Consensus       241 ~l~gH-----~~~v~~~~f~p~g~~i~Sgs~-----------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  241 TLKGH-----STYVTSVAFSPDGNLLVSGSD-----------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             EecCC-----CCceEEEEecCCCCEEEEecC-----------------CCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence            33221     235689999999988888654                 467777787776665544443 3457899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCCE-EEEEec
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGSF-WIAILQ  283 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~l-wva~~~  283 (373)
                      |++.++.+ ..++.|..||.......-....... .+.....+.++++|.+ |++..+
T Consensus       299 d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  299 DGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             CCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            99955555 6677888888765431101111111 1111255778899964 444443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.93  E-value=0.014  Score=55.80  Aligned_cols=175  Identities=15%  Similarity=0.145  Sum_probs=100.3

Q ss_pred             EEEecCCCEE-EEe-c--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEE
Q 017317           82 VCVDRNGVLY-TAT-R--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVL  150 (373)
Q Consensus        82 ia~d~~G~l~-v~~-~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l  150 (373)
                      .++.++|+.. ... .  ...|+.++ .+|+.+.+....+... ++++.+||+ |+++...   ..|+.++ .++ .+.+
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence            3466667633 333 2  24688888 4555554443344455 788999986 6554322   2488888 555 4444


Q ss_pred             eeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg  229 (373)
                      ... .+    ......+.+||+ |+++...               .....||.+|.++++.+.+...........+++||
T Consensus       274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       274 TNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence            321 11    122446788885 5554321               12247999998877766554444445678899999


Q ss_pred             CEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          230 DYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       230 ~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      +.++++....  .+|+.+++.+.   ....+..  ........+.+||+ |+++..
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEe
Confidence            9888876543  36778876542   2222221  12233456778886 444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.87  E-value=0.028  Score=53.76  Aligned_cols=159  Identities=12%  Similarity=0.072  Sum_probs=89.4

Q ss_pred             eEEEEEcCCc-eEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .|+..+.+|. .+.+........ ...+++||+ |+.+...   ..|+.++ .+| .+.+.. ..+    ....+++.+|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            4666665443 333333222344 677889996 3333322   2477777 666 544432 121    2335788999


Q ss_pred             Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC--CCCeEEEEEe
Q 017317          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FKFRCLKYWL  247 (373)
Q Consensus       171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~  247 (373)
                      |. |+++...               .....||.+|.++++.+.+...........|++||+.++++..  +...|+.+++
T Consensus       245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            95 7666432               1234699999887776655433222345689999998876643  2346888887


Q ss_pred             cCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      .+...   ..+. ..........++++|+..+.+
T Consensus       310 ~~~~~---~~l~-~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       310 DGGEV---RRLT-FRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             CCCCE---EEee-cCCCCccCeEECCCCCEEEEE
Confidence            65332   2222 112234456778888754443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.85  E-value=0.007  Score=54.32  Aligned_cols=155  Identities=13%  Similarity=0.129  Sum_probs=87.6

Q ss_pred             EEEecCCCEEEEe------cCCeEEEEEcCCceE---EeeeecCccccCeEECCCC-cEEEEECC---------------
Q 017317           82 VCVDRNGVLYTAT------RDGWIKRLHKNGTWE---NWKLIGGDTLLGITTTQEN-EILVCDAD---------------  136 (373)
Q Consensus        82 ia~d~~G~l~v~~------~~g~I~~~~~~g~~~---~~~~~~~~p~~gl~~d~~g-~L~va~~~---------------  136 (373)
                      -++++||++...+      ..|.|-++|......   .+...+-.|+ -|.+.+|| .|.||+.+               
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            4556677765444      347788888543333   3333445688 99999999 78888642               


Q ss_pred             ---CcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317          137 ---KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (373)
Q Consensus       137 ---~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  210 (373)
                         -.|..+| .+|  ++... -.+.....++..|+++++|.+|++....  +...      +  ..--|..++.. ...
T Consensus       135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q--g~~~------~--~~PLva~~~~g-~~~  202 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQYQ--GDPG------D--APPLVALHRRG-GAL  202 (305)
T ss_pred             hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEecC--CCCC------c--cCCeEEEEcCC-Ccc
Confidence               1233333 333  11111 1112233467889999999999996531  1100      0  11123344433 222


Q ss_pred             EEeec------CC-CCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          211 SILLD------SL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       211 ~~~~~------~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +.+.-      .+ ...-.|+++.+++.+.++.-..+++..|+...
T Consensus       203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            22211      11 23356999999997888887778888887543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.84  E-value=0.017  Score=50.32  Aligned_cols=219  Identities=14%  Similarity=0.130  Sum_probs=132.1

Q ss_pred             CEEEEecCCeEEEEEcC------CceE-EeeeecCccccCeEECCCCcEEEEECCCc-EEEEe-cCC--cEEEeeccCCc
Q 017317           89 VLYTATRDGWIKRLHKN------GTWE-NWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG--VTVLASHVNGS  157 (373)
Q Consensus        89 ~l~v~~~~g~I~~~~~~------g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~-~~g--~~~l~~~~~~~  157 (373)
                      .++.++.+-.|+.++.+      |... .+........ +++..+||+..++....+ +..+| .+|  .+.+..+.   
T Consensus        30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~---  105 (315)
T KOG0279|consen   30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT---  105 (315)
T ss_pred             eEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC---
Confidence            44456667777776621      2221 2221122345 778889998877644444 45566 666  33343221   


Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCC-CEEEE
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDE-DYLVV  234 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg-~~l~v  234 (373)
                        ..+..+++++|.+-.++.+.                 ...|..+|..+...-.+.+.  -...+-+.|+|.. +-+++
T Consensus       106 --~dVlsva~s~dn~qivSGSr-----------------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen  106 --KDVLSVAFSTDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             --CceEEEEecCCCceeecCCC-----------------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence              24568899999988887543                 34566677654433333333  3456778999986 43444


Q ss_pred             EeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC
Q 017317          235 CETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP  314 (373)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  314 (373)
                      ....+..+..+++.+-+...  .+. ...++.+-+++++||.+-.....                               
T Consensus       167 s~s~DktvKvWnl~~~~l~~--~~~-gh~~~v~t~~vSpDGslcasGgk-------------------------------  212 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRT--TFI-GHSGYVNTVTVSPDGSLCASGGK-------------------------------  212 (315)
T ss_pred             EccCCceEEEEccCCcchhh--ccc-cccccEEEEEECCCCCEEecCCC-------------------------------
Confidence            44455555556655433221  222 23456677889999998776322                               


Q ss_pred             CCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          315 LHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       315 ~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                         .|.++..| .+|+-++++..     +..+.++++.+++.|+.-.-+..|-..++..
T Consensus       213 ---dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~~  263 (315)
T KOG0279|consen  213 ---DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLES  263 (315)
T ss_pred             ---CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEeccc
Confidence               24456666 45777776643     3468889999999999998888888887753

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.83  E-value=0.0035  Score=61.44  Aligned_cols=170  Identities=12%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             ecCCC-EEEEe-cCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCc-EEEEECC----CcEEEEe-cCC-cEEEeecc
Q 017317           85 DRNGV-LYTAT-RDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDAD----KGLLKVT-EEG-VTVLASHV  154 (373)
Q Consensus        85 d~~G~-l~v~~-~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~----~gl~~~~-~~g-~~~l~~~~  154 (373)
                      .++|+ ++..+ ..+.+..+|.+. ++.......++|. .+.++++|. +|++.+.    ..+..++ .+. ...... .
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i  278 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-I  278 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-h
Confidence            34665 33322 456677777432 3322233467888 999999885 6676421    1233333 111 111111 0


Q ss_pred             CCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC-----CeEEEeecCCCCcceEEEccC
Q 017317          155 NGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-----NETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      .     ..  -+..++|. .|+.                    .+.|-.+|..+     .++.....-...|.|+.++||
T Consensus       279 ~-----~i--ea~vkdGK~~~V~--------------------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD  331 (635)
T PRK02888        279 A-----RI--EEAVKAGKFKTIG--------------------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD  331 (635)
T ss_pred             H-----HH--HHhhhCCCEEEEC--------------------CCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence            0     00  02223553 4442                    14788899876     345555666788999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCC------Cccee-EEec-CCCCCCCceeECCCCCEEEEEec
Q 017317          229 EDYLVVCETFKFRCLKYWLKGES------KEQTE-IFVE-NLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~------~~~~~-~~~~-~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      |+++|+++...+.+..+|+...+      +.... +..+ .+.-.|-..++|.+|+.|++..-
T Consensus       332 GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~  394 (635)
T PRK02888        332 GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL  394 (635)
T ss_pred             CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee
Confidence            99999999999999999975321      11111 1221 12335888999999999998764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.80  E-value=0.018  Score=49.42  Aligned_cols=177  Identities=10%  Similarity=0.108  Sum_probs=101.0

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCc---eEEeeeecCccccCeEECCCCcEEEEECCCcEEEE-e-cCC-cEEEeecc
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGT---WENWKLIGGDTLLGITTTQENEILVCDADKGLLKV-T-EEG-VTVLASHV  154 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~---~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~-~-~~g-~~~l~~~~  154 (373)
                      +.+.+++...++..+..|..+| ..++   +..+.....+.. .+.|..+|+-.......|..++ | +.- .+......
T Consensus        46 LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt-aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~  124 (311)
T KOG0315|consen   46 LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT-AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN  124 (311)
T ss_pred             EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE-EEEEeecCeEEEecCCCceEEEEeccCcccchhccCC
Confidence            6677777776555555666666 2222   333433335556 7777778875444444555554 3 332 22221111


Q ss_pred             CCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecCCCCcceEEEccCCCE
Q 017317          155 NGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~~~~~~gi~~~~dg~~  231 (373)
                           ..+|.+...|+ +.|+++|.+                  |.|+.+|........  +-+....-..+++.+||+ 
T Consensus       125 -----spVn~vvlhpnQteLis~dqs------------------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-  180 (311)
T KOG0315|consen  125 -----SPVNTVVLHPNQTELISGDQS------------------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-  180 (311)
T ss_pred             -----CCcceEEecCCcceEEeecCC------------------CcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-
Confidence                 24688888886 578888754                  788888876554322  223334456899999999 


Q ss_pred             EEEEeCCCCeEEEEEecCCC-CcceeEEe--cCCCCCCCceeECCCCCEEEEEec
Q 017317          232 LVVCETFKFRCLKYWLKGES-KEQTEIFV--ENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~-~~~~~~~~--~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ++++-.+.++.+++++-+.. ...++...  +.-.++.-...+++|+.+.+++..
T Consensus       181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence            55555567788888875432 12221111  011233444567888887777654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.79  E-value=0.043  Score=53.76  Aligned_cols=255  Identities=11%  Similarity=0.044  Sum_probs=125.1

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecCc------cccCeEECCCCcEEEEEC---------CCcEEEEe-cCC-cE
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGD------TLLGITTTQENEILVCDA---------DKGLLKVT-EEG-VT  148 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~------p~~gl~~d~~g~L~va~~---------~~gl~~~~-~~g-~~  148 (373)
                      ++.+|+++.+|.|+.+| .+|+..-.......      ...+..+. ++.+|++..         ...++.+| .+| ..
T Consensus       110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            38999999999999999 56765432222111      11133443 467777642         23578888 677 43


Q ss_pred             EEeeccCCc----cc-------------cccceeEEcC-CCcEEEEeCCcc---ccccccccccccccCCceEEEEeCCC
Q 017317          149 VLASHVNGS----RI-------------NLADDLIAAT-DGSIYFSVASTK---FGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       149 ~l~~~~~~~----~~-------------~~~~~l~~~~-dG~l~v~~~~~~---~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      .-.......    +.             ..-...++|+ +|.+||......   ++.+.   ........+.|+.+|.++
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~---~~~~~~~~~~l~Ald~~t  265 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRR---TPGDNLYTDSIVALDADT  265 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCcc---CCCCCCceeeEEEEcCCC
Confidence            322211100    00             0011346664 568999864310   00000   000112345899999998


Q ss_pred             CeEEEeecCC-------CCcceEEEc----cCCC---EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317          208 NETSILLDSL-------FFANGVALS----KDED---YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (373)
Q Consensus       208 ~~~~~~~~~~-------~~~~gi~~~----~dg~---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  273 (373)
                      ++........       ..+....+.    -+|+   .+|+. +.++.++.++....+........      -.+++.++
T Consensus       266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~  338 (488)
T cd00216         266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLISARPEV------EQPMAYDP  338 (488)
T ss_pred             CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEeeEeEee------ccccccCC
Confidence            8866432211       111111111    2333   34444 45677999987543322211111      12244444


Q ss_pred             CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCc------eeccee
Q 017317          274 DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGK------VMSFVT  346 (373)
Q Consensus       274 dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~------~~~~~~  346 (373)
                       +.+|+..........+    ..             ...-.....|.+..+| .+|+.+-........      ......
T Consensus       339 -~~vyv~~~~~~~~~~~----~~-------------~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~  400 (488)
T cd00216         339 -GLVYLGAFHIPLGLPP----QK-------------KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG  400 (488)
T ss_pred             -ceEEEccccccccCcc----cc-------------cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc
Confidence             7788875321100000    00             0000123457789999 578887766543111      001123


Q ss_pred             EEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          347 SALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       347 ~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                      .+...++.||+|+..+ .|.-++..
T Consensus       401 ~~~~~g~~v~~g~~dG-~l~ald~~  424 (488)
T cd00216         401 SLATAGNLVFAGAADG-YFRAFDAT  424 (488)
T ss_pred             ceEecCCeEEEECCCC-eEEEEECC
Confidence            4445678999998544 57766654

The alignment model contains an 8-bladed beta-propeller.

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.79  E-value=0.012  Score=51.53  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=107.1

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECC-CCcEEEEEC-CCcEEEEe-cCC--cEEEee
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQ-ENEILVCDA-DKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~-~g~L~va~~-~~gl~~~~-~~g--~~~l~~  152 (373)
                      .+.-+-.|+.|.+++.+.....+| ..|+ ...|....+... +|.+.| +++.||... ......+| +++  .+.+..
T Consensus       149 ScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g  227 (343)
T KOG0286|consen  149 SCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG  227 (343)
T ss_pred             EEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence            334444489999999998888888 5665 445555566778 888888 889998632 23345566 666  454432


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEEeec--CCCCcceEEEccCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLD--SLFFANGVALSKDE  229 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~--~~~~~~gi~~~~dg  229 (373)
                      +.     .-+|.+.+-|+|.-+.+.+.                 .+..-.||.... +...+..  .....++++|+..|
T Consensus       228 he-----sDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG  285 (343)
T KOG0286|consen  228 HE-----SDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG  285 (343)
T ss_pred             cc-----cccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence            21     24789999999988887553                 344444554432 3333322  23345789999999


Q ss_pred             CEEEEEeCCCCeEEEEEe-cCCCCcceeEEecCCCCCCCceeECCCCCEEE
Q 017317          230 DYLVVCETFKFRCLKYWL-KGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwv  279 (373)
                      + |+++.-.+..+.++|. +++..+   .+. .-......+.+.+||.-..
T Consensus       286 R-lLfagy~d~~c~vWDtlk~e~vg---~L~-GHeNRvScl~~s~DG~av~  331 (343)
T KOG0286|consen  286 R-LLFAGYDDFTCNVWDTLKGERVG---VLA-GHENRVSCLGVSPDGMAVA  331 (343)
T ss_pred             c-EEEeeecCCceeEeeccccceEE---Eee-ccCCeeEEEEECCCCcEEE
Confidence            9 5555556677888873 333222   121 2223566677888885433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.78  E-value=0.02  Score=55.09  Aligned_cols=153  Identities=12%  Similarity=0.088  Sum_probs=83.9

Q ss_pred             eEEEEEcCCc-eEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .|+..|.+|. ...+........ ...+.+||+ |..+...   ..|+.++ .+| .+.+.. ..+    ....+++.||
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence            4555554443 222222222345 788999996 3333222   2377888 666 555432 222    1235789999


Q ss_pred             Cc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--CCeEEEEEe
Q 017317          171 GS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--KFRCLKYWL  247 (373)
Q Consensus       171 G~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  247 (373)
                      |+ |+++...               ...-.||.+|.++++.+.+..........+|+|||+.++++...  ...|+.++.
T Consensus       259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            96 5554321               12236899998877766554433345678999999988876543  335666654


Q ss_pred             cCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317          248 KGESKEQTEIFVENLPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       248 ~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw  278 (373)
                      .+...   ... .. .+  .+..+.+||+..
T Consensus       324 ~~~~~---~~l-~~-~~--~~~~~SpDG~~i  347 (429)
T PRK01742        324 SGGGA---SLV-GG-RG--YSAQISADGKTL  347 (429)
T ss_pred             CCCCe---EEe-cC-CC--CCccCCCCCCEE
Confidence            44321   121 11 11  235567788643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.76  E-value=0.0075  Score=56.57  Aligned_cols=149  Identities=13%  Similarity=0.133  Sum_probs=93.9

Q ss_pred             cCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeee-cCccccCeEECCCCcEEEEECCCcEEE-EecCCcEEEeec
Q 017317           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLK-VTEEGVTVLASH  153 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~-~~~~g~~~l~~~  153 (373)
                      +..++.|+... +.||+|+..+.|+.=+-.+.++..... ..... |++..++.++|+.....+.++ +++...+ ....
T Consensus       329 ~G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~-wt~~  405 (626)
T KOG2106|consen  329 FGPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLE-WTKI  405 (626)
T ss_pred             cCCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCcee-EEEE
Confidence            45567777764 449999988888776633333332222 23456 999999888888755444444 3322211 1111


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  233 (373)
                      ..    .....+.++|.|.+-++..                  .|+.+.+|.++.....+......-+-+.++|||.++-
T Consensus       406 ~~----d~~~~~~fhpsg~va~Gt~------------------~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  406 IE----DPAECADFHPSGVVAVGTA------------------TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             ec----CceeEeeccCcceEEEeec------------------cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEE
Confidence            11    1245778999996666653                  4889999988765544444444457899999999666


Q ss_pred             EEeCCCCeEEEEEecCC
Q 017317          234 VCETFKFRCLKYWLKGE  250 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~~  250 (373)
                      |.. -++.|+.|.++..
T Consensus       464 vgs-~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  464 VGS-HDNHIYIYRVSAN  479 (626)
T ss_pred             Eec-CCCeEEEEEECCC
Confidence            664 5677888877643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.76  E-value=0.019  Score=55.75  Aligned_cols=151  Identities=18%  Similarity=0.222  Sum_probs=98.8

Q ss_pred             CCcCCcceEEEecCCCEE-EEecCCeEEEEEc-CC-c-eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-
Q 017317           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-T-WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-  146 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g-~-~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-  146 (373)
                      +.-..-.++++.++|... .++.+..|..++. +. . .+++........ +++|.++|++++. ..+..+..++ ++| 
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            444556678888999755 4557788888873 33 3 334433344556 9999999987765 4444566667 666 


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE--EeecCCCCc---
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLDSLFFA---  220 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~--~~~~~~~~~---  220 (373)
                       .+.+..+.     ..+.++++.++|++.++.+.                 .+.|..+|..+++..  ........+   
T Consensus       280 ~~~~l~~hs-----~~is~~~f~~d~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  337 (456)
T KOG0266|consen  280 CVRKLKGHS-----DGISGLAFSPDGNLLVSASY-----------------DGTIRVWDLETGSKLCLKLLSGAENSAPV  337 (456)
T ss_pred             EEEeeeccC-----CceEEEEECCCCCEEEEcCC-----------------CccEEEEECCCCceeeeecccCCCCCCce
Confidence             44443322     25778999999987777542                 578899999888732  233333334   


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      .-+.++|++++++.... ++.+..+++.
T Consensus       338 ~~~~fsp~~~~ll~~~~-d~~~~~w~l~  364 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLSASL-DRTLKLWDLR  364 (456)
T ss_pred             eEEEECCCCcEEEEecC-CCeEEEEEcc
Confidence            67899999997777643 4456666655

>PRK13684 Ycf48-like protein; Provisional

Probab=97.74  E-value=0.023  Score=52.73  Aligned_cols=224  Identities=9%  Similarity=0.061  Sum_probs=113.5

Q ss_pred             eEEEecCCCEEEEecCCeEEEEEcCC-ceEEeee---ecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeecc
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHV  154 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~~  154 (373)
                      +++++ ++..|+....|.|++-...| .++.+..   ..+.+. .+....++.+|++.....+++-++.|  .+.+....
T Consensus        94 ~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~  171 (334)
T PRK13684         94 SISFK-GDEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA  171 (334)
T ss_pred             eeEEc-CCcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence            34454 34567655666676654323 3444321   223455 55444455677766544566655444  44443222


Q ss_pred             CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE-eCCCCeEEEeecC-CCCcceEEEccCCCEE
Q 017317          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLNETSILLDS-LFFANGVALSKDEDYL  232 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l  232 (373)
                          ....+++.+.++|.+++...                  .|.+++- +..+...+.+... ....+++++.++++ +
T Consensus       172 ----~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~  228 (334)
T PRK13684        172 ----AGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L  228 (334)
T ss_pred             ----cceEEEEEECCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence                22457888888886665543                  2667665 2222234443222 23457788888887 5


Q ss_pred             EEEeCCCCeEEEEE-ecCCCCcceeEEecC-C-C-CCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          233 VVCETFKFRCLKYW-LKGESKEQTEIFVEN-L-P-GGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       233 ~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~-~-~-g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      |++..  .+..++. .++..  ........ . . ...-.+++.+++++|++...+                        
T Consensus       229 ~~vg~--~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G------------------------  280 (334)
T PRK13684        229 WMLAR--GGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG------------------------  280 (334)
T ss_pred             EEEec--CCEEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEEcCCC------------------------
Confidence            55543  2344442 22211  11111100 0 0 112345667788999987654                        


Q ss_pred             hhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEE-EeCCEEEEeeCCCCeEEEeeC
Q 017317          309 IKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSAL-EFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~L~vgs~~~~~i~~~~l  370 (373)
                                 .++.-...|+..+....+.+... ....+. ..++++|+.+..+- |.+++-
T Consensus       281 -----------~v~~S~d~G~tW~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~G~-il~~~~  330 (334)
T PRK13684        281 -----------TLLVSKDGGKTWEKDPVGEEVPS-NFYKIVFLDPEKGFVLGQRGV-LLRYVG  330 (334)
T ss_pred             -----------eEEEeCCCCCCCeECCcCCCCCc-ceEEEEEeCCCceEEECCCce-EEEecC
Confidence                       24443445676665433233322 334444 44678888887664 655543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.74  E-value=0.02  Score=50.81  Aligned_cols=68  Identities=10%  Similarity=0.012  Sum_probs=45.2

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG  146 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g  146 (373)
                      .+++-+.+-|.+. +|..+|+|+.+|- +-.........-+|.+++++.++|++.+. .....+..+| .+|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence            6788888888877 8999999999983 22222222223456669999999986665 4444556666 444

>PRK13684 Ycf48-like protein; Provisional

Probab=97.74  E-value=0.038  Score=51.28  Aligned_cols=178  Identities=16%  Similarity=0.196  Sum_probs=88.0

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeee----cCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEe
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~----~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~  151 (373)
                      ..+|++..+.+.|+....|.|++-...| .++.....    ..... .++++. ++.|++.....+++-.+.|  .+.+.
T Consensus        48 l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~  125 (334)
T PRK13684         48 LLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIP  125 (334)
T ss_pred             eEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEcC-CcEEEeCCCceEEEECCCCCCCeEcc
Confidence            4556776566767444567777654333 34433211    11234 677763 4577765444455543434  44432


Q ss_pred             ec--cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccC
Q 017317          152 SH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKD  228 (373)
Q Consensus       152 ~~--~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~d  228 (373)
                      ..  .++    .+..+....++.+|+...                  .|.|++-+..++..+.+.... ...+++.++++
T Consensus       126 ~~~~~~~----~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~  183 (334)
T PRK13684        126 LSEKLPG----SPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPD  183 (334)
T ss_pred             CCcCCCC----CceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECCC
Confidence            11  111    223333333455666543                  367777765544555543322 23456788888


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +.. ++.. .+..+++-.-++.  ...............++.+.++|++|+....+
T Consensus       184 g~~-v~~g-~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G  235 (334)
T PRK13684        184 GKY-VAVS-SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG  235 (334)
T ss_pred             CeE-EEEe-CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence            753 3332 3345555321221  11222211222345567778889999886554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.72  E-value=0.031  Score=51.62  Aligned_cols=187  Identities=13%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             CeEECCCCcEEEEECCCcEEEEe--cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317          121 GITTTQENEILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      ++...+.|+.++.....+-+.|.  .+|  ...+...  + ..-.....++.|||.|+.+..                 .
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~-s~v~~ts~~fHpDgLifgtgt-----------------~  367 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--T-SDVEYTSAAFHPDGLIFGTGT-----------------P  367 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--c-ccceeEEeeEcCCceEEeccC-----------------C
Confidence            88888999866654455666555  667  3333322  1 112345789999999987743                 3


Q ss_pred             CceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG  275 (373)
                      +|.|-.+|.+......-+.+...| ..|+|+..|-+ +++...+..|..+|+.-  ...+..+.-...--...+.+|..|
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~SG  444 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQSG  444 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEehh--hcccceeeccccccceeEEEcCCC
Confidence            466666776543311112222222 46889988854 44444555688888742  223333331111124568899999


Q ss_pred             CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEE---EEEeCCCCceecceeEEEEeC
Q 017317          276 SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVI---RKFEDPNGKVMSFVTSALEFD  352 (373)
Q Consensus       276 ~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~---~~~~~~~g~~~~~~~~~~~~~  352 (373)
                      .+.+.....                                  -.|+.+....+..   ..+++..|    ..+.+.+.+
T Consensus       445 t~L~~~g~~----------------------------------l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~  486 (506)
T KOG0289|consen  445 TYLGIAGSD----------------------------------LQVYICKKKTKSWTEIKELADHSG----LSTGVRFGE  486 (506)
T ss_pred             CeEEeecce----------------------------------eEEEEEecccccceeeehhhhccc----ccceeeecc
Confidence            876665221                                  1356666444332   33344333    356777766


Q ss_pred             CEEEEeeCCCCeEEEe
Q 017317          353 DHLYLGSLNTNFIGKL  368 (373)
Q Consensus       353 g~L~vgs~~~~~i~~~  368 (373)
                      ..-|+++-..+.+.++
T Consensus       487 ~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  487 HAQYLASTSMDAILRL  502 (506)
T ss_pred             cceEEeeccchhheEE
Confidence            6677777666666543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.71  E-value=0.02  Score=56.12  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=63.6

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecC---------ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeecc
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG---------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV  154 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~---------~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~  154 (373)
                      +|++|+++.++.++.+| .+|+..-......         ... ++++..++.+|+++....++.+| ++| ...-.. .
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~-~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG-N  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeEEEecCCCeEEEEECCCCCEeeeec-C
Confidence            78999999999999999 5675321111110         012 33443337999998777789999 778 333222 1


Q ss_pred             CCc---cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          155 NGS---RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       155 ~~~---~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ...   .........+. ++.+|++.....+.         .....|.|+.+|.++++...
T Consensus       139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFF---------ACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CCCcCcceEecCCCEEE-CCEEEEeccccccc---------cCCCCcEEEEEECCCCceee
Confidence            111   00011122333 37788775431110         01124789999998887543

The alignment model contains an 8-bladed beta-propeller.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.71  E-value=0.0028  Score=62.03  Aligned_cols=124  Identities=16%  Similarity=0.295  Sum_probs=72.8

Q ss_pred             ccccccceeEEcCC-CcEEEEeCCcccc-cc-ccccccccccCCceEEEEeCCCC-------eEEEee------------
Q 017317          157 SRINLADDLIAATD-GSIYFSVASTKFG-LH-NWGLDLLEAKPHGKLLKYDPSLN-------ETSILL------------  214 (373)
Q Consensus       157 ~~~~~~~~l~~~~d-G~l~v~~~~~~~~-~~-~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~------------  214 (373)
                      .++..+.++.+++. |.+||+.++..-. .. ............|.||+++++..       ..+.+.            
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            46778999999985 7999997653311 00 01112223456789999998765       333321            


Q ss_pred             ------cCCCCcceEEEccCCCEEEEEeCCCCeE------------EEE--------EecCCCCcceeEEecC-CCCCCC
Q 017317          215 ------DSLFFANGVALSKDEDYLVVCETFKFRC------------LKY--------WLKGESKEQTEIFVEN-LPGGPD  267 (373)
Q Consensus       215 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i------------~~~--------~~~~~~~~~~~~~~~~-~~g~p~  267 (373)
                            ..+..|..|+|+++|+ ||+++-....-            +.+        +..+...+....|... ...-..
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t  505 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT  505 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence                  1256789999999998 88887654321            111        1122233333444321 223456


Q ss_pred             ceeECCCCC-EEEEE
Q 017317          268 NIKLAPDGS-FWIAI  281 (373)
Q Consensus       268 ~i~~d~dG~-lwva~  281 (373)
                      |+++++||+ |||..
T Consensus       506 G~~fspDg~tlFvni  520 (524)
T PF05787_consen  506 GPCFSPDGRTLFVNI  520 (524)
T ss_pred             cceECCCCCEEEEEE
Confidence            788999996 66653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.70  E-value=0.027  Score=50.00  Aligned_cols=176  Identities=15%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCC---cEEEEECCCcEEEEecCC-cEEEe
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQEN---EILVCDADKGLLKVTEEG-VTVLA  151 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g---~L~va~~~~gl~~~~~~g-~~~l~  151 (373)
                      -.++|++  |... .|+.+-.|..||...  +.-.+....+... .+.|++.-   .|.-|..++.+..++ .| .+.+.
T Consensus        46 itavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~sdDG~i~iw~-~~~W~~~~  121 (362)
T KOG0294|consen   46 ITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGSDDGHIIIWR-VGSWELLK  121 (362)
T ss_pred             eeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeecCCCcEEEEE-cCCeEEee
Confidence            3556775  3322 455788999998322  2222223345555 66666433   566665444455454 34 44332


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCE
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~  231 (373)
                      . ..+.. ..+++|++.|.|.|-++.++                 .+.+-.+|.-.|+.-.+..--..+.-+.|++.|++
T Consensus       122 s-lK~H~-~~Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~  182 (362)
T KOG0294|consen  122 S-LKAHK-GQVTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDH  182 (362)
T ss_pred             e-ecccc-cccceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCE
Confidence            2 22222 23899999999999888754                 23444455555554433333345666999999998


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      .++..  +++|..|.++..+.-.   .. ..+..+-++.++..+.+.+|...
T Consensus       183 F~v~~--~~~i~i~q~d~A~v~~---~i-~~~~r~l~~~~l~~~~L~vG~d~  228 (362)
T KOG0294|consen  183 FVVSG--RNKIDIYQLDNASVFR---EI-ENPKRILCATFLDGSELLVGGDN  228 (362)
T ss_pred             EEEEe--ccEEEEEecccHhHhh---hh-hccccceeeeecCCceEEEecCC
Confidence            87774  5677777654432211   11 12234556666777777777544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.68  E-value=0.057  Score=51.93  Aligned_cols=174  Identities=15%  Similarity=0.099  Sum_probs=94.2

Q ss_pred             EEecCCC----EEEEecC--CeEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEE-EECC--CcEEE--Ee-cC---
Q 017317           83 CVDRNGV----LYTATRD--GWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILV-CDAD--KGLLK--VT-EE---  145 (373)
Q Consensus        83 a~d~~G~----l~v~~~~--g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~v-a~~~--~gl~~--~~-~~---  145 (373)
                      .+.|||+    +|+...+  ..|+..+. .|+.+.+....+... ..++.+||+ |.+ .+..  ..++.  ++ ..   
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~  269 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI  269 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence            6667764    2354433  46888884 455555554455556 778999995 433 3221  13443  33 22   


Q ss_pred             C-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeEEEeecCCCCcc
Q 017317          146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSILLDSLFFAN  221 (373)
Q Consensus       146 g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~~~~~~~~~~  221 (373)
                      + .+.+.....    .......+.|||+ |+++...               .....||+++.+  ++..+.+........
T Consensus       270 g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~  330 (428)
T PRK01029        270 GKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS  330 (428)
T ss_pred             CcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence            3 333322111    1223568899996 6655321               112368887653  233333332223335


Q ss_pred             eEEEccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEE
Q 017317          222 GVALSKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIA  280 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva  280 (373)
                      ...|+|||+.++++...  ...|+++++.+.+.   ..+. .......+....+||+ |++.
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt-~~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLT-TSPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEcc-CCCCCccceEECCCCCEEEEE
Confidence            67899999988877543  35788888765432   2222 1123345577788886 4433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.68  E-value=0.02  Score=53.94  Aligned_cols=141  Identities=20%  Similarity=0.216  Sum_probs=80.6

Q ss_pred             EecCCCEEEEecCCeEEEEEcCCceEEeeeec----CccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCc
Q 017317           84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIG----GDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGS  157 (373)
Q Consensus        84 ~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~----~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~  157 (373)
                      ++.+|.+|+++.+|.|+.+++++-...+....    .... +-.+..+|++|+++....++.+| .+| ...... ..+.
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~-~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRN-VGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEe-cCCC
Confidence            55689999999999999999544222232111    1223 33333489999998754588999 478 443322 2221


Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----CCCCcceEEEccCCCEE
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFANGVALSKDEDYL  232 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~~~~~gi~~~~dg~~l  232 (373)
                        ....+-++-.+|.+|+.+.                  .+.++.+|.++++......     ......... ..++. +
T Consensus       143 --~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~-v  200 (370)
T COG1520         143 --PYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT-V  200 (370)
T ss_pred             --eEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecce-E
Confidence              1111224445788988842                  3789999988776543211     111112222 33443 7


Q ss_pred             EEEeCC-CCeEEEEEec
Q 017317          233 VVCETF-KFRCLKYWLK  248 (373)
Q Consensus       233 ~v~~~~-~~~i~~~~~~  248 (373)
                      |+.... +..++.++..
T Consensus       201 y~~~~~~~~~~~a~~~~  217 (370)
T COG1520         201 YVGSDGYDGILYALNAE  217 (370)
T ss_pred             EEecCCCcceEEEEEcc
Confidence            777543 3467777764

>PTZ00421 coronin; Provisional

Probab=97.60  E-value=0.084  Score=51.62  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=87.8

Q ss_pred             CcceEEEec-CCC-EEEEecCCeEEEEE-cCCc--------eEEeeeecCccccCeEECCCC-cEEE-EECCCcEEEEe-
Q 017317           78 GPEDVCVDR-NGV-LYTATRDGWIKRLH-KNGT--------WENWKLIGGDTLLGITTTQEN-EILV-CDADKGLLKVT-  143 (373)
Q Consensus        78 ~P~~ia~d~-~G~-l~v~~~~g~I~~~~-~~g~--------~~~~~~~~~~p~~gl~~d~~g-~L~v-a~~~~gl~~~~-  143 (373)
                      .-.++++.+ ++. |.+++.++.|..|+ .++.        ...+........ .+++.+++ ++++ +...+.+..+| 
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            356788888 665 55778899999888 3331        112222223345 78898875 4444 44444566677 


Q ss_pred             cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--C
Q 017317          144 EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--F  219 (373)
Q Consensus       144 ~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~  219 (373)
                      .++  ...+...     ...+.++++.++|.+.++.+.                 .+.|..+|+.+++.........  .
T Consensus       156 ~tg~~~~~l~~h-----~~~V~sla~spdG~lLatgs~-----------------Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        156 ERGKAVEVIKCH-----SDQITSLEWNLDGSLLCTTSK-----------------DKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             CCCeEEEEEcCC-----CCceEEEEEECCCCEEEEecC-----------------CCEEEEEECCCCcEEEEEecCCCCc
Confidence            555  2222111     134778999999988776543                 4788889988766433222221  2


Q ss_pred             cceEEEccCCCEEEEEeC---CCCeEEEEEec
Q 017317          220 ANGVALSKDEDYLVVCET---FKFRCLKYWLK  248 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~  248 (373)
                      ...+.+.++++.++.+..   .++.|..||+.
T Consensus       214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            235677888775554432   24567777764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.58  E-value=0.011  Score=50.67  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=88.6

Q ss_pred             ecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeeccCCccccccc
Q 017317           85 DRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLAD  163 (373)
Q Consensus        85 d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~~~~~~~~~~~  163 (373)
                      ..+..+...+.++.|..+| ..|....-......+. ++-+..+|++.....+.++..++...+..+....  .|- .++
T Consensus       153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k--~P~-nV~  228 (334)
T KOG0278|consen  153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK--MPC-NVE  228 (334)
T ss_pred             ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeecc--Ccc-ccc
Confidence            3455666667788888888 6776544444445566 9999999998766556677777733222332210  011 233


Q ss_pred             eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCc-ceEEEccCCCEEEEEeCCCCe
Q 017317          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFA-NGVALSKDEDYLVVCETFKFR  241 (373)
Q Consensus       164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~-~gi~~~~dg~~l~v~~~~~~~  241 (373)
                      +-...|+-.+||+..                 ....+++||-.++.-... ..+...| ..+.|+|||. +|.+.+.++.
T Consensus       229 SASL~P~k~~fVaGg-----------------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGT  290 (334)
T KOG0278|consen  229 SASLHPKKEFFVAGG-----------------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGT  290 (334)
T ss_pred             cccccCCCceEEecC-----------------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCce
Confidence            334567778998854                 246899999887754333 2333333 5789999998 9998877665


Q ss_pred             EEEEE
Q 017317          242 CLKYW  246 (373)
Q Consensus       242 i~~~~  246 (373)
                      |..+.
T Consensus       291 irlWQ  295 (334)
T KOG0278|consen  291 IRLWQ  295 (334)
T ss_pred             EEEEE
Confidence            55444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.55  E-value=0.027  Score=49.45  Aligned_cols=230  Identities=18%  Similarity=0.210  Sum_probs=108.7

Q ss_pred             EecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCc--EEEEECCCc-EEEEecCC-c--EEEeeccCCc
Q 017317           84 VDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENE--ILVCDADKG-LLKVTEEG-V--TVLASHVNGS  157 (373)
Q Consensus        84 ~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~--L~va~~~~g-l~~~~~~g-~--~~l~~~~~~~  157 (373)
                      .+++|..++.+.       +..|+...-...+.+.+ +|++++.-.  +.++-..+. .+.+|.++ .  ..+.. ..+.
T Consensus        43 ~~~dgs~g~a~~-------~eaGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~R  113 (366)
T COG3490          43 DARDGSFGAATL-------SEAGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGR  113 (366)
T ss_pred             eccCCceeEEEE-------ccCCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCc
Confidence            345788776542       12333322223455667 888876443  444432222 34455444 2  22221 1221


Q ss_pred             cccccceeEEcCCCcE-EEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCCcceEEEccCCCEEE
Q 017317          158 RINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDEDYLV  233 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~~gi~~~~dg~~l~  233 (373)
                        ++--.=.+.+||++ |.+...  +           ....|-|-.||.. ..+..+   ..-.-.|.-+.+.+||+.+.
T Consensus       114 --HfyGHGvfs~dG~~LYATEnd--f-----------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         114 --HFYGHGVFSPDGRLLYATEND--F-----------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             --eeecccccCCCCcEEEeecCC--C-----------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEE
Confidence              12222367899974 555322  1           1123445556644 333332   22234578899999999888


Q ss_pred             EEeCCCCeEEE--------EEecCCCCcceeEEec----------CCC-----CCCCceeECCCCCEEEEEec--CCCch
Q 017317          234 VCETFKFRCLK--------YWLKGESKEQTEIFVE----------NLP-----GGPDNIKLAPDGSFWIAILQ--LSSPG  288 (373)
Q Consensus       234 v~~~~~~~i~~--------~~~~~~~~~~~~~~~~----------~~~-----g~p~~i~~d~dG~lwva~~~--~~~~~  288 (373)
                      +++.   +|..        ++++.-  ...-++.+          .++     -....+.++.||++|.++.-  .++..
T Consensus       178 vanG---GIethpdfgR~~lNldsM--ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~  252 (366)
T COG3490         178 VANG---GIETHPDFGRTELNLDSM--EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL  252 (366)
T ss_pred             EeCC---ceecccccCccccchhhc--CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence            8754   1221        111110  00001110          111     12355789999999999853  33222


Q ss_pred             hhhccCChHH---------HHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceec
Q 017317          289 LEFVHTSKAT---------KHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMS  343 (373)
Q Consensus       289 ~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~  343 (373)
                      ..+++....-         .+....+-..+-....+...+.|..-+|.|+....+....|....
T Consensus       253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            2222211000         111111111112233355567666667899988888877776443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.51  E-value=0.00018  Score=40.04  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=24.8

Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKY  245 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  245 (373)
                      +..|.|++++++|+ +||+|+.+++|.+|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            35799999998887 99999999999876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.50  E-value=0.059  Score=48.80  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=91.1

Q ss_pred             cCccccCeEECCCCcEEEEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317          115 GGDTLLGITTTQENEILVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (373)
Q Consensus       115 ~~~p~~gl~~d~~g~L~va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~  190 (373)
                      +..|+..|.+.+||..|+....  ..+..++ ..| ...+...    ......-+.+.|||...|+..-           
T Consensus       194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt~-----------  258 (445)
T KOG2139|consen  194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAATC-----------  258 (445)
T ss_pred             CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEecc-----------
Confidence            3445558899999988876332  3577777 566 4444321    1223456789999987776532           


Q ss_pred             cccccCCceEEEEeCCC--CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCc--------ceeEEec
Q 017317          191 LLEAKPHGKLLKYDPSL--NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE--------QTEIFVE  260 (373)
Q Consensus       191 ~~~~~~~g~l~~~d~~~--~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--------~~~~~~~  260 (373)
                             .+++++=..+  ...+...-+.....+-.++|+|++|+++-.+..++++....++...        ......+
T Consensus       259 -------davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  259 -------DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             -------cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeecc
Confidence                   2344443221  2222222222255678899999999999999999998876654211        1111110


Q ss_pred             -----------CCCCCCCceeECCCCCEEEEEecCCC
Q 017317          261 -----------NLPGGPDNIKLAPDGSFWIAILQLSS  286 (373)
Q Consensus       261 -----------~~~g~p~~i~~d~dG~lwva~~~~~~  286 (373)
                                 -..|-+..++.|+.|...+.+..+.+
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                       01345667899999998888887644

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.47  E-value=0.011  Score=55.13  Aligned_cols=66  Identities=24%  Similarity=0.344  Sum_probs=43.1

Q ss_pred             CcceEEEccCC------CEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCEEEEEecC
Q 017317          219 FANGVALSKDE------DYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       219 ~~~gi~~~~dg------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      -|.|++|....      +.++|+.-..-.+.+...++......+.+.. ...++|.++++++||.|++++..+
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~  387 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG  387 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence            45677776431      2388887766667776665542222233332 234799999999999999998764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.45  E-value=0.081  Score=47.63  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=63.4

Q ss_pred             cCccccCeEECCCCcEEE--EECC-CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccc
Q 017317          115 GGDTLLGITTTQENEILV--CDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL  189 (373)
Q Consensus       115 ~~~p~~gl~~d~~g~L~v--a~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~  189 (373)
                      +.+.+ +++.++.....|  |-.. .-.+.+| .+| ........++.  ++--.-++++||++.+++.+. +       
T Consensus         4 P~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd-~-------   72 (305)
T PF07433_consen    4 PARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND-Y-------   72 (305)
T ss_pred             Ccccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc-c-------
Confidence            45677 899988554333  3222 2256777 666 33222222222  222345889999755554320 1       


Q ss_pred             ccccccCCceEEEEeCCCC--eEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          190 DLLEAKPHGKLLKYDPSLN--ETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       190 ~~~~~~~~g~l~~~d~~~~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                          ....|.|-.||...+  ++..+....-.|.-+.+.+||+.|.|++.
T Consensus        73 ----~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG  118 (305)
T PF07433_consen   73 ----ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG  118 (305)
T ss_pred             ----CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence                234577888887722  22233445556888999999998999865

>PTZ00421 coronin; Provisional

Probab=97.44  E-value=0.14  Score=50.16  Aligned_cols=113  Identities=9%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             CccccCeEECC-CCcEEE-EECCCcEEEEe-cCC-c-E----EEeeccCCccccccceeEEcCCC-cEEEEeCCcccccc
Q 017317          116 GDTLLGITTTQ-ENEILV-CDADKGLLKVT-EEG-V-T----VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLH  185 (373)
Q Consensus       116 ~~p~~gl~~d~-~g~L~v-a~~~~gl~~~~-~~g-~-~----~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~  185 (373)
                      +... ++++++ ++++++ +...+.|..++ +++ . .    .+. ...+. ...+..+++.|++ ++.++.+.      
T Consensus        76 ~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~-~L~gH-~~~V~~l~f~P~~~~iLaSgs~------  146 (493)
T PTZ00421         76 GPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIV-HLQGH-TKKVGIVSFHPSAMNVLASAGA------  146 (493)
T ss_pred             CCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceE-EecCC-CCcEEEEEeCcCCCCEEEEEeC------
Confidence            4456 889988 666544 44444455666 433 2 1    111 11221 2356788999876 56655432      


Q ss_pred             ccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       186 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                                 .+.|..+|..+++....... ......++|+++|+ ++++...++.|..||+..
T Consensus       147 -----------DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        147 -----------DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             -----------CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence                       46788888776654433332 23457899999998 556666677888888654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=97.40  E-value=0.13  Score=48.81  Aligned_cols=228  Identities=11%  Similarity=0.037  Sum_probs=112.5

Q ss_pred             EEEecCCCEEEEecCCeEEEEEcCC-ceEEeeee---cCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeeccC
Q 017317           82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN  155 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~~~  155 (373)
                      |.+. +++.|+....|.|++-...| .++.+...   +.... .+....++..|++...+.+++-+..|  .+.+.....
T Consensus       142 v~f~-~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~-~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t~  219 (398)
T PLN00033        142 ISFK-GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV-LIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEETV  219 (398)
T ss_pred             eEEE-CCEEEEEcCceEEEEEcCCCCCceECccccCCCCCce-EEEEECCCceEEEeccceEEEECCCCCCceEcccccc
Confidence            4554 46677665666666654334 34443221   22233 34443445566655433344444444  333211000


Q ss_pred             Cccc---------------cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EEEee-cCCC
Q 017317          156 GSRI---------------NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILL-DSLF  218 (373)
Q Consensus       156 ~~~~---------------~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~-~~~~  218 (373)
                      ..++               .....+...+||.+++....                  |.+++-+.++.. .+.+. ....
T Consensus       220 ~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------------------G~~~~s~d~G~~~W~~~~~~~~~  281 (398)
T PLN00033        220 SATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------------------GNFYLTWEPGQPYWQPHNRASAR  281 (398)
T ss_pred             cccccccccccccccceeccceeeEEEcCCCCEEEEECC------------------ccEEEecCCCCcceEEecCCCcc
Confidence            0000               01233556677777665432                  567765544333 23322 2222


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCc--ceeEEecC-CCCCCCceeECCCCCEEEEEecCCCchhhhccCC
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKE--QTEIFVEN-LPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTS  295 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~-~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~  295 (373)
                      .-.++.+.+++. +|++.. .+.+++-.-.+..-.  ++...... ......++.+.+++++|++...+           
T Consensus       282 ~l~~v~~~~dg~-l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-----------  348 (398)
T PLN00033        282 RIQNMGWRADGG-LWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG-----------  348 (398)
T ss_pred             ceeeeeEcCCCC-EEEEeC-CceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-----------
Confidence            346788888887 666543 344555432221110  11111101 11123446677899999998765           


Q ss_pred             hHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEe
Q 017317          296 KATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKL  368 (373)
Q Consensus       296 p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~  368 (373)
                                              .+++-...|+........++. ......+.+. +++.|+.+.++- |.|+
T Consensus       349 ------------------------~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~-il~~  396 (398)
T PLN00033        349 ------------------------ILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGV-LLRY  396 (398)
T ss_pred             ------------------------cEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcE-EEEe
Confidence                                    355555677776654322322 2234566654 589999998774 4443

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.39  E-value=0.077  Score=47.63  Aligned_cols=160  Identities=14%  Similarity=0.143  Sum_probs=84.5

Q ss_pred             cCCeEEEEE--cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-c----------EEEeec-cCCccc
Q 017317           95 RDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-V----------TVLASH-VNGSRI  159 (373)
Q Consensus        95 ~~g~I~~~~--~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~----------~~l~~~-~~~~~~  159 (373)
                      ..|+++.+-  ++|+...+.....+++ ||+.++ ++||++..+ .|+++. .+. .          ..+... ..-...
T Consensus        26 QagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGd  102 (335)
T TIGR03032        26 QAGKLFFIGLQPNGELDVFERTFPRPM-GLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGD  102 (335)
T ss_pred             ecceEEEEEeCCCCcEEEEeeccCccc-eeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccC
Confidence            445555553  4677666666678899 999864 589999864 588882 111 1          111110 000011


Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe----------ecCCCCcceEEEccCC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----------LDSLFFANGVALSKDE  229 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~----------~~~~~~~~gi~~~~dg  229 (373)
                      -.+.+|++ .++.+||.++.                 -.-|..+++. ..+...          .+.-.+-||+|+. ||
T Consensus       103 idiHdia~-~~~~l~fVNT~-----------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g  162 (335)
T TIGR03032       103 IDAHDLAL-GAGRLLFVNTL-----------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNGMALD-DG  162 (335)
T ss_pred             cchhheee-cCCcEEEEECc-----------------ceeEEEECCC-CccccccCCccccccCccCceeecceeee-CC
Confidence            23567888 57788887653                 1345556654 222221          1122345899985 56


Q ss_pred             CEEEEEeCCCC---eE---------EEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          230 DYLVVCETFKF---RC---------LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       230 ~~l~v~~~~~~---~i---------~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +--||+-.+..   .-         ..+|+...     ++..+. -.+|.+-.. .+|+||+.....
T Consensus       163 ~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-----evl~~G-LsmPhSPRW-hdgrLwvldsgt  222 (335)
T TIGR03032       163 EPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-----EVVASG-LSMPHSPRW-YQGKLWLLNSGR  222 (335)
T ss_pred             eEEEEEEeeccCCcccccccccCCeEEEEeCCC-----CEEEcC-ccCCcCCcE-eCCeEEEEECCC
Confidence            66787653321   11         11222211     222221 123444443 589999998764

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.35  E-value=0.11  Score=47.08  Aligned_cols=178  Identities=19%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             CcceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeeecC-----ccccCeEECCCCcEEEEECCCcEEEEe-cCC--cE
Q 017317           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGG-----DTLLGITTTQENEILVCDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~-----~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~  148 (373)
                      ...+|++..+.+-|+....|.|++=...| .++.......     +-. .+.++ +.+.|++.. .+++... ..|  .+
T Consensus        18 ~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~-~~~g~ivG~-~g~ll~T~DgG~tW~   94 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFD-GNEGWIVGE-PGLLLHTTDGGKTWE   94 (302)
T ss_dssp             -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEE-TTEEEEEEE-TTEEEEESSTTSS-E
T ss_pred             ceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEec-CCceEEEcC-CceEEEecCCCCCcE
Confidence            45667777667777545567776654333 2433322111     123 56665 346777643 4554444 444  44


Q ss_pred             EEee--ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEE
Q 017317          149 VLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVAL  225 (373)
Q Consensus       149 ~l~~--~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~  225 (373)
                      .+..  ..++    .+..+....++.++++..                  .|.||+=...+...+.+... ...-+.+..
T Consensus        95 ~v~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r  152 (302)
T PF14870_consen   95 RVPLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITR  152 (302)
T ss_dssp             E----TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE
T ss_pred             EeecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEE
Confidence            4421  2233    223444444566666543                  26777776554455544322 233355667


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ++||+++.|+..  +.+++-+-.|..  ..+.+......+..++.++++|+||+.+.++
T Consensus       153 ~~dG~~vavs~~--G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg  207 (302)
T PF14870_consen  153 SSDGRYVAVSSR--GNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLWMLARGG  207 (302)
T ss_dssp             -TTS-EEEEETT--SSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EEEEETTT
T ss_pred             CCCCcEEEEECc--ccEEEEecCCCc--cceEEccCccceehhceecCCCCEEEEeCCc
Confidence            899986666643  446654433321  1222221223456678899999999999776

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.31  E-value=0.03  Score=51.72  Aligned_cols=159  Identities=18%  Similarity=0.228  Sum_probs=88.3

Q ss_pred             cCCcceEEEe-cCCCEEEEecCCe------EEEEEcC---C---ceEE-----eeeecC--------ccccCeEECCCCc
Q 017317           76 LNGPEDVCVD-RNGVLYTATRDGW------IKRLHKN---G---TWEN-----WKLIGG--------DTLLGITTTQENE  129 (373)
Q Consensus        76 ~~~P~~ia~d-~~G~l~v~~~~g~------I~~~~~~---g---~~~~-----~~~~~~--------~p~~gl~~d~~g~  129 (373)
                      +.+=.+|+++ .+|.+|+-+.+|.      ++.+..+   +   .++.     +....+        .+- ||++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence            4556788998 4777776666666      6665511   1   1111     111112        345 888888999


Q ss_pred             EEEEECC-------CcEEEEecCC-c-EEEe--ecc-------CC-ccccccceeEEcCCCc-EEEEeCCcccccccccc
Q 017317          130 ILVCDAD-------KGLLKVTEEG-V-TVLA--SHV-------NG-SRINLADDLIAATDGS-IYFSVASTKFGLHNWGL  189 (373)
Q Consensus       130 L~va~~~-------~gl~~~~~~g-~-~~l~--~~~-------~~-~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~  189 (373)
                      +||++.+       ..|++++.+| . +.+.  ...       .+ .......+|++.+||+ ||+...+...+-.. ..
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-RA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-cc
Confidence            9999653       4688888557 3 3331  111       11 1334677899999997 88886542111000 00


Q ss_pred             ccccccCCceEEEEeCCCCe--EEE---eec------CCCCcceEEEccCCCEEEEEeCC
Q 017317          190 DLLEAKPHGKLLKYDPSLNE--TSI---LLD------SLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       190 ~~~~~~~~g~l~~~d~~~~~--~~~---~~~------~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .. .....-+|++||+.+..  ...   ..+      ....+..++..++++ ++|.|..
T Consensus       177 ~~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~  234 (326)
T PF13449_consen  177 NP-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD  234 (326)
T ss_pred             cc-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence            00 11112578999987522  121   122      223345567778887 8888875

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.29  E-value=0.12  Score=51.07  Aligned_cols=109  Identities=17%  Similarity=0.235  Sum_probs=61.6

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeee--c--Cc--------cccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEe
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLI--G--GD--------TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~--~--~~--------p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~  151 (373)
                      +|.||+++.++.|+.+| .+|+..-....  .  ..        .. ++++. ++++|+++....++.+| .+| ...-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            78999999889999999 56753221111  0  00        12 44453 57899988777899999 788 33221


Q ss_pred             eccCCcc--ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          152 SHVNGSR--INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       152 ~~~~~~~--~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                      . .....  ......-.+ .+|.||++..+.+++            ..|.|+.+|.++|+..
T Consensus       147 ~-~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~------------~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       147 K-NGDYKAGYTITAAPLV-VKGKVITGISGGEFG------------VRGYVTAYDAKTGKLV  194 (527)
T ss_pred             c-cccccccccccCCcEE-ECCEEEEeecccccC------------CCcEEEEEECCCCcee
Confidence            1 11110  000111122 267888876432211            2467778887777644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.27  E-value=0.044  Score=50.41  Aligned_cols=180  Identities=13%  Similarity=0.118  Sum_probs=102.4

Q ss_pred             cCCcceEEEecC--C-CEEEEecCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECCCcEEE-Ee-cCCcE
Q 017317           76 LNGPEDVCVDRN--G-VLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLK-VT-EEGVT  148 (373)
Q Consensus        76 ~~~P~~ia~d~~--G-~l~v~~~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~-~~-~~g~~  148 (373)
                      ...-.++.+.|.  + .|-.+..+|.+..++.++.  ...+.....+.. -++|+|+|+.........-++ +| .++.+
T Consensus       217 ~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~E  295 (459)
T KOG0272|consen  217 TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSE  295 (459)
T ss_pred             ccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchh
Confidence            333445555553  2 4556667787766664432  122222234556 788999998766533322333 33 34422


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~  227 (373)
                      .+..  .|. ...+.++++.+||.|..+.+-               ...|+||  |..+++...++.+ .....+++|+|
T Consensus       296 lL~Q--EGH-s~~v~~iaf~~DGSL~~tGGl---------------D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fsP  355 (459)
T KOG0272|consen  296 LLLQ--EGH-SKGVFSIAFQPDGSLAATGGL---------------DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFSP  355 (459)
T ss_pred             hHhh--ccc-ccccceeEecCCCceeeccCc---------------cchhhee--ecccCcEEEEecccccceeeEeECC
Confidence            2211  121 235789999999999887543               2346776  4456776665554 44457899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCCCCCceeECCCCCEEEEE
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      .|- .+.+.+.++.+..+|+.....    .+. ..-......+++++++..++++
T Consensus       356 NGy-~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  356 NGY-HLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             Cce-EEeecCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEE
Confidence            995 677777777777777765332    111 1111245668888744444443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.27  E-value=0.0084  Score=51.44  Aligned_cols=131  Identities=15%  Similarity=0.165  Sum_probs=76.6

Q ss_pred             CCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEE
Q 017317          125 TQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL  201 (373)
Q Consensus       125 d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~  201 (373)
                      ..|..+.-+...+.+..+| .+|  .+.+..      ...++.+.+.+||++.....+                  +.|-
T Consensus       153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia~g------------------ssV~  208 (334)
T KOG0278|consen  153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIAYG------------------SSVK  208 (334)
T ss_pred             ccCceEEeeccCCceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEecC------------------ceeE
Confidence            3454555444445677777 777  333321      124678899999987655432                  4677


Q ss_pred             EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       202 ~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      -+|+++-....-..-..+.+...++|+.. +||+......+++||.....  ....+...-+|-.-.+.+.+||.+|...
T Consensus       209 Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  209 FWDAKSFGLLKSYKMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             EeccccccceeeccCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeecc
Confidence            77775432221112223345667889985 99999888999999976431  1112211223333456777888777654


Q ss_pred             e
Q 017317          282 L  282 (373)
Q Consensus       282 ~  282 (373)
                      .
T Consensus       286 S  286 (334)
T KOG0278|consen  286 S  286 (334)
T ss_pred             C
Confidence            3

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.27  E-value=0.14  Score=51.79  Aligned_cols=150  Identities=16%  Similarity=0.185  Sum_probs=91.1

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEc--C-CceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cE-E
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK--N-GTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT-V  149 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~--~-g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~-~  149 (373)
                      .|=..|++|++|... +...+|.|.+++.  + -..+.+........ +++.+. +.+..+...+.+.++. +++ .. +
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~i   91 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYS-NHFLTGSEQNTVLRYKFPSGEEDTI   91 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeecc-cceEEeeccceEEEeeCCCCCccce
Confidence            445678999988744 5557888888872  2 12333222222334 666653 3666666666777777 666 33 3


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~d  228 (373)
                      +.. ..    ...++++++.+|...++.++                 .-.|-.++.++...+....+...| -++.++|.
T Consensus        92 L~R-ft----lp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~  149 (933)
T KOG1274|consen   92 LAR-FT----LPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK  149 (933)
T ss_pred             eee-ee----ccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence            322 11    12468899999987666443                 124556666555545555555444 57999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCC
Q 017317          229 EDYLVVCETFKFRCLKYWLKGES  251 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~  251 (373)
                      +++|-++. .++.+..|+++...
T Consensus       150 ~~fLAvss-~dG~v~iw~~~~~~  171 (933)
T KOG1274|consen  150 GNFLAVSS-CDGKVQIWDLQDGI  171 (933)
T ss_pred             CCEEEEEe-cCceEEEEEcccch
Confidence            99666665 56789999887543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.26  E-value=0.043  Score=46.62  Aligned_cols=130  Identities=16%  Similarity=0.097  Sum_probs=75.6

Q ss_pred             eEEEEE-cCCceEEeeeec-CccccCeEECCCCcEE-EEE--CCCcEEEEecCC--cEEEeeccCCccccccceeEEcCC
Q 017317           98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEIL-VCD--ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        98 ~I~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~L~-va~--~~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .|+.++ .+.....+.... +... .+++.|+|+-+ |+.  ....+..++..+  +..+    .   ....+.|.++|+
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~---~~~~n~i~wsP~  111 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----G---TQPRNTISWSPD  111 (194)
T ss_pred             EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----c---CCCceEEEECCC
Confidence            567776 333343333222 2355 99999999643 442  223455565333  2222    1   134578999999


Q ss_pred             CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC-----CCeEEEE
Q 017317          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF-----KFRCLKY  245 (373)
Q Consensus       171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~  245 (373)
                      |++.+..+.              +...|.|..+|.++.+... .........++|+|||+++..+.+.     .+++..|
T Consensus       112 G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~-~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw  176 (194)
T PF08662_consen  112 GRFLVLAGF--------------GNLNGDLEFWDVRKKKKIS-TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIW  176 (194)
T ss_pred             CCEEEEEEc--------------cCCCcEEEEEECCCCEEee-ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence            987666432              1234678889887444322 1223346789999999988877653     3455566


Q ss_pred             EecCC
Q 017317          246 WLKGE  250 (373)
Q Consensus       246 ~~~~~  250 (373)
                      +..|.
T Consensus       177 ~~~G~  181 (194)
T PF08662_consen  177 SFQGR  181 (194)
T ss_pred             EecCe
Confidence            65554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.26  E-value=0.0082  Score=55.67  Aligned_cols=184  Identities=17%  Similarity=0.174  Sum_probs=103.9

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeec
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASH  153 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~  153 (373)
                      +...+.+++... +...+|.|+.+. .++++..-....+... +++|+.+|+ ||++...+-++.+| ...  ...+.+ 
T Consensus       307 e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-  384 (514)
T KOG2055|consen  307 ERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-  384 (514)
T ss_pred             heeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-
Confidence            446666666644 444678888887 4554433333456677 899998885 66665555688888 444  333322 


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE----Ee--ecCCC-CcceEEEc
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS----IL--LDSLF-FANGVALS  226 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~----~~--~~~~~-~~~gi~~~  226 (373)
                       .|  .-.-..++...+|. |+++++                ..|-|-.||.++-...    .+  .+.+. ..+.++|.
T Consensus       385 -~G--~v~gts~~~S~ng~-ylA~GS----------------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn  444 (514)
T KOG2055|consen  385 -DG--SVHGTSLCISLNGS-YLATGS----------------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN  444 (514)
T ss_pred             -cC--ccceeeeeecCCCc-eEEecc----------------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence             11  11334678888888 666654                3466777775432111    11  11121 23578999


Q ss_pred             cCCCEEEEEeCCC-CeEEEEEecCCCCcceeEEec--CCCCCCCceeECCCC-CEEEEEecCCCc
Q 017317          227 KDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDG-SFWIAILQLSSP  287 (373)
Q Consensus       227 ~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~dG-~lwva~~~~~~~  287 (373)
                      +|.+.|-++.+.. +.+....+.  ....+..|-.  ..-+++..+++++.| .+-+++-.++..
T Consensus       445 ~d~qiLAiaS~~~knalrLVHvP--S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  445 HDAQILAIASRVKKNALRLVHVP--SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             cchhhhhhhhhccccceEEEecc--ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence            9999777766543 333333322  2222222211  223678889999955 566777666543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.24  E-value=0.038  Score=55.62  Aligned_cols=175  Identities=12%  Similarity=0.104  Sum_probs=100.4

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC-cEEEeeccCCc
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-VTVLASHVNGS  157 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g-~~~l~~~~~~~  157 (373)
                      ++.+ .+.+.+++.++.|.++. +.++...+..-..-|...++++.+|+..++.. ...|-.++ .++ .+.......+ 
T Consensus        62 ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-  139 (933)
T KOG1274|consen   62 IACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-  139 (933)
T ss_pred             Eeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-
Confidence            4443 34666888899999888 55554433222233333678888887766533 34555555 444 3333222222 


Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC---------cceEEEccC
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF---------ANGVALSKD  228 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~---------~~gi~~~~d  228 (373)
                         .+..|.++|+|++....+                 .+|.|+.+|.+++......+++..         ..-++|+|+
T Consensus       140 ---pVl~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk  199 (933)
T KOG1274|consen  140 ---PVLQLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK  199 (933)
T ss_pred             ---ceeeeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCC
Confidence               356889999998876643                 368999999887765443333221         234789999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC-CCCCCceeECCCCCEEEEE
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~dG~lwva~  281 (373)
                      +..+.+.. .++.|..|...+-... + .+.++. ...-..+..++.|.+..+.
T Consensus       200 ~g~la~~~-~d~~Vkvy~r~~we~~-f-~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  200 GGTLAVPP-VDNTVKVYSRKGWELQ-F-KLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             CCeEEeec-cCCeEEEEccCCceeh-e-eecccccccceEEEEEcCCCcEEeee
Confidence            77666665 4567888875542110 0 111111 1113346678887655443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.21  E-value=0.023  Score=52.58  Aligned_cols=111  Identities=17%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-EEe-e-c-------------CCCCcceEE
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SIL-L-D-------------SLFFANGVA  224 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~-~-~-------------~~~~~~gi~  224 (373)
                      -+.+|++.++|.+||++....           .....-.|++++.+ ++. +.+ . .             ......+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~-----------~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la  153 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGR-----------TGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA  153 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCcc-----------CCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence            456889988999999986410           00012579999987 443 222 1 1             112245899


Q ss_pred             EccCCCEEEEEeCCC---------------CeEEEEEecCCC--CcceeEEecC-----CCCCCCceeECCCCCEEEEEe
Q 017317          225 LSKDEDYLVVCETFK---------------FRCLKYWLKGES--KEQTEIFVEN-----LPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~---------------~~i~~~~~~~~~--~~~~~~~~~~-----~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +++||+.||++....               .+|.+|+...+.  ...+....+.     ....+..++.-++|+++|-.+
T Consensus       154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            999999888765432               367778765321  2222111111     112345566668889998876


Q ss_pred             c
Q 017317          283 Q  283 (373)
Q Consensus       283 ~  283 (373)
                      .
T Consensus       234 ~  234 (326)
T PF13449_consen  234 D  234 (326)
T ss_pred             c
Confidence            6

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.13  E-value=0.019  Score=53.67  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=80.4

Q ss_pred             EEEEecCC-eEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEEeeccCCccccccce
Q 017317           90 LYTATRDG-WIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADD  164 (373)
Q Consensus        90 l~v~~~~g-~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~  164 (373)
                      +.+|+.+| .+-.++. .|+.+.+....++.. .+..+++|+ +.+++....|+.++ .+| .+.+-....    ..+.+
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItd  448 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITD  448 (668)
T ss_pred             eEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEE
Confidence            33566555 5666664 345677766677888 889999997 66666555688888 788 666533222    24678


Q ss_pred             eEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       165 l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      +++.++++...-.      .+       ++-..-.|-.+|.++++.-.+-+....--.-+|+||+++||.-..
T Consensus       449 f~~~~nsr~iAYa------fP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         449 FDWHPNSRWIAYA------FP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEEcCCceeEEEe------cC-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            8888887643211      11       011123455677776665444333333345689999999998653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.12  E-value=0.22  Score=46.90  Aligned_cols=78  Identities=22%  Similarity=0.218  Sum_probs=54.3

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw  278 (373)
                      .|-.||.++++.+.+..++..-..+.+++||+.+.+++ .+..|+.++++..+..   ..-....++.-++...+++ -|
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv~---~idkS~~~lItdf~~~~ns-r~  457 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNVR---LIDKSEYGLITDFDWHPNS-RW  457 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCee---EecccccceeEEEEEcCCc-ee
Confidence            67788888899888888888889999999999777776 4668899998764322   2111233455556665554 34


Q ss_pred             EEE
Q 017317          279 IAI  281 (373)
Q Consensus       279 va~  281 (373)
                      +|-
T Consensus       458 iAY  460 (668)
T COG4946         458 IAY  460 (668)
T ss_pred             EEE
Confidence            443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.09  E-value=0.36  Score=47.97  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEeCC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      ...+.++..|||.+.++...                 .|.|-.+|...+-..+..+ .-....++.|+..|+ .+++.+.
T Consensus       351 ~~i~~l~YSpDgq~iaTG~e-----------------DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSL  412 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAE-----------------DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL  412 (893)
T ss_pred             cceeeEEECCCCcEEEeccC-----------------CCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence            45778999999999887543                 5788888887666554433 334457899999998 7777778


Q ss_pred             CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       239 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++++..+|+..  ...++.|....+..-..++.|+.|.+.++..
T Consensus       413 DGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  413 DGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             CCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            88999998753  3455666544444456789999998877743

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.07  E-value=0.18  Score=43.93  Aligned_cols=145  Identities=14%  Similarity=0.082  Sum_probs=77.2

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccC
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVN  155 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~  155 (373)
                      |--+.-|..-.+|+|+..+.+..+| ..|+..--.....+.- +-++--.+-+.++-+..+++.++ .+| .-......+
T Consensus        15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            4334444456778999999999898 5665432222223332 21211223355666667788888 777 322211111


Q ss_pred             CccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEcc-CCCEE
Q 017317          156 GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSK-DEDYL  232 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~-dg~~l  232 (373)
                      ..+   . .-..|++| -||.+..                  ++..|.+|+.+..... ..-+.....+-++++ ++ .|
T Consensus        94 ~vk---~-~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~-sl  150 (354)
T KOG4649|consen   94 TVK---V-RAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG-SL  150 (354)
T ss_pred             hhc---c-ceEEcCCCceEEEecC------------------CCcEEEecccccceEEecccCCceeccceecCCCc-eE
Confidence            111   1 12456664 6888864                  3678888887654322 111222223445666 55 49


Q ss_pred             EEEeCCCCeEEEEEec
Q 017317          233 VVCETFKFRCLKYWLK  248 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~  248 (373)
                      |++.+. +++.+...+
T Consensus       151 y~a~t~-G~vlavt~~  165 (354)
T KOG4649|consen  151 YAAITA-GAVLAVTKN  165 (354)
T ss_pred             EEEecc-ceEEEEccC
Confidence            998764 466665543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.07  E-value=0.015  Score=54.18  Aligned_cols=179  Identities=12%  Similarity=0.154  Sum_probs=107.5

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEE-ECCCcEEEEe-cCC--cEEEee
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVC-DADKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va-~~~~gl~~~~-~~g--~~~l~~  152 (373)
                      .++.+..+|.=+ .++.+..|..+| .+|+...-......|. .+.+.+++ +++++ ...+.|..+| ++|  ++.+..
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~  340 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR  340 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence            445555556555 455666677777 5676554444445566 77888888 66654 5556789999 777  333322


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-ee-cCCCCcceEEEccCCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LL-DSLFFANGVALSKDED  230 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~-~~~~~~~gi~~~~dg~  230 (373)
                           .+..+++|.+-++|+=+|+.+.               ..+-+||-++.  ..... .. .....--.++++|.++
T Consensus       341 -----hLg~i~~i~F~~~g~rFissSD---------------dks~riWe~~~--~v~ik~i~~~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  341 -----HLGAILDITFVDEGRRFISSSD---------------DKSVRIWENRI--PVPIKNIADPEMHTMPCLTLHPNGK  398 (503)
T ss_pred             -----hhhheeeeEEccCCceEeeecc---------------CccEEEEEcCC--CccchhhcchhhccCcceecCCCCC
Confidence                 2346788999999988887654               12223443332  21111 11 1122223578889988


Q ss_pred             EEEEEeCCCCeEEEEEecCC-CCcceeEEec-CCCCCCCceeECCCCCEEEEEe
Q 017317          231 YLVVCETFKFRCLKYWLKGE-SKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~  282 (373)
                       .+.+.+..+.|..|....+ +....+.|.. ...|++-.+.+++||.+.+...
T Consensus       399 -~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd  451 (503)
T KOG0282|consen  399 -WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD  451 (503)
T ss_pred             -eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence             7778888899998875432 2222223322 2467888899999998766644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.05  E-value=0.53  Score=49.21  Aligned_cols=147  Identities=12%  Similarity=0.043  Sum_probs=84.2

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEcC-----CceE----EeeeecCccccCeEECCC-Cc-EEEEECCCcEEEEe-cC
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-----GTWE----NWKLIGGDTLLGITTTQE-NE-ILVCDADKGLLKVT-EE  145 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~-----g~~~----~~~~~~~~p~~gl~~d~~-g~-L~va~~~~gl~~~~-~~  145 (373)
                      -.+++++++|.+. ++..++.|..++..     +...    .......... ++++.+. +. |..+...+.+..+| .+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            4558889988866 66788999888732     1110    0011122334 7777653 44 44444444455566 55


Q ss_pred             C--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcce
Q 017317          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG  222 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~g  222 (373)
                      +  ...+..     ....+.++++.+ +|.++++.+.                 .+.|..+|..+++.............
T Consensus       565 ~~~~~~~~~-----H~~~V~~l~~~p~~~~~L~Sgs~-----------------Dg~v~iWd~~~~~~~~~~~~~~~v~~  622 (793)
T PLN00181        565 SQLVTEMKE-----HEKRVWSIDYSSADPTLLASGSD-----------------DGSVKLWSINQGVSIGTIKTKANICC  622 (793)
T ss_pred             CeEEEEecC-----CCCCEEEEEEcCCCCCEEEEEcC-----------------CCEEEEEECCCCcEEEEEecCCCeEE
Confidence            5  222211     113577899986 6777776543                 46777788765554332222233455


Q ss_pred             EEEc-cCCCEEEEEeCCCCeEEEEEecC
Q 017317          223 VALS-KDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       223 i~~~-~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +.+. +++. .+++...++.|..|++..
T Consensus       623 v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        623 VQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            6674 4566 555556677899998754

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.05  E-value=0.066  Score=51.56  Aligned_cols=126  Identities=9%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             ccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCC-------eEEEee--------cC----
Q 017317          157 SRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-------ETSILL--------DS----  216 (373)
Q Consensus       157 ~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~--------~~----  216 (373)
                      .++..+.++++.+. |.+|++.....-. ........+....|.|+||-+.++       +++.+.        ..    
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~  492 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA  492 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence            46667889999875 6899997653222 111122233445688999988765       344332        11    


Q ss_pred             ------CCCcceEEEccCCCEEEEEeCCCC--------eEEEEEecCCCCcceeEEecCCC-CCCCceeECCCC-CEEEE
Q 017317          217 ------LFFANGVALSKDEDYLVVCETFKF--------RCLKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDG-SFWIA  280 (373)
Q Consensus       217 ------~~~~~gi~~~~dg~~l~v~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~dG-~lwva  280 (373)
                            +..|.+++|++.|+ ||+++.+..        ++......+++.++...|..... .-..|.++.+|| .++|+
T Consensus       493 ~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         493 NINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             CcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence                  34589999999998 898876543        23333344556667666654322 234568899999 58888


Q ss_pred             EecC
Q 017317          281 ILQL  284 (373)
Q Consensus       281 ~~~~  284 (373)
                      .-..
T Consensus       572 vQHP  575 (616)
T COG3211         572 VQHP  575 (616)
T ss_pred             ecCC
Confidence            7543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.03  E-value=0.024  Score=52.34  Aligned_cols=143  Identities=14%  Similarity=0.127  Sum_probs=87.2

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCC-ceEEeeeecCccccCeEECCCCcEEEEECCCc-EEEEe-c-CC-cEEEe
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-E-EG-VTVLA  151 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~-~-~g-~~~l~  151 (373)
                      -.+.++.|||.|+ .|+.+|-|-.|+ ..+ ....|....+... .|.|..+|...+.....+ +..+| + .. ++.+.
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            3567888999999 677888777777 333 2333433223334 899988886554433444 88888 3 23 33332


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec---CCCCcceEEEccC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFANGVALSKD  228 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~~gi~~~~d  228 (373)
                      .    ..+..++++.+|..|...+..++                 .-.||.++..+++++.+..   .....+|+.|...
T Consensus       429 l----~~~~~v~s~~fD~SGt~L~~~g~-----------------~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 L----DEKKEVNSLSFDQSGTYLGIAGS-----------------DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             c----cccccceeEEEcCCCCeEEeecc-----------------eeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence            1    11235789999999976554332                 2478888877777665432   1224577777765


Q ss_pred             CCEEEEEeCCCCeEEEE
Q 017317          229 EDYLVVCETFKFRCLKY  245 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~  245 (373)
                      .  .|++.++..++.++
T Consensus       488 a--q~l~s~smd~~l~~  502 (506)
T KOG0289|consen  488 A--QYLASTSMDAILRL  502 (506)
T ss_pred             c--eEEeeccchhheEE
Confidence            4  45555566666543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.03  E-value=0.21  Score=44.09  Aligned_cols=189  Identities=12%  Similarity=0.108  Sum_probs=109.9

Q ss_pred             EeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE--cCCceEEeeeecCccccCeEECCCCcEEEEECCC---cEEEEe
Q 017317           70 RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH--KNGTWENWKLIGGDTLLGITTTQENEILVCDADK---GLLKVT  143 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~--~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~---gl~~~~  143 (373)
                      +...|.+..-.++-..+|.+.. .++.+|+++.+|  ...+...+.......+ .-++.|.|++..+..-.   .||.+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence            4455666666777777766655 677899999999  3345555544455566 77888999987763322   244444


Q ss_pred             -c--CCcEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCC
Q 017317          144 -E--EGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFF  219 (373)
Q Consensus       144 -~--~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~  219 (373)
                       +  +|...+.....|.. .+.....+-.|+.|.-+.+                  ......+|.++++......+ ...
T Consensus       128 ~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~SG------------------D~TCalWDie~g~~~~~f~GH~gD  188 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTGSG------------------DMTCALWDIETGQQTQVFHGHTGD  188 (343)
T ss_pred             cccccccceeeeeecCcc-ceeEEEEEcCCCceEecCC------------------CceEEEEEcccceEEEEecCCccc
Confidence             3  33222222233321 2455556656777765432                  24566677777765544433 333


Q ss_pred             cceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          220 ANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       220 ~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      .-++.++| +++ .|++..-......+|+....  -.+.|... ..-.+.+++-++|.-+++..
T Consensus       189 V~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~--c~qtF~gh-esDINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  189 VMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQ--CVQTFEGH-ESDINSVRFFPSGDAFATGS  248 (343)
T ss_pred             EEEEecCCCCCC-eEEecccccceeeeeccCcc--eeEeeccc-ccccceEEEccCCCeeeecC
Confidence            45788888 777 78876655556666665432  22333321 22355677777776666544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.00  E-value=0.32  Score=45.81  Aligned_cols=107  Identities=16%  Similarity=0.239  Sum_probs=64.3

Q ss_pred             CCCEEEEecCCeEEEEEc-CCceEEeeeecC--ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccc
Q 017317           87 NGVLYTATRDGWIKRLHK-NGTWENWKLIGG--DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINL  161 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~--~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~  161 (373)
                      +|+||+++.+|.++.++. +|+..-.....+  .-. +-.+-.++.+|+.+....++.++ .+| .........+.....
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            899999999999999996 787654433333  122 33344678888885446688998 567 433222111011111


Q ss_pred             cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                      ..... ..+|.+|++...               - .+.++.+|+.+++..
T Consensus       190 ~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~~  222 (370)
T COG1520         190 YGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTLK  222 (370)
T ss_pred             ccCce-eecceEEEecCC---------------C-cceEEEEEccCCcEe
Confidence            22222 557889988541               0 246888888767644

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.00  E-value=0.11  Score=44.02  Aligned_cols=128  Identities=13%  Similarity=0.090  Sum_probs=73.6

Q ss_pred             CCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEE
Q 017317          126 QENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLK  202 (373)
Q Consensus       126 ~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~  202 (373)
                      ..+.-|.+.  ..+++++ .+. ...+.....    ..+.+++..|+|+ +.+..+.                ....+..
T Consensus        30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~----------------~~~~v~l   87 (194)
T PF08662_consen   30 KSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTL   87 (194)
T ss_pred             cCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEcc----------------CCcccEE
Confidence            444444443  2477776 333 443322211    1378999999995 4444321                1236777


Q ss_pred             EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317          203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       203 ~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva  280 (373)
                      ||.+...+..+.  -...|.+.|+|+|+++.++..++  +.+..||....     +............++.++||++.++
T Consensus        88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence            777644443332  23457899999999888876543  45777776521     1222122223556788999998777


Q ss_pred             Ee
Q 017317          281 IL  282 (373)
Q Consensus       281 ~~  282 (373)
                      ..
T Consensus       161 a~  162 (194)
T PF08662_consen  161 AT  162 (194)
T ss_pred             EE
Confidence            54

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=97.00  E-value=0.047  Score=49.74  Aligned_cols=189  Identities=16%  Similarity=0.144  Sum_probs=108.0

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEe-eeecCccccCeE-----------ECC-------
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENW-KLIGGDTLLGIT-----------TTQ-------  126 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~-~~~~~~p~~gl~-----------~d~-------  126 (373)
                      +......|-...-.++-..-+|.||.|+.++.|..++ .+|..-.. .......+ .|+           |++       
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~  316 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKS  316 (480)
T ss_pred             eEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCC
Confidence            3444445555556677777789999999999998887 45532111 00000011 111           111       


Q ss_pred             ------------------CC-cEEEEECCCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccc
Q 017317          127 ------------------EN-EILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHN  186 (373)
Q Consensus       127 ------------------~g-~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~  186 (373)
                                        .| +|.-+..+..++.+++.. .+.+. ...| ....+|.+.+.|||+...+.+-       
T Consensus       317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~-rmtg-Hq~lVn~V~fSPd~r~IASaSF-------  387 (480)
T KOG0271|consen  317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT-RMTG-HQALVNHVSFSPDGRYIASASF-------  387 (480)
T ss_pred             hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh-hhhc-hhhheeeEEECCCccEEEEeec-------
Confidence                              12 233343334566665322 22211 1111 2346889999999987666442       


Q ss_pred             cccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC
Q 017317          187 WGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG  265 (373)
Q Consensus       187 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~  265 (373)
                                ...|-.+|..+|++-..+.+ .....-++++.|.+ |+|+.+.+..+..+++..++      ....+||.
T Consensus       388 ----------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh  450 (480)
T KOG0271|consen  388 ----------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGH  450 (480)
T ss_pred             ----------ccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCC
Confidence                      23455667777765433332 23345689999987 99999888889888876543      23367776


Q ss_pred             CCce-eE--CCCCCEEEEEe
Q 017317          266 PDNI-KL--APDGSFWIAIL  282 (373)
Q Consensus       266 p~~i-~~--d~dG~lwva~~  282 (373)
                      .|.+ ++  .+||..-++..
T Consensus       451 ~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  451 ADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             CceEEEEEecCCCceeecCC
Confidence            6664 33  47887666543

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.98  E-value=0.0036  Score=38.49  Aligned_cols=38  Identities=24%  Similarity=0.005  Sum_probs=33.3

Q ss_pred             eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          213 LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       213 ~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      +..++..|+|+++++.++.+||++.....|.+++++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            34567889999999999999999999999999988764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.98  E-value=0.019  Score=56.24  Aligned_cols=78  Identities=21%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             ccccccceeEEcCCCcEEEEeCCcccccc-----ccc--cccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEcc
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLH-----NWG--LDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSK  227 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~-----~~~--~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~  227 (373)
                      ..+..|..|+++++|+|||.+........     ...  ..+....... ++..++.+++...++..  .....|++|+|
T Consensus       433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp  511 (524)
T PF05787_consen  433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP  511 (524)
T ss_pred             CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence            34567888999999999998643211100     000  0000001111 55566777776665543  34457999999


Q ss_pred             CCCEEEEE
Q 017317          228 DEDYLVVC  235 (373)
Q Consensus       228 dg~~l~v~  235 (373)
                      |+++||+.
T Consensus       512 Dg~tlFvn  519 (524)
T PF05787_consen  512 DGRTLFVN  519 (524)
T ss_pred             CCCEEEEE
Confidence            99988885

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.97  E-value=0.28  Score=44.56  Aligned_cols=220  Identities=15%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             EEEecCCCEEEEecCCeEEEEEcCC-ceEEeee---ecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeeccC
Q 017317           82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASHVN  155 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~~~  155 (373)
                      |.++ +...|+....|.|++-...| .++.+..   .++.+. ++....++..+++.....|++-...|  .+.+.....
T Consensus        67 I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~  144 (302)
T PF14870_consen   67 ISFD-GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETS  144 (302)
T ss_dssp             EEEE-TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--
T ss_pred             EEec-CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCc
Confidence            4443 45677655566666554334 4555432   245666 66655566777766555566655444  454433222


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEE-EeCCCCeEEEeec-CCCCcceEEEccCCCEEE
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK-YDPSLNETSILLD-SLFFANGVALSKDEDYLV  233 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~-~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~  233 (373)
                          ...+++...+||++.....                  .|.+|. .|+.....+.... ....-..+.|++++. ||
T Consensus       145 ----gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw  201 (302)
T PF14870_consen  145 ----GSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LW  201 (302)
T ss_dssp             ------EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EE
T ss_pred             ----ceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EE
Confidence                2456777888888554433                  255653 4543222343322 233456788999987 88


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeEEecC-CC----CC-CCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          234 VCETFKFRCLKYWLKGESKEQTEIFVEN-LP----GG-PDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~----g~-p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      +... ...|..=+ ..   ...+.+... .+    ++ .-.++..+++.+|++...+                       
T Consensus       202 ~~~~-Gg~~~~s~-~~---~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-----------------------  253 (302)
T PF14870_consen  202 MLAR-GGQIQFSD-DP---DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-----------------------  253 (302)
T ss_dssp             EEET-TTEEEEEE--T---TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----------------------
T ss_pred             EEeC-CcEEEEcc-CC---CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-----------------------
Confidence            8763 33444433 11   112222211 11    11 1235778889999998765                       


Q ss_pred             hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEEe
Q 017317          308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGKL  368 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~~  368 (373)
                                  .+++=...|+..+.....+... .....+.+ .+++-|+-..++- |.|+
T Consensus       254 ------------~l~~S~DgGktW~~~~~~~~~~-~n~~~i~f~~~~~gf~lG~~G~-ll~~  301 (302)
T PF14870_consen  254 ------------TLLVSTDGGKTWQKDRVGENVP-SNLYRIVFVNPDKGFVLGQDGV-LLRY  301 (302)
T ss_dssp             -------------EEEESSTTSS-EE-GGGTTSS-S---EEEEEETTEEEEE-STTE-EEEE
T ss_pred             ------------cEEEeCCCCccceECccccCCC-CceEEEEEcCCCceEEECCCcE-EEEe
Confidence                        2444445677776554322222 23445554 4567776665553 4443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=96.96  E-value=0.4  Score=46.18  Aligned_cols=157  Identities=11%  Similarity=0.065  Sum_probs=77.6

Q ss_pred             eEEEEEcCCc-eEEeeeecCccccCeEECCCCc----EEEEECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEc
Q 017317           98 WIKRLHKNGT-WENWKLIGGDTLLGITTTQENE----ILVCDAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAA  168 (373)
Q Consensus        98 ~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~----L~va~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~  168 (373)
                      .|+..+.+|. ...+........ .-++.+||+    +|+....  ..|+.++ .+| .+.+.. ..+.    .....+.
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~----~~~p~wS  239 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGN----QLMPTFS  239 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCC----ccceEEC
Confidence            5556665543 222222122223 567889985    2344322  3478887 556 555543 2221    2245889


Q ss_pred             CCC-cEEEEeCCccccccccccccccccCCceEEE--EeCCC---CeEEEeecC-CCCcceEEEccCCCEEEEEeC--CC
Q 017317          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK--YDPSL---NETSILLDS-LFFANGVALSKDEDYLVVCET--FK  239 (373)
Q Consensus       169 ~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~~---~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~--~~  239 (373)
                      ||| .|.++...  .             +...+|.  ++.++   ++.+.+... .......+|+|||+.|+++..  +.
T Consensus       240 PDG~~Laf~s~~--~-------------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~  304 (428)
T PRK01029        240 PRKKLLAFISDR--Y-------------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR  304 (428)
T ss_pred             CCCCEEEEEECC--C-------------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC
Confidence            999 56554321  0             1112333  34332   233333322 223345799999998777653  23


Q ss_pred             CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                      ..|+++++++.. +....+. ...+.......++||+.
T Consensus       305 ~~ly~~~~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        305 PRIYIMQIDPEG-QSPRLLT-KKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             ceEEEEECcccc-cceEEec-cCCCCccceeECCCCCE
Confidence            467777764321 1122222 11223345677888873

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.94  E-value=0.23  Score=43.19  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             CCCEEEEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCCcEEEeeccCCcccccc
Q 017317           87 NGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEGVTVLASHVNGSRINLA  162 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g~~~l~~~~~~~~~~~~  162 (373)
                      ++.+.+|..+|.++.++ .+|. .-.+.. .+...+.-..|.++ -+|.++.++.++.+| .+---+...+-.|.-+..|
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            34566888999999988 6663 222211 11111022344444 578887777788888 3212233334444333333


Q ss_pred             ceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          163 DDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       163 ~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                         ++++ +|.||++...                  |.|+++++++.....
T Consensus       142 ---~i~~g~~sly~a~t~------------------G~vlavt~~~~~~~~  171 (354)
T KOG4649|consen  142 ---VIAPGDGSLYAAITA------------------GAVLAVTKNPYSSTE  171 (354)
T ss_pred             ---eecCCCceEEEEecc------------------ceEEEEccCCCCcce
Confidence               6666 8899999764                  889999887765444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.33  Score=43.16  Aligned_cols=192  Identities=14%  Similarity=0.150  Sum_probs=104.7

Q ss_pred             cccCeEECCCCc-EEEEE-CCCcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccc
Q 017317          118 TLLGITTTQENE-ILVCD-ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       118 p~~gl~~d~~g~-L~va~-~~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~  193 (373)
                      .. +|.++++.+ ||... ....++.++.+|  ++.+.-    ..++-+.+|+.-.+|.+-+++..              
T Consensus        88 vS-~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----~g~~DpE~Ieyig~n~fvi~dER--------------  148 (316)
T COG3204          88 VS-SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----TGFSDPETIEYIGGNQFVIVDER--------------  148 (316)
T ss_pred             cc-ceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----cccCChhHeEEecCCEEEEEehh--------------
Confidence            45 899998775 66543 334578888666  443321    12445667777766777676642              


Q ss_pred             ccCCceEEEEeCCCCeEE-----Eeec----CCCCcceEEEccCCCEEEEEeCCC-CeEEEEEecCCCCcc---------
Q 017317          194 AKPHGKLLKYDPSLNETS-----ILLD----SLFFANGVALSKDEDYLVVCETFK-FRCLKYWLKGESKEQ---------  254 (373)
Q Consensus       194 ~~~~g~l~~~d~~~~~~~-----~~~~----~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~---------  254 (373)
                       ...-.++++|+++....     .-++    ....-.|++++++...+|++-..+ -+|+.+.........         
T Consensus       149 -~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         149 -DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             -cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence             12223455666533211     1111    123346999999999899887533 345555422111000         


Q ss_pred             eeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEE
Q 017317          255 TEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRK  333 (373)
Q Consensus       255 ~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~  333 (373)
                      ...+..    -..++.+|+ .|+++|-....                                  ..+++++.+|+++..
T Consensus       228 ~~~f~~----DvSgl~~~~~~~~LLVLS~ES----------------------------------r~l~Evd~~G~~~~~  269 (316)
T COG3204         228 RDLFVL----DVSGLEFNAITNSLLVLSDES----------------------------------RRLLEVDLSGEVIEL  269 (316)
T ss_pred             cceEee----ccccceecCCCCcEEEEecCC----------------------------------ceEEEEecCCCeeee
Confidence            001111    123455554 45666665544                                  368999999998776


Q ss_pred             EeCCCC---ce--ecceeEEEEe-CCEEEEeeCCCCeEEEe
Q 017317          334 FEDPNG---KV--MSFVTSALEF-DDHLYLGSLNTNFIGKL  368 (373)
Q Consensus       334 ~~~~~g---~~--~~~~~~~~~~-~g~L~vgs~~~~~i~~~  368 (373)
                      +.-..|   ..  .....++.-+ +|.||+-+- .|-.+++
T Consensus       270 lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE-Pnlfy~F  309 (316)
T COG3204         270 LSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE-PNLFYRF  309 (316)
T ss_pred             EEeccCCCCCcccCCCcceeEECCCCCEEEEec-CCcceec
Confidence            644333   21  2234455544 589999984 4444444

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.80  E-value=0.16  Score=50.27  Aligned_cols=141  Identities=13%  Similarity=0.191  Sum_probs=79.9

Q ss_pred             ccccCeEECCCCcEEEEECCCcEEEEe--cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccc
Q 017317          117 DTLLGITTTQENEILVCDADKGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       117 ~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~  193 (373)
                      .|+.|..+.|+.++.+.....+-.|+-  .+- ..+...   | ....+.++.|.|.|..+.+. +              
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~---G-H~~PVwdV~F~P~GyYFata-s--------------  512 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK---G-HLAPVWDVQFAPRGYYFATA-S--------------  512 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEec---C-CCcceeeEEecCCceEEEec-C--------------
Confidence            344488899998877765443333332  221 111111   2 12245678899887655554 3              


Q ss_pred             ccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317          194 AKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (373)
Q Consensus       194 ~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  273 (373)
                      +..+.+||-.|.. .-.+.++..+..-..+.|+|... ...+.+....+..+|+...  ...+.|.. -.+-...+++.+
T Consensus       513 ~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G--~~VRiF~G-H~~~V~al~~Sp  587 (707)
T KOG0263|consen  513 HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG--NSVRIFTG-HKGPVTALAFSP  587 (707)
T ss_pred             CCceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC--cEEEEecC-CCCceEEEEEcC
Confidence            2456788888753 33445556666667799999886 3333344444555554322  23555543 223456688999


Q ss_pred             CCCEEEEE
Q 017317          274 DGSFWIAI  281 (373)
Q Consensus       274 dG~lwva~  281 (373)
                      +|++.+..
T Consensus       588 ~Gr~LaSg  595 (707)
T KOG0263|consen  588 CGRYLASG  595 (707)
T ss_pred             CCceEeec
Confidence            98665553

>PTZ00420 coronin; Provisional

Probab=96.80  E-value=0.18  Score=50.03  Aligned_cols=159  Identities=7%  Similarity=-0.039  Sum_probs=82.9

Q ss_pred             CcceEEEecCCCE-E-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--cEEE
Q 017317           78 GPEDVCVDRNGVL-Y-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l-~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--~~~l  150 (373)
                      .-.++++.|++.. . +++.++.|..+| ..++............ +++++++|.++++.. .+.+..+| .++  ...+
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            3467888887653 3 456789999998 4444222112234456 899999999887654 34466777 566  2222


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeecCCCCcce--EEEcc
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANG--VALSK  227 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~~g--i~~~~  227 (373)
                      ..+.............+.+++..+++.+..             ......|..+|..+ ++.......-..+..  ..+++
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------------~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~  272 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------------KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE  272 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcC-------------CCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC
Confidence            211111000001111234677766665431             00112466677552 221111111111222  23455


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCC
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      +...+|++..+++.|+.|++..+
T Consensus       273 ~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        273 STGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCCCEEEEEECCCeEEEEEccCC
Confidence            54458888888888888887543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.79  E-value=0.099  Score=52.25  Aligned_cols=149  Identities=19%  Similarity=0.255  Sum_probs=94.8

Q ss_pred             cceEEEecCCC-EEEEecCCeEEEEE-cCCce-EEee---eecCccccCeEECCCCcEEEEECCCcEEEEe--cCCc--E
Q 017317           79 PEDVCVDRNGV-LYTATRDGWIKRLH-KNGTW-ENWK---LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEGV--T  148 (373)
Q Consensus        79 P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~-~~~~---~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g~--~  148 (373)
                      -.+++++.-|+ .++|.+.|.|-+++ +.|-. ..+.   ...+... |++.|.-+++.|+....|++.+.  ..+.  .
T Consensus       451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            45677887565 45899999999999 55632 2231   1223345 99999888888876667776654  2221  0


Q ss_pred             EE----------ee---------------------------ccCCccccccceeEEcCCCcEEEEeCCcccccccccccc
Q 017317          149 VL----------AS---------------------------HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL  191 (373)
Q Consensus       149 ~l----------~~---------------------------~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~  191 (373)
                      .+          ..                           ...| -.+.++++++.+||+=.++.+             
T Consensus       530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisas-------------  595 (910)
T KOG1539|consen  530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISAS-------------  595 (910)
T ss_pred             eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEee-------------
Confidence            00          00                           0011 124678899999997444432             


Q ss_pred             ccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317          192 LEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       192 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  246 (373)
                          ..+.|..+|.-++.......--..+..+.++|.|++|..+....++|+.+-
T Consensus       596 ----mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  596 ----MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ----cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence                136777788766654332222334578999999999999998888898774

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.79  E-value=0.47  Score=44.56  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l  150 (373)
                      .-.+++...+|.+. +|..+|.+..++.+|...........|...|.+.++|+..+ +...+.++.+| .+| ....
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            34568888889888 67889988888888864433322334443899998887544 45556678888 667 4433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=96.78  E-value=0.059  Score=50.82  Aligned_cols=107  Identities=18%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             cccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeEEE-eecCCCCcceEEEccCCCEEEEE
Q 017317          160 NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNETSI-LLDSLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       160 ~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~  235 (373)
                      +++......+||+ |.++..                  ...|-.+|..  +.++.. +-........+++++|.+ +.++
T Consensus       466 nyiRSckL~pdgrtLivGGe------------------astlsiWDLAapTprikaeltssapaCyALa~spDak-vcFs  526 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGE------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFS  526 (705)
T ss_pred             cceeeeEecCCCceEEeccc------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeee
Confidence            5666777788995 544421                  1234444433  222221 111123345788999998 7777


Q ss_pred             eCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCC-CEEEEEecCCCchhhh
Q 017317          236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDG-SFWIAILQLSSPGLEF  291 (373)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG-~lwva~~~~~~~~~~~  291 (373)
                      ....+.|..||+..+.      ....+.|++||   |.+..|| +||.+..+.....||.
T Consensus       527 ccsdGnI~vwDLhnq~------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  527 CCSDGNIAVWDLHNQT------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             eccCCcEEEEEcccce------eeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            7777789999976542      22245677777   5677889 6999876654445554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.75  E-value=0.047  Score=51.08  Aligned_cols=145  Identities=12%  Similarity=0.038  Sum_probs=89.8

Q ss_pred             cceEEEec-CCCEE-EEecCCeEEEEE--cCCc-eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cEEE
Q 017317           79 PEDVCVDR-NGVLY-TATRDGWIKRLH--KNGT-WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        79 P~~ia~d~-~G~l~-v~~~~g~I~~~~--~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~~l  150 (373)
                      -.++.+-+ .+.|+ .+..++.|..++  .+++ +++|.. ...|+..+++..+|.-+.+ ....-+-.+| ++| ...-
T Consensus       217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~  295 (503)
T KOG0282|consen  217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR  295 (503)
T ss_pred             cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeecceeeeeeccccceEEEE
Confidence            34444444 67777 455788888887  3343 334332 2334338888888965544 4444455566 778 3322


Q ss_pred             eeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccC
Q 017317          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKD  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~d  228 (373)
                      ...     ...+..+.+.||+ +++++.++                 +++|..+|..++++. .+...+...+.|.|-++
T Consensus       296 f~~-----~~~~~cvkf~pd~~n~fl~G~s-----------------d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~  353 (503)
T KOG0282|consen  296 FHL-----DKVPTCVKFHPDNQNIFLVGGS-----------------DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE  353 (503)
T ss_pred             Eec-----CCCceeeecCCCCCcEEEEecC-----------------CCcEEEEeccchHHHHHHHhhhhheeeeEEccC
Confidence            111     1346788889988 78877554                 589999998877632 23445667788999998


Q ss_pred             CCEEEEEeCCCCeEEEEEe
Q 017317          229 EDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~  247 (373)
                      |+ -+++.+....+..++.
T Consensus       354 g~-rFissSDdks~riWe~  371 (503)
T KOG0282|consen  354 GR-RFISSSDDKSVRIWEN  371 (503)
T ss_pred             Cc-eEeeeccCccEEEEEc
Confidence            87 5666555555555543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.71  E-value=0.29  Score=47.91  Aligned_cols=157  Identities=17%  Similarity=0.178  Sum_probs=88.4

Q ss_pred             CCcceEEEecCCCEE-EEe-cCCeEEEEEcCCceEE--eeeec--CccccCeEECCCCc-EEEEE-CCCcEEEEe-cCC-
Q 017317           77 NGPEDVCVDRNGVLY-TAT-RDGWIKRLHKNGTWEN--WKLIG--GDTLLGITTTQENE-ILVCD-ADKGLLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~-~~g~I~~~~~~g~~~~--~~~~~--~~p~~gl~~d~~g~-L~va~-~~~gl~~~~-~~g-  146 (373)
                      ..-.+-++.|+|++. +++ ..=+|+++.+++.+..  ....+  ..+.+.+.+..|++ ++++. ....+..++ ... 
T Consensus       383 ~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps  462 (691)
T KOG2048|consen  383 ENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS  462 (691)
T ss_pred             cceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence            334455677889887 555 5668888886654332  21111  11221444444443 44443 223455555 333 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~  225 (373)
                      .+.+...........+..|++.++|+-..+-+                 ..|.|+.|+.++++...+...+..+ ...++
T Consensus       463 ~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~  525 (691)
T KOG2048|consen  463 FKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAF  525 (691)
T ss_pred             hhhhhccccccCCCcceeEEEcCCCCEEEEEe-----------------ccceEEEEEcccceeecchhccCcceeeeec
Confidence            33332222223345677899999996443322                 2478999999988877665444432 45566


Q ss_pred             cc-CCCEEEEEeCCCCeEEEEEecCCC
Q 017317          226 SK-DEDYLVVCETFKFRCLKYWLKGES  251 (373)
Q Consensus       226 ~~-dg~~l~v~~~~~~~i~~~~~~~~~  251 (373)
                      .| +.+.+.++ +.++.++.|++...+
T Consensus       526 ~~~~~~~lvva-ts~nQv~efdi~~~~  551 (691)
T KOG2048|consen  526 SPFVRNRLVVA-TSNNQVFEFDIEARN  551 (691)
T ss_pred             cccccCcEEEE-ecCCeEEEEecchhh
Confidence            64 44445555 457899999985443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.70  E-value=0.46  Score=43.18  Aligned_cols=155  Identities=15%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             EeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeee-ecCccccCeEECCCC-cEEEEECCCcEEEEe-c
Q 017317           70 RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQEN-EILVCDADKGLLKVT-E  144 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~  144 (373)
                      ++..|-+.--+++++||.+.-+ .|+.++.|-.+| ..|+...... .....- ++++.+.- .||-|..++-+-.+| +
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEech
Confidence            3444556667899999865544 455777777777 6776543222 123345 77776433 456555445566677 4


Q ss_pred             CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc-
Q 017317          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN-  221 (373)
Q Consensus       145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~-  221 (373)
                      ..  ++.+...     +..+..++..|.-.+.++.+.               ....+||  |..++.......+...|. 
T Consensus       224 ~nkvIR~YhGH-----lS~V~~L~lhPTldvl~t~gr---------------Dst~RvW--DiRtr~~V~~l~GH~~~V~  281 (460)
T KOG0285|consen  224 YNKVIRHYHGH-----LSGVYCLDLHPTLDVLVTGGR---------------DSTIRVW--DIRTRASVHVLSGHTNPVA  281 (460)
T ss_pred             hhhhHHHhccc-----cceeEEEeccccceeEEecCC---------------cceEEEe--eecccceEEEecCCCCcce
Confidence            33  3333222     335677888887777777543               1223444  444444333444444443 


Q ss_pred             eEEEcc-CCCEEEEEeCCCCeEEEEEecC
Q 017317          222 GVALSK-DEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       222 gi~~~~-dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      .+.+-+ |.+  +++.+.+..|..+|+..
T Consensus       282 ~V~~~~~dpq--vit~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  282 SVMCQPTDPQ--VITGSHDSTVRLWDLRA  308 (460)
T ss_pred             eEEeecCCCc--eEEecCCceEEEeeecc
Confidence            333332 443  44445566777777643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.69  E-value=0.061  Score=53.44  Aligned_cols=151  Identities=9%  Similarity=0.089  Sum_probs=93.9

Q ss_pred             cceEEEec-CCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCCcEEE---
Q 017317           79 PEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEGVTVL---  150 (373)
Q Consensus        79 P~~ia~d~-~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g~~~l---  150 (373)
                      -.+|++.| |.+.+ .|+-+|+|..|+ ++-++..+.+...... ++++.|||+.- |++. .|..++. ..|.+..   
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEe-ccEEEEEEccCCeEEEee
Confidence            35588888 55555 678899998888 6666766666555666 99999999754 5554 6666665 4442111   


Q ss_pred             --ee-ccCCccccccceeEEcCCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ce
Q 017317          151 --AS-HVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NG  222 (373)
Q Consensus       151 --~~-~~~~~~~~~~~~l~~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~g  222 (373)
                        .. .........+.++-+.|..  .+.|+...                  .+|-.||..+.+......+..+.   ..
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnD------------------SrIRI~d~~~~~lv~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSND------------------SRIRIYDGRDKDLVHKFKGFRNTSSQIS  551 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEecCC------------------CceEEEeccchhhhhhhcccccCCccee
Confidence              11 1111122356677666432  58887543                  57888887544443334444433   34


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      -.|+.||++++.+. .++.||.+..+..
T Consensus       552 Asfs~Dgk~IVs~s-eDs~VYiW~~~~~  578 (712)
T KOG0283|consen  552 ASFSSDGKHIVSAS-EDSWVYIWKNDSF  578 (712)
T ss_pred             eeEccCCCEEEEee-cCceEEEEeCCCC
Confidence            67889999766665 7788998886543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=96.69  E-value=0.38  Score=42.19  Aligned_cols=189  Identities=14%  Similarity=0.137  Sum_probs=109.7

Q ss_pred             eEeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEE-ECCCcEEEEec
Q 017317           69 TRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVTE  144 (373)
Q Consensus        69 ~~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~~  144 (373)
                      .+...|--..-+.+++.++|+.. .++.++.+..+| ..|+.+ .+........ ++++++|.+-.|. ...+.+..++-
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeee
Confidence            33334432335667788888877 577899888888 445433 3333334567 9999998875554 55556666663


Q ss_pred             CC--cEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCc
Q 017317          145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFA  220 (373)
Q Consensus       145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~  220 (373)
                      -|  .-.+..  .+ ....++.+.|.|+- +.++...+                ....|-..|.++-+.... ......-
T Consensus       135 ~g~ck~t~~~--~~-~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  135 LGVCKYTIHE--DS-HREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             cccEEEEEec--CC-CcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccE
Confidence            23  222211  11 13567889999884 44444322                234555566655443322 2223345


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      +-++++|||. +..+....+.++.++++..+.  ...+  .-......+++.+. ++|++..-
T Consensus       196 ~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl--~a~~~v~sl~fspn-rywL~~at  252 (315)
T KOG0279|consen  196 NTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSL--EAFDIVNSLCFSPN-RYWLCAAT  252 (315)
T ss_pred             EEEEECCCCC-EEecCCCCceEEEEEccCCce--eEec--cCCCeEeeEEecCC-ceeEeecc
Confidence            7799999998 777766677888888865432  1111  11112455778665 68877543

>PTZ00420 coronin; Provisional

Probab=96.65  E-value=0.82  Score=45.45  Aligned_cols=150  Identities=13%  Similarity=0.006  Sum_probs=85.9

Q ss_pred             cCCcceEEEecC-CCE-EEEecCCeEEEEE-cCCc--eE-------EeeeecCccccCeEECCCCcEE-E-EECCCcEEE
Q 017317           76 LNGPEDVCVDRN-GVL-YTATRDGWIKRLH-KNGT--WE-------NWKLIGGDTLLGITTTQENEIL-V-CDADKGLLK  141 (373)
Q Consensus        76 ~~~P~~ia~d~~-G~l-~v~~~~g~I~~~~-~~g~--~~-------~~~~~~~~p~~gl~~d~~g~L~-v-a~~~~gl~~  141 (373)
                      -....++++.++ +.+ .+++.++.|..++ +++.  ..       .+........ .+++++++..+ + +...+.+..
T Consensus        74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrI  152 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNI  152 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEE
Confidence            344677888874 554 4777899999888 3321  11       1111223455 88999988643 3 344445666


Q ss_pred             Ee-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC
Q 017317          142 VT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (373)
Q Consensus       142 ~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  219 (373)
                      +| .++ ...... ..    ..+..++++++|.+.++.+.                 .+.|..+|+.+++......+...
T Consensus       153 WDl~tg~~~~~i~-~~----~~V~SlswspdG~lLat~s~-----------------D~~IrIwD~Rsg~~i~tl~gH~g  210 (568)
T PTZ00420        153 WDIENEKRAFQIN-MP----KKLSSLKWNIKGNLLSGTCV-----------------GKHMHIIDPRKQEIASSFHIHDG  210 (568)
T ss_pred             EECCCCcEEEEEe-cC----CcEEEEEECCCCCEEEEEec-----------------CCEEEEEECCCCcEEEEEecccC
Confidence            77 555 221111 11    24678999999998876542                 36788899887764432222111


Q ss_pred             c-ce-----EEEccCCCEEEEEeCCC---CeEEEEEec
Q 017317          220 A-NG-----VALSKDEDYLVVCETFK---FRCLKYWLK  248 (373)
Q Consensus       220 ~-~g-----i~~~~dg~~l~v~~~~~---~~i~~~~~~  248 (373)
                      . ..     ..++++++.+..+....   ..|..||+.
T Consensus       211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            1 11     12347877555554333   257777765

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.65  E-value=0.0045  Score=34.39  Aligned_cols=27  Identities=30%  Similarity=0.545  Sum_probs=20.8

Q ss_pred             cCCcceEEEecCCCEEEEe-cCCeEEEE
Q 017317           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRL  102 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~  102 (373)
                      +..|.+|+++++|+||+++ .+.+|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4579999999999999877 55666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.64  E-value=0.028  Score=49.81  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC---CeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      .++++.|.|...|.++.+.                 .+.|-.+|-..   ++...+.........+.|.|.|++|++.. 
T Consensus       174 evn~l~FHPre~ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-  235 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-  235 (430)
T ss_pred             cccceeecchhheEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence            4778999999999988653                 34455555321   11112233334456799999999777764 


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCC-----CCCCceeECCCCCEEEEEec
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLP-----GGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~-----g~p~~i~~d~dG~lwva~~~  283 (373)
                      ....+..||+..     .+.|....|     +....+...+.|++|++...
T Consensus       236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence            456677788653     334432211     22334567899999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.64  E-value=0.11  Score=51.41  Aligned_cols=177  Identities=10%  Similarity=0.023  Sum_probs=95.6

Q ss_pred             EEEecCCCEEEEe-cCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCcEEEEECCCc---EEEEecCC-cEEEeeccC
Q 017317           82 VCVDRNGVLYTAT-RDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKG---LLKVTEEG-VTVLASHVN  155 (373)
Q Consensus        82 ia~d~~G~l~v~~-~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g---l~~~~~~g-~~~l~~~~~  155 (373)
                      ..+.|+.+..+.+ +++.|..+..+-. -.+.......|+..+.|.|-|.-|+.-.+.+   ++..+... .++++.+  
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh--  534 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH--  534 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc--
Confidence            4455666666544 5566655553221 1111123344543556666664444322222   33333222 4444332  


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEE
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVV  234 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v  234 (373)
                         ..-+..+.+.|+.+...+.++                 .-.+-.+|..+|....+..+...| ..++++|+|++| +
T Consensus       535 ---lsDV~cv~FHPNs~Y~aTGSs-----------------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-a  593 (707)
T KOG0263|consen  535 ---LSDVDCVSFHPNSNYVATGSS-----------------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-A  593 (707)
T ss_pred             ---ccccceEEECCcccccccCCC-----------------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-e
Confidence               224567889998776555433                 234555566666655555554444 679999999844 3


Q ss_pred             EeCCCCeEEEEEecCCC-CcceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317          235 CETFKFRCLKYWLKGES-KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLS  285 (373)
Q Consensus       235 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~  285 (373)
                      +....+.|..||+.+.+ ...   +... .+....+.+..||++.++.....
T Consensus       594 Sg~ed~~I~iWDl~~~~~v~~---l~~H-t~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  594 SGDEDGLIKIWDLANGSLVKQ---LKGH-TGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             ecccCCcEEEEEcCCCcchhh---hhcc-cCceeEEEEecCCCEEEecCCCC
Confidence            43445667777775432 121   1111 34456688999999998876543

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.59  E-value=0.12  Score=44.54  Aligned_cols=159  Identities=16%  Similarity=0.150  Sum_probs=83.3

Q ss_pred             ccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEE--cCC------ceEEeeee-cCccccCeEECCCCcEEEEEC
Q 017317           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLH--KNG------TWENWKLI-GGDTLLGITTTQENEILVCDA  135 (373)
Q Consensus        65 l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~--~~g------~~~~~~~~-~~~p~~gl~~d~~g~L~va~~  135 (373)
                      ..++.++..| ..+=..|+..|+|+||.-.. +.+++..  .++      ..+.+... -++=. .|.+++.|.||..+.
T Consensus        23 ~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~-~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~~   99 (229)
T PF14517_consen   23 SDRAITIGSG-WNNFRDIAAGPNGRLYAIRN-DGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVTP   99 (229)
T ss_dssp             HHHSEEEESS--TT-SEEEE-TTS-EEEEET-TEEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEET
T ss_pred             cchhhhcCcc-ccccceEEEcCCceEEEEEC-CceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEecc
Confidence            4566777765 56667889999999996553 4788773  122      11222221 11233 688899999998877


Q ss_pred             CCcEEEEe-c-CC-cEE---EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE-eCCCC
Q 017317          136 DKGLLKVT-E-EG-VTV---LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY-DPSLN  208 (373)
Q Consensus       136 ~~gl~~~~-~-~g-~~~---l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~~~  208 (373)
                      ...+++.. . ++ ...   ....+.+...+....|.++++|.||.-+..                  |++++. .|...
T Consensus       100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~d------------------g~~~~~~~p~~~  161 (229)
T PF14517_consen  100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITPD------------------GRLYRRYRPDGG  161 (229)
T ss_dssp             T-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEETT------------------E-EEEE---SST
T ss_pred             ccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcCC------------------CceEEeCCCCCC
Confidence            66677876 2 22 211   112221223344567888999999988753                  678877 44332


Q ss_pred             eE------EEe-ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317          209 ET------SIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       209 ~~------~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  246 (373)
                      .-      ..+ ..+-..+.-|.+++++. ||.++ .+..|+|+.
T Consensus       162 ~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~-~~G~lyr~~  204 (229)
T PF14517_consen  162 SDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVK-SNGKLYRGR  204 (229)
T ss_dssp             T--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES
T ss_pred             CCccccccceeccCCcccceEEeeCCCCc-EEEEe-cCCEEeccC
Confidence            21      111 12233466788889987 88774 456788775

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.55  E-value=0.43  Score=40.94  Aligned_cols=172  Identities=13%  Similarity=0.152  Sum_probs=91.3

Q ss_pred             eEEEecCCCEEEEecCCeEEEEE-c-CCc-eEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEEeec
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLH-K-NGT-WENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVLASH  153 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~-~-~g~-~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l~~~  153 (373)
                      .+-+.-+|+.-+...+.+.+++. + .|. .+++...+.... .++...|+.-+. +...+-+..+| .+|  .+.+..+
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH  100 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH  100 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence            34455678877666555555554 3 343 334433333344 555544554333 33345577788 777  3333221


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCCcceEEEccCCC
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDED  230 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~~gi~~~~dg~  230 (373)
                           ...+|.+.+..+-.+.++.+-                 ...+..+|=....++.+   .+.......|.+.   +
T Consensus       101 -----~aqVNtV~fNeesSVv~Sgsf-----------------D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~  155 (307)
T KOG0316|consen  101 -----LAQVNTVRFNEESSVVASGSF-----------------DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---E  155 (307)
T ss_pred             -----cceeeEEEecCcceEEEeccc-----------------cceeEEEEcccCCCCccchhhhhcCceeEEEec---c
Confidence                 235788999888888887542                 23444444333333322   1111222233332   3


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC-CCceeECCCCCEEE-EEecC
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG-PDNIKLAPDGSFWI-AILQL  284 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~-p~~i~~d~dG~lwv-a~~~~  284 (373)
                      +.+++.+..+++..|++.-.+.     ..+ .-|. ...+.+.+||+.-+ +..++
T Consensus       156 heIvaGS~DGtvRtydiR~G~l-----~sD-y~g~pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTL-----SSD-YFGHPITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             cEEEeeccCCcEEEEEeeccee-----ehh-hcCCcceeEEecCCCCEEEEeeccc
Confidence            5888888888999999753221     111 1233 35688999998544 44443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.52  E-value=0.16  Score=45.28  Aligned_cols=151  Identities=15%  Similarity=0.206  Sum_probs=82.6

Q ss_pred             CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEE---------eeeecCccccCeEECCCCcEEEEECCCcEEE-
Q 017317           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN---------WKLIGGDTLLGITTTQENEILVCDADKGLLK-  141 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~---------~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~-  141 (373)
                      |.-..+|+..+.|||... .|+-+|-|-+++ .+|+.+.         +........ .|.|..|.+........|-++ 
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEEE
Confidence            445779999999998877 566889888887 5665432         111122334 666666665544433333222 


Q ss_pred             Ee-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEe-CCCCeE-EEeecC
Q 017317          142 VT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD-PSLNET-SILLDS  216 (373)
Q Consensus       142 ~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~~~~~-~~~~~~  216 (373)
                      +. .+|  ++.+- .   ....++..+.+..|+.-..+.+.                  ....|+. .+.|+. ..+...
T Consensus       290 Wri~tG~ClRrFd-r---AHtkGvt~l~FSrD~SqiLS~sf------------------D~tvRiHGlKSGK~LKEfrGH  347 (508)
T KOG0275|consen  290 WRIETGQCLRRFD-R---AHTKGVTCLSFSRDNSQILSASF------------------DQTVRIHGLKSGKCLKEFRGH  347 (508)
T ss_pred             EEEecchHHHHhh-h---hhccCeeEEEEccCcchhhcccc------------------cceEEEeccccchhHHHhcCc
Confidence            22 445  33221 1   11234667888888765454332                  1233332 222322 122233


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      -.+.|...|++||.+++-+. .++.+..++.+
T Consensus       348 sSyvn~a~ft~dG~~iisaS-sDgtvkvW~~K  378 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISAS-SDGTVKVWHGK  378 (508)
T ss_pred             cccccceEEcCCCCeEEEec-CCccEEEecCc
Confidence            34567888999998666554 45667666643

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.14  Score=43.04  Aligned_cols=102  Identities=18%  Similarity=0.332  Sum_probs=64.0

Q ss_pred             CccccCeEECCCCcEEEEECCCcEEEEecCC---cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317          116 GDTLLGITTTQENEILVCDADKGLLKVTEEG---VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (373)
Q Consensus       116 ~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g---~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~  192 (373)
                      +.-. ||+-|. .+||.++...-+...|+..   ...+.-..+|.+....|.+..= ||.+|.-...             
T Consensus       131 GeGW-gLt~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~-------------  194 (262)
T COG3823         131 GEGW-GLTSDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ-------------  194 (262)
T ss_pred             Ccce-eeecCC-cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeee-------------
Confidence            4456 777763 3688887655555555322   2222223456666666665432 6766654432             


Q ss_pred             cccCCceEEEEeCCCCeEEEeec-------------CCCCcceEEEccCCCEEEEEeC
Q 017317          193 EAKPHGKLLKYDPSLNETSILLD-------------SLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       193 ~~~~~g~l~~~d~~~~~~~~~~~-------------~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                          +-+|.|++|++|++....+             .....||||.+++++.+|++.-
T Consensus       195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence                2479999999998765321             1335799999999988998853

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.48  E-value=0.67  Score=43.74  Aligned_cols=63  Identities=21%  Similarity=0.419  Sum_probs=35.1

Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcce--eEEec--------------CCCCCCCceeECCCC-CEEEEEe
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQT--EIFVE--------------NLPGGPDNIKLAPDG-SFWIAIL  282 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~--------------~~~g~p~~i~~d~dG-~lwva~~  282 (373)
                      +..|.+|.|.++|||++...+.+..||++.+..-+.  +++..              .+.|.|.-+.++-|| ++|+++.
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            356889999999999999999999999987642221  12221              123456667889999 5898864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.44  E-value=0.72  Score=42.75  Aligned_cols=233  Identities=14%  Similarity=0.141  Sum_probs=123.8

Q ss_pred             ceEEEecCCCEE-EEecCC--eEEEEEcCCceEEeeee--cCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEEe
Q 017317           80 EDVCVDRNGVLY-TATRDG--WIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g--~I~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l~  151 (373)
                      +.+.+..+|.-. .++.+-  .|+.+..+++++.....  ...|+..|++.||.+-.+ |....-+..+| .+| .....
T Consensus       228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y  307 (519)
T KOG0293|consen  228 WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY  307 (519)
T ss_pred             EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc
Confidence            445666666655 333332  33444466664433222  233443788999987544 44334466677 677 43332


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--CcceEEEccCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--FANGVALSKDE  229 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--~~~gi~~~~dg  229 (373)
                      ..  +. ...+...+.-|||.=+|+.+                 +.+.++.+|.++.... -..+..  .-..+++++||
T Consensus       308 ~~--~~-~~S~~sc~W~pDg~~~V~Gs-----------------~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  308 PS--GL-GFSVSSCAWCPDGFRFVTGS-----------------PDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             cc--Cc-CCCcceeEEccCCceeEecC-----------------CCCcEEEecCCcchhh-cccccccceeEEEEEcCCC
Confidence            21  11 13456678888986556543                 3467888887754322 122222  34578999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCC-chhhhccCChHHHHHHHhcc--
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSS-PGLEFVHTSKATKHLLAAFP--  306 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~-~~~~~~~~~p~~~~~~~~~~--  306 (373)
                      ++++.... ..+|..|+......  .. ..+ ...-.-.+.++.||++.+....... .+|++- .....|+....-.  
T Consensus       367 k~vl~v~~-d~~i~l~~~e~~~d--r~-lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~  440 (519)
T KOG0293|consen  367 KYVLLVTV-DKKIRLYNREARVD--RG-LIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGH  440 (519)
T ss_pred             cEEEEEec-ccceeeechhhhhh--hc-ccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccc
Confidence            98888764 45677776433210  00 111 1122345788899988777655432 344443 3232333222111  


Q ss_pred             ----hhh-----hhccCCCccEEEEEEC-CCCcEEEEEeCCCC
Q 017317          307 ----KLI-----KLVAPLHKKAAVVNVA-ANGIVIRKFEDPNG  339 (373)
Q Consensus       307 ----~~~-----~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g  339 (373)
                          +..     ...+++.+.+-|+..+ ..|+++..++...+
T Consensus       441 fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~  483 (519)
T KOG0293|consen  441 FIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK  483 (519)
T ss_pred             eEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence                110     1123456666666666 56777777765543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.43  E-value=0.43  Score=47.23  Aligned_cols=182  Identities=13%  Similarity=0.066  Sum_probs=89.9

Q ss_pred             EEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcE---EEEECCCcEEEEe-cCCcEEEeecc
Q 017317           82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEI---LVCDADKGLLKVT-EEGVTVLASHV  154 (373)
Q Consensus        82 ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L---~va~~~~gl~~~~-~~g~~~l~~~~  154 (373)
                      +++++.|.+. +|..+|.+.++| ..+.-+..... ++... .+.|.++-+.   +.+.....+..+| .++...+.. .
T Consensus       111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVs-sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~-~  188 (775)
T KOG0319|consen  111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVS-SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT-M  188 (775)
T ss_pred             EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEE-EEEeCCccchhheeecCCCceEEEEEcccCchHHHH-H
Confidence            7889977776 677899999999 44444433333 44555 8888876654   3344334456666 433111100 0


Q ss_pred             CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC---CCE
Q 017317          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD---EDY  231 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d---g~~  231 (373)
                      . .....+.+|++.+|+.-.++.+.                 .--++.+|..+-+......-...-.++.+-++   ++.
T Consensus       189 ~-~H~S~vtsL~~~~d~~~~ls~~R-----------------Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~  250 (775)
T KOG0319|consen  189 I-LHKSAVTSLAFSEDSLELLSVGR-----------------DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG  250 (775)
T ss_pred             H-hhhhheeeeeeccCCceEEEecc-----------------CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence            0 11234678888888865555432                 22455666543332222333333445555444   222


Q ss_pred             EEEEeCCCCeEEEEE-ecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          232 LVVCETFKFRCLKYW-LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       232 l~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .|+...+..++.+++ ..+.+........+ .+.....+..-..+.+.+.+...
T Consensus       251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQ  303 (775)
T KOG0319|consen  251 EYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQ  303 (775)
T ss_pred             eEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccc
Confidence            333333455566665 33332222111111 11122334444555666666543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.37  E-value=1.1  Score=43.91  Aligned_cols=147  Identities=7%  Similarity=0.036  Sum_probs=82.6

Q ss_pred             cceEEEec-CCCEEEEecCCeEEEEEcCCce---EEeeee-cCccccCeEECCCCcEEEEECCCcEEEEe-cCCcEEEee
Q 017317           79 PEDVCVDR-NGVLYTATRDGWIKRLHKNGTW---ENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLAS  152 (373)
Q Consensus        79 P~~ia~d~-~G~l~v~~~~g~I~~~~~~g~~---~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g~~~l~~  152 (373)
                      -.++|+.. ++.|-++-.+|.|=.++....+   ..+... ....- +|++.+.|+|+-....+.|..+| .++.+....
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~  106 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI  106 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence            34566665 5555577778877777632221   122222 23345 99998888999887766788888 566222222


Q ss_pred             ccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecCC-CCcceEEEccC
Q 017317          153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDSL-FFANGVALSKD  228 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~~-~~~~gi~~~~d  228 (373)
                      ...+   ..+..+++.|.+. +-|+..                  .|.++.++...++.+.  .+... ...-.+.|.++
T Consensus       107 d~~g---g~IWsiai~p~~~~l~Igcd------------------dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen  107 DSNG---GAIWSIAINPENTILAIGCD------------------DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             cCCC---cceeEEEeCCccceEEeecC------------------CceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence            2222   2456777777663 455532                  2556666655444432  11111 22335777888


Q ss_pred             CCEEEEEeCCCCeEEEEEec
Q 017317          229 EDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~  248 (373)
                      +. -+++.+.++.|..+|..
T Consensus       166 ~~-~i~~Gs~Dg~Iriwd~~  184 (691)
T KOG2048|consen  166 GT-KIAGGSIDGVIRIWDVK  184 (691)
T ss_pred             cc-EEEecccCceEEEEEcC
Confidence            76 35555566667777754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.35  E-value=0.85  Score=43.49  Aligned_cols=184  Identities=15%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             cceEEEecCC-CEEEEecCCeEEEEEcCCce-EEee----------eecCccc--cCeEECCCC--cEEEEECCCcEEEE
Q 017317           79 PEDVCVDRNG-VLYTATRDGWIKRLHKNGTW-ENWK----------LIGGDTL--LGITTTQEN--EILVCDADKGLLKV  142 (373)
Q Consensus        79 P~~ia~d~~G-~l~v~~~~g~I~~~~~~g~~-~~~~----------~~~~~p~--~gl~~d~~g--~L~va~~~~gl~~~  142 (373)
                      -.++.+.+.| .|.+.+.......+|.+|.. ..+.          .+.|...  ..-++.|+.  .+.-|.....+..+
T Consensus       217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW  296 (641)
T ss_pred             cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence            4456666644 44455555566677777632 1111          1112222  022455544  34444443434444


Q ss_pred             e-c-CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEee--
Q 017317          143 T-E-EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILL--  214 (373)
Q Consensus       143 ~-~-~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~--  214 (373)
                      + . ..  .+++.+...+..--.+..-++++||.++.+.-                 ..|.|..++..+..+  ....  
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-----------------~DGSIQ~W~~~~~~v~p~~~vk~  359 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-----------------LDGSIQIWDKGSRTVRPVMKVKD  359 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-----------------cCCceeeeecCCcccccceEeee
Confidence            4 2 22  56665554443333456678999998844321                 246666666421111  1111  


Q ss_pred             --cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC-CC-CceeECCCCCEEEEEe
Q 017317          215 --DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG-GP-DNIKLAPDGSFWIAIL  282 (373)
Q Consensus       215 --~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~p-~~i~~d~dG~lwva~~  282 (373)
                        ........|+|+.||+ .+.+-...+.+..+++...+.- ..++. .++. +| .+.+++++..|.++..
T Consensus       360 AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkp-L~~~t-gL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  360 AHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKP-LNVRT-GLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             ccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccc-hhhhc-CCCccCCCCccccCCCceEEEecc
Confidence              1223456899999998 6666667778888887643211 11111 2221 22 3477889988777643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.35  E-value=0.086  Score=46.99  Aligned_cols=106  Identities=16%  Similarity=0.297  Sum_probs=59.9

Q ss_pred             CeEECCCCc-EEEEECCCcEEEEe--cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccccc
Q 017317          121 GITTTQENE-ILVCDADKGLLKVT--EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK  195 (373)
Q Consensus       121 gl~~d~~g~-L~va~~~~gl~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  195 (373)
                      .+.|.+|+. +.-+.. ....|+.  ++|  .+.+    .| ...++|...+.+||+-.++.++                
T Consensus       311 ~l~FSrD~SqiLS~sf-D~tvRiHGlKSGK~LKEf----rG-HsSyvn~a~ft~dG~~iisaSs----------------  368 (508)
T KOG0275|consen  311 CLSFSRDNSQILSASF-DQTVRIHGLKSGKCLKEF----RG-HSSYVNEATFTDDGHHIISASS----------------  368 (508)
T ss_pred             EEEEccCcchhhcccc-cceEEEeccccchhHHHh----cC-ccccccceEEcCCCCeEEEecC----------------
Confidence            677877774 444433 3456665  455  2222    12 1246888899999987777654                


Q ss_pred             CCceEEEEeCCCCeEEEeecC---CCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCC
Q 017317          196 PHGKLLKYDPSLNETSILLDS---LFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~~~~~---~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                       .|.|-.++.++.+.......   -...|.+.+-| .-.++.|++. .+.++..++.|+
T Consensus       369 -DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qGQ  425 (508)
T KOG0275|consen  369 -DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQGQ  425 (508)
T ss_pred             -CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccce
Confidence             36666666555443211111   11224444444 3456777764 567888888775

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.32  E-value=0.55  Score=43.98  Aligned_cols=208  Identities=13%  Similarity=0.089  Sum_probs=109.9

Q ss_pred             cCccccCeEECCCCcEEEEE-CCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317          115 GGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (373)
Q Consensus       115 ~~~p~~gl~~d~~g~L~va~-~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~  190 (373)
                      ++... .++.++.|.+.++. -...||.+. .+|  +..+..+     ...+..|.+..||..+|+.+.           
T Consensus        81 Pg~v~-al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~fs~dgs~iiTgsk-----------  143 (476)
T KOG0646|consen   81 PGPVH-ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKFSDDGSHIITGSK-----------  143 (476)
T ss_pred             cccee-eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEEeCCCcEEEecCC-----------
Confidence            44455 88888999877775 445688887 777  3333211     234678889999999998654           


Q ss_pred             cccccCCceEEEEeC------CCC-eEEE--eecCCC-CcceEEEccC--CCEEEEEeCCCCeEEEEEecCCCCcceeEE
Q 017317          191 LLEAKPHGKLLKYDP------SLN-ETSI--LLDSLF-FANGVALSKD--EDYLVVCETFKFRCLKYWLKGESKEQTEIF  258 (373)
Q Consensus       191 ~~~~~~~g~l~~~d~------~~~-~~~~--~~~~~~-~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~  258 (373)
                            .|.|+.+..      +.. .+..  ...... .-..+.++..  ...+|-+ +.++.+..|++.....-..  +
T Consensus       144 ------Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLlt--i  214 (476)
T KOG0646|consen  144 ------DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLLT--I  214 (476)
T ss_pred             ------CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeEE--E
Confidence                  355554431      110 0000  000000 0112222222  1224433 4556777788765432111  1


Q ss_pred             ecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCC
Q 017317          259 VENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDP  337 (373)
Q Consensus       259 ~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~  337 (373)
                        ..|..+..+++|+.+ ++|+++..+......+....+.-+.+                  ..-.++.++..+..+...
T Consensus       215 --~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v------------------~~k~~~~~~t~~~~~~Gh  274 (476)
T KOG0646|consen  215 --TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV------------------NQKGRHEENTQINVLVGH  274 (476)
T ss_pred             --ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc------------------cccccccccceeeeeccc
Confidence              234557788999877 48999877632222221111100000                  012234566677776554


Q ss_pred             CCceecceeEEEEe-CCEEEEeeCCCCeEEEeeC
Q 017317          338 NGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       338 ~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l  370 (373)
                      .+.  ..++.+... +|.|.+.+-....+..-++
T Consensus       275 ~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  275 ENE--SAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             cCC--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            432  357777665 7887777776666766554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.29  E-value=1.3  Score=43.80  Aligned_cols=161  Identities=14%  Similarity=0.070  Sum_probs=82.3

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC-----ccccCeEECCCCcEEEEEC------CCcEEEEe-cCC-c
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----DTLLGITTTQENEILVCDA------DKGLLKVT-EEG-V  147 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~va~~------~~gl~~~~-~~g-~  147 (373)
                      +++. ++++|+++.+++++.+| .+|+..-......     .......+ .+|.+|++..      ...|+.+| ++| .
T Consensus       116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            4554 68999999999999999 5776432211110     01101222 2567888743      23577888 677 3


Q ss_pred             EEEeeccCCc--------------c--------------ccccceeEEcCC-CcEEEEeCCccccccccccccc--cccC
Q 017317          148 TVLASHVNGS--------------R--------------INLADDLIAATD-GSIYFSVASTKFGLHNWGLDLL--EAKP  196 (373)
Q Consensus       148 ~~l~~~~~~~--------------~--------------~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~--~~~~  196 (373)
                      ..-....+..              +              ...-..+++|++ |.||+.++.-   .. +.....  ....
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp---~p-~~~~~r~gdnl~  269 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNP---SP-WNSHLRPGDNLY  269 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCC---CC-CCCCCCCCCCcc
Confidence            3221111100              0              011124688875 6789987541   00 111111  1122


Q ss_pred             CceEEEEeCCCCeEEEeecC-------C---CCcceEEEccCCC--EEEEEeCCCCeEEEEEec
Q 017317          197 HGKLLKYDPSLNETSILLDS-------L---FFANGVALSKDED--YLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~-------~---~~~~gi~~~~dg~--~l~v~~~~~~~i~~~~~~  248 (373)
                      ...|+.+|.+||+.......       .   ..|.-+.+..+|+  .+++.-+.++.++.+|..
T Consensus       270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~  333 (527)
T TIGR03075       270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRT  333 (527)
T ss_pred             ceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECC
Confidence            45799999999987653321       1   1222233334554  344444455566666643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=96.29  E-value=0.046  Score=39.72  Aligned_cols=85  Identities=12%  Similarity=0.099  Sum_probs=54.1

Q ss_pred             CceeECCC-CCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecce
Q 017317          267 DNIKLAPD-GSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFV  345 (373)
Q Consensus       267 ~~i~~d~d-G~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~  345 (373)
                      +++.++++ |.+|++....+-..      .-+...++.           ..+.|.+++|||..+....+-+  |  ...+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~------~~~~~~~le-----------~~~~GRll~ydp~t~~~~vl~~--~--L~fp   59 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDR------RDWVYDLLE-----------GRPTGRLLRYDPSTKETTVLLD--G--LYFP   59 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--T------TGHHHHHHH-----------T---EEEEEEETTTTEEEEEEE--E--ESSE
T ss_pred             CceeEecCCCEEEEEeCccccCc------cceeeeeec-----------CCCCcCEEEEECCCCeEEEehh--C--CCcc
Confidence            46788888 99999988754221      222333444           6778999999999888777653  3  3456


Q ss_pred             eEEEEeC--CEEEEeeCCCCeEEEeeCCC
Q 017317          346 TSALEFD--DHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       346 ~~~~~~~--g~L~vgs~~~~~i~~~~l~~  372 (373)
                      .++..+.  ..|.++.-...+|.|+=|.+
T Consensus        60 NGVals~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   60 NGVALSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             EEEEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             CeEEEcCCCCEEEEEeccCceEEEEEEeC
Confidence            7776653  47999999999999998765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.27  E-value=0.03  Score=48.11  Aligned_cols=124  Identities=22%  Similarity=0.275  Sum_probs=64.9

Q ss_pred             ccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEEc--CCc-------eEEe-eeecCccccCeEECCCCcEEEEE
Q 017317           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK--NGT-------WENW-KLIGGDTLLGITTTQENEILVCD  134 (373)
Q Consensus        65 l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~--~g~-------~~~~-~~~~~~p~~gl~~d~~g~L~va~  134 (373)
                      +...+++..+....=..|++|+.|.||.-+.+|.+++...  ++.       .+.+ ...-.... .+.++++|.||+.+
T Consensus        69 ~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~  147 (229)
T PF14517_consen   69 DSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAIT  147 (229)
T ss_dssp             HHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEE
T ss_pred             cccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEc
Confidence            3566777777444445899999999997788899988872  221       1222 11122334 67788999999988


Q ss_pred             CCCcEEEEe-cCC--cEEEe--eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317          135 ADKGLLKVT-EEG--VTVLA--SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       135 ~~~gl~~~~-~~g--~~~l~--~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      ....+++.. +++  -+.+.  ....+........|.+.++|+||..++                  +|.|||+.+.+
T Consensus       148 ~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~  207 (229)
T PF14517_consen  148 PDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ  207 (229)
T ss_dssp             TTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred             CCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence            654477764 322  11110  111122223355678899999998854                  48999987654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.19  E-value=1.1  Score=41.84  Aligned_cols=163  Identities=15%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             ecCC-CEEE-Eec--CCeEEEEE-cCCceEEeeeecCc-cccCeEECCCC-cEEEEECCCcEEEEe-cCC-cEEEeeccC
Q 017317           85 DRNG-VLYT-ATR--DGWIKRLH-KNGTWENWKLIGGD-TLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASHVN  155 (373)
Q Consensus        85 d~~G-~l~v-~~~--~g~I~~~~-~~g~~~~~~~~~~~-p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g-~~~l~~~~~  155 (373)
                      .++| +|++ +..  ...++.+| .+++.+.+.+..+. .. |..+.+++ .+|..-....|.+++ .+. .+.+....+
T Consensus        44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~  122 (386)
T PF14583_consen   44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD  122 (386)
T ss_dssp             -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred             CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence            3455 3443 443  34678888 66777666554333 34 66666555 454333346799999 666 555554333


Q ss_pred             CccccccceeEEcCCCcEEEEeCCcc--cc-cc--ccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC-
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTK--FG-LH--NWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE-  229 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~--~~-~~--~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg-  229 (373)
                      +..  .-.....+.|++.+++....+  +. +.  ....+..+..+..+|+++|.++|+.+++...-..-+-+.++|.. 
T Consensus       123 ~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  123 DWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             ccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence            211  111233466888877643221  10 11  12345666777889999999999988876654444555555532 


Q ss_pred             CEEEEEeCC-----CCeEEEEEecCC
Q 017317          230 DYLVVCETF-----KFRCLKYWLKGE  250 (373)
Q Consensus       230 ~~l~v~~~~-----~~~i~~~~~~~~  250 (373)
                      ..+.+|..+     ..||+.++.+|.
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCC
Confidence            233344433     236666665544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=96.07  E-value=0.19  Score=46.38  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=63.8

Q ss_pred             CeEECCCCcEEEEECCCcEE-EEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317          121 GITTTQENEILVCDADKGLL-KVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~-~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                      ++++.+||.|.....-..+- .+| .+| ...+..   | ....+.+++++|+|....+.++               ...
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~---g-H~k~I~~V~fsPNGy~lATgs~---------------Dnt  368 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA---G-HIKEILSVAFSPNGYHLATGSS---------------DNT  368 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCcEEEEec---c-cccceeeEeECCCceEEeecCC---------------CCc
Confidence            89999999997653222232 345 677 333222   1 2235779999999988877654               233


Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  246 (373)
                      -+||.+..... .-.+...-.....+.++|+...++++...++.+..+.
T Consensus       369 ~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  369 CKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             EEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence            46666654322 2122222233467889997666888877777665554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.99  E-value=2.5  Score=44.24  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=93.0

Q ss_pred             ceEEEec-CC-CEEEEecCCeEEEEE-cCCce-EEeeeecCccccCeEECC-CCcEEEE-ECCCcEEEEe-cCC--cEEE
Q 017317           80 EDVCVDR-NG-VLYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQ-ENEILVC-DADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        80 ~~ia~d~-~G-~l~v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~-~g~L~va-~~~~gl~~~~-~~g--~~~l  150 (373)
                      .++++.+ ++ .|.+++.+|.|..++ ..++. ..+....+... ++++++ ++.++++ ...+.+..++ .++  ...+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            4566655 33 455677889999998 34432 22322234456 888985 6666554 4334466666 555  3332


Q ss_pred             eeccCCccccccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEeecCCCCcceEEEcc
Q 017317          151 ASHVNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSK  227 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~~gi~~~~  227 (373)
                      ..      ...+..+.+. ++|.+.++.+                 ..+.|..+|..+.+.  ..+.........+.|. 
T Consensus       615 ~~------~~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-  670 (793)
T PLN00181        615 KT------KANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-  670 (793)
T ss_pred             ec------CCCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence            11      1134566664 4676665543                 247888898765432  1221111223456675 


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCC----cceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESK----EQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +++ .+++...++.|..|++.....    .....+. ........++++++|.+.++..
T Consensus       671 ~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        671 DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence            666 445555667788887642211    1112221 1122345577888887655543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.96  E-value=0.56  Score=44.45  Aligned_cols=83  Identities=11%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             CceEEEEeCCCCeEEEee-cC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317          197 HGKLLKYDPSLNETSILL-DS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~-~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d  274 (373)
                      .|.|-.+|..+.....-+ .. -....||+|+|....|+|+-..+.+|+.||...++....-.+...    -..+++.++
T Consensus       186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~  261 (673)
T KOG4378|consen  186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC  261 (673)
T ss_pred             CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence            577777776533222111 11 123479999999998999988899999999765444333333211    145788899


Q ss_pred             CCEEEEEec
Q 017317          275 GSFWIAILQ  283 (373)
Q Consensus       275 G~lwva~~~  283 (373)
                      |.+.++...
T Consensus       262 G~~L~aG~s  270 (673)
T KOG4378|consen  262 GTYLCAGNS  270 (673)
T ss_pred             ceEEEeecC
Confidence            987776543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=95.96  E-value=0.4  Score=42.82  Aligned_cols=71  Identities=13%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCC
Q 017317          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~  240 (373)
                      .+.+.|.+-|.+....                 -.+|+|..||-.|-...........| ..++||+||+ .+++.+...
T Consensus        26 a~~~~Fs~~G~~lAvG-----------------c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~   87 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVG-----------------CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDW   87 (405)
T ss_pred             cceEEeccCcceeeee-----------------ccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCc
Confidence            5567788888654332                 13589999998876654444443333 6899999999 555666677


Q ss_pred             eEEEEEecCC
Q 017317          241 RCLKYWLKGE  250 (373)
Q Consensus       241 ~i~~~~~~~~  250 (373)
                      .+..+|+..+
T Consensus        88 si~lwDl~~g   97 (405)
T KOG1273|consen   88 SIKLWDLLKG   97 (405)
T ss_pred             eeEEEeccCC
Confidence            8888887543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.95  E-value=1.6  Score=41.51  Aligned_cols=59  Identities=20%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ++..++||+.+.+...  +.+++-+-.|...  .+...........++..+.+|.+|++...+
T Consensus       243 ~v~~~~dG~~~~vg~~--G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G  301 (398)
T PLN00033        243 TVNRSPDGDYVAVSSR--GNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRGG  301 (398)
T ss_pred             eEEEcCCCCEEEEECC--ccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCCc
Confidence            4566788874444433  2465544333211  111111223344567778999999998765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=95.85  E-value=1.2  Score=39.55  Aligned_cols=162  Identities=16%  Similarity=0.228  Sum_probs=87.6

Q ss_pred             eEEEecCCCEEE-EecCCeEEEEEcCCceEEee---eecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEee
Q 017317           81 DVCVDRNGVLYT-ATRDGWIKRLHKNGTWENWK---LIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        81 ~ia~d~~G~l~v-~~~~g~I~~~~~~g~~~~~~---~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~  152 (373)
                      .+.++|+|..++ |..+-.|+.++..|.-+.+.   ...+... ++.+.+|++ |+-|...+.+..+| ++|  ......
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~  130 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG  130 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence            356778898884 45777888887555443332   2234566 888888886 45556667899999 777  222211


Q ss_pred             ccCCccccccceeEEc-----------CCCcEEEEeCCcc---------ccccc-----cccccccccCCceEEEEeCCC
Q 017317          153 HVNGSRINLADDLIAA-----------TDGSIYFSVASTK---------FGLHN-----WGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~-----------~dG~l~v~~~~~~---------~~~~~-----~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      .     ...+|.+...           .||.+=+=|...+         |.+..     ...++..+.-++.|-.+|+..
T Consensus       131 h-----~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~  205 (338)
T KOG0265|consen  131 H-----TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK  205 (338)
T ss_pred             c-----cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeecccc
Confidence            1     0122222222           2343322222211         11111     011222222234445556654


Q ss_pred             CeEEEeecCCCC-cceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          208 NETSILLDSLFF-ANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       208 ~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +.......+... ..++.++++|. ...++...+.+.++++..
T Consensus       206 ~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  206 NDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             CcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecc
Confidence            444444444333 36899999998 566777778888888653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=95.74  E-value=1.3  Score=40.37  Aligned_cols=104  Identities=18%  Similarity=0.219  Sum_probs=64.9

Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeC
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      ...+..|...+||..|++.+.                ....+...|++++....+. .++....-+.|+||++.++.+..
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~  258 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC  258 (445)
T ss_pred             CceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence            356678888999999998653                3456888888888766554 33444455789999997776643


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                        .++.+.+...+ .-+.+.+. -.+|+.-.-+-+++|+ |.++..
T Consensus       259 --davfrlw~e~q-~wt~erw~-lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  259 --DAVFRLWQENQ-SWTKERWI-LGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             --cceeeeehhcc-cceeccee-ccCCceeeeeecCCCCEEEEEEc
Confidence              35666663221 12223333 2344555566788885 444444

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.68  E-value=0.62  Score=44.38  Aligned_cols=189  Identities=10%  Similarity=0.110  Sum_probs=98.8

Q ss_pred             CcceEEEecCC-CEEEEecCCeEEEEEcCC---c---eEEeeeecCccccCeEECCCCcE-EEEECCCcEEEEecCCcEE
Q 017317           78 GPEDVCVDRNG-VLYTATRDGWIKRLHKNG---T---WENWKLIGGDTLLGITTTQENEI-LVCDADKGLLKVTEEGVTV  149 (373)
Q Consensus        78 ~P~~ia~d~~G-~l~v~~~~g~I~~~~~~g---~---~~~~~~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~~~g~~~  149 (373)
                      .-..+++|+.| +++.|+.+..|..||-.|   .   ++.+......+..++.+.+.|.- .|.....-...+|.+|.++
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~  248 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI  248 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence            34568899866 566888888898888433   2   22222222233227888877764 4444333344455777222


Q ss_pred             E--eecc------CCcc--ccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-
Q 017317          150 L--ASHV------NGSR--INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-  217 (373)
Q Consensus       150 l--~~~~------~~~~--~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-  217 (373)
                      .  ....      ....  ...+++-.+.|+. ..+++.+.               .++-+||-++....+.+++.... 
T Consensus       249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhheeEEeeccC
Confidence            1  1100      0000  0122333455544 34555432               23346776665444555544322 


Q ss_pred             ---C-CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCC-CCCCceeECCCCCEEEEEe
Q 017317          218 ---F-FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLP-GGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       218 ---~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-g~p~~i~~d~dG~lwva~~  282 (373)
                         . .+..-+|++||+ ++.+...++.|..++.........-.+.+ ..+ .-...+.++.||++.++-.
T Consensus       314 ~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             CCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence               2 245568999998 57666777777776643222111111111 122 1356788999999877643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.67  E-value=2.1  Score=41.01  Aligned_cols=129  Identities=17%  Similarity=0.080  Sum_probs=68.5

Q ss_pred             EEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEE-ECC--CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCC
Q 017317           99 IKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVC-DAD--KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDG  171 (373)
Q Consensus        99 I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va-~~~--~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG  171 (373)
                      ++.++ ..|+...+....+.-. ...+.+||+ |.++ +..  ..|+.+| ..+ ...+.. ..+.  ..  .=.+.|||
T Consensus       220 i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi--~~--~Ps~spdG  293 (425)
T COG0823         220 IYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGI--NT--SPSWSPDG  293 (425)
T ss_pred             EEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCcc--cc--CccCCCCC
Confidence            55555 2333333333233333 556778885 3333 222  3477777 333 333321 1111  00  22567899


Q ss_pred             -cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe--EEEEEec
Q 017317          172 -SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR--CLKYWLK  248 (373)
Q Consensus       172 -~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--i~~~~~~  248 (373)
                       .|+|+...               .+.-.||++|.++++.+.+-.......--.++|||+.+.+.....+.  |..+++.
T Consensus       294 ~~ivf~Sdr---------------~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         294 SKIVFTSDR---------------GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             CEEEEEeCC---------------CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence             46665432               12237999999988877665444444466789999977777633333  5555543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.62  E-value=0.99  Score=41.35  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe---------
Q 017317          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR---------  241 (373)
Q Consensus       171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~---------  241 (373)
                      .++||.|....             ...++++.+|.+++++.-..+....++ +++++|++.+|++++.-.|         
T Consensus         3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            37888876411             123699999999888765444444455 7789999999999874322         


Q ss_pred             EEEEEecCCCCcceeEEecCC-----CCCCCceeECCCCC-EEEEEecC
Q 017317          242 CLKYWLKGESKEQTEIFVENL-----PGGPDNIKLAPDGS-FWIAILQL  284 (373)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~~~-----~g~p~~i~~d~dG~-lwva~~~~  284 (373)
                      |..||...- ....++.+...     -.++..+++..||+ +||....+
T Consensus        69 v~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP  116 (342)
T PF06433_consen   69 VEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP  116 (342)
T ss_dssp             EEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS
T ss_pred             EEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCC
Confidence            334553321 11223333221     12466788888886 67766544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=95.55  E-value=0.14  Score=45.46  Aligned_cols=145  Identities=14%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             eEEEecCCCEE-EEecCCeEEEEEcCC-----ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEec-CCcEEEeec
Q 017317           81 DVCVDRNGVLY-TATRDGWIKRLHKNG-----TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE-EGVTVLASH  153 (373)
Q Consensus        81 ~ia~d~~G~l~-v~~~~g~I~~~~~~g-----~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~-~g~~~l~~~  153 (373)
                      .+.+.|...|. .++.++.|..+|-..     .++.+ ....... +|.++|.|+...+...+-+.++.. +-.+-+...
T Consensus       177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vr-siSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVR-SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             ceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceee-eEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence            35556644555 455677777776111     11222 1223345 899999998554433444544432 122333332


Q ss_pred             cC-CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCCcceEEEccCC
Q 017317          154 VN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFFANGVALSKDE  229 (373)
Q Consensus       154 ~~-~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~~~gi~~~~dg  229 (373)
                      .+ ......++.+...+.|+||++.+.                 .|.|-.+|.-.++....   +.+........|..+|
T Consensus       255 nPd~qht~ai~~V~Ys~t~~lYvTaSk-----------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~  317 (430)
T KOG0640|consen  255 NPDDQHTGAITQVRYSSTGSLYVTASK-----------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG  317 (430)
T ss_pred             CcccccccceeEEEecCCccEEEEecc-----------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence            22 222345778888999999999764                 47777777665543221   2233334456688888


Q ss_pred             CEEEEEeCCCCeEEEEE
Q 017317          230 DYLVVCETFKFRCLKYW  246 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~  246 (373)
                      ++++  .++...+.++|
T Consensus       318 kyiL--sSG~DS~vkLW  332 (430)
T KOG0640|consen  318 KYIL--SSGKDSTVKLW  332 (430)
T ss_pred             eEEe--ecCCcceeeee
Confidence            7443  33445555544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.55  E-value=2.6  Score=42.06  Aligned_cols=175  Identities=10%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceE-Eeee--ecCccccCeEECCCCcEEEEECCCcEEEEe--cCC--cEEEeec
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKL--IGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVLASH  153 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~-~~~~--~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g--~~~l~~~  153 (373)
                      ++++++|...+..-+.+|..++ .+++.. ....  ...... .+++++|++..+.-....+.++-  +.|  ++.....
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~  103 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI  103 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence            8999999887766667888888 666553 1111  122345 78888888644433334555544  566  3332211


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCE-
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDY-  231 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~-  231 (373)
                      -.    ..+..++++|.|.+.-+ .+                ..+.+-.+|-+.+..+..+.+...+ ..+.|.|+-+. 
T Consensus       104 He----~Pvi~ma~~~~g~LlAt-gg----------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~  162 (775)
T KOG0319|consen  104 HE----APVITMAFDPTGTLLAT-GG----------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW  162 (775)
T ss_pred             cC----CCeEEEEEcCCCceEEe-cc----------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence            01    12356899999855444 32                3467777777777777666664443 56777777543 


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva  280 (373)
                      ++++...+..+..|++..... -..... .-..-..++++.+|++-.++
T Consensus       163 lL~sg~~D~~v~vwnl~~~~t-cl~~~~-~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  163 LLASGATDGTVRVWNLNDKRT-CLHTMI-LHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             heeecCCCceEEEEEcccCch-HHHHHH-hhhhheeeeeeccCCceEEE
Confidence            445556677888888764322 000000 00112445777777754444

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=95.54  E-value=0.17  Score=48.80  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEEEEe
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~  236 (373)
                      +..|..|++|+.|+||+.+....-.......      +...+..=+++++++......  ...-.|.+|+||++.++|.-
T Consensus       499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~------G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v  572 (616)
T COG3211         499 FNSPDNLAFDPWGRLWIQTDGSGSTLRNRFR------GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV  572 (616)
T ss_pred             ccCCCceEECCCCCEEEEecCCCCccCcccc------cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence            4458899999999999986542110111000      011222334555555544433  23457899999999998873

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.46  E-value=1.3  Score=41.11  Aligned_cols=140  Identities=13%  Similarity=0.109  Sum_probs=80.3

Q ss_pred             CeEECCCCcEEEE-ECC--CcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317          121 GITTTQENEILVC-DAD--KGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       121 gl~~d~~g~L~va-~~~--~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      -+.+.++|+-... +..  ..++.+..++ ++...+ ..|. ...+.-|.+.||.+-.++.+-                 
T Consensus       229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t-lvgh-~~~V~yi~wSPDdryLlaCg~-----------------  289 (519)
T KOG0293|consen  229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT-LVGH-SQPVSYIMWSPDDRYLLACGF-----------------  289 (519)
T ss_pred             EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee-eecc-cCceEEEEECCCCCeEEecCc-----------------
Confidence            4556666653332 211  2334443444 443322 2221 124567889999988888653                 


Q ss_pred             CceEEEEeCCCCeEEEeec-C-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317          197 HGKLLKYDPSLNETSILLD-S-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~-~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d  274 (373)
                      ...+...|.+++....... + ...+...+|.|||.. +|+.+.+..++.++++|...+..+...  .+ ....+++..|
T Consensus       290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~-~v~dlait~D  365 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR--DP-KVHDLAITYD  365 (519)
T ss_pred             hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc--cc-eeEEEEEcCC
Confidence            2347778887776554332 2 234567889999985 666666778999998886544333221  11 2456888889


Q ss_pred             CCE-EEEEec
Q 017317          275 GSF-WIAILQ  283 (373)
Q Consensus       275 G~l-wva~~~  283 (373)
                      |.. +..+..
T Consensus       366 gk~vl~v~~d  375 (519)
T KOG0293|consen  366 GKYVLLVTVD  375 (519)
T ss_pred             CcEEEEEecc
Confidence            964 444433

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.46  E-value=1.3  Score=41.32  Aligned_cols=142  Identities=15%  Similarity=0.084  Sum_probs=69.9

Q ss_pred             EEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEEEEEeCCCCeEE
Q 017317          166 IAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCL  243 (373)
Q Consensus       166 ~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~  243 (373)
                      ++.+|| +|.|+...               .....+|.+|.++++.+++-.+- ....|..++++.+.+|.... ...|.
T Consensus        42 ~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~  105 (386)
T PF14583_consen   42 CFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLR  105 (386)
T ss_dssp             -B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEE
T ss_pred             CcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEE
Confidence            557788 56664321               23457999999999988875542 33447888888888866543 35799


Q ss_pred             EEEecCCCCcceeEEecCCCCCC--CceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEE
Q 017317          244 KYWLKGESKEQTEIFVENLPGGP--DNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAV  321 (373)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~p--~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v  321 (373)
                      ++++++.+.  ..++. ...+.-  .....++|++.+++....+. ....+.+....++++.           ..++..+
T Consensus       106 ~vdL~T~e~--~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i  170 (386)
T PF14583_consen  106 RVDLDTLEE--RVVYE-VPDDWKGYGTWVANSDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRI  170 (386)
T ss_dssp             EEETTT--E--EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEE
T ss_pred             EEECCcCcE--EEEEE-CCcccccccceeeCCCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceE
Confidence            999876432  22332 111111  12335788998888754321 1111223344555555           3444567


Q ss_pred             EEECC-CCcEEEEEeCCC
Q 017317          322 VNVAA-NGIVIRKFEDPN  338 (373)
Q Consensus       322 ~~~~~-~g~~~~~~~~~~  338 (373)
                      +.++. .|+....+.+..
T Consensus       171 ~~idl~tG~~~~v~~~~~  188 (386)
T PF14583_consen  171 FTIDLKTGERKVVFEDTD  188 (386)
T ss_dssp             EEEETTT--EEEEEEESS
T ss_pred             EEEECCCCceeEEEecCc
Confidence            88884 466555554433

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.46  E-value=1.9  Score=40.30  Aligned_cols=145  Identities=16%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             cCCCEEEEe-cCCeEEEEEcCCceEEeeeecCccc-----cCeEECCCCc---EEEE-ECC---C--cEEEEe-cCC-cE
Q 017317           86 RNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTL-----LGITTTQENE---ILVC-DAD---K--GLLKVT-EEG-VT  148 (373)
Q Consensus        86 ~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~-----~gl~~d~~g~---L~va-~~~---~--gl~~~~-~~g-~~  148 (373)
                      |...+++++ .+++++.++.+|+...... .++++     .++.+  .|+   |-++ +..   .  .+++++ .+| ++
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            345566665 6788999998887544332 34443     13333  232   3344 332   2  266777 456 55


Q ss_pred             EEeeccC--CccccccceeEE--cC-CCcEEEEeCCccccccccccccccccCCceE--EEEe-CCCCeEE----EeecC
Q 017317          149 VLASHVN--GSRINLADDLIA--AT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYD-PSLNETS----ILLDS  216 (373)
Q Consensus       149 ~l~~~~~--~~~~~~~~~l~~--~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d-~~~~~~~----~~~~~  216 (373)
                      .+.....  ......+.+++.  ++ +|.+|+-...                ..|.+  |++. ...+.+.    .-+..
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            5432110  112234566665  43 5777665322                12433  3333 2333321    11233


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      ...+.|.+.+.....||+++.. .+|++|+.+..
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~  239 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPE  239 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCC
T ss_pred             CCcceEEEEecccCCEEEecCc-cEEEEEecCCC
Confidence            4578999999988899999965 69999997643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.44  E-value=3.3  Score=41.60  Aligned_cols=224  Identities=11%  Similarity=0.051  Sum_probs=110.5

Q ss_pred             CEEEEecCCeEEEEEcCCceEEeeee---cCccccCeEECCCCcE--EEEE-------CCCcEEEEecCC-cEEEeeccC
Q 017317           89 VLYTATRDGWIKRLHKNGTWENWKLI---GGDTLLGITTTQENEI--LVCD-------ADKGLLKVTEEG-VTVLASHVN  155 (373)
Q Consensus        89 ~l~v~~~~g~I~~~~~~g~~~~~~~~---~~~p~~gl~~d~~g~L--~va~-------~~~gl~~~~~~g-~~~l~~~~~  155 (373)
                      .+|+- .+|.+.+++.+ ..+.....   ...+. ..++.++|+.  |+..       ....|+..+..+ .+.+..   
T Consensus       322 ~~~~v-~~G~l~~~~~~-~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~---  395 (591)
T PRK13616        322 GLHAL-VDGSLVSVDGQ-GVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE---  395 (591)
T ss_pred             cceEE-ECCeEEEecCC-CeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec---
Confidence            45532 36777777532 23222211   12344 6778888864  3331       112344444333 333322   


Q ss_pred             CccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEE
Q 017317          156 GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV  234 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v  234 (373)
                      +.   ....-.+++|| .||+.......      .-+......+.++.++.+++....  ........+.+++||.++.+
T Consensus       396 g~---~~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~  464 (591)
T PRK13616        396 GH---SLTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAM  464 (591)
T ss_pred             CC---CCCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEE
Confidence            11   12344788995 68887422000      000111234567766665554432  11224678999999998888


Q ss_pred             EeCCCCeEEEEEe---cCCC--CcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhh
Q 017317          235 CETFKFRCLKYWL---KGES--KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLI  309 (373)
Q Consensus       235 ~~~~~~~i~~~~~---~~~~--~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  309 (373)
                      .-.  .+|+.--+   .+..  ..........+...+..+.--.++.|.+++.++.                        
T Consensus       465 i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~------------------------  518 (591)
T PRK13616        465 IIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE------------------------  518 (591)
T ss_pred             EEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC------------------------
Confidence            763  46665222   2211  1111112222222245566667788887765431                        


Q ss_pred             hhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEe
Q 017317          310 KLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKL  368 (373)
Q Consensus       310 ~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~  368 (373)
                               ..+..++.+|.....+  +.+.....+..+....+.||+.+-++  +..+
T Consensus       519 ---------~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~g--~~~l  564 (591)
T PRK13616        519 ---------HPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDARA--VLQL  564 (591)
T ss_pred             ---------CceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCCc--eEEe
Confidence                     1256667777664432  22222334555555556888887554  4444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.42  E-value=1.1  Score=42.06  Aligned_cols=200  Identities=13%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             ceEEEecCCCEEE-EecCCeEEEEE-cCCc-eEEeeeecCccccCeEEC-CCCcEEEEECCCcEEEEe-c-CC-cEEEee
Q 017317           80 EDVCVDRNGVLYT-ATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTT-QENEILVCDADKGLLKVT-E-EG-VTVLAS  152 (373)
Q Consensus        80 ~~ia~d~~G~l~v-~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d-~~g~L~va~~~~gl~~~~-~-~g-~~~l~~  152 (373)
                      -++|+.+||+.++ |..+..|..++ .+.+ +..+....+... +++|- ...+||.+....++-.++ + -. ++.+..
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence            3588889998874 44556666777 3332 333444455666 88885 233799987766665555 2 22 333222


Q ss_pred             ccCCc----cccccceeEEc-CCC--cEEEEeCCcc--cc-----ccc----cccccccccCCceEEEEeCCCCeEE---
Q 017317          153 HVNGS----RINLADDLIAA-TDG--SIYFSVASTK--FG-----LHN----WGLDLLEAKPHGKLLKYDPSLNETS---  211 (373)
Q Consensus       153 ~~~~~----~~~~~~~l~~~-~dG--~l~v~~~~~~--~~-----~~~----~~~~~~~~~~~g~l~~~d~~~~~~~---  211 (373)
                      +..+.    .+..-..+++. .|.  ++|=-.....  |.     +.+    ...+...+..+|.|+.++...++.-   
T Consensus       285 Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  285 HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             CccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence            11110    00000112222 222  2331110000  10     111    0123456677888888887655432   


Q ss_pred             EeecC-------CC---CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCC-EEE
Q 017317          212 ILLDS-------LF---FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGS-FWI  279 (373)
Q Consensus       212 ~~~~~-------~~---~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~-lwv  279 (373)
                      ..+++       ..   +.++++..+-.+ |+.+.++++.| |+|.-.+.......+.. .+.|+.+.+++..+|. ||+
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~v-rLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~iva  442 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCV-RLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVA  442 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCc-eEEecCCCCce-EEEEecCCccccceeeecccccEEEEEEEccCCCEEEE
Confidence            12221       11   446788888777 77777766544 44433333333333321 3568889999999997 777


Q ss_pred             EEe
Q 017317          280 AIL  282 (373)
Q Consensus       280 a~~  282 (373)
                      +..
T Consensus       443 giG  445 (479)
T KOG0299|consen  443 GIG  445 (479)
T ss_pred             ecc
Confidence            754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.41  E-value=0.25  Score=45.21  Aligned_cols=134  Identities=13%  Similarity=0.052  Sum_probs=78.3

Q ss_pred             CCEEEEecCCeEEEEEcCCce---EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEEEeeccCCcccc
Q 017317           88 GVLYTATRDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASHVNGSRIN  160 (373)
Q Consensus        88 G~l~v~~~~g~I~~~~~~g~~---~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~l~~~~~~~~~~  160 (373)
                      -+|..|+.++.++.+++....   +.......-.+ .+.|.||++..+. ...+.+-.++ .+|  +..+..+     ..
T Consensus       337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-----v~  410 (480)
T KOG0271|consen  337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-----VA  410 (480)
T ss_pred             ceeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-----cc
Confidence            356677788888888743211   11111122345 7889998765443 4445666677 666  3333211     12


Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCC
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~  239 (373)
                      .+..++...|-+|.|+.+.               ..+-.+|.+  .+++...-+.+ -.....+.++|||.  -|+..+.
T Consensus       411 ~VYqvawsaDsRLlVS~Sk---------------DsTLKvw~V--~tkKl~~DLpGh~DEVf~vDwspDG~--rV~sggk  471 (480)
T KOG0271|consen  411 AVYQVAWSADSRLLVSGSK---------------DSTLKVWDV--RTKKLKQDLPGHADEVFAVDWSPDGQ--RVASGGK  471 (480)
T ss_pred             eeEEEEeccCccEEEEcCC---------------CceEEEEEe--eeeeecccCCCCCceEEEEEecCCCc--eeecCCC
Confidence            4677889999999999764               122344544  33443322221 22345788999997  3555677


Q ss_pred             CeEEEEE
Q 017317          240 FRCLKYW  246 (373)
Q Consensus       240 ~~i~~~~  246 (373)
                      ++++++|
T Consensus       472 dkv~~lw  478 (480)
T KOG0271|consen  472 DKVLRLW  478 (480)
T ss_pred             ceEEEee
Confidence            8899887

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.61  Score=43.08  Aligned_cols=181  Identities=13%  Similarity=0.101  Sum_probs=91.8

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeec
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH  153 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~  153 (373)
                      ..+++..+|.+. ++..+|.+..++ ++-.... .....+... .|.|.+||++.+.........++ .+|  +....+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence            456666676666 566777777776 5432211 112234456 89999999887765444555555 566  4433222


Q ss_pred             cCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCC------eEEEeecCCCCcceEEEc
Q 017317          154 VNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN------ETSILLDSLFFANGVALS  226 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~------~~~~~~~~~~~~~gi~~~  226 (373)
                      .....+...+- -.|++ -.+++++..               .+.++|..++....      +.............++++
T Consensus       227 ~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  227 SKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             ccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            12222222221 12222 267777543               13344444443211      111122234455678999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva  280 (373)
                      .||+++-+. +..+.|..|+...-  .....+...-.++..++.+.+|-+.-..
T Consensus       291 ~dGkf~AlG-T~dGsVai~~~~~l--q~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  291 DDGKFLALG-TMDGSVAIYDAKSL--QRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             CCCcEEEEe-ccCCcEEEEEecee--eeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            999965555 45677888774321  1111111111134556666666555444

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=95.30  E-value=2.2  Score=38.82  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=28.6

Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  215 (373)
                      .+|+|..+.+|.+.|+.-                 ....|+++|+.++++...+.
T Consensus       145 HiNsV~~~~~G~yLiS~R-----------------~~~~i~~I~~~tG~I~W~lg  182 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSR-----------------NTSTIYKIDPSTGKIIWRLG  182 (299)
T ss_pred             EeeeeeecCCccEEEEec-----------------ccCEEEEEECCCCcEEEEeC
Confidence            467888889999888742                 34689999988888766543

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.16  E-value=4  Score=40.98  Aligned_cols=153  Identities=13%  Similarity=0.082  Sum_probs=81.4

Q ss_pred             CCcceEEEecCCCEE--EEe-------cCCeEEEEEcCCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cC
Q 017317           77 NGPEDVCVDRNGVLY--TAT-------RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EE  145 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~--v~~-------~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~  145 (373)
                      ..+.+.++.++|...  +..       ....|+..+..+....+.. ..... .-.++++| .||+......+.++. .+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence            456677888877644  331       1235666664444333322 12233 66789995 688775433454444 22


Q ss_pred             C-cEEEeeccCC-c-c---ccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEE---EeCCCCeEEE---
Q 017317          146 G-VTVLASHVNG-S-R---INLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLK---YDPSLNETSI---  212 (373)
Q Consensus       146 g-~~~l~~~~~~-~-~---~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~~~~~~~---  212 (373)
                      + -++......+ . .   ...+..+.+.+|| +|.+...                   ++|+.   ...+.|..+.   
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeeccc
Confidence            2 2221111111 1 1   1257889999999 5655431                   34443   3333444332   


Q ss_pred             --eecCCCC-cceEEEccCCCEEEEEeC-CCCeEEEEEecCCC
Q 017317          213 --LLDSLFF-ANGVALSKDEDYLVVCET-FKFRCLKYWLKGES  251 (373)
Q Consensus       213 --~~~~~~~-~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~  251 (373)
                        +...+.. +..+.|..++. |++... .+..++++.++|..
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence              3333444 47788999988 566543 34568888887754

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.13  E-value=1.7  Score=43.19  Aligned_cols=67  Identities=6%  Similarity=0.031  Sum_probs=39.4

Q ss_pred             eEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCCc----------EEEeeccCCccccccceeEEcCCCcEE
Q 017317          108 WENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEGV----------TVLASHVNGSRINLADDLIAATDGSIY  174 (373)
Q Consensus       108 ~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g~----------~~l~~~~~~~~~~~~~~l~~~~dG~l~  174 (373)
                      ...+...+.+|+ |+.+++||+ +|++..- ..+-.+| .+..          ..+..+..  -...|-..++|.+|+.|
T Consensus       313 v~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~ay  389 (635)
T PRK02888        313 LTRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAY  389 (635)
T ss_pred             eEEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEE
Confidence            334444577899 999999997 5665432 2344555 2211          11111111  12357788999999999


Q ss_pred             EEe
Q 017317          175 FSV  177 (373)
Q Consensus       175 v~~  177 (373)
                      .+-
T Consensus       390 tsl  392 (635)
T PRK02888        390 TTL  392 (635)
T ss_pred             EeE
Confidence            873

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.05  E-value=2.8  Score=38.53  Aligned_cols=166  Identities=13%  Similarity=0.101  Sum_probs=90.2

Q ss_pred             cCCcceEEEec--CCCEEEEecCCeEEEEE--cCCceEEeee----ecCcccc--CeEECCCCcEEEEECCCcEEEEecC
Q 017317           76 LNGPEDVCVDR--NGVLYTATRDGWIKRLH--KNGTWENWKL----IGGDTLL--GITTTQENEILVCDADKGLLKVTEE  145 (373)
Q Consensus        76 ~~~P~~ia~d~--~G~l~v~~~~g~I~~~~--~~g~~~~~~~----~~~~p~~--gl~~d~~g~L~va~~~~gl~~~~~~  145 (373)
                      +.-|.|..+=|  +...+.-+.+|.+..+.  .+|+.+....    ....|..  ......++.+|..+..+.++..+-+
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence            55576654433  45566777899987666  5776543221    1122220  1122344567766665567777733


Q ss_pred             C--cEEEeec--------cCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317          146 G--VTVLASH--------VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (373)
Q Consensus       146 g--~~~l~~~--------~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  214 (373)
                      |  .+.....        ..+-.-.+-.-+++++ .++|||.-.....+.+        ..+.-.||.||.++++.....
T Consensus       214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH--------KdpgteVWv~D~~t~krv~Ri  285 (342)
T PF06433_consen  214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH--------KDPGTEVWVYDLKTHKRVARI  285 (342)
T ss_dssp             TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T--------TS-EEEEEEEETTTTEEEEEE
T ss_pred             CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc--------cCCceEEEEEECCCCeEEEEE
Confidence            3  3332211        0111112334477764 6799997432111111        112336999999988765443


Q ss_pred             cCCCCcceEEEccCCC-EEEEEeCCCCeEEEEEecC
Q 017317          215 DSLFFANGVALSKDED-YLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       215 ~~~~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~  249 (373)
                      ..-....+|+++.|.+ .||..+.....|..||...
T Consensus       286 ~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  286 PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            3223456899999887 5555666677899999653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.02  E-value=0.89  Score=42.10  Aligned_cols=125  Identities=11%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             cCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCC
Q 017317           95 RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATD  170 (373)
Q Consensus        95 ~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~d  170 (373)
                      .++.|..|| .....+......+... ++....+| .|..+.....+-.+| .+- +...+....-......+.+.|.|+
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence            455565565 3333332233345555 77777777 466665544455555 332 333332211111223567889998


Q ss_pred             CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC---cceEEEccCCCEEEEEeC
Q 017317          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF---ANGVALSKDEDYLVVCET  237 (373)
Q Consensus       171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~---~~gi~~~~dg~~l~v~~~  237 (373)
                      |....+.+                 .+|.||.++..+++.+........   -..++|++.|.+|+-++.
T Consensus       399 ~~YvaAGS-----------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  399 GSYVAAGS-----------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             Cceeeecc-----------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            87665543                 468999999999998876554333   356788898887777654

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.98  E-value=0.025  Score=30.04  Aligned_cols=17  Identities=29%  Similarity=0.530  Sum_probs=13.4

Q ss_pred             CCceeECCCCCEEEEEe
Q 017317          266 PDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       266 p~~i~~d~dG~lwva~~  282 (373)
                      ...++.|++|+||++|.
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            34588999999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=94.95  E-value=1.2  Score=41.10  Aligned_cols=142  Identities=17%  Similarity=0.183  Sum_probs=75.7

Q ss_pred             EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe-cCCcEEEeeccCCccccccceeEEc
Q 017317           92 TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEGVTVLASHVNGSRINLADDLIAA  168 (373)
Q Consensus        92 v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~~~  168 (373)
                      .+..++.|..++ .+|........+.... ++.+..||.++++... +.|..+| ..| +++... .+.....+....+-
T Consensus       149 sag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~-~~heG~k~~Raifl  225 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEG-VAHEGAKPARAIFL  225 (472)
T ss_pred             hccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCC-cEeeec-ccccCCCcceeEEe
Confidence            344566777777 4554322223445566 8999999998887543 4566666 455 222221 11111233344555


Q ss_pred             CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE---EccCCCEEEEEeCCCCeEEEE
Q 017317          169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA---LSKDEDYLVVCETFKFRCLKY  245 (373)
Q Consensus       169 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~---~~~dg~~l~v~~~~~~~i~~~  245 (373)
                      .+|.+ ++++-++..-             ..+-.+|+++-+.-.....+...+|+.   +++|.+.+|++.-++..|.-|
T Consensus       226 ~~g~i-~tTGfsr~se-------------Rq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy  291 (472)
T KOG0303|consen  226 ASGKI-FTTGFSRMSE-------------RQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF  291 (472)
T ss_pred             ccCce-eeeccccccc-------------cceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence            67774 3433222211             123334443222112222334456655   478999999999888877777


Q ss_pred             EecCC
Q 017317          246 WLKGE  250 (373)
Q Consensus       246 ~~~~~  250 (373)
                      .+..+
T Consensus       292 Eit~d  296 (472)
T KOG0303|consen  292 EITNE  296 (472)
T ss_pred             EecCC
Confidence            76544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=94.91  E-value=3.4  Score=38.91  Aligned_cols=27  Identities=7%  Similarity=-0.069  Sum_probs=21.9

Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~  247 (373)
                      .+...|||++.. +++....+.|..|+.
T Consensus       372 V~sAyFSPs~gt-l~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  372 VNSAYFSPSGGT-LLTTCQDNEIRVFDS  398 (498)
T ss_pred             eeeeEEcCCCCc-eEeeccCCceEEeec
Confidence            467789999886 777778889999985

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.80  E-value=0.048  Score=28.93  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=16.5

Q ss_pred             cccccceeEEcCCCcEEEEeC
Q 017317          158 RINLADDLIAATDGSIYFSVA  178 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~  178 (373)
                      +.+.+.+|..|++|+|||++.
T Consensus         3 ~~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    3 PNNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             SSSCEEEEEE-TTSCEEEEET
T ss_pred             CCCeEEEEEEcCCcCEEEEeC
Confidence            345788999999999999863

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=94.71  E-value=0.47  Score=43.79  Aligned_cols=172  Identities=14%  Similarity=0.242  Sum_probs=96.8

Q ss_pred             EEEecCC-CEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCC
Q 017317           82 VCVDRNG-VLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNG  156 (373)
Q Consensus        82 ia~d~~G-~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~  156 (373)
                      |...|+| +|.+|+..|..-.++... .++.+......++.++.+..+|.-.|.....|.+++- ++-  ++.+..    
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~a----  177 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQA----  177 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhH----
Confidence            4456664 577888888776664211 2222222223444378888888766665456777765 322  222211    


Q ss_pred             ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEE
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~  235 (373)
                      .....+.++++.|+...+++.+.                 .|.|...|..-.+-+ ++......+..+.+.|... |+++
T Consensus       178 hh~eaIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Lias  239 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIAS  239 (464)
T ss_pred             hhhhhhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEE
Confidence            12235789999999888888764                 466666665433333 2333345678899999976 7776


Q ss_pred             eCCCCeEEEEEecCCCCcceeEEecCCCCC---CCceeECCCCCEEEEE
Q 017317          236 ETFKFRCLKYWLKGESKEQTEIFVENLPGG---PDNIKLAPDGSFWIAI  281 (373)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~---p~~i~~d~dG~lwva~  281 (373)
                      ...++ +.++|  +++.+..  +. .+.++   .-.+.+.++|++..+.
T Consensus       240 gskDn-lVKlW--DprSg~c--l~-tlh~HKntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  240 GSKDN-LVKLW--DPRSGSC--LA-TLHGHKNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             ccCCc-eeEee--cCCCcch--hh-hhhhccceEEEEEEcCCCCeeEEc
Confidence            66565 66655  2232221  11 11222   2235567777655554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.69  E-value=0.15  Score=45.06  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=67.4

Q ss_pred             EEccCCCEEEEEeCC----CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHH
Q 017317          224 ALSKDEDYLVVCETF----KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATK  299 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~  299 (373)
                      .|++||++||.+|..    ++-|-.||... ...+...|.. -.-.|-.+..-.||+..+..+++.       ...|...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvgE~~t-~GiGpHev~lm~DGrtlvvanGGI-------ethpdfg  190 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVGEFST-HGIGPHEVTLMADGRTLVVANGGI-------ETHPDFG  190 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccc-ccceeccccc-CCcCcceeEEecCCcEEEEeCCce-------ecccccC
Confidence            489999999998753    34566787652 3333333321 112477888889999888877752       1111111


Q ss_pred             HHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeC
Q 017317          300 HLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSL  360 (373)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~  360 (373)
                      +.-.. ...++|        .++.++ .+|+.++...-|.......+.-+..+ +|++|+|..
T Consensus       191 R~~lN-ldsMeP--------Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         191 RTELN-LDSMEP--------SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ccccc-hhhcCc--------cEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            10000 011111        245566 78888776655544334456666654 689999863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=94.58  E-value=5.4  Score=39.63  Aligned_cols=206  Identities=11%  Similarity=0.052  Sum_probs=106.3

Q ss_pred             CCCEEEEecCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCccccccc
Q 017317           87 NGVLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLAD  163 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~  163 (373)
                      .|+|.+|..+..|.++..++.  ...+........ ++....++.+.-+..+..+..+.... ...    ..+.. ..+.
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD~TakvW~~~~l~~~----l~gH~-asVW  144 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWDSTAKVWRIGELVYS----LQGHT-ASVW  144 (745)
T ss_pred             CcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEecccccceEEecchhhhcc----cCCcc-hhee
Confidence            678999999999998875442  112222234455 88888888855555444333332111 111    12211 2355


Q ss_pred             eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEE
Q 017317          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCL  243 (373)
Q Consensus       164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~  243 (373)
                      +++.-+++ .|++.+.                 .-.|..+.. +...+.+........|+++-+++.++  +..+++.|.
T Consensus       145 Av~~l~e~-~~vTgsa-----------------DKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~fl--ScsNDg~Ir  203 (745)
T KOG0301|consen  145 AVASLPEN-TYVTGSA-----------------DKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFL--SCSNDGSIR  203 (745)
T ss_pred             eeeecCCC-cEEeccC-----------------cceeeeccC-CchhhhhccchhheeeeEEecCCCeE--eecCCceEE
Confidence            66666776 7777543                 122333332 22222333333445688888886533  333444555


Q ss_pred             EEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEE
Q 017317          244 KYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVN  323 (373)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~  323 (373)
                      +++++|+..-.   .. .-..+...+....++.+.+++...|                                   -++
T Consensus       204 ~w~~~ge~l~~---~~-ghtn~vYsis~~~~~~~Ivs~gEDr-----------------------------------tlr  244 (745)
T KOG0301|consen  204 LWDLDGEVLLE---MH-GHTNFVYSISMALSDGLIVSTGEDR-----------------------------------TLR  244 (745)
T ss_pred             EEeccCceeee---ee-ccceEEEEEEecCCCCeEEEecCCc-----------------------------------eEE
Confidence            55665542211   11 0111223344445666777776543                                   245


Q ss_pred             ECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCC
Q 017317          324 VAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNT  362 (373)
Q Consensus       324 ~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~  362 (373)
                      +...++..+.+.-|.-    .+.++..- +|.|++|+-.+
T Consensus       245 iW~~~e~~q~I~lPtt----siWsa~~L~NgDIvvg~SDG  280 (745)
T KOG0301|consen  245 IWKKDECVQVITLPTT----SIWSAKVLLNGDIVVGGSDG  280 (745)
T ss_pred             EeecCceEEEEecCcc----ceEEEEEeeCCCEEEeccCc
Confidence            5555677777766652    23444432 67777777533

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=94.58  E-value=1.2  Score=42.36  Aligned_cols=136  Identities=10%  Similarity=0.092  Sum_probs=73.1

Q ss_pred             CeEECCCCcEEEE-ECCCcEEEEe-cCCcEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCC
Q 017317          121 GITTTQENEILVC-DADKGLLKVT-EEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       121 gl~~d~~g~L~va-~~~~gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                      .|++.+|.++-++ -..+.|..+| .+-  .+.....|.. .....|.+.+|| +||-+.-                  .
T Consensus       514 ALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGht-DGascIdis~dGtklWTGGl------------------D  572 (705)
T KOG0639|consen  514 ALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHT-DGASCIDISKDGTKLWTGGL------------------D  572 (705)
T ss_pred             hhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCC-CCceeEEecCCCceeecCCC------------------c
Confidence            7788888887554 3334466677 433  2222233322 245678899999 6887643                  2


Q ss_pred             ceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC
Q 017317          198 GKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~  276 (373)
                      ..|.++|...++.- ....+ .....+...|.++++.|.= .++.+......++.  +...-.  .....-.+.+..-|.
T Consensus       573 ntvRcWDlregrql-qqhdF~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~--kyqlhl--heScVLSlKFa~cGk  646 (705)
T KOG0639|consen  573 NTVRCWDLREGRQL-QQHDFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPE--KYQLHL--HESCVLSLKFAYCGK  646 (705)
T ss_pred             cceeehhhhhhhhh-hhhhhhhhheecccCCCccceeeec-ccCcEEEEecCCcc--ceeecc--cccEEEEEEecccCc
Confidence            56777776544211 11111 1223455678888777653 34446655544321  111100  011223366788999


Q ss_pred             EEEEEec
Q 017317          277 FWIAILQ  283 (373)
Q Consensus       277 lwva~~~  283 (373)
                      .||.+..
T Consensus       647 wfvStGk  653 (705)
T KOG0639|consen  647 WFVSTGK  653 (705)
T ss_pred             eeeecCc
Confidence            9999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.54  E-value=1  Score=46.43  Aligned_cols=143  Identities=16%  Similarity=0.166  Sum_probs=83.0

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEEcC-----------C---ceEEe------eeecCccccCeEECCCCcEEEE-
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKN-----------G---TWENW------KLIGGDTLLGITTTQENEILVC-  133 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~-----------g---~~~~~------~~~~~~p~~gl~~d~~g~L~va-  133 (373)
                      ...-.++-+.+||..+ +|+.+.-|..+...           |   .++.+      ....+... .+++++++.+.+. 
T Consensus        69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSV  147 (942)
T ss_pred             cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEe
Confidence            3445566688888655 77777665555532           1   11111      12234456 8889998888775 


Q ss_pred             ECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317          134 DADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (373)
Q Consensus       134 ~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  210 (373)
                      ...+.++.++ .+.  .+++..+     ...+-++.+||-|+.+.+.+.                 ...|..++..+...
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i  205 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGI  205 (942)
T ss_pred             cccceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecC-----------------CceEEEEEccccee
Confidence            3346688887 333  3333221     235678999999998877654                 23444444333344


Q ss_pred             EEeecCC-C------CcceEEEccCCCEEEEEeCCCCe
Q 017317          211 SILLDSL-F------FANGVALSKDEDYLVVCETFKFR  241 (373)
Q Consensus       211 ~~~~~~~-~------~~~gi~~~~dg~~l~v~~~~~~~  241 (373)
                      +...... .      +-.-+.|+|||++|-..+..++.
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence            4333221 1      12357899999988877765543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=94.47  E-value=3.8  Score=37.48  Aligned_cols=146  Identities=10%  Similarity=0.028  Sum_probs=80.1

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEE-Ee-cCC-cEEEeec
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLK-VT-EEG-VTVLASH  153 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~-~~-~~g-~~~l~~~  153 (373)
                      -+++.+|+.++. .|..+..-+.++ .+|.+.. ......... .+.|..+|.+.+...-.|.++ +. .+| .+.... 
T Consensus        68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-  145 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-  145 (399)
T ss_pred             EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEee-
Confidence            346667755554 344555666666 4554221 111223345 778888888776532245444 44 455 332221 


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYL  232 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l  232 (373)
                         .....+.-|...|.+.+.++.+                 ..|.+|.+....+....+..+. ...+-=.|.|||+.+
T Consensus       146 ---~e~~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~  205 (399)
T KOG0296|consen  146 ---QEVEDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI  205 (399)
T ss_pred             ---cccCceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence               1112334566788888777644                 3578888876553333333332 223334578999966


Q ss_pred             EEEeCCCCeEEEEEec
Q 017317          233 VVCETFKFRCLKYWLK  248 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~  248 (373)
                      ..... +..|..++..
T Consensus       206 ~tgy~-dgti~~Wn~k  220 (399)
T KOG0296|consen  206 LTGYD-DGTIIVWNPK  220 (399)
T ss_pred             EEEec-CceEEEEecC
Confidence            66654 6677777754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=94.33  E-value=6.9  Score=39.81  Aligned_cols=143  Identities=11%  Similarity=0.076  Sum_probs=82.4

Q ss_pred             CccccCeEECCCCcE-EEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317          116 GDTLLGITTTQENEI-LVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (373)
Q Consensus       116 ~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~  192 (373)
                      .... +++++.=|++ +++...+.|-+++ ++| .+.-....+ .....+.+++.|.-+++.|+.+.             
T Consensus       449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~-ah~~~V~gla~D~~n~~~vsa~~-------------  513 (910)
T KOG1539|consen  449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP-AHKGEVTGLAVDGTNRLLVSAGA-------------  513 (910)
T ss_pred             cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc-cccCceeEEEecCCCceEEEccC-------------
Confidence            3445 7777777875 4555555578888 888 332211101 11235678999988899898754             


Q ss_pred             cccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC
Q 017317          193 EAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA  272 (373)
Q Consensus       193 ~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  272 (373)
                          .|-+-.+|-+++....-..-.....++..+.... +++.......|..||....+.-  +.|- .-......++++
T Consensus       514 ----~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvv--R~f~-gh~nritd~~FS  585 (910)
T KOG1539|consen  514 ----DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVV--REFW-GHGNRITDMTFS  585 (910)
T ss_pred             ----cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhh--HHhh-ccccceeeeEeC
Confidence                3445455544333222222234456666666655 6666666778888886543321  1121 112356778999


Q ss_pred             CCCCEEEEE
Q 017317          273 PDGSFWIAI  281 (373)
Q Consensus       273 ~dG~lwva~  281 (373)
                      +||+..+..
T Consensus       586 ~DgrWlisa  594 (910)
T KOG1539|consen  586 PDGRWLISA  594 (910)
T ss_pred             CCCcEEEEe
Confidence            999855443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.26  E-value=1.6  Score=40.92  Aligned_cols=100  Identities=21%  Similarity=0.417  Sum_probs=51.2

Q ss_pred             cceEEE--ec-CCCEE--EEecCCeEEEEE----cCCce--EEe--eeecCccccCeEEC-CCCcEEEEECCCcEEEEe-
Q 017317           79 PEDVCV--DR-NGVLY--TATRDGWIKRLH----KNGTW--ENW--KLIGGDTLLGITTT-QENEILVCDADKGLLKVT-  143 (373)
Q Consensus        79 P~~ia~--d~-~G~l~--v~~~~g~I~~~~----~~g~~--~~~--~~~~~~p~~gl~~d-~~g~L~va~~~~gl~~~~-  143 (373)
                      |++++.  ++ +|.+|  +...+|.+..+.    .+|.+  +.+  ......+- |+++| ..|.||+++...||++++ 
T Consensus       158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~y~A  236 (381)
T PF02333_consen  158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE-GCVVDDETGRLYVGEEDVGIWRYDA  236 (381)
T ss_dssp             EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE-EEEEETTTTEEEEEETTTEEEEEES
T ss_pred             ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce-EEEEecccCCEEEecCccEEEEEec
Confidence            455554  33 57777  445667764443    23432  111  12345677 88887 677899999999999999 


Q ss_pred             -cCC--cEEEeeccCCccc-cccceeEE--cCC--CcEEEEeCC
Q 017317          144 -EEG--VTVLASHVNGSRI-NLADDLIA--ATD--GSIYFSVAS  179 (373)
Q Consensus       144 -~~g--~~~l~~~~~~~~~-~~~~~l~~--~~d--G~l~v~~~~  179 (373)
                       +++  ...+.....+..+ .-+.+|++  ..+  |.|.+++.+
T Consensus       237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG  280 (381)
T PF02333_consen  237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG  280 (381)
T ss_dssp             SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred             CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence             333  3333322233222 23445554  334  456666543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.26  E-value=4.1  Score=41.02  Aligned_cols=146  Identities=14%  Similarity=0.066  Sum_probs=79.8

Q ss_pred             CeEECCCCcEEEEECCCcEEEEec--CC-cEEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccC
Q 017317          121 GITTTQENEILVCDADKGLLKVTE--EG-VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~~--~g-~~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      .|.+.+++-|.-+..++.+..++.  +. +..+..      ..++..++|.|- .+.+++.+-                 
T Consensus       374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSGSL-----------------  430 (712)
T KOG0283|consen  374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISGSL-----------------  430 (712)
T ss_pred             ecccccCCeeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeeccc-----------------
Confidence            667777766766655555544542  22 444432      247889999985 466666432                 


Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-c---CC-CCCCCceeE
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-E---NL-PGGPDNIKL  271 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~---~~-~g~p~~i~~  271 (373)
                      .|.+-.++....++....+--.....+++.|||++.+|. +.++.++.|+..+.++....... .   .. .....|+-+
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~  509 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF  509 (712)
T ss_pred             ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence            344444443334544333333456789999999966655 45566777776554332211111 0   00 112444444


Q ss_pred             CCCC--CEEEEEecCCCchhh
Q 017317          272 APDG--SFWIAILQLSSPGLE  290 (373)
Q Consensus       272 d~dG--~lwva~~~~~~~~~~  290 (373)
                      .+.-  .+.|++++.+..+.+
T Consensus       510 ~p~~~~~vLVTSnDSrIRI~d  530 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSRIRIYD  530 (712)
T ss_pred             cCCCCCeEEEecCCCceEEEe
Confidence            3211  588998887644433

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=94.07  E-value=3.1  Score=36.58  Aligned_cols=151  Identities=9%  Similarity=0.028  Sum_probs=85.4

Q ss_pred             CCcceEEEecC-CCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECC-----Cc-EEEEe-cCC-
Q 017317           77 NGPEDVCVDRN-GVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDAD-----KG-LLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~-G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-----~g-l~~~~-~~g-  146 (373)
                      ..-+++.+|.+ ..+..|+.+..+..|| ++|+..-....+.... .+-|+.+|++.++...     .+ +..++ ++. 
T Consensus        53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            34567777763 4455777888888888 7776544333333334 7778888887665322     12 33333 211 


Q ss_pred             -----cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCC
Q 017317          147 -----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFF  219 (373)
Q Consensus       147 -----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~  219 (373)
                           .+.+.. +. .+...++....++-|...|+..                 ..|.|-+||..+++..+-.  .....
T Consensus       132 ~~~~s~ep~~k-I~-t~~skit~a~Wg~l~~~ii~Gh-----------------e~G~is~~da~~g~~~v~s~~~h~~~  192 (327)
T KOG0643|consen  132 SDIDSEEPYLK-IP-TPDSKITSALWGPLGETIIAGH-----------------EDGSISIYDARTGKELVDSDEEHSSK  192 (327)
T ss_pred             hhhcccCceEE-ec-CCccceeeeeecccCCEEEEec-----------------CCCcEEEEEcccCceeeechhhhccc
Confidence                 111100 01 0112345556677776666543                 3588999998876433211  11234


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      -+.+.+++|.. .+++.+....-..+|..
T Consensus       193 Ind~q~s~d~T-~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  193 INDLQFSRDRT-YFITGSKDTTAKLVDVR  220 (327)
T ss_pred             cccccccCCcc-eEEecccCccceeeecc
Confidence            67899999987 67776666555555543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.03  E-value=2.9  Score=38.28  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             CCcceEEEecCC--CEEEEecCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEE
Q 017317           77 NGPEDVCVDRNG--VLYTATRDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G--~l~v~~~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l  150 (373)
                      .|-.++|-+|+.  .+..|+.+|.|..|+...+  ...+....|-.. ||+++....+++++. +.+-.+--+|  ...+
T Consensus        67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgdD-KtvK~wk~~~~p~~ti  144 (433)
T KOG0268|consen   67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGDD-KTVKQWKIDGPPLHTI  144 (433)
T ss_pred             cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecCC-cceeeeeccCCcceee
Confidence            445566666643  3457778999988884332  233333345556 999987445666653 3343332122  2221


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeecCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~~gi~~~~dg  229 (373)
                      ...      ....+|.-...++++.+.+                   ..|-.+|..- .-+..+..+...-..+.+.|-.
T Consensus       145 lg~------s~~~gIdh~~~~~~FaTcG-------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE  199 (433)
T KOG0268|consen  145 LGK------SVYLGIDHHRKNSVFATCG-------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE  199 (433)
T ss_pred             ecc------ccccccccccccccccccC-------------------ceeeecccccCCccceeecCCCceeEEecCCCc
Confidence            110      1122333333344544432                   1233344321 1122233344444567777877


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ..++.+...+..|+.||+.....-+ .+.   +...++.|+..+++..+++...
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~-KVi---~~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLK-KVI---LTMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             chheeeeccCCceEEEecccCCccc-eee---eeccccceecCccccceeeccc
Confidence            7788887778899999976432211 121   1235677888887766666543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=93.99  E-value=4  Score=35.91  Aligned_cols=155  Identities=14%  Similarity=0.139  Sum_probs=92.6

Q ss_pred             CCcCCcceEEEecC-CCEEE-EecCCeEEEEEcC-C-ceEEe---eeecCc-cccCeEECCCCcEEEE-ECCCcEEEEe-
Q 017317           74 GILNGPEDVCVDRN-GVLYT-ATRDGWIKRLHKN-G-TWENW---KLIGGD-TLLGITTTQENEILVC-DADKGLLKVT-  143 (373)
Q Consensus        74 g~~~~P~~ia~d~~-G~l~v-~~~~g~I~~~~~~-g-~~~~~---~~~~~~-p~~gl~~d~~g~L~va-~~~~gl~~~~-  143 (373)
                      |....-.++|..|. |.++. +..+..|..++.. + .++..   .....+ .. .+++.|.|++.++ .....+..+. 
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~La~aSFD~t~~Iw~k   90 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRYLASASFDATVVIWKK   90 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcEEEEeeccceEEEeec
Confidence            44445678888886 88664 4455566666543 2 22221   111223 34 8899999996554 3333333333 


Q ss_pred             cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe---ecCCCC
Q 017317          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL---LDSLFF  219 (373)
Q Consensus       144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~---~~~~~~  219 (373)
                      .++ ++.+.. ..|. .+.+-.+++.++|++..+.+..               ..--||.+|. ..+++..   .+..+.
T Consensus        91 ~~~efecv~~-lEGH-EnEVK~Vaws~sG~~LATCSRD---------------KSVWiWe~de-ddEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   91 EDGEFECVAT-LEGH-ENEVKCVAWSASGNYLATCSRD---------------KSVWIWEIDE-DDEFECIAVLQEHTQD  152 (312)
T ss_pred             CCCceeEEee-eecc-ccceeEEEEcCCCCEEEEeeCC---------------CeEEEEEecC-CCcEEEEeeecccccc
Confidence            455 666543 3432 2457789999999988887541               1123445552 3455532   233444


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      ...+.++|..+ |+++.+..+.|..|+-.
T Consensus       153 VK~V~WHPt~d-lL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  153 VKHVIWHPTED-LLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             ccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence            56889999887 88999999999888744

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.68  E-value=3.2  Score=42.77  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=76.9

Q ss_pred             cCCeEEEEE-cCCce-EEeeeecCccccCeEEC------CCCcEEEEECCCcEEEEe-c-CCcEEEeecc-CCccccccc
Q 017317           95 RDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTT------QENEILVCDADKGLLKVT-E-EGVTVLASHV-NGSRINLAD  163 (373)
Q Consensus        95 ~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d------~~g~L~va~~~~gl~~~~-~-~g~~~l~~~~-~~~~~~~~~  163 (373)
                      ....|+++| ..|++ +.|......++..++-+      ....-|++-..++++++| + .|-.++.... .-...+.-.
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            346788888 45653 33322111211133322      123578887778999999 3 3422221111 101122345


Q ss_pred             eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCeE
Q 017317          164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRC  242 (373)
Q Consensus       164 ~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i  242 (373)
                      +++.+.+|+|-|+...                  |.|-.||.-+.+....+.++..| .||.++.||++++.+..  .-|
T Consensus       582 ~~aTt~~G~iavgs~~------------------G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyL  641 (794)
T PF08553_consen  582 CFATTEDGYIAVGSNK------------------GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYL  641 (794)
T ss_pred             EEEecCCceEEEEeCC------------------CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceE
Confidence            7788899999998653                  77888886655555556666666 68999999997776643  345


Q ss_pred             EEEE
Q 017317          243 LKYW  246 (373)
Q Consensus       243 ~~~~  246 (373)
                      ..++
T Consensus       642 lLi~  645 (794)
T PF08553_consen  642 LLID  645 (794)
T ss_pred             EEEE
Confidence            5555

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=93.54  E-value=4.8  Score=35.29  Aligned_cols=178  Identities=14%  Similarity=0.175  Sum_probs=91.5

Q ss_pred             CcceEEEec-CCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCCcEEEee
Q 017317           78 GPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEGVTVLAS  152 (373)
Q Consensus        78 ~P~~ia~d~-~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g~~~l~~  152 (373)
                      .-+.++.++ ...++ +++.+..|.+++ ..++........+.-. .+.+.|+|+-. +++....|..+| .+- ++...
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~  143 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNE  143 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeeh
Confidence            456677776 44555 566777788888 5555443333333334 57778888644 445445566666 221 11111


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCce--EEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSILLDSLFFANGVALSKDED  230 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~  230 (373)
                      .   ......+.+...-++.++|.+.+                 .|.  |+.|- .-+.++.+.....+.-.|.|+|+|+
T Consensus       144 ~---~~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~Gr  202 (313)
T KOG1407|consen  144 E---QFKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGR  202 (313)
T ss_pred             h---cccceeeeeeecCCCCEEEEecC-----------------CceEEEEecc-ccccccccccCCcceEEEEECCCCc
Confidence            1   11235677788777888887643                 243  34442 2222222222223344688999998


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++-+.. ...-+..+|++.-  --.+.+. .+.--.+-+.+..||++.....
T Consensus       203 yfA~Gs-ADAlvSLWD~~EL--iC~R~is-RldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  203 YFATGS-ADALVSLWDVDEL--ICERCIS-RLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             eEeecc-ccceeeccChhHh--hhheeec-cccCceEEEEeccCcceeeccC
Confidence            554442 3334444444321  1112221 2222234567788887766543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=93.51  E-value=4.9  Score=35.26  Aligned_cols=214  Identities=11%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEEcCC-ceEEe---eeecCccccCeEECCCC-cEE-EEECCCcEEEEe-cCC-
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENW---KLIGGDTLLGITTTQEN-EIL-VCDADKGLLKVT-EEG-  146 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g-~~~~~---~~~~~~p~~gl~~d~~g-~L~-va~~~~gl~~~~-~~g-  146 (373)
                      ...-.+|+...+|.=. .|+.++.+..++.++ ++..-   ....+... .+++++.. .++ .+..++.+.++| ..+ 
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~~k   98 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRSGK   98 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEeccCc
Confidence            4556778888877655 566777777766332 22111   11112334 67777544 444 455556677788 555 


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                       ...+..  .+    .-.-++..|+|. +-+++-                  ...|--+|..+.+...-..-..+.|-++
T Consensus        99 ~~~~i~~--~~----eni~i~wsp~g~~~~~~~k------------------dD~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen   99 CTARIET--KG----ENINITWSPDGEYIAVGNK------------------DDRITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             EEEEeec--cC----cceEEEEcCCCCEEEEecC------------------cccEEEEEecccceeehhcccceeeeee
Confidence             222221  11    112457778774 444432                  2466677765444333233344567888


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCCCEEEE-EecCCCchhhhccCChHHHH
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDGSFWIA-ILQLSSPGLEFVHTSKATKH  300 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG~lwva-~~~~~~~~~~~~~~~p~~~~  300 (373)
                      +.-+++ +++.+++.+.|..+...  .+....    .+...|.|   |.+|++|+++.. ......++||.       ..
T Consensus       155 w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~----si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~-------~E  220 (313)
T KOG1407|consen  155 WNNSND-LFFLTNGLGCVEILSYP--SLKPVQ----SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV-------DE  220 (313)
T ss_pred             ecCCCC-EEEEecCCceEEEEecc--cccccc----ccccCCcceEEEEECCCCceEeeccccceeeccCh-------hH
Confidence            887776 88887777776655422  222211    22334444   668999986654 33344444443       22


Q ss_pred             HH-HhcchhhhhccCCCccEEEEEECCCCcEEEEE
Q 017317          301 LL-AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF  334 (373)
Q Consensus       301 ~~-~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~  334 (373)
                      ++ .+.-.++++.      ...+.|+-+|+.+.+-
T Consensus       221 LiC~R~isRldwp------VRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  221 LICERCISRLDWP------VRTLSFSHDGRMLASA  249 (313)
T ss_pred             hhhheeeccccCc------eEEEEeccCcceeecc
Confidence            22 1222222210      2346777788887753

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=93.50  E-value=2.6  Score=38.57  Aligned_cols=140  Identities=12%  Similarity=0.148  Sum_probs=81.0

Q ss_pred             EEEec-CCCEEEEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccC
Q 017317           82 VCVDR-NGVLYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVN  155 (373)
Q Consensus        82 ia~d~-~G~l~v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~  155 (373)
                      +...+ ++.++.++.++.|..+| ..|+. ........... .++.+|+..+++......+-.++ +.|  .+.+.    
T Consensus       283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nls----  357 (460)
T KOG0285|consen  283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNLS----  357 (460)
T ss_pred             EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhccc----
Confidence            44444 88999999999999999 55642 22222223345 77888887887765545566666 666  23221    


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---------ceEEEc
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---------NGVALS  226 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---------~gi~~~  226 (373)
                      + ....+|.|++..||.+..+.                  .+|.++.+|-+++-.-+.......|         ...+|+
T Consensus       358 g-h~~iintl~~nsD~v~~~G~------------------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD  418 (460)
T KOG0285|consen  358 G-HNAIINTLSVNSDGVLVSGG------------------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD  418 (460)
T ss_pred             c-ccceeeeeeeccCceEEEcC------------------CceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence            1 12246788888777665543                  3578888887655322111111111         234677


Q ss_pred             cCCCEEEEEeCCCCeEEEEE
Q 017317          227 KDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~  246 (373)
                      ..|..|+-++. +..|..|.
T Consensus       419 ktg~rlit~ea-dKtIk~~k  437 (460)
T KOG0285|consen  419 KTGSRLITGEA-DKTIKMYK  437 (460)
T ss_pred             ccCceEEeccC-CcceEEEe
Confidence            77776666654 33454444

>PHA02713 hypothetical protein; Provisional

Probab=93.47  E-value=4.4  Score=40.47  Aligned_cols=155  Identities=12%  Similarity=0.083  Sum_probs=72.1

Q ss_pred             CCCEEE-EecC------CeEEEEEc-CCceEEeeeec-CccccCeEECCCCcEEEEECCC------cEEEEe-cCC-cEE
Q 017317           87 NGVLYT-ATRD------GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDADK------GLLKVT-EEG-VTV  149 (373)
Q Consensus        87 ~G~l~v-~~~~------g~I~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~~------gl~~~~-~~g-~~~  149 (373)
                      +|.||+ |..+      ..+.++++ .+.+....... .+...+++. -+|+||+.....      .+.++| .+. .+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            788995 4322      34678884 34454433221 111113333 368999864321      256677 344 444


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccc---ccccccc--c-cccCCceEEEEeCCCCeEEEeecC--CCCcc
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGL---HNWGLDL--L-EAKPHGKLLKYDPSLNETSILLDS--LFFAN  221 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~---~~~~~~~--~-~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~  221 (373)
                      +..- +. +.... + +..-+|.||+..+......   ......+  . .......+.+|||.+.+++.+..-  .....
T Consensus       382 ~~~m-p~-~r~~~-~-~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~  457 (557)
T PHA02713        382 LPDM-PI-ALSSY-G-MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP  457 (557)
T ss_pred             CCCC-Cc-ccccc-c-EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence            3221 11 11111 2 2234789999754311000   0000000  0 001135699999999888765431  11122


Q ss_pred             eEEEccCCCEEEEEeCCC------CeEEEEEec
Q 017317          222 GVALSKDEDYLVVCETFK------FRCLKYWLK  248 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~------~~i~~~~~~  248 (373)
                      +++.. ++ .+|+....+      ..+.+||..
T Consensus       458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~  488 (557)
T PHA02713        458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTN  488 (557)
T ss_pred             cEEEE-CC-EEEEEeCCCCCCccceeEEEecCC
Confidence            33322 34 489885432      246788854

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.34  E-value=6.5  Score=37.31  Aligned_cols=140  Identities=14%  Similarity=0.067  Sum_probs=80.3

Q ss_pred             CcceEEEec-CCCEE-EEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCCcEEEeec
Q 017317           78 GPEDVCVDR-NGVLY-TATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLASH  153 (373)
Q Consensus        78 ~P~~ia~d~-~G~l~-v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g~~~l~~~  153 (373)
                      .-++.++.+ ++.+. .|+.+|.|..+|. .-.........+.|.-.+.+-+.|.+++.-.+..+-.+| -+|-+.+...
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~  234 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM  234 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh
Confidence            345566666 45455 7789999999982 211333344456665466777888888876555566667 4453333221


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYL  232 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l  232 (373)
                      ..  -...+..|....+++=.++.+                 -.+.+-.||..+-++.. ....+.| -.+++++|++.+
T Consensus       235 ~~--H~KtVTcL~l~s~~~rLlS~s-----------------LD~~VKVfd~t~~Kvv~-s~~~~~pvLsiavs~dd~t~  294 (487)
T KOG0310|consen  235 FN--HNKTVTCLRLASDSTRLLSGS-----------------LDRHVKVFDTTNYKVVH-SWKYPGPVLSIAVSPDDQTV  294 (487)
T ss_pred             hc--ccceEEEEEeecCCceEeecc-----------------cccceEEEEccceEEEE-eeecccceeeEEecCCCceE
Confidence            11  123567888888874334432                 23667777754333322 1122222 368899999877


Q ss_pred             EEEeC
Q 017317          233 VVCET  237 (373)
Q Consensus       233 ~v~~~  237 (373)
                      ++.-+
T Consensus       295 viGms  299 (487)
T KOG0310|consen  295 VIGMS  299 (487)
T ss_pred             EEecc
Confidence            76643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.21  E-value=9  Score=38.41  Aligned_cols=143  Identities=16%  Similarity=0.208  Sum_probs=74.6

Q ss_pred             CCCEE-EEecC------CeEEEEEc-CCceEEeeeecC-c-cccCeEECCCCcEEEEECCC------cEEEEec-CC-cE
Q 017317           87 NGVLY-TATRD------GWIKRLHK-NGTWENWKLIGG-D-TLLGITTTQENEILVCDADK------GLLKVTE-EG-VT  148 (373)
Q Consensus        87 ~G~l~-v~~~~------g~I~~~~~-~g~~~~~~~~~~-~-p~~gl~~d~~g~L~va~~~~------gl~~~~~-~g-~~  148 (373)
                      +|.|| +|..+      ..+.++|+ .+++...+.... + -. |++. -+|.||+.....      .+-++|+ +. .+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCccc
Confidence            67899 55544      34577774 345555433221 1 23 5554 368899864322      3556663 33 44


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALS  226 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~  226 (373)
                      ..+.-..   ...-.++ ..-+|.||+..+....           ...-..+.+|||.+++++....-  -..-.|++..
T Consensus       410 ~va~m~~---~r~~~gv-~~~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  410 PVAPMLT---RRSGHGV-AVLGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             ccCCCCc---ceeeeEE-EEECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence            4432111   0111122 2247999998653100           01235799999999988875432  1222344433


Q ss_pred             cCCCEEEEEeCCC-----CeEEEEEec
Q 017317          227 KDEDYLVVCETFK-----FRCLKYWLK  248 (373)
Q Consensus       227 ~dg~~l~v~~~~~-----~~i~~~~~~  248 (373)
                        ++.||+....+     ..+.+||..
T Consensus       475 --~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  475 --NGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             --CCEEEEECCccCCCccceEEEEcCC
Confidence              33588876533     236778744

>PHA02713 hypothetical protein; Provisional

Probab=93.13  E-value=10  Score=37.90  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             eEEEEE-cCCceEEeeeecCcc--ccCeEECCCCcEEEEECC-------CcEEEEe-cCC-cEEEeeccCCcccccccee
Q 017317           98 WIKRLH-KNGTWENWKLIGGDT--LLGITTTQENEILVCDAD-------KGLLKVT-EEG-VTVLASHVNGSRINLADDL  165 (373)
Q Consensus        98 ~I~~~~-~~g~~~~~~~~~~~p--~~gl~~d~~g~L~va~~~-------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l  165 (373)
                      .+.+++ ..+++......+...  . +.+. -++.|||....       ..+.++| .+. ...+..- .   ......-
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~---~~R~~~~  346 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINY-ASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-I---KNRCRFS  346 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccce-EEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-c---chhhcee
Confidence            456777 344555443322211  2 3333 36789986431       1266777 444 4433221 1   1111112


Q ss_pred             EEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEEEEEeC
Q 017317          166 IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVVCET  237 (373)
Q Consensus       166 ~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~  237 (373)
                      +..-+|.||+..+..            .......+.+||+.++++..+.. ...+   .+.+. -+| .+|+...
T Consensus       347 ~~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviGG  406 (557)
T PHA02713        347 LAVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIGG  406 (557)
T ss_pred             EEEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEeC
Confidence            233478999875431            00112468999999888776432 2221   12222 244 4888753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=93.07  E-value=8.1  Score=36.53  Aligned_cols=190  Identities=14%  Similarity=0.120  Sum_probs=97.1

Q ss_pred             ceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCc-EEEEe--------cCC-c
Q 017317           80 EDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT--------EEG-V  147 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~--------~~g-~  147 (373)
                      .+++.++.|...++. ..|.||.|. ..|..-.+....-++..-|.+..||..++.....| ++.+.        +++ .
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            346667788877655 889999998 67754322221122222677777887777644433 33332        111 1


Q ss_pred             EEEeeccCCccccccceeEEcCCC---cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          148 TVLASHVNGSRINLADDLIAATDG---SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG---~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                      ..+.. ..+.. ..+.++.++..|   ++|-+..                  ...+-.+|...+..-.-..-....+.++
T Consensus       165 ~p~~~-f~~Ht-lsITDl~ig~Gg~~~rl~TaS~------------------D~t~k~wdlS~g~LLlti~fp~si~av~  224 (476)
T KOG0646|consen  165 KPLHI-FSDHT-LSITDLQIGSGGTNARLYTASE------------------DRTIKLWDLSLGVLLLTITFPSSIKAVA  224 (476)
T ss_pred             cceee-eccCc-ceeEEEEecCCCccceEEEecC------------------CceEEEEEeccceeeEEEecCCcceeEE
Confidence            11110 11111 135566666543   4444322                  2344455555554322222234467899


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecC---CCC-----------cceeEEecCCC-CCCCceeECCCCCEEEEEe-cCCCch
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKG---ESK-----------EQTEIFVENLP-GGPDNIKLAPDGSFWIAIL-QLSSPG  288 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~---~~~-----------~~~~~~~~~~~-g~p~~i~~d~dG~lwva~~-~~~~~~  288 (373)
                      +||-++.+|+.. ..+.|+..++.+   ...           .+...+..... .-...+++.-||++.+... .+...+
T Consensus       225 lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  225 LDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCV  303 (476)
T ss_pred             EcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEE
Confidence            999999777775 456777766532   111           01111211111 1244578888998776543 343344


Q ss_pred             hh
Q 017317          289 LE  290 (373)
Q Consensus       289 ~~  290 (373)
                      |+
T Consensus       304 Wd  305 (476)
T KOG0646|consen  304 WD  305 (476)
T ss_pred             Ee
Confidence            44

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.02  E-value=3.1  Score=39.96  Aligned_cols=75  Identities=19%  Similarity=0.143  Sum_probs=48.2

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC
Q 017317          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG  275 (373)
                      .++++++.++++...+..-.......+|+|||+.+.++...+  ..|+.+++.+....+    ..+..+.-..=.+.+||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCC
Confidence            468999988887777665334445578999999999887654  457777777654222    22223333334456888


Q ss_pred             C
Q 017317          276 S  276 (373)
Q Consensus       276 ~  276 (373)
                      .
T Consensus       294 ~  294 (425)
T COG0823         294 S  294 (425)
T ss_pred             C
Confidence            5

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.02  E-value=2.8  Score=39.62  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCce
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW  108 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~  108 (373)
                      .+|..+-+..+|+-. +|...|-|-.+| .+++.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L  163 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL  163 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccccee
Confidence            678889888888755 788889998888 55543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=93.01  E-value=2.7  Score=43.60  Aligned_cols=98  Identities=15%  Similarity=0.048  Sum_probs=57.2

Q ss_pred             cceEEEecCCCEEE-EecCCeEEEEE-cCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe---cCC-cEEEe
Q 017317           79 PEDVCVDRNGVLYT-ATRDGWIKRLH-KNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT---EEG-VTVLA  151 (373)
Q Consensus        79 P~~ia~d~~G~l~v-~~~~g~I~~~~-~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~---~~g-~~~l~  151 (373)
                      -.++..+|++.+.+ .+.++.|+.++ ... ..+++....+.+. |+.+||-|+.+......+.+++-   .-| .+.+.
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It  210 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT  210 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEeec
Confidence            34577788888875 44788999998 332 2334444455667 99999999988875554444433   234 23222


Q ss_pred             eccCC-ccccccceeEEcCCCcEEEEe
Q 017317          152 SHVNG-SRINLADDLIAATDGSIYFSV  177 (373)
Q Consensus       152 ~~~~~-~~~~~~~~l~~~~dG~l~v~~  177 (373)
                      ..... ..-.+...+...|||....+.
T Consensus       211 ~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  211 KPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             cchhhCCCcceeeecccCCCcCeecch
Confidence            21111 111233456677888766653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.00  E-value=8.5  Score=36.58  Aligned_cols=144  Identities=16%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             CeEECCCCcEEEEECCCcEEEE-e-cCC--cEEEeeccCCccccccceeEEcCCC-cEEEEeCCcccccccccccccccc
Q 017317          121 GITTTQENEILVCDADKGLLKV-T-EEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAK  195 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~-~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~  195 (373)
                      ++.|-.||+|..|....|.+++ | .+.  ++.+...     ...++-+.+.+++ .++++.+.                
T Consensus        73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----~apv~~~~f~~~d~t~l~s~sD----------------  131 (487)
T KOG0310|consen   73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----QAPVHVTKFSPQDNTMLVSGSD----------------  131 (487)
T ss_pred             EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-----cCceeEEEecccCCeEEEecCC----------------
Confidence            8888899999987545565554 4 332  2222111     1123445666665 45554332                


Q ss_pred             CCceEEE-EeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCC-CceeEC
Q 017317          196 PHGKLLK-YDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP-DNIKLA  272 (373)
Q Consensus       196 ~~g~l~~-~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p-~~i~~d  272 (373)
                        .++.+ +|.++..++.-..+ -..-...+++|..++++++...++.|..||.....   .++. +-..|.| ..+..=
T Consensus       132 --d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~-elnhg~pVe~vl~l  205 (487)
T KOG0310|consen  132 --DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVV-ELNHGCPVESVLAL  205 (487)
T ss_pred             --CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeE-EecCCCceeeEEEc
Confidence              33333 44454443211111 12234567888888899999999999999854322   1111 1223433 556666


Q ss_pred             CCCCEEEEEecCCCchhhh
Q 017317          273 PDGSFWIAILQLSSPGLEF  291 (373)
Q Consensus       273 ~dG~lwva~~~~~~~~~~~  291 (373)
                      +.|.+.++..++....||.
T Consensus       206 psgs~iasAgGn~vkVWDl  224 (487)
T KOG0310|consen  206 PSGSLIASAGGNSVKVWDL  224 (487)
T ss_pred             CCCCEEEEcCCCeEEEEEe
Confidence            7888877766653344443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.96  E-value=0.56  Score=28.29  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=28.4

Q ss_pred             CC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEc
Q 017317          170 DG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (373)
Q Consensus       170 dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~  226 (373)
                      +| +||+++..                 .+.|..+|..+++..........|.+++++
T Consensus         2 d~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            44 69998753                 468999998877665544445778888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=92.92  E-value=1.9  Score=42.61  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=43.5

Q ss_pred             ccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEe
Q 017317          159 INLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       159 ~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~  236 (373)
                      .+.++++++.|||. +.++..                   .+++.||+..|..- .+...-...+-++++.||+ ++.+.
T Consensus        12 ~hci~d~afkPDGsqL~lAAg-------------------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG   71 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAAG-------------------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG   71 (1081)
T ss_pred             ccchheeEECCCCceEEEecC-------------------CEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence            45789999999995 666543                   48999999866533 3333334457899999998 66555


Q ss_pred             CCCCeEE
Q 017317          237 TFKFRCL  243 (373)
Q Consensus       237 ~~~~~i~  243 (373)
                      ..+..+.
T Consensus        72 ~aDK~VI   78 (1081)
T KOG1538|consen   72 SADKSVI   78 (1081)
T ss_pred             CCceeEE
Confidence            4443333

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.78  E-value=4.2  Score=34.52  Aligned_cols=150  Identities=17%  Similarity=0.126  Sum_probs=84.4

Q ss_pred             cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE---eecCCCCcceEEEccCCCEEEEEeCC
Q 017317          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      ..++..+ +|.++.+++.  |             +...|.++|..+++...   +.....+..|+.-.  |+.+|.-...
T Consensus        48 TQGL~~~-~g~i~esTG~--y-------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~  109 (262)
T COG3823          48 TQGLEYL-DGHILESTGL--Y-------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWK  109 (262)
T ss_pred             hcceeee-CCEEEEeccc--c-------------ccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEec
Confidence            3455554 5688888654  2             23578888888776543   22123344566544  4568888777


Q ss_pred             CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317          239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK  318 (373)
Q Consensus       239 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  318 (373)
                      ...-++||.+.-  .....+.  .+|--.+++.|.+ +||++....                                  
T Consensus       110 egvaf~~d~~t~--~~lg~~~--y~GeGWgLt~d~~-~LimsdGsa----------------------------------  150 (262)
T COG3823         110 EGVAFKYDADTL--EELGRFS--YEGEGWGLTSDDK-NLIMSDGSA----------------------------------  150 (262)
T ss_pred             cceeEEEChHHh--hhhcccc--cCCcceeeecCCc-ceEeeCCce----------------------------------
Confidence            777778875432  2222221  2333456666533 688886443                                  


Q ss_pred             EEEEEECCC-----CcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          319 AAVVNVAAN-----GIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       319 g~v~~~~~~-----g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                       .+...||+     +++...   .+|.+......+...+|.||..-+-.++|.|+++++
T Consensus       151 -tL~frdP~tfa~~~~v~VT---~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         151 -TLQFRDPKTFAELDTVQVT---DDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             -EEEecCHHHhhhcceEEEE---ECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence             12222332     222221   234444445556666788888777888899988764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=92.74  E-value=7.9  Score=35.54  Aligned_cols=68  Identities=9%  Similarity=-0.054  Sum_probs=38.9

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcE-EEEECCCcEEEEe-cCC
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEI-LVCDADKGLLKVT-EEG  146 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g  146 (373)
                      -+-+...|.+.++ +|+.+|.++.+. +++....+....+.+...=.+-++|+. ..+.....|..++ .+|
T Consensus       151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             eEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC
Confidence            3446666766666 778899999888 443333333223333212234578864 4454444566777 677

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=92.73  E-value=6.4  Score=38.11  Aligned_cols=132  Identities=11%  Similarity=0.089  Sum_probs=71.8

Q ss_pred             eEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECC---CcEEEEecCCcEEEeeccCCccccccceeEEcCCCcEE
Q 017317           98 WIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD---KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIY  174 (373)
Q Consensus        98 ~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~---~gl~~~~~~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~  174 (373)
                      .++.++.+|.-..+......|+....+.++|+=+.+.++   ..+-.+|..+ .++.+...|    .-|.+.+.|.|+|.
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~eg----pRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEG----PRNTAFFNPHGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCC----CccceEECCCCCEE
Confidence            455565445443343333444448888888865544332   2344454333 122222222    23678899999876


Q ss_pred             EEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeCC-----CCeEEEEEec
Q 017317          175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETF-----KFRCLKYWLK  248 (373)
Q Consensus       175 v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~  248 (373)
                      +-.+-              ++-.|.+-.+|..+.+  .+. -......-..|+|||++++.+.+.     ++++..|+..
T Consensus       327 ~lAGF--------------GNL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  327 LLAGF--------------GNLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EEeec--------------CCCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            54331              1234667777765422  111 112344567899999999988875     3445556555


Q ss_pred             CC
Q 017317          249 GE  250 (373)
Q Consensus       249 ~~  250 (373)
                      |.
T Consensus       391 G~  392 (566)
T KOG2315|consen  391 GS  392 (566)
T ss_pred             Cc
Confidence            64

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=92.46  E-value=8.8  Score=35.43  Aligned_cols=153  Identities=14%  Similarity=0.196  Sum_probs=98.7

Q ss_pred             CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCC---ceEEee----------------------eecCccccCeEECC
Q 017317           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNG---TWENWK----------------------LIGGDTLLGITTTQ  126 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g---~~~~~~----------------------~~~~~p~~gl~~d~  126 (373)
                      |--..-++|.++++|..+ .|+.+..|-.++ ...   ..+...                      .....++..+.+.+
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            444567889999988887 577888777666 110   011000                      00011222667777


Q ss_pred             CCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE
Q 017317          127 ENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (373)
Q Consensus       127 ~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~  203 (373)
                      .+.+|-+...+.|..+| ..|  ...+...      ...+.+...+.-++.++.++                 ...+..+
T Consensus       271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~  327 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLW  327 (423)
T ss_pred             CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeec
Confidence            77889888888899999 655  3333221      23567777777778777554                 2346678


Q ss_pred             eCCCCeEEE----eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          204 DPSLNETSI----LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       204 d~~~~~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ||.++.-..    +........++.++|...+++++-+.++.+..+|+..
T Consensus       328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS  377 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS  377 (423)
T ss_pred             CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence            988764332    2233345678999999999999999999888888654

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=92.45  E-value=0.49  Score=28.94  Aligned_cols=40  Identities=10%  Similarity=0.021  Sum_probs=29.9

Q ss_pred             EEEEEeCCCC-eEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317          231 YLVVCETFKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (373)
Q Consensus       231 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  273 (373)
                      .|||++.... .|.+-+++|..   .+.+....-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence            5999999999 99999988753   3344434445799999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=92.35  E-value=6.2  Score=38.44  Aligned_cols=113  Identities=19%  Similarity=0.318  Sum_probs=63.8

Q ss_pred             EEEec-CCCEEEEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEEECCCcEE-EEe-cCC--cEEEe--e
Q 017317           82 VCVDR-NGVLYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGLL-KVT-EEG--VTVLA--S  152 (373)
Q Consensus        82 ia~d~-~G~l~v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~-~~~-~~g--~~~l~--~  152 (373)
                      +.++. .=.||++.....|+|++ ..|++- .+....+..+ .+.+.+-..|+++....|.+ .+| .+.  ...+-  .
T Consensus       139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             ccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            44443 55788766677899999 556643 2322223334 55555555666664444544 455 332  22221  1


Q ss_pred             c----cCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317          153 H----VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (373)
Q Consensus       153 ~----~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  213 (373)
                      .    ..+.....+.++.+..+| .+=|+++                  .|.++.||..+.+.-.+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts------------------~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------------------TGSVLIYDLRASKPLLV  265 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeecc------------------CCcEEEEEcccCCceee
Confidence            1    122233457788888777 5666654                  48999999876654443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.24  E-value=8.5  Score=34.75  Aligned_cols=31  Identities=13%  Similarity=0.052  Sum_probs=24.0

Q ss_pred             CCcCCcceEEEecCCCEEEEe-cCCeEEEEEc
Q 017317           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHK  104 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~  104 (373)
                      ..+..|++|++.|.|-+||++ ..+..-.++.
T Consensus        20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg   51 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVG   51 (336)
T ss_pred             ccccccceeEecCCCCEEEecCCcceEEeecC
Confidence            348899999999999999877 4455556663

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=92.06  E-value=2.3  Score=41.82  Aligned_cols=145  Identities=19%  Similarity=0.157  Sum_probs=80.0

Q ss_pred             ceEEEec--CCCEEEEecCCeEEEEE--cCCce------EEee-eecCccccCeEECCCC--cEEEEECCCcEEEEe-cC
Q 017317           80 EDVCVDR--NGVLYTATRDGWIKRLH--KNGTW------ENWK-LIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EE  145 (373)
Q Consensus        80 ~~ia~d~--~G~l~v~~~~g~I~~~~--~~g~~------~~~~-~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~-~~  145 (373)
                      .++..||  +.+|-|++.+|.|..+.  .+|-.      +.+. ....... .|.|++-.  -|-++.++..|-.+| .+
T Consensus       631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhh
Confidence            4456666  55777888888775554  34421      1111 1122344 77776532  355566555666677 55


Q ss_pred             C--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC---CCc
Q 017317          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL---FFA  220 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---~~~  220 (373)
                      +  ...+..+.     ..+.+++..+||+...+...                 .|+|..|+|..+.........   ...
T Consensus       710 ~~~~~~l~gHt-----dqIf~~AWSpdGr~~AtVcK-----------------Dg~~rVy~Prs~e~pv~Eg~gpvgtRg  767 (1012)
T KOG1445|consen  710 AKLYSRLVGHT-----DQIFGIAWSPDGRRIATVCK-----------------DGTLRVYEPRSREQPVYEGKGPVGTRG  767 (1012)
T ss_pred             hhhhheeccCc-----CceeEEEECCCCcceeeeec-----------------CceEEEeCCCCCCCccccCCCCccCcc
Confidence            4  22222211     24678999999988776543                 589999999865433322211   111


Q ss_pred             ceEEEccCCCEEEEEeCCC---CeEEEEEe
Q 017317          221 NGVALSKDEDYLVVCETFK---FRCLKYWL  247 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~---~~i~~~~~  247 (373)
                      .-|.|.-||+.++++....   ..|..|+.
T Consensus       768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             eeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            2366777877666654322   23455553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=91.96  E-value=8.8  Score=34.41  Aligned_cols=134  Identities=11%  Similarity=0.062  Sum_probs=78.9

Q ss_pred             CeEECCC-CcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317          121 GITTTQE-NEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       121 gl~~d~~-g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                      .+.+++. +.|.|+...+.+..++ +.- .......  +   ..+-+.++.++-.+|+++..                  
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~---~plL~c~F~d~~~~~~G~~d------------------   74 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--G---APLLDCAFADESTIVTGGLD------------------   74 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--C---CceeeeeccCCceEEEeccC------------------
Confidence            5666644 4677877655555565 322 2221111  1   12346677777788888653                  


Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-
Q 017317          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-  276 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-  276 (373)
                      |.|.++|..++....+.........|...+-.+ .+++..++.+|..+|.....    .......+  -.-.++|..|+ 
T Consensus        75 g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~----~~~~~d~~--kkVy~~~v~g~~  147 (323)
T KOG1036|consen   75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV----VVGTFDQG--KKVYCMDVSGNR  147 (323)
T ss_pred             ceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc----cccccccC--ceEEEEeccCCE
Confidence            789999998887777665555556677775554 78888888888888754310    01110111  12356677675 


Q ss_pred             EEEEEecC
Q 017317          277 FWIAILQL  284 (373)
Q Consensus       277 lwva~~~~  284 (373)
                      |.|++.+.
T Consensus       148 LvVg~~~r  155 (323)
T KOG1036|consen  148 LVVGTSDR  155 (323)
T ss_pred             EEEeecCc
Confidence            66666654

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=91.86  E-value=0.9  Score=27.77  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=29.7

Q ss_pred             CcEEEEeCCccccccccccccccccCCc-eEEEEeCCCCeEE-EeecCCCCcceEEEcc
Q 017317          171 GSIYFSVASTKFGLHNWGLDLLEAKPHG-KLLKYDPSLNETS-ILLDSLFFANGVALSK  227 (373)
Q Consensus       171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~  227 (373)
                      |+||.+|.+                 .. .|.+.+.++...+ .+...+..|+||++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            578999875                 24 7888887766544 4566799999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.83  E-value=18  Score=37.60  Aligned_cols=123  Identities=11%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEE-eee--------e-cCcc------ccCeEECCCCcEEEEEC----------CCcE
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWEN-WKL--------I-GGDT------LLGITTTQENEILVCDA----------DKGL  139 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~-~~~--------~-~~~p------~~gl~~d~~g~L~va~~----------~~gl  139 (373)
                      +++||+++.+++++.+| .+|+... +..        . ...+      ...-.+ .++.++++..          ...|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence            45899999999999999 6676432 110        0 0001      101122 2567888632          1236


Q ss_pred             EEEe-cCC-cEEEeecc---------CCccc--ccc---ceeEEcCC-CcEEEEeCCcccccccccc---ccccccCCce
Q 017317          140 LKVT-EEG-VTVLASHV---------NGSRI--NLA---DDLIAATD-GSIYFSVASTKFGLHNWGL---DLLEAKPHGK  199 (373)
Q Consensus       140 ~~~~-~~g-~~~l~~~~---------~~~~~--~~~---~~l~~~~d-G~l~v~~~~~~~~~~~~~~---~~~~~~~~g~  199 (373)
                      ..+| .+| ...-....         .+...  ..+   ..++.|++ |.+|+..++..   .++..   ........+.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~---pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQT---PDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCcc---ccccCCccccCcccccce
Confidence            6788 778 43322210         11000  111   34677865 67888654311   11110   1112334678


Q ss_pred             EEEEeCCCCeEEEe
Q 017317          200 LLKYDPSLNETSIL  213 (373)
Q Consensus       200 l~~~d~~~~~~~~~  213 (373)
                      |+.+|.+||+....
T Consensus       416 lvALD~~TGk~~W~  429 (764)
T TIGR03074       416 LVALDATTGKERWV  429 (764)
T ss_pred             EEEEeCCCCceEEE
Confidence            99999999987643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=91.81  E-value=10  Score=36.39  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=48.5

Q ss_pred             cceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          162 ADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       162 ~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                      ..+|++.|.. .|+++.+.                 .-+|+.||....+....+.--..-..++|.++|. .+++.+.++
T Consensus       211 ~~gicfspsne~l~vsVG~-----------------Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~-~L~aG~s~G  272 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGY-----------------DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT-YLCAGNSKG  272 (673)
T ss_pred             cCcceecCCccceEEEecc-----------------cceEEEeecccccccceeeecCCcceeeecCCce-EEEeecCCc
Confidence            4678999876 56666543                 3579999976444322222112235799999997 666667788


Q ss_pred             eEEEEEecCCC
Q 017317          241 RCLKYWLKGES  251 (373)
Q Consensus       241 ~i~~~~~~~~~  251 (373)
                      +|+.||+.+.+
T Consensus       273 ~~i~YD~R~~k  283 (673)
T KOG4378|consen  273 ELIAYDMRSTK  283 (673)
T ss_pred             eEEEEecccCC
Confidence            99999987653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.56  E-value=16  Score=36.48  Aligned_cols=55  Identities=9%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             CcceEEEecCCCEEEEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEE
Q 017317           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVC  133 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va  133 (373)
                      .-..+++.|||.-.+-..+.+++.+| .+|. ..+......... .+++..||+++..
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFAS   70 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFAS   70 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceecc
Confidence            45678999988766555677899999 4553 233222223344 6778888888765

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=91.55  E-value=3.4  Score=40.68  Aligned_cols=119  Identities=15%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             cCccccCeEECCCCcEEEEECCCcEEE-Eec-CCcEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317          115 GGDTLLGITTTQENEILVCDADKGLLK-VTE-EGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (373)
Q Consensus       115 ~~~p~~gl~~d~~g~L~va~~~~gl~~-~~~-~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~  192 (373)
                      .+... ++++.++|++....-..|-++ +.+ ++.+.+.... |.....-..|.+.-||++.+..+-.+           
T Consensus       720 tdqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~-gpvgtRgARi~wacdgr~viv~Gfdk-----------  786 (1012)
T KOG1445|consen  720 TDQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK-GPVGTRGARILWACDGRIVIVVGFDK-----------  786 (1012)
T ss_pred             cCcee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccCC-CCccCcceeEEEEecCcEEEEecccc-----------
Confidence            34567 999999998875533344444 443 4433333221 11112233566777887766543210           


Q ss_pred             cccCCceEEEEeCCCCeEE----EeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          193 EAKPHGKLLKYDPSLNETS----ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       193 ~~~~~g~l~~~d~~~~~~~----~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                        .....|..||.++-...    ..++.-..+---.+++|.+.|+++.-++..|+.|.+-
T Consensus       787 --~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  787 --SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             --cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence              11123445554322111    1111112222234678888899998888899999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=91.55  E-value=9.3  Score=33.74  Aligned_cols=148  Identities=17%  Similarity=0.191  Sum_probs=87.6

Q ss_pred             EeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee---cCccccCeEECCCCcEEE-EECCCcEEEEe
Q 017317           70 RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI---GGDTLLGITTTQENEILV-CDADKGLLKVT  143 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~---~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~  143 (373)
                      .+.++--..-+++|..|.|++. .++.+..+..+. .++.++.....   .+... ++++.++|++.. |...+.++.+.
T Consensus        55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEE
Confidence            3344445667889999989866 566788777776 45677665432   23345 899999998765 46666676665


Q ss_pred             --cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeC-CCCeEEEeecCCC-
Q 017317          144 --EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP-SLNETSILLDSLF-  218 (373)
Q Consensus       144 --~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~~~~~~~~~~~~~-  218 (373)
                        +++ ++...- ..+ ...-+-.+...|.-.|.|+.++.               .+-++|+-++ +..+....+++.. 
T Consensus       134 ~deddEfec~aV-L~~-HtqDVK~V~WHPt~dlL~S~SYD---------------nTIk~~~~~~dddW~c~~tl~g~~~  196 (312)
T KOG0645|consen  134 IDEDDEFECIAV-LQE-HTQDVKHVIWHPTEDLLFSCSYD---------------NTIKVYRDEDDDDWECVQTLDGHEN  196 (312)
T ss_pred             ecCCCcEEEEee-ecc-ccccccEEEEcCCcceeEEeccC---------------CeEEEEeecCCCCeeEEEEecCccc
Confidence              334 444321 111 11234567788887888887651               2345666653 2223333333322 


Q ss_pred             CcceEEEccCCCEEEEE
Q 017317          219 FANGVALSKDEDYLVVC  235 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~  235 (373)
                      .-=.++|++.|..|.-+
T Consensus       197 TVW~~~F~~~G~rl~s~  213 (312)
T KOG0645|consen  197 TVWSLAFDNIGSRLVSC  213 (312)
T ss_pred             eEEEEEecCCCceEEEe
Confidence            22368889998754444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=91.42  E-value=6.1  Score=35.73  Aligned_cols=149  Identities=11%  Similarity=0.026  Sum_probs=80.7

Q ss_pred             EEecCCCEEEEe-cCCeEEEEE-cCCceEEee------eecCccccCeEECCCCcEEEEECCCcEEEEe--cCC--cEEE
Q 017317           83 CVDRNGVLYTAT-RDGWIKRLH-KNGTWENWK------LIGGDTLLGITTTQENEILVCDADKGLLKVT--EEG--VTVL  150 (373)
Q Consensus        83 a~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~------~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~--~~g--~~~l  150 (373)
                      ..+|+-.+|..+ .+.-|..+| -+|+.+.-.      +.....+ ++.|.+||.-.+|.....|..++  +.|  ....
T Consensus       118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcch
Confidence            345677788544 667788888 466543211      1122356 89999999755555456666677  445  3333


Q ss_pred             eeccCCc--cccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc
Q 017317          151 ASHVNGS--RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK  227 (373)
Q Consensus       151 ~~~~~~~--~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~  227 (373)
                      .+...+.  ...-+..+++.|-. ..+...+.   +            ..-+||+-+.. +-...+........-+.+.+
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY---~------------q~~giy~~~~~-~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY---G------------QRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeecc---c------------ceeeeEecCCC-CceeeecccCCCeeeEEecc
Confidence            2222211  11234456777643 23322221   1            11234444421 11222222222334467899


Q ss_pred             CCCEEEEEeCCCCeEEEEEec
Q 017317          228 DEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      ||+.||....-...|..+|+.
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             CcCeecccccCCCeEEEEeeh
Confidence            999999998888899999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=91.34  E-value=11  Score=34.14  Aligned_cols=61  Identities=16%  Similarity=0.071  Sum_probs=37.9

Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEec-CCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLK-GESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ..|--++++|.|+.|-++.  ...+..|... |+.....+..   -.+-..+|..+++|++.+++..
T Consensus       332 ~~p~RL~lsP~g~~lA~s~--gs~l~~~~se~g~~~~~~e~~---h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  332 SEPVRLELSPSGDSLAVSF--GSDLKVFASEDGKDYPELEDI---HSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCceEEEeCCCCcEEEeec--CCceEEEEcccCccchhHHHh---hcCceeeEEecCCCcEEeeecc
Confidence            4566899999999655553  3457777643 2222222211   1235678999999988777643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=91.25  E-value=16  Score=35.93  Aligned_cols=94  Identities=13%  Similarity=0.103  Sum_probs=51.7

Q ss_pred             CceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC
Q 017317          197 HGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG  275 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG  275 (373)
                      +-+|+.+.....+.+..+ ..-..+..+.|.|..-+++|+..  +.|..|++..+.+.+  ... ......+.+++.+.|
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvK--kL~-tg~kwiS~msihp~G  619 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVK--KLL-TGSKWISSMSIHPNG  619 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHH--HHh-cCCeeeeeeeecCCC
Confidence            345665554422222111 11234567889999888999964  457778764321111  000 001124567787777


Q ss_pred             -CEEEEEecCCCchhhhccCC
Q 017317          276 -SFWIAILQLSSPGLEFVHTS  295 (373)
Q Consensus       276 -~lwva~~~~~~~~~~~~~~~  295 (373)
                       ||.+++...+-.+.|....+
T Consensus       620 Dnli~gs~d~k~~WfDldlss  640 (733)
T KOG0650|consen  620 DNLILGSYDKKMCWFDLDLSS  640 (733)
T ss_pred             CeEEEecCCCeeEEEEcccCc
Confidence             78888887766665554443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.18  E-value=21  Score=37.12  Aligned_cols=59  Identities=17%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecCc---------cccCeEEC-----------------CCCcEEEEECCCcE
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGD---------TLLGITTT-----------------QENEILVCDADKGL  139 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~---------p~~gl~~d-----------------~~g~L~va~~~~gl  139 (373)
                      +|.||+++.++.|+.+| .+|+..-..+....         .. |+++.                 .++++|+++.+..|
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            78999999999999999 56753211111000         11 22221                 23478888777778


Q ss_pred             EEEe-cCC
Q 017317          140 LKVT-EEG  146 (373)
Q Consensus       140 ~~~~-~~g  146 (373)
                      +.+| ++|
T Consensus       273 iALDA~TG  280 (764)
T TIGR03074       273 IALDADTG  280 (764)
T ss_pred             EEEECCCC
Confidence            9999 777

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.03  E-value=1.5  Score=26.26  Aligned_cols=42  Identities=12%  Similarity=0.010  Sum_probs=28.0

Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA  272 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  272 (373)
                      ||++++|+++...+.|..++....+  .... . .....|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~-i-~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK--VIAT-I-PVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe--EEEE-E-ECCCCCceEEeC
Confidence            5788999999999999999864321  1111 2 123468887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.02  E-value=12  Score=35.51  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=46.4

Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEeCC
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .+++|++-+.-.|..+.+.               .+.-+||.+...-.+.+.+.  .-..+.|.++|+.+|+++++.-..
T Consensus       382 Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGk  446 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGK  446 (479)
T ss_pred             ceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccc
Confidence            5666777666566665442               23346787765433333321  223456899999999988888777


Q ss_pred             CCeEEEEEe
Q 017317          239 KFRCLKYWL  247 (373)
Q Consensus       239 ~~~i~~~~~  247 (373)
                      .+++-|++.
T Consensus       447 EhRlGRW~~  455 (479)
T KOG0299|consen  447 EHRLGRWWC  455 (479)
T ss_pred             ccccceeeE
Confidence            788888774

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.75  E-value=12  Score=33.59  Aligned_cols=180  Identities=14%  Similarity=0.127  Sum_probs=94.3

Q ss_pred             ceEEEec-CCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCC
Q 017317           80 EDVCVDR-NGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNG  156 (373)
Q Consensus        80 ~~ia~d~-~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~  156 (373)
                      .+|-+++ .+.|.+++++|.+..++-...........+.|+..-+|..+-.+|+++..+-|.++| ..+ ...+.++.. 
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~-   95 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDE-   95 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCC-
Confidence            4455555 678889999999988883222111111234444366776666899998877788888 555 444433322 


Q ss_pred             ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEE
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVC  235 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~  235 (373)
                          .+..|...+.-...|+.+.                 ...|-.+|+.+....   ..+..+ .-.+.+-.|+.|+|.
T Consensus        96 ----~i~ci~~~~~~~~vIsgsW-----------------D~~ik~wD~R~~~~~---~~~d~~kkVy~~~v~g~~LvVg  151 (323)
T KOG1036|consen   96 ----GIRCIEYSYEVGCVISGSW-----------------DKTIKFWDPRNKVVV---GTFDQGKKVYCMDVSGNRLVVG  151 (323)
T ss_pred             ----ceEEEEeeccCCeEEEccc-----------------CccEEEEeccccccc---cccccCceEEEEeccCCEEEEe
Confidence                2344544443344455432                 356777787642211   111222 234556667766665


Q ss_pred             eCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCC
Q 017317          236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSS  286 (373)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~  286 (373)
                      . .+..+..||+..-... ++.....+.-..+.++.-+++ .+.+++..||.
T Consensus       152 ~-~~r~v~iyDLRn~~~~-~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV  201 (323)
T KOG1036|consen  152 T-SDRKVLIYDLRNLDEP-FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV  201 (323)
T ss_pred             e-cCceEEEEEcccccch-hhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence            4 4567888887532110 000000111123445555544 35566666653

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.67  E-value=14  Score=34.38  Aligned_cols=83  Identities=13%  Similarity=0.204  Sum_probs=54.0

Q ss_pred             CceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCC----CCeEEEEEec-CCCCcceeEEecCCCCCCC-ce
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETF----KFRCLKYWLK-GESKEQTEIFVENLPGGPD-NI  269 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~g~p~-~i  269 (373)
                      -..|+.++.+++..+.+-.+.... .-+.++++++.+|+..+.    ...|++.+++ +.   ..+.+...  .... .+
T Consensus       259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~--~~~~~~~  333 (353)
T PF00930_consen  259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCE--DGDHYSA  333 (353)
T ss_dssp             SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTT--SSTTEEE
T ss_pred             CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCC--CCCceEE
Confidence            468999999988766654443333 457889999999988775    3478888766 32   22333211  1233 68


Q ss_pred             eECCCCCEEEEEecC
Q 017317          270 KLAPDGSFWIAILQL  284 (373)
Q Consensus       270 ~~d~dG~lwva~~~~  284 (373)
                      .++++|++++-+..+
T Consensus       334 ~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  334 SFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EE-TTSSEEEEEEES
T ss_pred             EECCCCCEEEEEEcC
Confidence            899999998887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.66  E-value=14  Score=34.10  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=79.4

Q ss_pred             ceEEEEeCCCCeEEE-eecCCCCcce-EEEccCCC--EEEEE-eCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC
Q 017317          198 GKLLKYDPSLNETSI-LLDSLFFANG-VALSKDED--YLVVC-ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA  272 (373)
Q Consensus       198 g~l~~~d~~~~~~~~-~~~~~~~~~g-i~~~~dg~--~l~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  272 (373)
                      +.||.||.++-+.-. +...-.+|.| .|+++...  ++-+- .+..+.|+.|+...  ........ .-.+-...++++
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~-aH~~~lAalafs  182 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTIN-AHKGPLAALAFS  182 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEE-ecCCceeEEEEC
Confidence            358888876543222 2222355665 35555443  34332 23456788888543  22221111 112334568899


Q ss_pred             CCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEE-C-CCCcEEEEEeCCCCceecceeEEEE
Q 017317          273 PDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNV-A-ANGIVIRKFEDPNGKVMSFVTSALE  350 (373)
Q Consensus       273 ~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~-~~g~~~~~~~~~~g~~~~~~~~~~~  350 (373)
                      ++|++..+....                                  |.|+++ + ++|+.+..|..  |.....+.++.+
T Consensus       183 ~~G~llATASeK----------------------------------GTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~F  226 (391)
T KOG2110|consen  183 PDGTLLATASEK----------------------------------GTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSF  226 (391)
T ss_pred             CCCCEEEEeccC----------------------------------ceEEEEEEcCCccEeeeeeC--CceeeEEEEEEE
Confidence            999887765442                                  234443 3 78888887763  444556778888


Q ss_pred             eC-CEEEEeeCCCCeEEEeeCCC
Q 017317          351 FD-DHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       351 ~~-g~L~vgs~~~~~i~~~~l~~  372 (373)
                      +. ..+...+-+...|..++|+.
T Consensus       227 s~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  227 SPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCCCCeEEEecCCCeEEEEEecc
Confidence            74 56666666788899999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.54  E-value=21  Score=36.11  Aligned_cols=66  Identities=14%  Similarity=0.054  Sum_probs=39.0

Q ss_pred             cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCC
Q 017317          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~  240 (373)
                      +-++.+.|||++....--               ..+-.||.+|.  -++..-+-+..-| -.+.+++|++ ++++.+-+.
T Consensus       511 vL~v~~Spdgk~LaVsLL---------------dnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DSk-livTgSADK  572 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLL---------------DNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADK  572 (888)
T ss_pred             EEEEEEcCCCcEEEEEec---------------cCeEEEEEecc--eeeeeeecccccceeEEeccCCcC-eEEeccCCC
Confidence            446778899987654211               12235666653  4444433333444 4688999998 888876655


Q ss_pred             eEEEE
Q 017317          241 RCLKY  245 (373)
Q Consensus       241 ~i~~~  245 (373)
                      .+..+
T Consensus       573 nVKiW  577 (888)
T KOG0306|consen  573 NVKIW  577 (888)
T ss_pred             ceEEe
Confidence            45444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=90.53  E-value=1.7  Score=39.52  Aligned_cols=90  Identities=12%  Similarity=-0.002  Sum_probs=52.3

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                      ..|-.++..+.++.....  ..-.|||-..-...+.|+.+..+.|..+++.-...-.   ..+.-..+...+.+|.+ +|
T Consensus       340 RTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd~k-rI  413 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDNK-RI  413 (499)
T ss_pred             ceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeecCc-ee
Confidence            345566666666544332  2446787766556699999999999999875432111   11111234566777643 56


Q ss_pred             EEEEecCCCchhhhcc
Q 017317          278 WIAILQLSSPGLEFVH  293 (373)
Q Consensus       278 wva~~~~~~~~~~~~~  293 (373)
                      --+...|....+++.+
T Consensus       414 VSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQA  429 (499)
T ss_pred             eeccccceEEEEeccc
Confidence            6666666555555443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=90.21  E-value=11  Score=32.29  Aligned_cols=19  Identities=11%  Similarity=0.144  Sum_probs=15.3

Q ss_pred             ccceeEEcCCCcEEEEeCC
Q 017317          161 LADDLIAATDGSIYFSVAS  179 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~  179 (373)
                      .+.++++.|.|.+|...+.
T Consensus        34 airav~fhp~g~lyavgsn   52 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGSN   52 (350)
T ss_pred             heeeEEecCCCceEEeccC
Confidence            4678899999999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=90.11  E-value=24  Score=36.09  Aligned_cols=145  Identities=15%  Similarity=0.156  Sum_probs=80.5

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEEcCC------ceEEeeeecCccccCeEECCCCc-EEEEECCCcE-EEEe-cCC-cE
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQENE-ILVCDADKGL-LKVT-EEG-VT  148 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~~~g------~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl-~~~~-~~g-~~  148 (373)
                      .+.++.+.++.. ++..+|+|..+..-|      ..+.+........ ++++..+|. ||-+.. .++ .++. .++ .+
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~-E~VLv~Wq~~T~~kq  286 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGR-EGVLVLWQLETGKKQ  286 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeeccc-ceEEEEEeecCCCcc
Confidence            456777777777 566889998886322      2233333345566 999999985 555543 344 4444 455 44


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee------------cC
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL------------DS  216 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~------------~~  216 (373)
                      .+. +..+    .+.++.+.+|+.+|.....                 ...|..+...+-......            ..
T Consensus       287 fLP-RLgs----~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~  344 (792)
T KOG1963|consen  287 FLP-RLGS----PILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRP  344 (792)
T ss_pred             ccc-ccCC----eeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccc
Confidence            442 2221    3567889999988866432                 123333322111111111            11


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ...+.+++++|--+ ..+-+...+.|..|++..
T Consensus       345 ~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  345 QSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYT  376 (792)
T ss_pred             cccceeEEEcCCCC-ceeecCCCceEEEEeccc
Confidence            23467888998444 333344556788888653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.03  E-value=26  Score=36.34  Aligned_cols=148  Identities=12%  Similarity=0.178  Sum_probs=83.3

Q ss_pred             cceEEEecCCCEE--EEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEEEEECCC-cEEEEe-cCC--cEEE
Q 017317           79 PEDVCVDRNGVLY--TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEILVCDADK-GLLKVT-EEG--VTVL  150 (373)
Q Consensus        79 P~~ia~d~~G~l~--v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~-gl~~~~-~~g--~~~l  150 (373)
                      .-++++.|. +-|  ++-.+|.|..+| .=|. ...|.+..|..- |++|++++-|||..... .|-.++ ++.  .-.+
T Consensus        12 vKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   12 VKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             ccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            445667663 334  455788888887 3222 333444445556 99999999999974433 233333 322  1111


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg  229 (373)
                      ..     ...++..+.|.+. .=|+-..+                ..-.|..++-.+.+..-++++. .....-.|.|..
T Consensus        90 ~G-----HlDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   90 LG-----HLDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE  147 (1202)
T ss_pred             cc-----ccceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence            11     1234555566544 23443222                1234444454444444444442 233456688877


Q ss_pred             CEEEEEeCCCCeEEEEEecCCC
Q 017317          230 DYLVVCETFKFRCLKYWLKGES  251 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~  251 (373)
                      + ++|+.+.+..|.++|+.|-+
T Consensus       148 D-lIVSaSLDQTVRVWDisGLR  168 (1202)
T KOG0292|consen  148 D-LIVSASLDQTVRVWDISGLR  168 (1202)
T ss_pred             c-eEEEecccceEEEEeecchh
Confidence            7 89998889999999988653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.02  E-value=3.8  Score=37.57  Aligned_cols=143  Identities=15%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEec--CC-cEEEeeccCC
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTE--EG-VTVLASHVNG  156 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~--~g-~~~l~~~~~~  156 (373)
                      .+|.++....+++|+ +..|-++..+|.........+... ||.-...+.+++.-. .-+-.+|.  +- ++.+.-..  
T Consensus       113 ~Gi~v~~~~~~tvgd-DKtvK~wk~~~~p~~tilg~s~~~-gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~--  187 (433)
T KOG0268|consen  113 RGICVTQTSFFTVGD-DKTVKQWKIDGPPLHTILGKSVYL-GIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWGA--  187 (433)
T ss_pred             eeEEecccceEEecC-CcceeeeeccCCcceeeecccccc-ccccccccccccccC-ceeeecccccCCccceeecCC--
Confidence            456776533333444 344544444443221112122334 555555556665432 23555552  22 33322111  


Q ss_pred             ccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEE
Q 017317          157 SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~  235 (373)
                         ..+..+.+.|-- .|..+..                 ..+.|+.||..+++...-..---.+|+|+|.| ..+.+++
T Consensus       188 ---Dti~svkfNpvETsILas~~-----------------sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~  246 (433)
T KOG0268|consen  188 ---DSISSVKFNPVETSILASCA-----------------SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVA  246 (433)
T ss_pred             ---CceeEEecCCCcchheeeec-----------------cCCceEEEecccCCccceeeeeccccceecCc-cccceee
Confidence               123345555544 3444332                 24678899977655322111123589999999 5578888


Q ss_pred             eCCCCeEEEEEec
Q 017317          236 ETFKFRCLKYWLK  248 (373)
Q Consensus       236 ~~~~~~i~~~~~~  248 (373)
                      ...++.+|-||+.
T Consensus       247 a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  247 ANEDHNLYTYDMR  259 (433)
T ss_pred             ccccccceehhhh
Confidence            8888999999864

>PHA03098 kelch-like protein; Provisional

Probab=90.01  E-value=21  Score=35.33  Aligned_cols=145  Identities=15%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             CCCEEE-EecC------CeEEEEE-cCCceEEeeeec-CccccCeEECCCCcEEEEECC------CcEEEEe-cCC-cEE
Q 017317           87 NGVLYT-ATRD------GWIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDAD------KGLLKVT-EEG-VTV  149 (373)
Q Consensus        87 ~G~l~v-~~~~------g~I~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~------~gl~~~~-~~g-~~~  149 (373)
                      ++.||+ |..+      ..+++++ .++++....... .+...+++. -+|+||+....      ..+.+++ .++ .+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            678884 4321      2567787 344555443221 111113333 36789986432      1255666 444 443


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ce-EEEcc
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NG-VALSK  227 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~g-i~~~~  227 (373)
                      .... +. +  .-..-+..-+|.||+..+....           ......+++||+.+++++.+.. ...+ .+ -+..-
T Consensus       373 ~~~l-p~-~--r~~~~~~~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~  436 (534)
T PHA03098        373 EPPL-IF-P--RYNPCVVNVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYH  436 (534)
T ss_pred             CCCc-Cc-C--CccceEEEECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCC-CCccccCceEEEE
Confidence            3221 11 1  1111122347899997542100           0113568999999888776532 1111 11 12222


Q ss_pred             CCCEEEEEeCCC--------CeEEEEEecC
Q 017317          228 DEDYLVVCETFK--------FRCLKYWLKG  249 (373)
Q Consensus       228 dg~~l~v~~~~~--------~~i~~~~~~~  249 (373)
                      ++ .+|+.....        ..+++||...
T Consensus       437 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        437 DG-KIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CC-EEEEECCccCCCCCcccceEEEecCCC
Confidence            33 588875321        2377887543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=89.94  E-value=16  Score=33.70  Aligned_cols=86  Identities=15%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             CCceEEEEeCCCCeEEEeecCCCC-cceEEEccCCCEEEEEeCCCCeEEEE-Eec-CCCCcceeEEecCCCCCCCceeEC
Q 017317          196 PHGKLLKYDPSLNETSILLDSLFF-ANGVALSKDEDYLVVCETFKFRCLKY-WLK-GESKEQTEIFVENLPGGPDNIKLA  272 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~-~~~-~~~~~~~~~~~~~~~g~p~~i~~d  272 (373)
                      ..|.|+.||..+-+.......... -..++|+++|. ++.+-+..+.|.|. .+. |++..+++.  ...+.....++++
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs  227 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFS  227 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEEEEEEC
Confidence            368899999876554443332222 35699999998 66666677777664 443 333222221  1112234447889


Q ss_pred             CCCCEEEEEecC
Q 017317          273 PDGSFWIAILQL  284 (373)
Q Consensus       273 ~dG~lwva~~~~  284 (373)
                      +|+.+..++...
T Consensus       228 ~ds~~L~~sS~T  239 (391)
T KOG2110|consen  228 PDSQFLAASSNT  239 (391)
T ss_pred             CCCCeEEEecCC
Confidence            999887776554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.61  E-value=23  Score=35.17  Aligned_cols=165  Identities=15%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             CCC-EEEEecCCeEEEEEcCC---ceE-Ee----eeecCccccCeEECCCC-cEEEEECCCcEEEEe-c-CC---cEEEe
Q 017317           87 NGV-LYTATRDGWIKRLHKNG---TWE-NW----KLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E-EG---VTVLA  151 (373)
Q Consensus        87 ~G~-l~v~~~~g~I~~~~~~g---~~~-~~----~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~-~g---~~~l~  151 (373)
                      +++ ||.|..+|.|..++-+.   .+. .+    .......+ .|+.-.+| .|.-|.....+-.++ . ++   ...+.
T Consensus        36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-hHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            666 88899999888887221   111 10    01112234 45554556 455455555565565 2 21   22222


Q ss_pred             eccCCccccccceeEE-cCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-------CCC-C---
Q 017317          152 SHVNGSRINLADDLIA-ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-------SLF-F---  219 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~-~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-------~~~-~---  219 (373)
                      +     ...++..|+. .++..+.++.+                 -.+.|+.+|-.++.-+.+..       .+. .   
T Consensus       115 ~-----H~DYVkcla~~ak~~~lvaSgG-----------------LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen  115 T-----HKDYVKCLAYIAKNNELVASGG-----------------LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             c-----ccchheeeeecccCceeEEecC-----------------CCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            2     1235667777 55555655532                 23567777766552211111       011 1   


Q ss_pred             -cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc---eeECCCCCEEEEE
Q 017317          220 -ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN---IKLAPDGSFWIAI  281 (373)
Q Consensus       220 -~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~dG~lwva~  281 (373)
                       ...++..+.| +++|+...+.-|..|+...   ...  .. .+.|+-+|   +.++.||+-.+++
T Consensus       173 siYSLA~N~t~-t~ivsGgtek~lr~wDprt---~~k--im-kLrGHTdNVr~ll~~dDGt~~ls~  231 (735)
T KOG0308|consen  173 SIYSLAMNQTG-TIIVSGGTEKDLRLWDPRT---CKK--IM-KLRGHTDNVRVLLVNDDGTRLLSA  231 (735)
T ss_pred             ceeeeecCCcc-eEEEecCcccceEEecccc---ccc--ee-eeeccccceEEEEEcCCCCeEeec
Confidence             1235555555 4777765555555555322   111  11 22345555   4578899644443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=89.43  E-value=27  Score=35.72  Aligned_cols=144  Identities=16%  Similarity=0.100  Sum_probs=78.8

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeee-----cCccccCeEECCCCcEEEE-ECCCcEEEEe--c-CC--
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI-----GGDTLLGITTTQENEILVC-DADKGLLKVT--E-EG--  146 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va-~~~~gl~~~~--~-~g--  146 (373)
                      |..|+....|....-..+-.++.+. +.+........     .-... ..++.+.++..++ +..+.|+.+.  . ++  
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t-~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT-CVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce-eEEeccccceEEEeccCCcEEEEecccccccc
Confidence            7777777777766444444565555 32221110000     00012 4566677765544 3334454443  2 12  


Q ss_pred             --cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-ceE
Q 017317          147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-NGV  223 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi  223 (373)
                        .+.+.-+     ...++++++..||....+.+.                 .+-+.++..++++ +.++..+..| .++
T Consensus       242 ~t~t~lHWH-----~~~V~~L~fS~~G~~LlSGG~-----------------E~VLv~Wq~~T~~-kqfLPRLgs~I~~i  298 (792)
T KOG1963|consen  242 ETCTLLHWH-----HDEVNSLSFSSDGAYLLSGGR-----------------EGVLVLWQLETGK-KQFLPRLGSPILHI  298 (792)
T ss_pred             ccceEEEec-----ccccceeEEecCCceEeeccc-----------------ceEEEEEeecCCC-cccccccCCeeEEE
Confidence              1222111     125788999999954444322                 2455555555666 4556666555 689


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEe
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~  247 (373)
                      .+++|++ +|-.-..++.|..+..
T Consensus       299 ~vS~ds~-~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  299 VVSPDSD-LYSLVLEDNQIHLIKA  321 (792)
T ss_pred             EEcCCCC-eEEEEecCceEEEEec
Confidence            9999998 6666667888888765

>PHA02790 Kelch-like protein; Provisional

Probab=89.37  E-value=23  Score=34.72  Aligned_cols=166  Identities=9%  Similarity=0.049  Sum_probs=79.4

Q ss_pred             CCCEEE-EecC-----CeEEEEEc-CCceEEeeeec-CccccCeEECCCCcEEEEECC---CcEEEEe-cCC-cEEEeec
Q 017317           87 NGVLYT-ATRD-----GWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD---KGLLKVT-EEG-VTVLASH  153 (373)
Q Consensus        87 ~G~l~v-~~~~-----g~I~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~---~gl~~~~-~~g-~~~l~~~  153 (373)
                      ++.||+ |..+     ..+.++++ .+++....... .+...+.+. -+|.||+....   ..+.+++ .++ .+.+.. 
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence            578884 4322     24677874 44454443221 111113333 46899986432   2366677 344 443322 


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc--ceEEEccCCCE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA--NGVALSKDEDY  231 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~--~gi~~~~dg~~  231 (373)
                         .+......-+..-+|.||+..+..              .....+.+|||.+++++.... ...|  ..-+..-++ .
T Consensus       349 ---l~~~r~~~~~~~~~g~IYviGG~~--------------~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~-~  409 (480)
T PHA02790        349 ---LLKPRCNPAVASINNVIYVIGGHS--------------ETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGR-R  409 (480)
T ss_pred             ---CCCCCcccEEEEECCEEEEecCcC--------------CCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECC-E
Confidence               111111122333479999975421              011357789999888776432 2222  111222344 4


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCC--CCCceeECCCCCEEEEE
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPG--GPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~dG~lwva~  281 (373)
                      +|+...   ...+|+...   .+..... ..+.  .-.+++. -+|.||+..
T Consensus       410 IYv~GG---~~e~ydp~~---~~W~~~~-~m~~~r~~~~~~v-~~~~IYviG  453 (480)
T PHA02790        410 LFLVGR---NAEFYCESS---NTWTLID-DPIYPRDNPELII-VDNKLLLIG  453 (480)
T ss_pred             EEEECC---ceEEecCCC---CcEeEcC-CCCCCccccEEEE-ECCEEEEEC
Confidence            998852   366777432   2222222 2221  1112332 467888874

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.31  E-value=23  Score=34.68  Aligned_cols=147  Identities=13%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             CCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEE
Q 017317           96 DGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIY  174 (373)
Q Consensus        96 ~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~  174 (373)
                      ....+.+|.+|.++.+..........+...++|.|++... ..+..+|-.| ...... .++.....=.++...++|++.
T Consensus       127 ~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~-l~~~~~~~HHD~~~l~nGn~L  204 (477)
T PF05935_consen  127 SSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYD-LPGGYYDFHHDIDELPNGNLL  204 (477)
T ss_dssp             EEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE---TTEE-B-S-EEE-TTS-EE
T ss_pred             CceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeee-cCCcccccccccEECCCCCEE
Confidence            4667888888887654332222220256678999998875 6788888666 322222 222111123578899999876


Q ss_pred             EEeCCccccccccccccccccCCceEEEEeCCCCeEEEee---cCC-------------------------CCcceEEEc
Q 017317          175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL---DSL-------------------------FFANGVALS  226 (373)
Q Consensus       175 v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~---~~~-------------------------~~~~gi~~~  226 (373)
                      +...........    .....-.-.|+.+| .+|++....   +-+                         .+.|++.++
T Consensus       205 ~l~~~~~~~~~~----~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  205 ILASETKYVDED----KDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             EEEEETTEE-TS-----EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             EEEeecccccCC----CCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            654311110000    00011123577777 445543321   000                         124678888


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecC
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +..+.++++.+..+.|++++...
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TT
T ss_pred             CCCCeEEEEcCcceEEEEEECCC
Confidence            86667999998888999998443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=89.15  E-value=15  Score=32.45  Aligned_cols=152  Identities=16%  Similarity=0.110  Sum_probs=78.4

Q ss_pred             CcceEEEecCCCEEEE-e---cCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe---cCC-cEE
Q 017317           78 GPEDVCVDRNGVLYTA-T---RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT---EEG-VTV  149 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~-~---~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~---~~g-~~~  149 (373)
                      .+.+.++.++|..+.. .   ....++....++...... ...... ...++++|.+|+++......++.   .++ ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            5677788888876532 2   234455555555444432 223444 67789999999986654433322   344 322


Q ss_pred             EeeccCCccccccceeEEcCCC-cE-EEEeCCccccccccccccccccCCceEEEE----eCCCCeEEE------ee-cC
Q 017317          150 LASHVNGSRINLADDLIAATDG-SI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKY----DPSLNETSI------LL-DS  216 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG-~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~----d~~~~~~~~------~~-~~  216 (373)
                      ..-....... .+..|.+++|| ++ ++....                ..++|+.-    +.+ +....      +. ..
T Consensus       103 ~~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~~----------------~~~~v~va~V~r~~~-g~~~~l~~~~~~~~~~  164 (253)
T PF10647_consen  103 VEVDWPGLRG-RITALRVSPDGTRVAVVVEDG----------------GGGRVYVAGVVRDGD-GVPRRLTGPRRVAPPL  164 (253)
T ss_pred             EEecccccCC-ceEEEEECCCCcEEEEEEecC----------------CCCeEEEEEEEeCCC-CCcceeccceEecccc
Confidence            2111111111 57789999999 44 333211                12444432    222 21111      11 22


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEE-EEecC
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLK-YWLKG  249 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~-~~~~~  249 (373)
                      ......++|..++..++++......+.. +..+|
T Consensus       165 ~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             cCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence            3445689999998844445444444555 44444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.02  E-value=27  Score=35.02  Aligned_cols=140  Identities=19%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             eEEEecCCCEEEEecCCeEEEEEcCCceE-EeeeecCccccCeEECCCCcEEEE-ECCCcEEEEecCC--cEEEeeccCC
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLHKNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVTEEG--VTVLASHVNG  156 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~~~g--~~~l~~~~~~  156 (373)
                      ++..+.++.+..|+++-.+.++. .|+.. .......... .++.-+++ .|+. .+++ .+++-..|  .+.+..+   
T Consensus       106 ~ls~~~~~~~iSgSWD~TakvW~-~~~l~~~l~gH~asVW-Av~~l~e~-~~vTgsaDK-tIklWk~~~~l~tf~gH---  178 (745)
T KOG0301|consen  106 SLSIGEDGTLISGSWDSTAKVWR-IGELVYSLQGHTASVW-AVASLPEN-TYVTGSADK-TIKLWKGGTLLKTFSGH---  178 (745)
T ss_pred             eeecCCcCceEecccccceEEec-chhhhcccCCcchhee-eeeecCCC-cEEeccCcc-eeeeccCCchhhhhccc---
Confidence            34445566666666655544443 12111 1111112233 44555666 4554 4444 44443223  3433221   


Q ss_pred             ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  236 (373)
                        ...+.++++-+++.+. +.+.                 .|.|.+++.++.........-.+-..+....+++ ++++.
T Consensus       179 --tD~VRgL~vl~~~~fl-ScsN-----------------Dg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~  237 (745)
T KOG0301|consen  179 --TDCVRGLAVLDDSHFL-SCSN-----------------DGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVST  237 (745)
T ss_pred             --hhheeeeEEecCCCeE-eecC-----------------CceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEe
Confidence              1246677877665543 2221                 3566666664433333333223334455444444 66665


Q ss_pred             CCCCeEEEEEecC
Q 017317          237 TFKFRCLKYWLKG  249 (373)
Q Consensus       237 ~~~~~i~~~~~~~  249 (373)
                       +.+|-.|+|-.+
T Consensus       238 -gEDrtlriW~~~  249 (745)
T KOG0301|consen  238 -GEDRTLRIWKKD  249 (745)
T ss_pred             -cCCceEEEeecC
Confidence             445666666433

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.57  E-value=37  Score=36.08  Aligned_cols=228  Identities=14%  Similarity=0.072  Sum_probs=111.7

Q ss_pred             EEEEecCCeEEEEE--cC--CceEEeee--------ecCccccCeEEC---CCCcEEEEECCCcEEE-EecCCcEEEeec
Q 017317           90 LYTATRDGWIKRLH--KN--GTWENWKL--------IGGDTLLGITTT---QENEILVCDADKGLLK-VTEEGVTVLASH  153 (373)
Q Consensus        90 l~v~~~~g~I~~~~--~~--g~~~~~~~--------~~~~p~~gl~~d---~~g~L~va~~~~gl~~-~~~~g~~~l~~~  153 (373)
                      +.+++.+|-|..+.  .+  ++.+.+..        ...+-. |+.+|   ..|.|+++.. -.+++ +|......+.+ 
T Consensus      1126 lLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~d- 1202 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVAD- 1202 (1387)
T ss_pred             eeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC-CeeeehhhhCCeEEecCC-eeEEEEEecccceeEee-
Confidence            44677777665555  33  33332211        112334 66665   5677877642 33444 44222222222 


Q ss_pred             cCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE----EEeecCCCC--cceEEEc
Q 017317          154 VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET----SILLDSLFF--ANGVALS  226 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~----~~~~~~~~~--~~gi~~~  226 (373)
                      .+-.....+..+.-+. .|++.++.-                 ..|.|-.||......    .........  ..++.+-
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGf-----------------aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGF-----------------ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEee-----------------cCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence            2222223455665553 368777643                 246777777432211    111111111  3456666


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCC-CCcceeEEecCCCCC-CCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHh
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGG-PDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA  304 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~-p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~  304 (373)
                      +.|-.-+|+.+.++.|..+|+... +............|. -..+.+-++-.+..+...                     
T Consensus      1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--------------------- 1324 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--------------------- 1324 (1387)
T ss_pred             cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc---------------------
Confidence            666555777777888999998763 211111111111121 223344333334433222                     


Q ss_pred             cchhhhhccCCCccEEEEEECCCCcEEEEEeC---CCCceecceeEEEEeCCE-EEEeeCCCCeEEEeeCCC
Q 017317          305 FPKLIKLVAPLHKKAAVVNVAANGIVIRKFED---PNGKVMSFVTSALEFDDH-LYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       305 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~---~~g~~~~~~~~~~~~~g~-L~vgs~~~~~i~~~~l~~  372 (373)
                                    ..+-.|+.+|+.+..+.-   .-|.....++.+.++.-+ +...+...++|..|.-++
T Consensus      1325 --------------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 --------------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             --------------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence                          235667777877655432   223334556788887643 344447788888887553

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.55  E-value=22  Score=33.50  Aligned_cols=39  Identities=28%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             ceEEEEeCCCCeEEEeecCCC-CcceEEEccCCCEEEEEe
Q 017317          198 GKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCE  236 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~-~~~gi~~~~dg~~l~v~~  236 (373)
                      ..+++||+.+++...+..... .-.+.++..-++.||+..
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G  228 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN  228 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence            579999999888876542211 112333333234588765

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=88.34  E-value=27  Score=34.22  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             EEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCc----cccCeEECCCCcEEEEEC--------------CCcEEEEe
Q 017317           82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGD----TLLGITTTQENEILVCDA--------------DKGLLKVT  143 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~----p~~gl~~d~~g~L~va~~--------------~~gl~~~~  143 (373)
                      +...++|.++++.. ..+..+|..|+........+.    -+ .+...++|++++...              ...|+.++
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            44455777776555 677888877775433332332    35 888889998665322              23577787


Q ss_pred             cCC-c-EEEe--eccC--------------------CccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCc
Q 017317          144 EEG-V-TVLA--SHVN--------------------GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (373)
Q Consensus       144 ~~g-~-~~l~--~~~~--------------------~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g  198 (373)
                      ++| + ..+.  ...+                    +......|++..++ ++.|.++.-                 ...
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR-----------------~~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR-----------------HQS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET-----------------TT-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC-----------------cce
Confidence            667 3 2221  1110                    01112567888887 678888742                 345


Q ss_pred             eEEEEeCCCCeEEEee
Q 017317          199 KLLKYDPSLNETSILL  214 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~  214 (373)
                      .|+++|..++++..++
T Consensus       294 ~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  294 AVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             EEEEEE-TTS-EEEEE
T ss_pred             EEEEEECCCCcEEEEe
Confidence            7888887777776543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.88  E-value=21  Score=36.16  Aligned_cols=146  Identities=15%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC--cEEEee
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g--~~~l~~  152 (373)
                      --++.+.|||.+. ++--++.+..+-.|. ++..-.-...-|+..|-+.+|.++.|... .+.+-.+- .=|  .+-+..
T Consensus       511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence            3456778888888 555677766555332 22211111223443677778898887633 33333332 223  222221


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCE
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TSILLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~~~~~~~~~~~gi~~~~dg~~  231 (373)
                      +.     ..+..+.+-|+-.++|+.+.                 .+.+-++|.+.-+ ++.+.......-.++.+|+|+ 
T Consensus       591 Hd-----DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-  647 (888)
T KOG0306|consen  591 HD-----DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-  647 (888)
T ss_pred             cc-----CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcCCCC-
Confidence            11     23567788888888888764                 4677788764221 222222233445688899998 


Q ss_pred             EEEEeCCCCeEEEEEe
Q 017317          232 LVVCETFKFRCLKYWL  247 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~  247 (373)
                      ..|+.+-+..|..|..
T Consensus       648 ~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  648 FVVSSSHDKSIRLWER  663 (888)
T ss_pred             eEEeccCCceeEeeec
Confidence            5556555566666653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=87.72  E-value=5.2  Score=38.95  Aligned_cols=146  Identities=11%  Similarity=0.112  Sum_probs=75.3

Q ss_pred             EEEec-CCCEEEEecCCeEEEEEc-CCc-eEEe---ee---ecC-----ccccCeEECCCC-cEEEEECCCcEEEEe-cC
Q 017317           82 VCVDR-NGVLYTATRDGWIKRLHK-NGT-WENW---KL---IGG-----DTLLGITTTQEN-EILVCDADKGLLKVT-EE  145 (373)
Q Consensus        82 ia~d~-~G~l~v~~~~g~I~~~~~-~g~-~~~~---~~---~~~-----~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~  145 (373)
                      +-+.+ .|.|-+|+.+|.|-.||+ +.. ...+   ..   .++     .+. ++.|+.+| .+=|++..+.++.+| ..
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEccc
Confidence            34444 455557778888887873 211 1111   11   111     245 78887666 455667666688888 54


Q ss_pred             C-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       146 g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                      . ...+.++....+......+..+.+..++-.|..                   .+-.+|..+|+.-........-|-++
T Consensus       260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~-------------------~~kiWd~~~Gk~~asiEpt~~lND~C  320 (703)
T KOG2321|consen  260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR-------------------ILKIWDECTGKPMASIEPTSDLNDFC  320 (703)
T ss_pred             CCceeecccCCccceeeecccccCCCceEEecchH-------------------HhhhcccccCCceeeccccCCcCcee
Confidence            4 333333322222221111111212234433321                   23335666676655555556678899


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEec
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      +-|++..++++. ....+..|.+.
T Consensus       321 ~~p~sGm~f~An-e~~~m~~yyiP  343 (703)
T KOG2321|consen  321 FVPGSGMFFTAN-ESSKMHTYYIP  343 (703)
T ss_pred             eecCCceEEEec-CCCcceeEEcc
Confidence            999987555554 45566666653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.50  E-value=27  Score=33.27  Aligned_cols=85  Identities=15%  Similarity=0.052  Sum_probs=45.7

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCc--ceEEEccCCCEEEEEeCCC----------CeEEEEEecCCCCcceeEEecCCCCC
Q 017317          198 GKLLKYDPSLNETSILLDSLFFA--NGVALSKDEDYLVVCETFK----------FRCLKYWLKGESKEQTEIFVENLPGG  265 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~g~  265 (373)
                      -.|+.+|.++++...  +.+..+  .+++|.+|++.+|.+....          ..|+++.+..+......+|......+
T Consensus       150 ~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~  227 (414)
T PF02897_consen  150 YTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF  227 (414)
T ss_dssp             EEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred             EEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence            458889998885432  222222  2399999999888876433          34666665443222233443222222


Q ss_pred             -CCceeECCCCCE-EEEEecC
Q 017317          266 -PDNIKLAPDGSF-WIAILQL  284 (373)
Q Consensus       266 -p~~i~~d~dG~l-wva~~~~  284 (373)
                       --++..+.||++ .+....+
T Consensus       228 ~~~~~~~s~d~~~l~i~~~~~  248 (414)
T PF02897_consen  228 WFVSVSRSKDGRYLFISSSSG  248 (414)
T ss_dssp             SEEEEEE-TTSSEEEEEEESS
T ss_pred             EEEEEEecCcccEEEEEEEcc
Confidence             235667888875 4444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=86.61  E-value=21  Score=33.67  Aligned_cols=141  Identities=9%  Similarity=-0.015  Sum_probs=79.3

Q ss_pred             CCCEEEEecCCeEEEEEcCC--c------eEE-eeeecCccccCeEECC-CCcEEEEECC-CcEEEEe-cCC---cEEEe
Q 017317           87 NGVLYTATRDGWIKRLHKNG--T------WEN-WKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-EEG---VTVLA  151 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~~~g--~------~~~-~~~~~~~p~~gl~~d~-~g~L~va~~~-~gl~~~~-~~g---~~~l~  151 (373)
                      .|.|..+..++.|..++.+.  .      .+. +........ ..++.+ +..||.+... ..+..+| +++   .+...
T Consensus       190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~  268 (422)
T KOG0264|consen  190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV  268 (422)
T ss_pred             ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence            57777778888898888322  1      111 111112223 444443 2346644332 3455566 432   11111


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--EEeecCCCCcceEEEccCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--SILLDSLFFANGVALSKDE  229 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~~~~~~~~~~~gi~~~~dg  229 (373)
                      .    ..-..++.+++.|-+...+++.+                ..++|..+|..+-..  ..+...-..-..+.|+|..
T Consensus       269 ~----ah~~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  269 K----AHSAEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             c----ccCCceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            1    11134678899987655555443                357888888763221  1111112233568999999


Q ss_pred             CEEEEEeCCCCeEEEEEec
Q 017317          230 DYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~  248 (373)
                      +.++.+....+++..+|+.
T Consensus       329 etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  329 ETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             CceeEecccCCcEEEEecc
Confidence            9899998888999999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=86.60  E-value=22  Score=31.43  Aligned_cols=179  Identities=11%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             EEEecCCCEEEEe-cCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCC--cEEEeecc
Q 017317           82 VCVDRNGVLYTAT-RDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG--VTVLASHV  154 (373)
Q Consensus        82 ia~d~~G~l~v~~-~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g--~~~l~~~~  154 (373)
                      |-+..+|.|.+.. .+....++- .+|+ .-++....+... .+.+|.+-+.. -+.+.+.+..+| ++|  +..+..  
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~--   92 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT--   92 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeec--
Confidence            4555678877655 333333332 3554 233333344455 55666544433 344445566777 777  222211  


Q ss_pred             CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC-------CCe-EEEeecCCCCcceEEEc
Q 017317          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNE-TSILLDSLFFANGVALS  226 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-------~~~-~~~~~~~~~~~~gi~~~  226 (373)
                       +   ..+..+.++.+|++.+.......|.            .+.|..+|..       ..+ +..+...-..++...|+
T Consensus        93 -~---~~Vk~~~F~~~gn~~l~~tD~~mg~------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   93 -N---SPVKRVDFSFGGNLILASTDKQMGY------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             -C---CeeEEEeeccCCcEEEEEehhhcCc------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence             1   1345678888897655443321221            2334444432       112 22333333556778899


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCC-CCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      +-+++++.. -.++.|.+|++... ..-+...   .-..-.+++.+.+|..++++...
T Consensus       157 ~l~~~ii~G-he~G~is~~da~~g~~~v~s~~---~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  157 PLGETIIAG-HEDGSISIYDARTGKELVDSDE---EHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             ccCCEEEEe-cCCCcEEEEEcccCceeeechh---hhccccccccccCCcceEEeccc
Confidence            999855544 45678999997542 1111100   11124678999999999988653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=85.98  E-value=40  Score=33.83  Aligned_cols=134  Identities=14%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             eEEEEE-cCCceEEeeeec-CccccCeEECCCCcEEEEECCC-------cEEEEe-cCC-cEEEeeccCCccccccceeE
Q 017317           98 WIKRLH-KNGTWENWKLIG-GDTLLGITTTQENEILVCDADK-------GLLKVT-EEG-VTVLASHVNGSRINLADDLI  166 (373)
Q Consensus        98 ~I~~~~-~~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~~-------gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~  166 (373)
                      .+-.+| ..+++...+..+ .+...++++- +|.|||+....       .+.+|| ... ...++.-..   .+.-.+++
T Consensus       302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~  377 (571)
T KOG4441|consen  302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVA  377 (571)
T ss_pred             eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeE
Confidence            445566 334454443322 2222266664 57899874333       255666 333 333322110   01111222


Q ss_pred             EcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC------C
Q 017317          167 AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK------F  240 (373)
Q Consensus       167 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~------~  240 (373)
                      . -+|.||+..+..  |          ...-..+-+|||.+.+++.+..-...-.+.+...-+..+|++....      .
T Consensus       378 ~-l~g~iYavGG~d--g----------~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~  444 (571)
T KOG4441|consen  378 V-LDGKLYAVGGFD--G----------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN  444 (571)
T ss_pred             E-ECCEEEEEeccc--c----------ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence            2 378999876541  1          1122468999999988887653322222333333334588876522      4


Q ss_pred             eEEEEEec
Q 017317          241 RCLKYWLK  248 (373)
Q Consensus       241 ~i~~~~~~  248 (373)
                      .+.+||..
T Consensus       445 sve~YDP~  452 (571)
T KOG4441|consen  445 SVECYDPE  452 (571)
T ss_pred             eEEEEcCC
Confidence            56778744

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=85.90  E-value=6.8  Score=35.78  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=84.8

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEcCCce--EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEEE
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTW--ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~--~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~l  150 (373)
                      .+-.++.+| |+.+..|..++.|..+|.+...  .......|... .+-+  +.++.|. .....+..+| ++|  +..+
T Consensus       198 kgVYClQYD-D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CLqy--d~rviisGSSDsTvrvWDv~tge~l~tl  273 (499)
T KOG0281|consen  198 KGVYCLQYD-DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTL  273 (499)
T ss_pred             CceEEEEec-chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-eeec--cceEEEecCCCceEEEEeccCCchhhHH
Confidence            344556666 6677777788888888754321  11112223333 3444  4567765 3345677777 677  4443


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EE-EeecCCCCcceEEEccC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TS-ILLDSLFFANGVALSKD  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~-~~~~~~~~~~gi~~~~d  228 (373)
                      ...-+     .+-.+.+. +| +.|+.+.               ..+.+||..+..+.. .. ++.......|.+.|+. 
T Consensus       274 ihHce-----aVLhlrf~-ng-~mvtcSk---------------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~-  330 (499)
T KOG0281|consen  274 IHHCE-----AVLHLRFS-NG-YMVTCSK---------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-  330 (499)
T ss_pred             hhhcc-----eeEEEEEe-CC-EEEEecC---------------CceeEEEeccCchHHHHHHHHhhhhhheeeecccc-
Confidence            32211     12234443 23 4445443               123456666533211 00 1122233446666653 


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CCCCEEEEEe
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDGSFWIAIL  282 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~dG~lwva~~  282 (373)
                       + ++|+.++...|..++.+..      .+...+.|.-.||+-- -.|++-|+..
T Consensus       331 -k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGS  377 (499)
T KOG0281|consen  331 -K-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGS  377 (499)
T ss_pred             -c-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecC
Confidence             3 6677666666666664322      2333455667777643 3556666543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=85.15  E-value=3.1  Score=30.04  Aligned_cols=48  Identities=8%  Similarity=-0.108  Sum_probs=31.9

Q ss_pred             EecCCeEEEEEcCCceEEeeeecCccccCeEECCCC-cEEEEECCC-cEEEE
Q 017317           93 ATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-EILVCDADK-GLLKV  142 (373)
Q Consensus        93 ~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~-gl~~~  142 (373)
                      +..-+.|+.+++ ++.+..+.....|+ ||.+++++ .|||++... .|..+
T Consensus        32 ~~~~~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy   81 (86)
T PF01731_consen   32 GLPWGNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVY   81 (86)
T ss_pred             cCCCceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEE
Confidence            334567777764 34555555567889 99999877 589997653 34444

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=85.12  E-value=32  Score=34.84  Aligned_cols=102  Identities=10%  Similarity=0.000  Sum_probs=55.5

Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc----ceEEEccCCCEEEE
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA----NGVALSKDEDYLVV  234 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~----~gi~~~~dg~~l~v  234 (373)
                      .....+|++||.-.+.++...                 ...|-.||.+.++......+-..-    --+.++|.|.  |+
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi--Y~  656 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI--YL  656 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCcc--EE
Confidence            345789999998655554322                 134666777766655555443333    3366788874  54


Q ss_pred             Ee-CCCCeEEEEEecCC-----CCcceeEEecCCCCCCCc---eeECCCCCEEEE
Q 017317          235 CE-TFKFRCLKYWLKGE-----SKEQTEIFVENLPGGPDN---IKLAPDGSFWIA  280 (373)
Q Consensus       235 ~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~~~g~p~~---i~~d~dG~lwva  280 (373)
                      +. ..+..+..||....     ..+..+.+. ..--.+|.   |.+..||.|+|=
T Consensus       657 atScsdktl~~~Df~sgEcvA~m~GHsE~VT-G~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  657 ATSCSDKTLCFVDFVSGECVAQMTGHSEAVT-GVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             EEeecCCceEEEEeccchhhhhhcCcchhee-eeeecccchhheeecCCceEEEE
Confidence            43 34556888886432     122222222 11112333   556778877663

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=84.89  E-value=2.9  Score=24.96  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=24.1

Q ss_pred             CcCCcceEEEec-CCCEEE-EecCCeEEEEEcCC
Q 017317           75 ILNGPEDVCVDR-NGVLYT-ATRDGWIKRLHKNG  106 (373)
Q Consensus        75 ~~~~P~~ia~d~-~G~l~v-~~~~g~I~~~~~~g  106 (373)
                      .+..|.++++|+ +++||. ....+.|.+.+-+|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            478899999998 667884 44667788777555

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=84.70  E-value=11  Score=34.89  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             CeEECCCCcE-EEEECCCcE--EEEec-C-CcEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccc
Q 017317          121 GITTTQENEI-LVCDADKGL--LKVTE-E-GVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEA  194 (373)
Q Consensus       121 gl~~d~~g~L-~va~~~~gl--~~~~~-~-g~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~  194 (373)
                      .....++++| ++++..+..  +.++. . +.+.+.....   -..++++.+..+. .+-+++..               
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dka---------------  128 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKA---------------  128 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeec---------------
Confidence            4445566664 456665654  33432 2 2222211110   1245566665544 56666643               


Q ss_pred             cCCceEEEEeCCC---CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317          195 KPHGKLLKYDPSL---NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       195 ~~~g~l~~~d~~~---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  246 (373)
                         |.++.+|.-.   +..+.....+..-..+++++|+++++.++... .|..-+
T Consensus       129 ---gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~  179 (390)
T KOG3914|consen  129 ---GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSR  179 (390)
T ss_pred             ---CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEe
Confidence               5566665322   44444455556667899999999888888644 444433

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.62  E-value=33  Score=31.66  Aligned_cols=54  Identities=20%  Similarity=0.215  Sum_probs=36.1

Q ss_pred             CCceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          196 PHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      ..+.|-.+|..++..-. +........+++|+|.|++|+-+ ..+..+..|+++..
T Consensus       312 rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~~  366 (406)
T KOG0295|consen  312 RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKNL  366 (406)
T ss_pred             ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEeccc
Confidence            34556666777776543 33445667899999999955543 45667888887653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=84.28  E-value=33  Score=31.29  Aligned_cols=133  Identities=12%  Similarity=0.065  Sum_probs=75.7

Q ss_pred             eEEEEeCCCCeEEEee------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecCC---CCCCC
Q 017317          199 KLLKYDPSLNETSILL------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENL---PGGPD  267 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~---~g~p~  267 (373)
                      -|..+|.-+|+.+--.      +.+.....++|++||..||..  .++.|..|+...+  ......++..+.   .|...
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            3555565555544221      223446789999999977766  4567888987422  211111111111   23344


Q ss_pred             ceeECCCC--CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecce
Q 017317          268 NIKLAPDG--SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFV  345 (373)
Q Consensus       268 ~i~~d~dG--~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~  345 (373)
                      .+++.+-.  .+-+++.+.+                                 -.|+. +-++.++..+....|    .+
T Consensus       212 c~a~sP~~~~~~a~gsY~q~---------------------------------~giy~-~~~~~pl~llggh~g----Gv  253 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQR---------------------------------VGIYN-DDGRRPLQLLGGHGG----GV  253 (406)
T ss_pred             eeeccCCCCcceeeecccce---------------------------------eeeEe-cCCCCceeeecccCC----Ce
Confidence            45555422  3444444432                                 11222 345667777765544    47


Q ss_pred             eEEEE--eCCEEEEeeCCCCeEEEeeCC
Q 017317          346 TSALE--FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       346 ~~~~~--~~g~L~vgs~~~~~i~~~~l~  371 (373)
                      |.+..  ++++||.|....+.|..-+|.
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeeh
Confidence            77765  457999999999999887765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=84.25  E-value=32  Score=31.24  Aligned_cols=144  Identities=14%  Similarity=0.098  Sum_probs=71.9

Q ss_pred             cceEEEecCCCEEEEe-cCCeEEEEE-cCC--ceE---EeeeecCccccCeEECCCCcEE-EEE-CCCcE--EEEe--cC
Q 017317           79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNG--TWE---NWKLIGGDTLLGITTTQENEIL-VCD-ADKGL--LKVT--EE  145 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g--~~~---~~~~~~~~p~~gl~~d~~g~L~-va~-~~~gl--~~~~--~~  145 (373)
                      -.++++..||.-++.. .++.|..++ .|-  +..   ...-..+.|. -++|.+|-+-+ |+- .+..|  |..+  .+
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d  167 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD  167 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence            4668888888877544 666666666 221  100   0111234677 78888777532 322 22334  3344  24


Q ss_pred             C-cEEEeeccCCccc---cccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc
Q 017317          146 G-VTVLASHVNGSRI---NLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (373)
Q Consensus       146 g-~~~l~~~~~~~~~---~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~  220 (373)
                      | ........+...+   +.+.-+.+. .++..|+...+                ..-.|..++.++.....+.......
T Consensus       168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq~~n  231 (420)
T KOG2096|consen  168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQSSN  231 (420)
T ss_pred             CCCCcccccccccccchhcccceEEEeecCCceEEEEec----------------CCCcEEEEecCCceeeeeccccccc
Confidence            5 3322222221111   112122222 24455555433                2246777887733333344444444


Q ss_pred             ceEEEccCCCEEEEEeCCC
Q 017317          221 NGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~  239 (373)
                      .--+++|+|+++.++...-
T Consensus       232 ~~aavSP~GRFia~~gFTp  250 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTP  250 (420)
T ss_pred             cceeeCCCCcEEEEecCCC
Confidence            5678999999877776543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.21  E-value=37  Score=31.82  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             CeEECCCCcEEEEECCCcEEEEe--cCCcEEEeeccCCccccccceeEEcCCCcEEEEeCC
Q 017317          121 GITTTQENEILVCDADKGLLKVT--EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~--~~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~  179 (373)
                      -+++..+|.+..+-...|.+|+-  ++-...+..   ......+.+|.+.+||.+.++.+.
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~~~~~eV~DL~FS~dgk~lasig~  206 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---IAHHAEVKDLDFSPDGKFLASIGA  206 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhh---HhhcCccccceeCCCCcEEEEecC
Confidence            45566666555443334444443  322111100   112246889999999988777543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=83.50  E-value=47  Score=32.48  Aligned_cols=82  Identities=17%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             EEEEecCCeEEEEEcCCceEEeee-ecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cE-EEeeccCCcccccccee
Q 017317           90 LYTATRDGWIKRLHKNGTWENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VT-VLASHVNGSRINLADDL  165 (373)
Q Consensus        90 l~v~~~~g~I~~~~~~g~~~~~~~-~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~-~l~~~~~~~~~~~~~~l  165 (373)
                      +.+.+.+|+++.+++.|+++.... .++... .-.+.+||.-.+.....|++++- ++| .+ .++..     ...+..+
T Consensus        78 ~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-----~~~v~c~  151 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-----EESIRCA  151 (737)
T ss_pred             EEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-----CceeEEE
Confidence            447778999999988888765432 233444 45677888755555557888776 778 43 23211     1346678


Q ss_pred             EEcCCC-cEEEEe
Q 017317          166 IAATDG-SIYFSV  177 (373)
Q Consensus       166 ~~~~dG-~l~v~~  177 (373)
                      +.+|+. ++.++.
T Consensus       152 ~W~p~S~~vl~c~  164 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQ  164 (737)
T ss_pred             EECCCCCceEEec
Confidence            888875 555554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=83.47  E-value=27  Score=31.40  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             CeEECCCCcEEEEEC-CCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCc
Q 017317          121 GITTTQENEILVCDA-DKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (373)
Q Consensus       121 gl~~d~~g~L~va~~-~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g  198 (373)
                      -+.|+|+|..++... .+.|+.++..| .+.... ..+ ....+.++...+|++..++.+.                 .-
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~-lkg-HsgAVM~l~~~~d~s~i~S~gt-----------------Dk  112 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV-LKG-HSGAVMELHGMRDGSHILSCGT-----------------DK  112 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceee-ecc-ccceeEeeeeccCCCEEEEecC-----------------Cc
Confidence            667889998887633 34577776334 332211 112 1235678888999988887654                 35


Q ss_pred             eEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          199 KLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      +|+.+|.++|+...- .....+.|.+.-..-|-.|+.+.+.+..+..||+.
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            789999988875542 23334455555455555555555666677777765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=83.02  E-value=40  Score=31.41  Aligned_cols=147  Identities=14%  Similarity=0.186  Sum_probs=78.6

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE--cCCc---eEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-c---CC-
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH--KNGT---WENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-E---EG-  146 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~--~~g~---~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~---~g-  146 (373)
                      +..+...++|++. +++..-+.+.++  .+-+   .........++. .+.+..+. ...|++..+-.+.++ -   .+ 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc-eeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            4455555677766 666655554444  2211   111122345666 77766444 566777655566665 1   14 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~  225 (373)
                      .+.+..     ......++++.+|+.+.++...               ...-+|.+|.. +...+.+ .+.-.+...+++
T Consensus       144 ~~~~lG-----hvSml~dVavS~D~~~IitaDR---------------DEkIRvs~ypa-~f~IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  144 CEPILG-----HVSMLLDVAVSPDDQFIITADR---------------DEKIRVSRYPA-TFVIESFCLGHKEFVSTISL  202 (390)
T ss_pred             cchhhh-----hhhhhheeeecCCCCEEEEecC---------------CceEEEEecCc-ccchhhhccccHhheeeeee
Confidence            222211     1235678999999977666322               11224444532 2222221 122234566777


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecC
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      .++  +++++..+++.++.+++..
T Consensus       203 ~~~--~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  203 TDN--YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             ccC--ceeeecCCCCcEEEEeccc
Confidence            654  3678888888899888753

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=82.98  E-value=1.1  Score=26.67  Aligned_cols=18  Identities=17%  Similarity=0.440  Sum_probs=15.8

Q ss_pred             ccceeEEcCCCcEEEEeC
Q 017317          161 LADDLIAATDGSIYFSVA  178 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~  178 (373)
                      .+++|++|++|++|++..
T Consensus        14 ~~~~IavD~~GNiYv~G~   31 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGY   31 (38)
T ss_pred             eEEEEEECCCCCEEEEEe
Confidence            578999999999999854

SBBP stands for Seven Bladed Beta Propeller.

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=82.97  E-value=45  Score=31.92  Aligned_cols=138  Identities=12%  Similarity=0.159  Sum_probs=81.8

Q ss_pred             cccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccc
Q 017317          118 TLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (373)
Q Consensus       118 p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~  194 (373)
                      .. +|++..+|.+.+.....|..++- .+|  +..+..+ .    ..+..|....+|+..++.+                
T Consensus       238 VT-~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-k----gPI~slKWnk~G~yilS~~----------------  295 (524)
T KOG0273|consen  238 VT-SLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-K----GPIFSLKWNKKGTYILSGG----------------  295 (524)
T ss_pred             cc-eEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-C----CceEEEEEcCCCCEEEecc----------------
Confidence            45 89999999988876667776665 566  4443221 1    1355778888887666643                


Q ss_pred             cCCceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC
Q 017317          195 KPHGKLLKYDPSLNETSILLDSLFFA-NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP  273 (373)
Q Consensus       195 ~~~g~l~~~d~~~~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  273 (373)
                       -.+.+..+|..++.+.+...-...| -.+.|-.+  .-+++......|++|.+.+..  ....+.. -.+-.+.+..++
T Consensus       296 -vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~--P~~t~~G-H~g~V~alk~n~  369 (524)
T KOG0273|consen  296 -VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR--PVKTFIG-HHGEVNALKWNP  369 (524)
T ss_pred             -CCccEEEEeccCceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCC--cceeeec-ccCceEEEEECC
Confidence             2467888888777766543322223 22333322  246666667778887775432  1222332 234456677777


Q ss_pred             CCCEEEEEec
Q 017317          274 DGSFWIAILQ  283 (373)
Q Consensus       274 dG~lwva~~~  283 (373)
                      .|.|..++..
T Consensus       370 tg~LLaS~Sd  379 (524)
T KOG0273|consen  370 TGSLLASCSD  379 (524)
T ss_pred             CCceEEEecC
Confidence            7777766554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.91  E-value=65  Score=33.68  Aligned_cols=68  Identities=12%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             CcCCcceEEEecCCCEEE-EecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe
Q 017317           75 ILNGPEDVCVDRNGVLYT-ATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (373)
Q Consensus        75 ~~~~P~~ia~d~~G~l~v-~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~  143 (373)
                      -...-.++.++|..++.+ .++++.|.++|.+.  .+.++.....+-. -++.+|..+||.|....|+..+-
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE
Confidence            345567788998666664 45788888888433  3556655566777 78888999999987767755443

>PHA02790 Kelch-like protein; Provisional

Probab=82.74  E-value=50  Score=32.32  Aligned_cols=64  Identities=8%  Similarity=-0.035  Sum_probs=35.3

Q ss_pred             cCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc-eEE-EccCCCEEEEEeCCC---CeE
Q 017317          168 ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN-GVA-LSKDEDYLVVCETFK---FRC  242 (373)
Q Consensus       168 ~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~-gi~-~~~dg~~l~v~~~~~---~~i  242 (373)
                      .-+|.||+..+..               ....+.+||+.++++..+.. +..+. +.+ ..-+| .+|+.....   ..+
T Consensus       316 ~~~~~iYviGG~~---------------~~~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g-~IYviGG~~~~~~~v  378 (480)
T PHA02790        316 PANNKLYVVGGLP---------------NPTSVERWFHGDAAWVNMPS-LLKPRCNPAVASINN-VIYVIGGHSETDTTT  378 (480)
T ss_pred             EECCEEEEECCcC---------------CCCceEEEECCCCeEEECCC-CCCCCcccEEEEECC-EEEEecCcCCCCccE
Confidence            3478999985420               11358899998777765432 22221 211 22244 489875422   346


Q ss_pred             EEEEec
Q 017317          243 LKYWLK  248 (373)
Q Consensus       243 ~~~~~~  248 (373)
                      .+|+..
T Consensus       379 e~ydp~  384 (480)
T PHA02790        379 EYLLPN  384 (480)
T ss_pred             EEEeCC
Confidence            677743

>KOG4328 consensus WD40 protein [Function unknown]

Probab=82.27  E-value=24  Score=33.56  Aligned_cols=148  Identities=13%  Similarity=0.048  Sum_probs=76.6

Q ss_pred             ceEEEec--CCCEE-EEecCCeEEEEEcCCc------eEEeeeecCccccCeEECCCC--cEEEEECCCcEEEEe-cCC-
Q 017317           80 EDVCVDR--NGVLY-TATRDGWIKRLHKNGT------WENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG-  146 (373)
Q Consensus        80 ~~ia~d~--~G~l~-v~~~~g~I~~~~~~g~------~~~~~~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~-~~g-  146 (373)
                      .++++.|  +-.+. +|+..|.|-.++-+++      +..+. ..+.|+.+|.+.+.+  .+|.+.+.+.|...| +.+ 
T Consensus       190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i  268 (498)
T KOG4328|consen  190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI  268 (498)
T ss_pred             EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence            4466666  22344 6777788877773221      12221 223444488888655  577776544344444 444 


Q ss_pred             cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEeecCCCCcceE
Q 017317          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGV  223 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~~gi  223 (373)
                      .+.+......  .....++.+.. ++.+++++..                  |.+-.+|..++.  .+.+.-.-...+++
T Consensus       269 ~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~------------------G~f~~iD~R~~~s~~~~~~lh~kKI~sv  328 (498)
T KOG4328|consen  269 SEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNV------------------GNFNVIDLRTDGSEYENLRLHKKKITSV  328 (498)
T ss_pred             hHHHhhcCcc--ceeeeeccccCCCccEEEeecc------------------cceEEEEeecCCccchhhhhhhccccee
Confidence            4433322111  01122334433 4567776543                  323334433332  22221111256789


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEec
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      ++.|...+++.+...++....||+.
T Consensus       329 ~~NP~~p~~laT~s~D~T~kIWD~R  353 (498)
T KOG4328|consen  329 ALNPVCPWFLATASLDQTAKIWDLR  353 (498)
T ss_pred             ecCCCCchheeecccCcceeeeehh
Confidence            9999988788877777777677754

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=81.99  E-value=66  Score=34.27  Aligned_cols=172  Identities=16%  Similarity=0.212  Sum_probs=97.8

Q ss_pred             CCCEE-EEecCCeEEEEEcCCceEEe--eeecCccccCeEECC-CCcEEEEECCCcEEEEe-cCC-c-EEEeeccCCccc
Q 017317           87 NGVLY-TATRDGWIKRLHKNGTWENW--KLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-EEG-V-TVLASHVNGSRI  159 (373)
Q Consensus        87 ~G~l~-v~~~~g~I~~~~~~g~~~~~--~~~~~~p~~gl~~d~-~g~L~va~~~~gl~~~~-~~g-~-~~l~~~~~~~~~  159 (373)
                      ++.+| .......|.+...++.....  ....-.+- +++.|- .+.+|-.+.......+. .+| . ..+....    .
T Consensus       448 ~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~----l  522 (877)
T KOG1215|consen  448 NNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKD----L  522 (877)
T ss_pred             CCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeEEEecC----C
Confidence            44555 33355667666655543322  22234566 888884 44688877654443333 345 2 3333221    1


Q ss_pred             cccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeC
Q 017317          160 NLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       160 ~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      ..+..++++|- |.+|.++.+.               . -++-|-..++.....+ ..+...|+|++++-..+.+||++.
T Consensus       523 ~~~r~~~v~p~~g~~~wtd~~~---------------~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~  586 (877)
T KOG1215|consen  523 DLPRSIAVDPEKGLMFWTDWGQ---------------P-PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADA  586 (877)
T ss_pred             CCccceeeccccCeeEEecCCC---------------C-chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcc
Confidence            35678899974 6788888651               1 1344444443333333 334688999999988888999998


Q ss_pred             CCC-eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          238 FKF-RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       238 ~~~-~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ... .+...+.+|..-.   .........|..++.- ++++|-..+.
T Consensus       587 ~~~~~i~~~~~~g~~r~---~~~~~~~~~p~~~~~~-~~~iyw~d~~  629 (877)
T KOG1215|consen  587 KLDYTIESANMDGQNRR---VVDSEDLPHPFGLSVF-EDYIYWTDWS  629 (877)
T ss_pred             cCCcceeeeecCCCceE---EeccccCCCceEEEEe-cceeEEeecc
Confidence            777 6888877764321   2222233456666653 3345444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=81.97  E-value=34  Score=29.88  Aligned_cols=73  Identities=10%  Similarity=0.040  Sum_probs=43.5

Q ss_pred             ccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC-CcceEEE-ccCCCEEE
Q 017317          157 SRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVAL-SKDEDYLV  233 (373)
Q Consensus       157 ~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~-~~~gi~~-~~dg~~l~  233 (373)
                      .+...+|+|-.||. +.|+++.+                  .+.+|.+|.++|+++....+.. .-..++. ...+  -+
T Consensus       112 ~evPeINam~ldP~enSi~~AgG------------------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~--qi  171 (325)
T KOG0649|consen  112 VEVPEINAMWLDPSENSILFAGG------------------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG--QI  171 (325)
T ss_pred             ccCCccceeEeccCCCcEEEecC------------------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc--ce
Confidence            34557899999965 67888753                  4789999999999887654421 1222322 2222  23


Q ss_pred             EEeCCCCeEEEEEecC
Q 017317          234 VCETFKFRCLKYWLKG  249 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~  249 (373)
                      .+...++.+..++.+.
T Consensus       172 lsG~EDGtvRvWd~kt  187 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDTKT  187 (325)
T ss_pred             eecCCCccEEEEeccc
Confidence            3333444555566543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=81.87  E-value=43  Score=30.95  Aligned_cols=54  Identities=20%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCC
Q 017317          121 GITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVAS  179 (373)
Q Consensus       121 gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~  179 (373)
                      .+++-|.|. +.-+..++.+..++ .+|  +..+...     ...+.-+.+..||.|.-+.+.
T Consensus       198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-----~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-----SEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             eEEEEecCCeeeecccccceeEEecccceeEEeccCc-----hHhEEEEEecCCeeEEEecCC
Confidence            445555553 33344455676666 667  3333221     125567788889999877654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.50  E-value=24  Score=32.80  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=49.6

Q ss_pred             EEecCCeEEEEEc-CCc--eEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCCcEEEeeccCCccccccceeE
Q 017317           92 TATRDGWIKRLHK-NGT--WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEGVTVLASHVNGSRINLADDLI  166 (373)
Q Consensus        92 v~~~~g~I~~~~~-~g~--~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~  166 (373)
                      ..+..+.+..||. .|+  +..+. ....|+..+...++|+ +|+++...-+..|| ..+. .+.....|. ...+.+|.
T Consensus       221 t~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~-tGsirsih  297 (412)
T KOG3881|consen  221 TITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGI-TGSIRSIH  297 (412)
T ss_pred             EEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCce-eeccccCCc-cCCcceEE
Confidence            4556677778873 332  11221 2234443777788886 78888766788898 5441 111112221 12577899


Q ss_pred             EcCCCcEEEEeC
Q 017317          167 AATDGSIYFSVA  178 (373)
Q Consensus       167 ~~~dG~l~v~~~  178 (373)
                      .+|.+.+..+.+
T Consensus       298 ~hp~~~~las~G  309 (412)
T KOG3881|consen  298 CHPTHPVLASCG  309 (412)
T ss_pred             EcCCCceEEeec
Confidence            998888877654

>PF15416 DUF4623: Domain of unknown function (DUF4623)

Probab=81.34  E-value=26  Score=32.04  Aligned_cols=59  Identities=10%  Similarity=-0.061  Sum_probs=36.5

Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-----CCCCCCceeECCCCCEEEEEecCC
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-----LPGGPDNIKLAPDGSFWIAILQLS  285 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~g~p~~i~~d~dG~lwva~~~~~  285 (373)
                      -||+++++........+.+.++.-+.+......-+     ...++-|+.--..|++|+++..+.
T Consensus       141 fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~  204 (442)
T PF15416_consen  141 FDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG  204 (442)
T ss_pred             CCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC
Confidence            37888888877665666665543333332221111     123677787778999999998763

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=81.22  E-value=43  Score=30.50  Aligned_cols=121  Identities=11%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             CeEECCCCcEEEEECC-CcEEEEe-cCC-cEEEeeccC-------CccccccceeEEc----CCCcEEEEeCCccccccc
Q 017317          121 GITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVN-------GSRINLADDLIAA----TDGSIYFSVASTKFGLHN  186 (373)
Q Consensus       121 gl~~d~~g~L~va~~~-~gl~~~~-~~g-~~~l~~~~~-------~~~~~~~~~l~~~----~dG~l~v~~~~~~~~~~~  186 (373)
                      ++..+++|++.|.... ..|+.++ ++| +........       +..+..-.+..+-    .++.|-+-|-.. ..   
T Consensus       148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~-~~---  223 (299)
T PF14269_consen  148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNAN-SD---  223 (299)
T ss_pred             eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCC-CC---
Confidence            7777889998887654 4588888 677 544322210       1112222333333    445554444210 00   


Q ss_pred             cccccccccCCceEEEEeCCCCeEEEeecCCCCcc--------eEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          187 WGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN--------GVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       187 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~--------gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                         ........+.++.+|+.++..+.+..-...+.        .+..-+.|+ ++++.....++..|+.+|
T Consensus       224 ---~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  224 ---FNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             ---CCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence               01122345788999988666554332111121        244556666 667766666666666444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=81.20  E-value=36  Score=31.97  Aligned_cols=148  Identities=13%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             CCcceEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeeecC-ccccCeEECCCCcEEEE-ECCCcEEE-Ee-cCC--cE
Q 017317           77 NGPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLIGG-DTLLGITTTQENEILVC-DADKGLLK-VT-EEG--VT  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~~~-~p~~gl~~d~~g~L~va-~~~~gl~~-~~-~~g--~~  148 (373)
                      ..-+++++.++...|++ +.+|.|..++ ...+.+.+....+ .+. .+.+++...|.+. ...+ +++ +| ++|  +.
T Consensus       181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDn-lVKlWDprSg~cl~  258 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLA  258 (464)
T ss_pred             hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCc-eeEeecCCCcchhh
Confidence            34567888887777754 4778787777 3333333322223 355 7888876655544 3334 555 45 566  22


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeecCCCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLDSLFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~~~~~~~gi~~~~  227 (373)
                      .+..     -.+.+.++.+.++|+...+.+.                 .-.+-.||..+ ++...+...-.....++++|
T Consensus       259 tlh~-----HKntVl~~~f~~n~N~Llt~sk-----------------D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP  316 (464)
T KOG0284|consen  259 TLHG-----HKNTVLAVKFNPNGNWLLTGSK-----------------DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP  316 (464)
T ss_pred             hhhh-----ccceEEEEEEcCCCCeeEEccC-----------------CceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence            2211     1235667889999976665432                 22344455431 11211111122345677788


Q ss_pred             CCCEEEEEeCCCCeEEEEEec
Q 017317          228 DEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      --..|+++....+.|+.+.+.
T Consensus       317 ~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  317 LNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ccccceeeccCCCceEEEecc
Confidence            777788888888888877654

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=80.79  E-value=3  Score=24.93  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=17.5

Q ss_pred             eEEEecCCCEEEEecCCeEEEEEc
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLHK  104 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~~  104 (373)
                      +++++ +|.+|+++.+|.++.+|.
T Consensus        16 ~~~v~-~g~vyv~~~dg~l~ald~   38 (40)
T PF13570_consen   16 SPAVA-GGRVYVGTGDGNLYALDA   38 (40)
T ss_dssp             --EEC-TSEEEEE-TTSEEEEEET
T ss_pred             CCEEE-CCEEEEEcCCCEEEEEeC
Confidence            34666 789999999999999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=80.60  E-value=36  Score=29.25  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=17.5

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRL  102 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~  102 (373)
                      +.-+++++.|.|.|| +|+ +..-+++
T Consensus        33 qairav~fhp~g~lyavgs-nskt~ri   58 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGS-NSKTFRI   58 (350)
T ss_pred             hheeeEEecCCCceEEecc-CCceEEE
Confidence            557889999999999 555 3334443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=80.48  E-value=4.2  Score=41.95  Aligned_cols=65  Identities=17%  Similarity=0.221  Sum_probs=48.9

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~  143 (373)
                      =.++|.+.+|.|-||+.+|.|..++..|+ .++.....|.|..||.+..||+-.+|+-..-|+.++
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            35688888999999999999999996653 233333446776599999999988887666676665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	373
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		5e-15
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		6e-15
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-13

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N++ + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 90  QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                   +  +   G+L+KYDPS  ET++LL  L    G  +S D  +++V E    + 
Sbjct: 150 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           +KYWL+G  K   E+ V+ +P  P NIK   DG FW++
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N++ + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 81  QNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 140
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                   +  +   G+L+KYDPS  ET++LL  L    G  +S D  +++V E    + 
Sbjct: 141 DDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQI 200
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           +KYWL+G  K   E+ V+ +P  P NIK   DG FW++
Sbjct: 201 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 236

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 126 QENEILVCDADKGLLKVTEEG--VTVLASHVNGSRIN-LADDLIAATDGSIYFSVASTKF 182
           Q N+  + D    L  V  EG   T LA+ V+G     L    +    G +YF+  ST +
Sbjct: 90  QNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLY 149
Query: 183 GLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRC 242
                      +   G+L KYDPS  ET++L   L    G  +S D  +++V E    + 
Sbjct: 150 DDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQI 209
Query: 243 LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           +KYWL+G  K   E+ V+ +P  P NIK   DG FW++
Sbjct: 210 VKYWLEGPKKGTAEVLVK-IP-NPGNIKRNADGHFWVS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	4e-39
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	7e-24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	2e-18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	1e-16
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	7e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	2e-14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	8e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	5e-08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	4e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  243 bits (621), Expect = 1e-78
 Identities = 72/336 (21%), Positives = 113/336 (33%), Gaps = 51/336 (15%)

Query: 61  TTSDIQSVTRLGEGILNGPEDVCVDRNG-VLYTATRDGWIKRLHKNG--------TWENW 111
             S       L E     P     D      YT+ +DG + +                 W
Sbjct: 3   ALSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW 62

Query: 112 KLIGGDTL------------LGIT-TTQENEILVCDADKGLLKVTEEG--VTVLASHVNG 156
                +                I+   Q N++ + D    L  V  EG   T LA+ V+G
Sbjct: 63  NKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDG 122

Query: 157 SRINLADDL-IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD 215
                   + +    G +YF+  ST +        +  +   G+L+KYDPS  ET++LL 
Sbjct: 123 VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK 182

Query: 216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG 275
            L    G  +S D  +++V E    + +KYWL+G  K   E+ V  +P  P NIK   DG
Sbjct: 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIP-NPGNIKRNADG 240

Query: 276 SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFE 335
            FW++  +     +                                +     G ++    
Sbjct: 241 HFWVSSSEELDGNM------------------------HGRVDPKGIKFDEFGNILEVIP 276

Query: 336 DPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK 371
            P            E D  LY+G+L    +G L   
Sbjct: 277 LPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  141 bits (357), Expect = 4e-39
 Identities = 57/369 (15%), Positives = 119/369 (32%), Gaps = 54/369 (14%)

Query: 30  LLAFTLQIFFFSPISPDLLLLPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGV 89
           L A TL     +             +     T  ++ +   + +GI NG ED+ +  NG+
Sbjct: 4   LTALTLLGMGLALFDRQKSSFQTRFNVHREVTPVELPNCNLV-KGIDNGSEDLEILPNGL 62

Query: 90  LYTATRDGWIKRLH----------------KNGTWENWKLIGGDT------LLGITTTQE 127
            + ++   +   +                 K       ++IG           GI+T  +
Sbjct: 63  AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122

Query: 128 NE----ILVCDADKG------LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSV 177
           ++    +LV +               EE   +    +    +   +D++A      Y + 
Sbjct: 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182

Query: 178 ASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET 237
                  +    ++        +  Y P  N+  ++ +   FANG+ +S D  Y+ + E 
Sbjct: 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAEL 240

Query: 238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSK 296
              +   Y         T + V +     DNI + P  G  W+           +   + 
Sbjct: 241 LAHKIHVYEKHAN-WTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 299

Query: 297 ATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLY 356
               +L       ++   L ++  V  V         + + NG V+   T A  +   L 
Sbjct: 300 PGSEVL-------RIQDILSEEPKVTVV---------YAE-NGTVLQGSTVAAVYKGKLL 342

Query: 357 LGSLNTNFI 365
           +G++    +
Sbjct: 343 IGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 99.4 bits (248), Expect = 7e-24
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 28/238 (11%)

Query: 67  SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWI-----KRLHK----NGTWENWKLIGGD 117
             T++ E  + G E    D+NG  Y    +  +       + +     G          +
Sbjct: 9   LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN 67

Query: 118 TLLGIT-----TTQENEILVCDADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATD 170
              GI          N++ V D   GLL V  +G    +      G R+   +D     +
Sbjct: 68  GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE 127

Query: 171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED 230
           G+++ +  +    +          +  G +  +     +   +  +  F NG+A+    D
Sbjct: 128 GNLWIT--APAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMND 184

Query: 231 ----YLVVCETFKFRCLKYWLKGESK-EQTEIFVE---NLPGGPDNIKLAPDGSFWIA 280
                L+V ET   +   Y +KG +K E  +++        GG D +    D +  +A
Sbjct: 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 44/251 (17%), Positives = 84/251 (33%), Gaps = 20/251 (7%)

Query: 41  SPISPDLLLLPPASSASLIPTTSDIQSVT---RLGEGILNGPEDVCVDRNGVLY-TATRD 96
            P   D   +  A+ A+ +     + ++       EG    P     +    L  +    
Sbjct: 14  VPADCDPPRITHAALAARLGDAR-LLTLYDQATWSEG----P--AWWEAQRTLVWSDLVG 66

Query: 97  GWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEE--GVTVLASHV 154
             +    ++GT +        T  G     +  ++ C+  +  +  ++      +L    
Sbjct: 67  RRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRY 125

Query: 155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL 214
            G R+N  +DLI A DG+I+F+         + G        H  + +  P  +     +
Sbjct: 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRM 184

Query: 215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEI-----FVENLPGGPDNI 269
             L   NG+A S DE  L V +T +       +   +     +     F     G PD  
Sbjct: 185 ADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGF 244

Query: 270 KLAPDGSFWIA 280
            +   G  W +
Sbjct: 245 CVDRGGWLWSS 255

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 17/233 (7%)

Query: 56  ASLIPTTSDIQSVT---RLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENW 111
             L P  ++ + +       EG    P  V V     +  +  R         +G     
Sbjct: 11  LDLFPAGAEARRLADGFTWTEG----P--VYVPARSAVIFSDVRQNRTWAWSDDGQLSPE 64

Query: 112 KLIGGDTLLGITTTQENEILVCD-ADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAA 168
                    G    ++  ++ C    + L +  E G     +A    G ++N  +D+  A
Sbjct: 65  MHPSHHQN-GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA 123

Query: 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228
            DGS++FS  +        G       P   + +  P     S  +      NG+A    
Sbjct: 124 PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPS 182

Query: 229 EDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDGSFWIA 280
            + L+V +T      +Y L    + E   +     PG  D +++   G  W +
Sbjct: 183 GN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 49/263 (18%)

Query: 45  PDLLLLPPASSASLIPTTSDIQSVT------RLGEGILNGPEDVCVDRNGVLYTATRDGW 98
           P L     ++SA  I + S++Q++T         +G+    E +  DR G L+       
Sbjct: 9   PTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQ--LEGLNFDRQGQLF------L 60

Query: 99  I----KRLHK----NGTWENWKLIGGDTLLGITTTQENEILVCD-----ADKGLLKVTEE 145
           +      + K        +   +        I   ++  + VC      +  G+   TE 
Sbjct: 61  LDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 120

Query: 146 G--VTVLASHVNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK 202
           G  +  +   ++ +  I+   D++  + G  YF+                   P G +  
Sbjct: 121 GDNLQDIIEDLSTAYCID---DMVFDSKGGFYFT-----------DFRGYSTNPLGGVYY 166

Query: 203 YDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK-----GESKEQTEI 257
             P     + ++ ++  ANG+ALS DE  L V ET   R  +  L+      +    T  
Sbjct: 167 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226

Query: 258 FVENLPGGPDNIKLAPDGSFWIA 280
           +      GPD+  +  D + ++A
Sbjct: 227 YYFTGHEGPDSCCIDSDDNLYVA 249

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 72.3 bits (177), Expect = 2e-14
 Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 24/238 (10%)

Query: 50  LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW 108
           LPP  +   I      + +T          E++    +G ++ T    G I  +  +G  
Sbjct: 8   LPPIYADKPIELA-PAKIITSFPVNTF--LENLASAPDGTIFVTNHEVGEIVSITPDGNQ 64

Query: 109 ENWKLIGGDTLLGITTTQENEILVCDADKG----LLKVTEEG-VTVLASHVNGSRINLAD 163
           +    + G  + G+  T   +++    +      +  V  +G V  L +  +   +N   
Sbjct: 65  QIHATVEG-KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN--- 120

Query: 164 DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV 223
            +   +D     + +        W +D+   +P G +    P L  ++       F    
Sbjct: 121 GITPLSDTQYLTADSYRGAI---WLIDV--VQPSGSIWLEHPMLARSN---SESVFPAAN 172

Query: 224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQT-EIFVENLPGGPDNIKLAPDGSFWIA 280
            L +  ++L V  T K   L+  +    K    EIFVE      D+     +G+ + A
Sbjct: 173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGA 228

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 29/214 (13%)

Query: 72  GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTL-LGITTTQENE 129
                     + +  +G ++ T      I R+ K G  + + L   D+   GIT     +
Sbjct: 52  LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111

Query: 130 ILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
           I   + +   + ++T++G +        GS  +    +   +D +++F+           
Sbjct: 112 IWFTEMNGNRIGRITDDGKIREYELPNKGSYPS---FITLGSDNALWFT---------EN 159

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCETFKFRCLKYW 246
                    +  + +   S + T   + +      G+    D D L   E    +  +  
Sbjct: 160 Q--------NNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRIT 210

Query: 247 LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
             G   E TE  +      P  I        W  
Sbjct: 211 TSG---EITEFKIPTPNARPHAITAGAGIDLWFT 241

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 30/212 (14%), Positives = 68/212 (32%), Gaps = 29/212 (13%)

Query: 74  GILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDT-LLGITTTQENEIL 131
               GP  + V   G ++ T  +   I  ++ +G    + L   D  ++ +T + + E+ 
Sbjct: 12  NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVW 71

Query: 132 VCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL 189
             +     + ++T++G +         S       +    +G I+F+  +          
Sbjct: 72  FTENAANKIGRITKKGIIKEYTLPNPDSAPY---GITEGPNGDIWFTEMNG--------- 119

Query: 190 DLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDYLVVCETFKFRCLKYWLK 248
                    ++ +           L +   + + + L  D + L   E       +    
Sbjct: 120 --------NRIGRITDDGKIREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRITES 170

Query: 249 GESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           G+    TE  +     GP  I    D + W  
Sbjct: 171 GDI---TEFKIPTPASGPVGITKGNDDALWFV 199

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 27/181 (14%)

Query: 59  IPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG-G 116
           I     I+  T       + P  +    NG ++ T      I R+  +G    ++L   G
Sbjct: 83  ITKKGIIKEYT--LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKG 140

Query: 117 DTLLGITTTQENEILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIY 174
                IT   +N +   +     + ++TE G +T        S       +    D +++
Sbjct: 141 SYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPV---GITKGNDDALW 197

Query: 175 FSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLV 233
           F                       K+ +   S   T   +       + +      D   
Sbjct: 198 FVEIIG-----------------NKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWF 240

Query: 234 V 234
            
Sbjct: 241 T 241

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 31/229 (13%)

Query: 57  SLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG 115
           S       ++          +GP  +    +G ++ T  +   I  L ++G  + +++  
Sbjct: 2   SEAWMNFYLEEFNLSIPD--SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPT 59

Query: 116 GDT-LLGITTTQENEILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS 172
            D  ++ +  +   +I   +     + K++++G  T        S       +    +G 
Sbjct: 60  PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY---GITEGLNGD 116

Query: 173 IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF-FANGVALSKDEDY 231
           I+F+  +                   ++ K           L +   +   + L  D + 
Sbjct: 117 IWFTQLNG-----------------DRIGKLTADGTIYEYDLPNKGSYPAFITLGSD-NA 158

Query: 232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
           L   E       +    G+     E  +      P  I    DG+ W  
Sbjct: 159 LWFTENQNNSIGRITNTGKL---EEYPLPTNAAAPVGITSGNDGALWFV 204

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 29/214 (13%)

Query: 72  GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIG-GDTLLGITTTQENE 129
                +GP  +    NG ++ T      I +L  +GT   + L   G     IT   +N 
Sbjct: 99  LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158

Query: 130 ILVCDADKG-LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW 187
           +   +     + ++T  G +       N +       + +  DG+++F            
Sbjct: 159 LWFTENQNNSIGRITNTGKLEEYPLPTNAAA---PVGITSGNDGALWFV---------EI 206

Query: 188 GLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYW 246
                      K+ +   +   +   +       + +   K+   +   E    +  +  
Sbjct: 207 M--------GNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGANQIGRIT 257

Query: 247 LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
                    E  ++     P  I    DGS W A
Sbjct: 258 NDNTI---QEYQLQTENAEPHGITFGKDGSVWFA 288

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 33/242 (13%)

Query: 62  TSDIQSVTRLGEGILNGPEDVCVDRNGVLYTA-TRDGWIKRLHKNGTWENWKLIGGDTLL 120
            +     T L    L  P+ + VD  G +Y     +  +     +         G +   
Sbjct: 52  ATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE 111

Query: 121 GITTTQENEILVCDADKG-LLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIYFSVAS 179
           G+    +  + V D     ++K+     T       G  +N  D +     G++Y  V  
Sbjct: 112 GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--LNDPDGVAVDNSGNVY--VTD 167

Query: 180 TKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETF 238
           T     N            +++K +   N   +L    +    G+A+ +    + V E  
Sbjct: 168 T----DN-----------NRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHN 211

Query: 239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA------ILQLSSPGLEFV 292
             + +K      +         N P     + +  D + ++A      +++L+S      
Sbjct: 212 TNQVVKLLAGSTTSTVLPFTGLNTPLA---VAVDSDRTVYVADRGNDRVVKLTSLE-HHH 267

Query: 293 HT 294
           H 
Sbjct: 268 HH 269

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 8/85 (9%)

Query: 68  VTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLL----GI 122
           V + G  IL  P  V VD  G +     +   +    +NG   +    G    L    G+
Sbjct: 112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHK--FGCSKHLEFPNGV 169

Query: 123 TTTQENEILVCDADKGLLKV-TEEG 146
               + EI + D     +KV   EG
Sbjct: 170 VVNDKQEIFISDNRAHCVKVFNYEG 194

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 72  GEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK---NGTWENWKLIGGDTL---LGITTT 125
            +  L  P  V V RN      T      ++      G +   +  G   L    G+T  
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF--VRKFGATILQHPRGVTVD 129

Query: 126 QENEILVCDADKG-LLKVTEEGVTV 149
            +  I+V +     ++   + G  +
Sbjct: 130 NKGRIIVVECKVMRVIIFDQNGNVL 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 47/292 (16%), Positives = 95/292 (32%), Gaps = 104/292 (35%)

Query: 99  IKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDAD--KGL---LKVTEEGV---- 147
           I    ++G  TW+NWK +  D L   TT  E+ + V +    + +   L V         
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 148 TVLASHVNGSRINLADDLIAATDGSIY-----FSVA-----STKFGLHNWGLDLL----- 192
            +L+         +  D+I +    +      +S+       +   + +  L+L      
Sbjct: 390 ILLSL--------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 193 EAKPHGKLL-KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGES 251
           E   H  ++  Y+             F ++ +     + Y      +    + + LK   
Sbjct: 442 EYALHRSIVDHYNIPKT---------FDSDDLIPPYLDQYF-----YSH--IGHHLKN-- 483

Query: 252 KEQTEI------------FVENLPGGPDNIKLAPDGSFWIA-------ILQL-------- 284
            E  E             F+E         K+  D + W A       + QL        
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQ--------KIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 285 -SSPGLE--------FVHTSKATKHLLAA-FPKLIKLVAPLHKKAAVVNVAA 326
            + P  E        F+   K  ++L+ + +  L+++ A + +  A+   A 
Sbjct: 536 DNDPKYERLVNAILDFLP--KIEENLICSKYTDLLRI-ALMAEDEAIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 38/257 (14%), Positives = 80/257 (31%), Gaps = 63/257 (24%)

Query: 132 VCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAATDGSIY--FSVASTKFGLHNWGL 189
           V D  K +L   EE   ++ S    S        + +    +   F     +   + + +
Sbjct: 38  VQDMPKSILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLM 95

Query: 190 DLLEAKPHGKLLKYDPSLNETSIL--LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL 247
             ++ +         PS+     +   D L+  N V  +K      V     +  L+  L
Sbjct: 96  SPIKTEQR------QPSMMTRMYIEQRDRLYNDNQV-FAKYN----VSRLQPYLKLRQAL 144

Query: 248 KGESKEQTEIFVENLPG-GPDNIK--LA-------------PDGSFWIAILQLSSPGL-- 289
             E +    + ++ + G G    K  +A                 FW+ +   +SP    
Sbjct: 145 L-ELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 290 ---------------EFVHTSKATKHLLAAFPKLIK--LVAPLHKKAAVV--NVAANGIV 330
                               S   K  + +    ++  L +  ++   +V  NV  N   
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKA 258

Query: 331 IRKFEDPNGKVMSFVTS 347
              F + + K++  +T+
Sbjct: 259 WNAF-NLSCKIL--LTT 272

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Length = 326

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 43/265 (16%), Positives = 77/265 (29%), Gaps = 56/265 (21%)

Query: 41  SPISPDLLLLPPASSASLIPTTSDIQ------SVTRLGEGILNGPEDVCVDRNGVLYTAT 94
           +P+S    ++ P+   SL  T           +   LGEG            +G  +   
Sbjct: 15  APLSHSRPMMQPSEDKSL-ATVFPFAGRVLDETPMLLGEGP------TFDPASGTAW--- 64

Query: 95  RDGWI----KRLH----KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG 146
              W     + LH     +G      L     +        +   +  +D GL       
Sbjct: 65  ---WFNILERELHELHLASGRKTVHAL---PFMGSALAKISDSKQLIASDDGLFLRDTAT 118

Query: 147 -----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL 201
                   L S + G+R N   D      G+++              +        G + 
Sbjct: 119 GVLTLHAELESDLPGNRSN---DGRMHPSGALWIG-----------TMGRKAETGAGSIY 164

Query: 202 KYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL---KGESKEQTEIF 258
                  + + L   +   N +  S D       +T   R ++  L    G    + E+F
Sbjct: 165 HVAK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF 222

Query: 259 VE--NLPGGPDNIKLAPDGSFWIAI 281
           ++   + GG D      +G  W A 
Sbjct: 223 IDSTGIKGGMDGSVCDAEGHIWNAR 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.95
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.9
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.89
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.83
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.8
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.7
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.67
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.67
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.67
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.66
3ott_A	758	Two-component system sensor histidine kinase; beta	99.65
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.64
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.64
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.64
3ott_A	758	Two-component system sensor histidine kinase; beta	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.6
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.56
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.54
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.53
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.53
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.45
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.41
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.39
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.38
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.38
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.32
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.32
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.27
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.26
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.23
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.19
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.18
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.18
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.12
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.12
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.09
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.05
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.04
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.04
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.01
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.98
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.98
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.97
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.95
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.92
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.89
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.88
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.86
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.85
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.83
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.78
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.75
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.75
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.74
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.74
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.72
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.71
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.7
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.7
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.7
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.69
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.66
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.65
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.65
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.65
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.64
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.64
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.63
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.63
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.62
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.62
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.6
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.59
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.58
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.57
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.57
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.56
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.56
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.56
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.55
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.53
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.53
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.53
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.51
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.5
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.5
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.49
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.49
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.48
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.47
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.47
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.47
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.47
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.46
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.45
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.44
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.44
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.43
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.43
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.43
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.41
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.41
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.41
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.4
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.39
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.39
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.39
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.39
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.38
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.38
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.36
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.36
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.36
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.36
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.35
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.34
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.34
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.32
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.3
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.3
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.3
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.29
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.28
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.28
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.27
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.26
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.25
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.23
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.22
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.19
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.18
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.18
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.15
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.15
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.14
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.13
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.12
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.11
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.11
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.11
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.1
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.09
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.06
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.05
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.03
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.02
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.97
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.93
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.91
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	97.89
3jro_A	753	Fusion protein of protein transport protein SEC13	97.89
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.88
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.83
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.81
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.8
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.8
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.79
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.79
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.77
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.77
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.71
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.68
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.63
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.63
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.61
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.59
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.55
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.54
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.54
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.53
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.44
2pm7_B	297	Protein transport protein SEC13, protein transport	97.43
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.41
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.38
3jro_A	753	Fusion protein of protein transport protein SEC13	97.37
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.35
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.35
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.32
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.32
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.3
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.3
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.26
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.23
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.15
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.08
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.07
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.05
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.01
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.01
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.94
2pm7_B	297	Protein transport protein SEC13, protein transport	96.89
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	96.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.76
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.71
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.6
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	96.42
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.41
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.31
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.28
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	96.15
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	95.56
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.37
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.03
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	94.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.57
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.53
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.16
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	91.56
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	90.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	89.65
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.71
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	87.48
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	86.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.9
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.63
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	84.62
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	83.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.83
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	80.2

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=1.4e-32  Score=252.70  Aligned_cols=272  Identities=25%  Similarity=0.423  Sum_probs=216.3

Q ss_pred             CCcCCcceEEEecCCC-EEEEecCCeEEEEEcCC-ceEEeee--------------------ecCccccCeEECC-CCcE
Q 017317           74 GILNGPEDVCVDRNGV-LYTATRDGWIKRLHKNG-TWENWKL--------------------IGGDTLLGITTTQ-ENEI  130 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~-l~v~~~~g~I~~~~~~g-~~~~~~~--------------------~~~~p~~gl~~d~-~g~L  130 (373)
                      |.+..|+++++|++|+ +|++..+++|++++.++ +++.+..                    ..+.|. ||++++ +|+|
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l   94 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQL   94 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEE
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcE
Confidence            5578999999999998 88999999999999654 5655532                    124688 999996 8999


Q ss_pred             EEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317          131 LVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       131 ~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      ||++..+++++++ .++ .+.+.....+.++..++++++++ +|+|||++...+++...+...+.+....++|+++|+++
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            9999888899999 446 66665555555667899999999 99999999765454443333444455668999999988


Q ss_pred             CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCc
Q 017317          208 NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSP  287 (373)
Q Consensus       208 ~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~  287 (373)
                      ++.+.+...+..|+|+++++||+.|||+++.+++|++|++++...+..+.+.. .++ |+++++|++|+|||++...+..
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccc
Confidence            88877777788999999999999999999999999999998765555566653 567 9999999999999999764321


Q ss_pred             hhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEE
Q 017317          288 GLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGK  367 (373)
Q Consensus       288 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~  367 (373)
                      .                 |       .....+.+.+++++|+.+..+..++|..+..++.+.+.+++||+++..+++|.+
T Consensus       253 ~-----------------~-------~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          253 N-----------------M-------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             S-----------------T-------TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEE
T ss_pred             c-----------------c-------cCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEE
Confidence            1                 0       012346799999999999999988887667788888888999999999999999


Q ss_pred             eeCCC
Q 017317          368 LPLKA  372 (373)
Q Consensus       368 ~~l~~  372 (373)
                      +++..
T Consensus       309 ~~~~~  313 (322)
T 2fp8_A          309 LVYDK  313 (322)
T ss_dssp             EEC--
T ss_pred             Eeccc
Confidence            99863

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.96  E-value=5.3e-27  Score=215.70  Aligned_cols=273  Identities=20%  Similarity=0.299  Sum_probs=195.8

Q ss_pred             EeccCCcCCcceEEEecCCCEEEEe-------------cCCeEEEEEcC---CceEEeeeec-------CccccCeEECC
Q 017317           70 RLGEGILNGPEDVCVDRNGVLYTAT-------------RDGWIKRLHKN---GTWENWKLIG-------GDTLLGITTTQ  126 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~v~~-------------~~g~I~~~~~~---g~~~~~~~~~-------~~p~~gl~~d~  126 (373)
                      ...++...+||+|+++++|.+|+++             ..|.|++++.+   ++.+.+....       .+|+ ||.+.+
T Consensus        43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~~~~  121 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFI  121 (355)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEEEEE
T ss_pred             EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeEEEE
Confidence            3345545799999999999999986             68999999954   4555444332       4899 999854


Q ss_pred             --CC--cEEEEECCCc-----EEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccc-cccccccc
Q 017317          127 --EN--EILVCDADKG-----LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW-GLDLLEAK  195 (373)
Q Consensus       127 --~g--~L~va~~~~g-----l~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~-~~~~~~~~  195 (373)
                        +|  +|||++...+     +++++.++ ...+.....+.+++.+|+++++++|++|+++... |.-... ..+..+..
T Consensus       122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~~~~  200 (355)
T 3sre_A          122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGL  200 (355)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHHTTC
T ss_pred             CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhhccC
Confidence              45  5999987533     78888544 5555566677888999999999999999997531 111100 01112234


Q ss_pred             CCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC-CCcceeEEecCCCCCCCceeECC-
Q 017317          196 PHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAP-  273 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~-  273 (373)
                      ..|+||++|+.  +.+.+.+++..|||++++||++++||+++..++|++|++++. +....+.+  ..++.|||+++|+ 
T Consensus       201 ~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e  276 (355)
T 3sre_A          201 AWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPV  276 (355)
T ss_dssp             CCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTT
T ss_pred             CccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCC
Confidence            67899999984  667778889999999999999999999999999999998743 34444444  3578999999999 


Q ss_pred             CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC----CCCcEEEEEeCCCCceecceeEEE
Q 017317          274 DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA----ANGIVIRKFEDPNGKVMSFVTSAL  349 (373)
Q Consensus       274 dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~----~~g~~~~~~~~~~g~~~~~~~~~~  349 (373)
                      +|++|+|...+..             ++...-|.       ...-..+.++.    .++++.+.|.+ +|+.+...|.+.
T Consensus       277 ~G~lwva~~~~g~-------------~v~~~~P~-------~~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~T~a~  335 (355)
T 3sre_A          277 TGDLWVGCHPNGM-------------RIFFYDAE-------NPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAA  335 (355)
T ss_dssp             TCCEEEEEESCHH-------------HHHSCCTT-------SCCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSEEEEE
T ss_pred             CCcEEEEecCCce-------------EEEEECCC-------CCCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEeeEEEE
Confidence            5999998753311             11111111       01112355554    57888888887 888888889888


Q ss_pred             EeCCEEEEeeCCCCeEEEeeC
Q 017317          350 EFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       350 ~~~g~L~vgs~~~~~i~~~~l  370 (373)
                      ..+|+||+|++..+ +..++|
T Consensus       336 ~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          336 VYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             EETTEEEEEESSSC-EEEEEC
T ss_pred             EECCEEEEEEcCCC-ceeccC
Confidence            88999999999887 555553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.96  E-value=1.9e-26  Score=210.00  Aligned_cols=257  Identities=19%  Similarity=0.264  Sum_probs=197.1

Q ss_pred             ceeEeccCCcCCcceEEEecCCC--EEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT  143 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~--l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~  143 (373)
                      .++++.++ +..+|+.+++++|+  +|++..+++|++++.+|+.+.+....+.+. +++++++|+||+++.. .+|.+++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEEC
Confidence            56677777 57799999999887  457778899999998888777766677888 9999999999999865 5799998


Q ss_pred             cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccc--ccccccCCceEEEEeCCCCeEEEeecCCCCc
Q 017317          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL--DLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (373)
Q Consensus       144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~  220 (373)
                      .+| .+.+.....+.+++.+++++++++|++||+|..  ||......  ........++|+++|+++++.+.+. .+..|
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            558 777665556666778999999999999999864  22211000  0001123468999999878877666 77889


Q ss_pred             ceEEEccCCCEEEEEeCCC-----CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCC
Q 017317          221 NGVALSKDEDYLVVCETFK-----FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTS  295 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~  295 (373)
                      +|+++++|++.||++++..     ++|++|++++......+.+.....+.|+++++|++|+||+++..            
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~------------  258 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT------------  258 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS------------
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC------------
Confidence            9999999999999999863     78999998764433444555445678999999999999999843            


Q ss_pred             hHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe--CCEEEEeeCCCCeEEEeeCC
Q 017317          296 KATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       296 p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~  371 (373)
                                              .|.+++++|+.+..+..+.+     ++.+.+.  +++||+++..  .|.+++++
T Consensus       259 ------------------------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~~--~l~~~~~~  305 (305)
T 3dr2_A          259 ------------------------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGGP--CLWMLPLP  305 (305)
T ss_dssp             ------------------------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEETT--EEEEEECC
T ss_pred             ------------------------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcCC--eEEEEECC
Confidence                                    38999999999998887652     4555553  4689999964  68888764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.95  E-value=1.2e-24  Score=196.94  Aligned_cols=256  Identities=17%  Similarity=0.254  Sum_probs=190.9

Q ss_pred             ceeEeccCCcCCcceEEEecCCC--EEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT  143 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~--l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~  143 (373)
                      ..+.+.++ +..||+++++++|+  +|++..+++|+++++++..+.+......|. +++++++|+||+++.. .+|.+++
T Consensus        19 ~~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEc
Confidence            44566655 67899999999987  457778899999996655666655566788 9999999999999865 6799999


Q ss_pred             -cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccc--cccccccCCceEEEEeCCCCeEEEeecCCCC
Q 017317          144 -EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG--LDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (373)
Q Consensus       144 -~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  219 (373)
                       .+| .+.+.....+.....+++++++++|++|+++..  ++.....  .........++|++++++ ++.+.+......
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence             578 666654444555667899999999999999753  1110000  000011134689999998 777777778888


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecC-CCC-cceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChH
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKG-ESK-EQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKA  297 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~-~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~  297 (373)
                      |+++++++|++.+ ++++..++|++|++++ ... .....+ ....+.|+++++|++|+||+++ .+             
T Consensus       174 ~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~-------------  237 (296)
T 3e5z_A          174 PNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GD-------------  237 (296)
T ss_dssp             EEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TT-------------
T ss_pred             CccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CC-------------
Confidence            9999999999977 9999999999999862 233 223344 3455789999999999999999 33             


Q ss_pred             HHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe--C-CEEEEeeCCCCeEEEeeCCC
Q 017317          298 TKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF--D-DHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~-g~L~vgs~~~~~i~~~~l~~  372 (373)
                                            .|.+++++|+.+..+..+.+     ++.+.+.  + ++||+++.  +.|.++++..
T Consensus       238 ----------------------~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~  286 (296)
T 3e5z_A          238 ----------------------GVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIETNV  286 (296)
T ss_dssp             ----------------------EEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEECSC
T ss_pred             ----------------------eEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEccc
Confidence                                  48999999999998876653     4555553  2 47999996  4699998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.93  E-value=2.8e-23  Score=188.34  Aligned_cols=245  Identities=13%  Similarity=0.134  Sum_probs=179.8

Q ss_pred             EeccCCcCCcceEEEec-CCCEEE-EecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cC
Q 017317           70 RLGEGILNGPEDVCVDR-NGVLYT-ATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE  145 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~-~G~l~v-~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~  145 (373)
                      .+......-+|+.++++ ++.||+ +..+++|+++++++ +.+.+ .....+. +++++++|+||++. ..+|++++ .+
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~~   82 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVS-SVALRQSGGYVATI-GTKFCALNWKE   82 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEE-EEEEBTTSSEEEEE-TTEEEEEETTT
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceE-EEEECCCCCEEEEE-CCeEEEEECCC
Confidence            33333356789999998 677774 55789999999654 44433 3456788 99999999999998 47899999 66


Q ss_pred             C-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          146 G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       146 g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                      + .+.+.....+.+...++++++|++|++|+++......      ........+.||+++++ ++...+...+..|+|++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceE
Confidence            7 7666554444456678999999999999997531100      00011245789999987 55666667778899999


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEec--CCCCcceeEEec--CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHH
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLK--GESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKH  300 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~  300 (373)
                      +++|++.|||+++..++|++|+++  .......+.+..  ...+.|+++++|++|+||++++.+                
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~----------------  219 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG----------------  219 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT----------------
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC----------------
Confidence            999999999999999999999974  222332334432  223689999999999999999865                


Q ss_pred             HHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceecceeEEEEeC---CEEEEeeCCC
Q 017317          301 LLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSLNT  362 (373)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~~~  362 (373)
                                        +.|.++|++ |+.+..+..+.    ..++++.+.+   ++||+++...
T Consensus       220 ------------------~~v~~~d~~tG~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          220 ------------------GRVIRLDPVTGKRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             ------------------TEEEEECTTTCCEEEEEECSS----SBEEEEEEESGGGCEEEEEEBCT
T ss_pred             ------------------CEEEEEcCCCceEEEEEECCC----CCceEEEEeCCCCCEEEEEcCCc
Confidence                              258999987 99998887664    2477787752   5899999754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.93  E-value=3.5e-23  Score=188.22  Aligned_cols=261  Identities=19%  Similarity=0.306  Sum_probs=188.1

Q ss_pred             eeEeccCCcCCcceEEEecCCCEEEE--------ecCCeEEEEE-cCCceEEeee-----ecCccccCeEECCC-CcEEE
Q 017317           68 VTRLGEGILNGPEDVCVDRNGVLYTA--------TRDGWIKRLH-KNGTWENWKL-----IGGDTLLGITTTQE-NEILV  132 (373)
Q Consensus        68 ~~~~~~g~~~~P~~ia~d~~G~l~v~--------~~~g~I~~~~-~~g~~~~~~~-----~~~~p~~gl~~d~~-g~L~v  132 (373)
                      .+.+..+ +..|++++++++|++|++        ..+++|++++ .+|+++.+..     ....|. +++++++ |+||+
T Consensus        10 ~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             Hhhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            3455555 789999999999999987        5778999999 5777765543     346788 9999999 99999


Q ss_pred             EECCCcEEEEecCC-cEEE-eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317          133 CDADKGLLKVTEEG-VTVL-ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (373)
Q Consensus       133 a~~~~gl~~~~~~g-~~~l-~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  210 (373)
                      ++...+|++++.+| .+.+ .....+.+...+++++++++|++|+++.........+  ........++|+++|++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCE
Confidence            98777899999338 6554 3332333445789999999999999986411000000  00111234789999987 666


Q ss_pred             EEeecCCCCcceEEEc----cCCCEEEEEeCCCCeEEEEEecC-CCCcceeEEec--CCC-CCCCceeECCCCCEEEEEe
Q 017317          211 SILLDSLFFANGVALS----KDEDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVE--NLP-GGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       211 ~~~~~~~~~~~gi~~~----~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~--~~~-g~p~~i~~d~dG~lwva~~  282 (373)
                      +.+......|++++++    +|++.+|+++...++|++|+.++ ........+..  ... +.|+++++|++|++|+++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            6665666778999999    99988999998889999999752 22222222321  111 5689999999999999986


Q ss_pred             cCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceecceeEEEEe-CC-EEEEee
Q 017317          283 QLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVTSALEF-DD-HLYLGS  359 (373)
Q Consensus       283 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~vgs  359 (373)
                      ..                                  +.+.+++++ |+.+..+..+.    ..+..+.++ ++ .||+++
T Consensus       245 ~~----------------------------------~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          245 GS----------------------------------SHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             TT----------------------------------TEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEE
T ss_pred             CC----------------------------------CEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEe
Confidence            53                                  248899988 88777665443    346777765 45 499999


Q ss_pred             CCCCeEEEeeCC
Q 017317          360 LNTNFIGKLPLK  371 (373)
Q Consensus       360 ~~~~~i~~~~l~  371 (373)
                      ...+.|.++++.
T Consensus       287 ~~~~~l~~~~~~  298 (314)
T 1pjx_A          287 HENNAVWKFEWQ  298 (314)
T ss_dssp             TTTTEEEEEECS
T ss_pred             CCCCeEEEEeCC
Confidence            988899999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.90  E-value=5.7e-21  Score=173.91  Aligned_cols=225  Identities=17%  Similarity=0.227  Sum_probs=169.0

Q ss_pred             CCcceEEEecCCCEEEEe-cCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECC-Cc--EEEEe-cCC-cEEE
Q 017317           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KG--LLKVT-EEG-VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~g--l~~~~-~~g-~~~l  150 (373)
                      ..|++++++++|+||+.+ .+++|++++++|+...+....+.|. +|+++++|+|||++.. .+  +++++ ++| ++.+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            679999999999999877 7899999998887766656667899 9999999999999854 23  88888 677 6655


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-----------ecCCCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-----------LDSLFF  219 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-----------~~~~~~  219 (373)
                      ....   ....+++++..+++.+|+++..                 .+.||++|+.+++.+..           ...+..
T Consensus       111 ~~~~---~~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          111 LTLP---DAIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EECT---TCSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EeCC---CccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            4432   1345678888888889999853                 47999999876543221           134567


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecC-CCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHH
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKAT  298 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~  298 (373)
                      |+|+  ++|+++|||+++.+++|++|+.++ ...+..+.+...  ..|+++++|++|++|++....              
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~--------------  232 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY--------------  232 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT--------------
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCC--------------
Confidence            8998  889999999999999999999875 333444444422  479999999999999998754              


Q ss_pred             HHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe----C-CEEEEeeCCC
Q 017317          299 KHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF----D-DHLYLGSLNT  362 (373)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~----~-g~L~vgs~~~  362 (373)
                                          +.|.+++++|+.......+.+  ...++++.+.    + ++||+.+..+
T Consensus       233 --------------------~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          233 --------------------NSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             --------------------CCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             --------------------CeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence                                247889999987543222222  3457888774    2 6999998754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.89  E-value=6.8e-21  Score=181.42  Aligned_cols=240  Identities=15%  Similarity=0.149  Sum_probs=179.5

Q ss_pred             CcCCcceEEEecC---CCEEEEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECC-----CcEEEEec-
Q 017317           75 ILNGPEDVCVDRN---GVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDAD-----KGLLKVTE-  144 (373)
Q Consensus        75 ~~~~P~~ia~d~~---G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-----~gl~~~~~-  144 (373)
                      .+..|.+|++|++   |+||+++..++|++++. +|+++.+......|. +|+++++|+|||++..     .+++.++. 
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            5788999999984   99999886689999995 777777766667799 9999999999999863     35777763 


Q ss_pred             CCc---EEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-EEeec--CC
Q 017317          145 EGV---TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLD--SL  217 (373)
Q Consensus       145 ~g~---~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~--~~  217 (373)
                      .+.   ..+.      .+..|+++++++ +|+|||++..                 +++|+++|++++.. +.+..  ..
T Consensus       216 ~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          216 SGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             GTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSCC
T ss_pred             CCeecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCCC
Confidence            332   1221      356789999999 8999999864                 47899999987766 33322  23


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecC--C------------CCCCCceeE---------C
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVEN--L------------PGGPDNIKL---------A  272 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~--~------------~g~p~~i~~---------d  272 (373)
                      ..+.+++++++++.|||++..+++|++++.++.  .......+...  .            ...|.++++         |
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            445689999999999999999999999987642  22222222211  1            124778999         9


Q ss_pred             CCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCC--------CC-----
Q 017317          273 PDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDP--------NG-----  339 (373)
Q Consensus       273 ~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~--------~g-----  339 (373)
                      .+|+|||+....                                  +.|.+++++|++.......        +|     
T Consensus       353 ~~g~lyvaD~~n----------------------------------~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~  398 (433)
T 4hw6_A          353 DEYDFYFCDRDS----------------------------------HTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQ  398 (433)
T ss_dssp             CCEEEEEEETTT----------------------------------TEEEEECTTSEEEEEECCCTTCSSCCBCEETTTT
T ss_pred             CCCcEEEEECCC----------------------------------CEEEEECCCCCEEEEEeCCCCCccccCCCccccc
Confidence            999999998764                                  2578899999766554321        11     


Q ss_pred             ceecceeEEEEe--CCEEEEeeCCCCeEEEeeCCC
Q 017317          340 KVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       340 ~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      ..++.+..+..+  +|+||++...+++|.++.+++
T Consensus       399 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  433 (433)
T 4hw6_A          399 ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPEE  433 (433)
T ss_dssp             CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecCC
Confidence            135678888877  689999999999999998764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.89  E-value=3.4e-20  Score=170.32  Aligned_cols=243  Identities=17%  Similarity=0.206  Sum_probs=176.1

Q ss_pred             ceeEeccCCcCCcceEEEecC-CCEE-EEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe
Q 017317           67 SVTRLGEGILNGPEDVCVDRN-GVLY-TATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT  143 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~-G~l~-v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~  143 (373)
                      +++.+.+....-+|+.+++++ +.+| ++..+++|++++.++ +.+.+. ....+. +++++++|++|++.. .+|++++
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~-~i~~~~dg~l~v~~~-~gl~~~d  115 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGS-ALAKISDSKQLIASD-DGLFLRD  115 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEE-EEEEEETTEEEEEET-TEEEEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcce-EEEEeCCCeEEEEEC-CCEEEEE
Confidence            455666655566899999984 6676 555788999999544 444432 345677 899999999999984 6899999


Q ss_pred             -cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc
Q 017317          144 -EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (373)
Q Consensus       144 -~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~  221 (373)
                       .+| .+.+.....+.....+++++++++|++|+++....           .....++||+++ + ++.+.+......++
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~  182 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPN  182 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEE
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccC
Confidence             667 66554332223345688999999999999874310           012347899999 4 67666655566789


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEec--CC-CCcceeEEec--CCCCCCCceeECCCCCEEEEEecCCCchhhhccCCh
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLK--GE-SKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSK  296 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~--~~-~~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p  296 (373)
                      ++++++|++.+|++++..++|++|+.+  +. .....+.+..  ...+.|+++++|++|++|+++...            
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~------------  250 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE------------  250 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT------------
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC------------
Confidence            999999999999999988999999975  22 2222233322  234679999999999999999753            


Q ss_pred             HHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-C--CEEEEeeCCCC
Q 017317          297 ATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-D--DHLYLGSLNTN  363 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~--g~L~vgs~~~~  363 (373)
                                            +.|.+++++|+.+..+..+.    ..++.+.+. +  ++||+++..+.
T Consensus       251 ----------------------~~v~~~d~~g~~~~~i~~~~----~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          251 ----------------------GAVDRYDTDGNHIARYEVPG----KQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ----------------------TEEEEECTTCCEEEEEECSC----SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ----------------------CEEEEECCCCCEEEEEECCC----CCcEEEEEecCCCCEEEEEecCCC
Confidence                                  24899999999888887554    246777765 2  58999997763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=3.6e-20  Score=166.36  Aligned_cols=237  Identities=14%  Similarity=0.153  Sum_probs=173.8

Q ss_pred             CCcCCcceEEEecCCCEEEEe-cCCeEEEEEcCCceEEeeee-------cCccccCeEE-CCCCcEEEEEC--CCcEEEE
Q 017317           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLI-------GGDTLLGITT-TQENEILVCDA--DKGLLKV  142 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~-------~~~p~~gl~~-d~~g~L~va~~--~~gl~~~  142 (373)
                      +.+..|.+++++++|++|+++ .+++|.+++.+|+.......       ...|. ++++ +++|+|||++.  ...|.++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            557889999999999999875 67899999977764332211       24678 9999 68999999985  4678888


Q ss_pred             ecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCC
Q 017317          143 TEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF  218 (373)
Q Consensus       143 ~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~  218 (373)
                      +.+|  ...+.    ......+++|+++++|++|+++..                 .+.|+++|+++.....+.  ..+.
T Consensus       106 d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~~~  164 (286)
T 1q7f_A          106 NQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLE  164 (286)
T ss_dssp             CTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCS
T ss_pred             CCCCcEEEEec----CccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCccC
Confidence            8656  33331    123356889999999999999854                 468999998755544443  3456


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCCEEEEEecCCCchhhhccCChH
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKA  297 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~  297 (373)
                      .|++++++++|+ +|+++..+++|.+|+.++..   ...+... ....|.++++|++|++|+++....            
T Consensus       165 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~------------  228 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHNN------------  228 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSSS------------
T ss_pred             CcEEEEECCCCC-EEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCCCC------------
Confidence            799999999987 99999888999999975532   2223211 124689999999999999986531            


Q ss_pred             HHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          298 TKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                                           +.|..++++|+.+..+.....  ...+..+..+ +|+||+++. .+.|..+++..
T Consensus       229 ---------------------~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~~~  280 (286)
T 1q7f_A          229 ---------------------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRYVQ  280 (286)
T ss_dssp             ---------------------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEECSC
T ss_pred             ---------------------EEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEccc
Confidence                                 147889999998888764332  2245566665 689999975 78898888653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.88  E-value=4.9e-20  Score=169.08  Aligned_cols=248  Identities=20%  Similarity=0.252  Sum_probs=177.0

Q ss_pred             cCCcceEEEecCCCEEE-EecCCeEEEEEc-CCceEEee-eecCccccCeEECCCCcEEEEECCC-----cEEEEe-cCC
Q 017317           76 LNGPEDVCVDRNGVLYT-ATRDGWIKRLHK-NGTWENWK-LIGGDTLLGITTTQENEILVCDADK-----GLLKVT-EEG  146 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v-~~~~g~I~~~~~-~g~~~~~~-~~~~~p~~gl~~d~~g~L~va~~~~-----gl~~~~-~~g  146 (373)
                      ...|++++++++|+||+ +..+++|++++. +++...+. .....+. +++++++|+||+++...     +|++++ .++
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            56799999999999996 557889999995 45655543 3346688 99999999999997654     799999 555


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEE
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~  225 (373)
                       .+.+....  .....+++++++++|++|+++....           .....++|+++|+++++.+.+......++++++
T Consensus       123 ~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          123 NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             EEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence             54332211  1234688999999999999975310           012347899999987777666555667899999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecC--CCCcce--eEEec-CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHH
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKG--ESKEQT--EIFVE-NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKH  300 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~--~~~~~~--~~~~~-~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~  300 (373)
                      ++||+.+|+++...++|++|+.+.  ......  ..+.. .....|+++++|++|++|+++...                
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~----------------  253 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ----------------  253 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT----------------
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC----------------
Confidence            999999999998888999999853  221111  11111 111378999999999999998653                


Q ss_pred             HHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCc--eecceeEEEEe-C-CEEEEeeCCCC-----eEEEeeCC
Q 017317          301 LLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGK--VMSFVTSALEF-D-DHLYLGSLNTN-----FIGKLPLK  371 (373)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~--~~~~~~~~~~~-~-g~L~vgs~~~~-----~i~~~~l~  371 (373)
                                        +.|.+++++|+.+..+..+...  .+..+..+... + ++||+++..++     .|.++++.
T Consensus       254 ------------------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          254 ------------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             ------------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             ------------------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence                              2478899999988888655320  12245666664 3 58999998743     67877764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.88  E-value=2.1e-20  Score=166.15  Aligned_cols=232  Identities=18%  Similarity=0.240  Sum_probs=168.0

Q ss_pred             CcceEEEecCCCEEE-Ee-cCCeEEEEEcCCc-eEEeee-ecCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEe
Q 017317           78 GPEDVCVDRNGVLYT-AT-RDGWIKRLHKNGT-WENWKL-IGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v-~~-~~g~I~~~~~~g~-~~~~~~-~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~  151 (373)
                      .|.+++++++|+||+ +. .+++|.+++.++. ...+.. ....|. +|+++++|+|||++..++|++++.++  ...+.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeeee
Confidence            899999999999999 84 6789999985443 222222 235688 99999999999998756788998544  33321


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~  230 (373)
                          ......+.+|+++++|++|+++..                 .+.|++++..+...... ......|++++++++|+
T Consensus       104 ----~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          104 ----FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             ----CCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred             ----cCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC
Confidence                122356889999999999999753                 46899998765543332 23456799999999998


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK  310 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  310 (373)
                       +|+++..+++|.+|+.++....   .........|.++++|++|++|+++...                          
T Consensus       163 -l~v~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~d~~g~l~v~~~~~--------------------------  212 (270)
T 1rwi_B          163 -VYVTDTDNNRVVKLEAESNNQV---VLPFTDITAPWGIAVDEAGTVYVTEHNT--------------------------  212 (270)
T ss_dssp             -EEEEEGGGTEEEEECTTTCCEE---ECCCSSCCSEEEEEECTTCCEEEEETTT--------------------------
T ss_pred             -EEEEECCCCEEEEEecCCCceE---eecccCCCCceEEEECCCCCEEEEECCC--------------------------
Confidence             9999988889999987653211   1111112568999999999999998653                          


Q ss_pred             hccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          311 LVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       311 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                              +.+.+++++++....... .+  +..+..+..+ +|+||+++..++.|.++++.+
T Consensus       213 --------~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          213 --------NQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             --------SCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             --------CcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence                    137889988876544321 22  3457777776 579999999999999999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.87  E-value=6.2e-19  Score=158.56  Aligned_cols=232  Identities=13%  Similarity=0.203  Sum_probs=172.8

Q ss_pred             cCCcceEEEecCCCEEEEe-cCCeEEEEEcCCceEEeeee--cCccccCeEECCCCcEEEEECC-CcEEEEecCC-cEEE
Q 017317           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLI--GGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~--~~~p~~gl~~d~~g~L~va~~~-~gl~~~~~~g-~~~l  150 (373)
                      ...|++|++|++|++|+++ .+++|.+++.++++..+...  ...|. +++++++|++|+++.. ++|++++.+| .+.+
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~   97 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFTEY   97 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence            5789999999999999988 57899999976776654322  35688 9999999999999864 5688898447 5433


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCCcceEEEccC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~d  228 (373)
                      ....   ....+.+++++++|++|+++..                 .+.|+++|++ ++...+.  .....|++++++++
T Consensus        98 ~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           98 PLPQ---PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             ECSS---TTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCCC---CCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            2211   1256889999999999999753                 3689999998 6555432  24567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      |+ +|+++...++|++|+.++    ....+. ......|.++++|++|++|+++...                       
T Consensus       157 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-----------------------  208 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-----------------------  208 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT-----------------------
T ss_pred             CC-EEEEecCCCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEccCC-----------------------
Confidence            98 999998888999998633    222222 1223468899999999999998654                       


Q ss_pred             hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                 +.+.+++++|+.... ..+.+  ...+..+..+ +|+||+++...+.|.++++.
T Consensus       209 -----------~~i~~~~~~g~~~~~-~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          209 -----------NKIGRITTTGEISEY-DIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             -----------TEEEEECTTCCEEEE-ECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             -----------CEEEEEcCCCcEEEE-ECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence                       247889988776553 23322  2456777765 58999999988999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=3.8e-19  Score=159.95  Aligned_cols=230  Identities=13%  Similarity=0.176  Sum_probs=169.8

Q ss_pred             cCCcceEEEecCCCEEEEec-CCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEEC-CCcEEEEecCC-cEEE
Q 017317           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDA-DKGLLKVTEEG-VTVL  150 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~~~g-~~~l  150 (373)
                      ...|.++++|++|++|+++. +++|++++.+|+...+..  ....|. +++++++|++|+++. ..++++++.+| ...+
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~  139 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY-GITEGLNGDIWFTQLNGDRIGKLTADGTIYEY  139 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCc-cceECCCCCEEEEccCCCeEEEECCCCCEEEc
Confidence            46799999999999998875 688999997787765543  235688 999999999999986 35788898547 5433


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCCcceEEEccC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~d  228 (373)
                      ..  . .....+++++++++|++|+++..                 .+.|+++|++ ++...+.  .....|.+++++++
T Consensus       140 ~~--~-~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          140 DL--P-NKGSYPAFITLGSDNALWFTENQ-----------------NNSIGRITNT-GKLEEYPLPTNAAAPVGITSGND  198 (300)
T ss_dssp             EC--S-STTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT
T ss_pred             cC--C-CCCCCceeEEECCCCCEEEEecC-----------------CCeEEEECCC-CcEEEeeCCCCCCCcceEEECCC
Confidence            21  1 12356889999999999999853                 3689999984 5555432  33567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      |+ +|+++...++|.+|+.++    ....+. ......|.++++|++|++|+++...                       
T Consensus       199 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-----------------------  250 (300)
T 2qc5_A          199 GA-LWFVEIMGNKIGRITTTG----EISEYDIPTPNARPHAITAGKNSEIWFTEWGA-----------------------  250 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETTT-----------------------
T ss_pred             CC-EEEEccCCCEEEEEcCCC----cEEEEECCCCCCCceEEEECCCCCEEEeccCC-----------------------
Confidence            97 999998888999998633    222221 1223468899999999999998653                       


Q ss_pred             hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                 +.+.+++++|+.. .+..+.+.  ..+.++..+ +|+||+++. + .|.++++.
T Consensus       251 -----------~~i~~~~~~g~~~-~~~~~~~~--~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          251 -----------NQIGRITNDNTIQ-EYQLQTEN--AEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             -----------TEEEEECTTSCEE-EEECCSTT--CCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             -----------CeEEEECCCCcEE-EEECCccC--CccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence                       2488999987654 44444322  346667665 689999998 6 89999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=1e-18  Score=157.14  Aligned_cols=232  Identities=14%  Similarity=0.237  Sum_probs=171.7

Q ss_pred             cCCcceEEEecCCCEEEEec-CCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEECC-CcEEEEecCC-cEEE
Q 017317           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~~~g-~~~l  150 (373)
                      ...|.++++|++|++|+++. +++|.+++.++++..+..  ....|. +++++++|++|+++.. .++++++.++ .+.+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIKEY   92 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence            57899999999999999885 689999997677665542  245688 9999999999999864 5688998556 5444


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCCcceEEEccC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKD  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~d  228 (373)
                      ...   .....+.+|+++++|++|+++..                 .++|+++|+ +++...+.  .....|++++++++
T Consensus        93 ~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           93 TLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             eCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            321   12346889999999999999753                 368999998 45555432  23567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEE-ecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIF-VENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      |+ +|+++...++|++++.++    ....+ .......|.++++|++|++|+++...                       
T Consensus       152 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----------------------  203 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEIIG-----------------------  203 (299)
T ss_dssp             SC-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT-----------------------
T ss_pred             CC-EEEEeCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccCC-----------------------
Confidence            97 999998888999998632    22222 21223468899999999999998643                       


Q ss_pred             hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                 +.+.+++++|+... +..+..  ...+..+..+ +|+||+++...+.|.++++.
T Consensus       204 -----------~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          204 -----------NKIGRITTSGEITE-FKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             -----------TEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             -----------ceEEEECCCCcEEE-EECCCC--CCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence                       24788998777543 433322  2456777775 58999999888999999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=1.2e-19  Score=172.78  Aligned_cols=240  Identities=13%  Similarity=0.133  Sum_probs=177.3

Q ss_pred             CcCCcceEEEec--CCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECCCCc-EEEEECCC-----cEEEEecC
Q 017317           75 ILNGPEDVCVDR--NGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDADK-----GLLKVTEE  145 (373)
Q Consensus        75 ~~~~P~~ia~d~--~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~-----gl~~~~~~  145 (373)
                      .+..|..|++|+  +|+||+.+..++|.+++.++ +++.+......|. +|+++++|+ |||++...     .++.++.+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            478999999995  69999888668999999655 5666655567799 999999998 99998632     35556644


Q ss_pred             C-cE---EEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCC
Q 017317          146 G-VT---VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLF  218 (373)
Q Consensus       146 g-~~---~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~  218 (373)
                      | ..   .+.      .+..|+++++++ +|+|||++..                 .++|++++++++....+.  ....
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCC
Confidence            4 32   222      245789999999 8999999864                 479999999877663332  2345


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEecCCC--CcceeEEecC--------------CCCCCC-ceeE--------CC
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGES--KEQTEIFVEN--------------LPGGPD-NIKL--------AP  273 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~--------------~~g~p~-~i~~--------d~  273 (373)
                      .|++++++++|++|||++..+++|++++.++..  ......+...              ....|. ++++        |+
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            799999999999999999999999999877531  1111222211              012466 7777        57


Q ss_pred             CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCC--------CC-----c
Q 017317          274 DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDP--------NG-----K  340 (373)
Q Consensus       274 dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~--------~g-----~  340 (373)
                      +|+||++....                                  ..|.+++++|++.......        +|     .
T Consensus       351 ~g~lyvaD~~n----------------------------------~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~  396 (430)
T 3tc9_A          351 EYDFYFCDREN----------------------------------HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEA  396 (430)
T ss_dssp             CEEEEEEEGGG----------------------------------TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTC
T ss_pred             CCeEEEEECCC----------------------------------cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhc
Confidence            79999998864                                  2578899999776655431        22     1


Q ss_pred             eecceeEEEEe--CCEEEEeeCCCCeEEEeeCCC
Q 017317          341 VMSFVTSALEF--DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       341 ~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      .++.+..+..+  +++||++...+++|.++.+++
T Consensus       397 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  430 (430)
T 3tc9_A          397 RFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE  430 (430)
T ss_dssp             BCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCCeEEEEccCC
Confidence            35678888877  489999999999999998763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=6.1e-19  Score=158.56  Aligned_cols=232  Identities=13%  Similarity=0.195  Sum_probs=169.8

Q ss_pred             cCCcceEEEecCCCEEEEec-CCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEECC-CcEEEEecCC-cEEE
Q 017317           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG-VTVL  150 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~~~g-~~~l  150 (373)
                      ...|.++++|++|++|+++. +++|++++.+|+.+.+..  ....|. +++++++|+||+++.. .++++++.++ ...+
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~  134 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIREY  134 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence            46799999999999998875 788999997777765542  245688 9999999999999754 5688888666 4443


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe--ecCCCCcceEEEccC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSLFFANGVALSKD  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~~gi~~~~d  228 (373)
                      ...   .....+++++++++|++|+++..                 .+.|+++|+ +++...+  ......|.+++++++
T Consensus       135 ~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          135 ELP---NKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC---CCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            221   12346889999999999999753                 368999999 5666543  234567889999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      |+ +|+++...++|.+|+.++ .   ...+. ......|.++++|++|++|+++...                       
T Consensus       194 g~-l~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----------------------  245 (299)
T 2z2n_A          194 DA-LWFVEIIGNKIGRITTSG-E---ITEFKIPTPNARPHAITAGAGIDLWFTEWGA-----------------------  245 (299)
T ss_dssp             SS-EEEEETTTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECSTTCEEEEETTT-----------------------
T ss_pred             CC-EEEEccCCceEEEECCCC-c---EEEEECCCCCCCceeEEECCCCCEEEeccCC-----------------------
Confidence            88 999998888999998632 2   22232 1123468899999999999998543                       


Q ss_pred             hhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          308 LIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                                 +.+.+++++|+ +..+..+.+.  ..+..+...+|+||+++. .+.|.++++..
T Consensus       246 -----------~~i~~~d~~g~-~~~~~~~~~~--~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          246 -----------NKIGRLTSNNI-IEEYPIQIKS--AEPHGICFDGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             -----------TEEEEEETTTE-EEEEECSSSS--CCEEEEEECSSCEEEEET-TTEEEEEEEC-
T ss_pred             -----------ceEEEECCCCc-eEEEeCCCCC--CccceEEecCCCEEEEec-CCcEEEEEcCc
Confidence                       24788998775 4455433322  345666556689999986 67899998763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.86  E-value=1.2e-18  Score=164.98  Aligned_cols=238  Identities=10%  Similarity=0.096  Sum_probs=169.9

Q ss_pred             CcCCcceEEEecCCCEEEEe-cCCeEEEEEcC-CceEEeeeecCccccCeEECCCCc-EEEEECCC--cEEEEe-cCC-c
Q 017317           75 ILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENE-ILVCDADK--GLLKVT-EEG-V  147 (373)
Q Consensus        75 ~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~--gl~~~~-~~g-~  147 (373)
                      .+..|.+|++|++|+||+.+ .+++|.+++.+ ++...+......+.  ++++++|+ ||+++...  .+++++ ..+ .
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            47889999999999999776 56899999965 56665544333333  88998885 78887643  688888 444 3


Q ss_pred             -EEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe----ecCC--CC
Q 017317          148 -TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL----LDSL--FF  219 (373)
Q Consensus       148 -~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~----~~~~--~~  219 (373)
                       ..+.. ........++++++++ +|.||+++.                  .+.|+++|++++....+    ..+.  ..
T Consensus       207 ~~~~g~-~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          207 PTRIGQ-LGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEEE-CCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eEEeee-ccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence             23311 1111345789999999 789999764                  37899999987776554    2221  22


Q ss_pred             cc-eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC--------------CCCCCceeECCCCCEEEEEe-c
Q 017317          220 AN-GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL--------------PGGPDNIKLAPDGSFWIAIL-Q  283 (373)
Q Consensus       220 ~~-gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~g~p~~i~~d~dG~lwva~~-~  283 (373)
                      |. ++++++++..||+++..+++|++|+.++.    ...+....              ...|.++++|++|+||++.. .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            44 99999976779999999999999987653    22222111              23599999999999999987 5


Q ss_pred             CCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCC------CC----ceecceeEEEEe-
Q 017317          284 LSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDP------NG----KVMSFVTSALEF-  351 (373)
Q Consensus       284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~------~g----~~~~~~~~~~~~-  351 (373)
                      .                                  ..|.+++ ++|++......+      +|    ..+..+..+..+ 
T Consensus       344 ~----------------------------------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          344 G----------------------------------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             T----------------------------------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             C----------------------------------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence            4                                  2578888 777765444321      11    125678888876 


Q ss_pred             CCEEEEeeCCCCeEEEeeCC
Q 017317          352 DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       352 ~g~L~vgs~~~~~i~~~~l~  371 (373)
                      +|+||++...+++|.++.++
T Consensus       390 ~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SSEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEeC
Confidence            48999999999999999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=1.1e-18  Score=160.40  Aligned_cols=242  Identities=15%  Similarity=0.160  Sum_probs=165.4

Q ss_pred             CcCCcceEEEecCCCEEEEecCC-------------------------eEEEEEc-CCceEEeee--ecCccccCeEECC
Q 017317           75 ILNGPEDVCVDRNGVLYTATRDG-------------------------WIKRLHK-NGTWENWKL--IGGDTLLGITTTQ  126 (373)
Q Consensus        75 ~~~~P~~ia~d~~G~l~v~~~~g-------------------------~I~~~~~-~g~~~~~~~--~~~~p~~gl~~d~  126 (373)
                      .+..|.+|++|++|++|++...+                         .|++++. +|+......  ....|. ++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEECT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEECC
Confidence            46789999999999999877544                         6999995 477644322  134789 999999


Q ss_pred             CCcEEEEECC-CcEEEEecCC-c---EEEeec-cC---CccccccceeEEcC-CCcEEEEeCCccccccccccccccccC
Q 017317          127 ENEILVCDAD-KGLLKVTEEG-V---TVLASH-VN---GSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       127 ~g~L~va~~~-~gl~~~~~~g-~---~~l~~~-~~---~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      +|+|||++.. +.|.+++.+| .   ..+... ..   ...+..|++|++++ +|+|||+++.                .
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------~  164 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------C  164 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------S
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------C
Confidence            9999999875 4577888555 3   222110 01   23455799999999 8999999852                2


Q ss_pred             CceEEEEeCCCCeEEEee----------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec-CCCCcceeEEec-CCCC
Q 017317          197 HGKLLKYDPSLNETSILL----------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK-GESKEQTEIFVE-NLPG  264 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~----------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~g  264 (373)
                      +++|+++|+++.....+.          ..+..|.++++++++..+||++..+++|.+|+.+ |..   ...+.. ....
T Consensus       165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~---~~~~~~~~~~~  241 (329)
T 3fvz_A          165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF---VREIKHASFGR  241 (329)
T ss_dssp             CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECCTTTTT
T ss_pred             CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE---EEEEeccccCC
Confidence            478999997754444432          1245699999999966799999999999999976 321   112211 1112


Q ss_pred             CCCceeECC------CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCC
Q 017317          265 GPDNIKLAP------DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDP  337 (373)
Q Consensus       265 ~p~~i~~d~------dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~  337 (373)
                      .+.++++.+      +|++|++....                                  ..+..++ .+|+.+..+...
T Consensus       242 ~~~~~~~~pg~~~~~~g~~~v~~~~~----------------------------------~~v~~~~~~~g~~~~~~~~~  287 (329)
T 3fvz_A          242 NVFAISYIPGFLFAVNGKPYFGDQEP----------------------------------VQGFVMNFSSGEIIDVFKPV  287 (329)
T ss_dssp             CEEEEEEETTEEEEEECCCCTTCSCC----------------------------------CCEEEEETTTCCEEEEECCS
T ss_pred             CcceeeecCCEEEEeCCCEEeccCCC----------------------------------cEEEEEEcCCCeEEEEEcCC
Confidence            334444444      55555443322                                  2356677 678888887532


Q ss_pred             CCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          338 NGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       338 ~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                      .+ .+..+..+..+ +|+||++....+.|.++++.
T Consensus       288 ~~-~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          288 RK-HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             SS-CCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             CC-ccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            22 35678888876 57999999999999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.83  E-value=1.8e-18  Score=159.84  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=165.7

Q ss_pred             eeEeccCCcCCcceEEEecCCCEEEEec---CC--eEEEEEcCCceEEeee-------ecCccccCeEECCCCcEEEEEC
Q 017317           68 VTRLGEGILNGPEDVCVDRNGVLYTATR---DG--WIKRLHKNGTWENWKL-------IGGDTLLGITTTQENEILVCDA  135 (373)
Q Consensus        68 ~~~~~~g~~~~P~~ia~d~~G~l~v~~~---~g--~I~~~~~~g~~~~~~~-------~~~~p~~gl~~d~~g~L~va~~  135 (373)
                      ++.+.+.. ..|++|+++++|++|++..   ++  +|..++ +|+...+..       ....|. ++++|++|+|||++.
T Consensus         9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A            9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLDN   85 (343)
T ss_dssp             CEEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEEC
T ss_pred             eEEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEcC
Confidence            34444432 5899999999999998752   34  788888 776554421       124688 999999999999986


Q ss_pred             C------CcEEEEe-cCC-c-EEEee-ccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEe
Q 017317          136 D------KGLLKVT-EEG-V-TVLAS-HVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (373)
Q Consensus       136 ~------~gl~~~~-~~g-~-~~l~~-~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d  204 (373)
                      .      ..|+++| .+| . +.+.. .....+...+++++++++ |.+|+++.+.              ...++|+++|
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--------------~~~~~i~v~d  151 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--------------DDKAALIRVD  151 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--------------GGGCEEEEEE
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--------------CCCCeEEEEE
Confidence            4      5799999 667 3 33321 111223356899999974 7999998631              0135677777


Q ss_pred             CCCCeEEEeecC------------------------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEec---CCC
Q 017317          205 PSLNETSILLDS------------------------------LFFANGVALSKDEDYLVVCETFKFRCLKYWLK---GES  251 (373)
Q Consensus       205 ~~~~~~~~~~~~------------------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~---~~~  251 (373)
                      .++++......+                              ...++|+++++||+.||+++...+++++++..   ...
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~  231 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ  231 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC
Confidence            765554433211                              12479999999999999999988899999853   111


Q ss_pred             Ccc------eeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC
Q 017317          252 KEQ------TEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA  325 (373)
Q Consensus       252 ~~~------~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  325 (373)
                      ...      +....  ..+.|+++++|++|++|++....                                  +.|.+++
T Consensus       232 ~~~~~~~~~~~~~g--~~g~pdgia~d~~G~l~va~~~~----------------------------------~~V~~~d  275 (343)
T 2qe8_A          232 LTDAELGSKIERYS--EKPICDGISIDKDHNIYVGDLAH----------------------------------SAIGVIT  275 (343)
T ss_dssp             CCHHHHHTTCEEEE--ECCSCSCEEECTTCCEEEEEGGG----------------------------------TEEEEEE
T ss_pred             CChhhhhcceEecc--cCCCCceEEECCCCCEEEEccCC----------------------------------CeEEEEE
Confidence            111      11111  13479999999999999998764                                  2588999


Q ss_pred             C-CCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeE
Q 017317          326 A-NGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFI  365 (373)
Q Consensus       326 ~-~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i  365 (373)
                      + +|+......++.   ...++++..+ +++||+.+...+++
T Consensus       276 ~~~G~~~~~~~~~~---~~~p~~va~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          276 SADRAYKLLVTDEK---LSWTDSFNFGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             TTTTEEEEEEECGG---GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred             CCCCCEEEEEECCc---eecCCeeEECCCCcEEEEeCccccc
Confidence            8 887655555432   4568888875 58999998754433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.82  E-value=8.3e-18  Score=155.93  Aligned_cols=262  Identities=16%  Similarity=0.162  Sum_probs=171.3

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeee------ecCccccCeEECCC----CcEEEEECC
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL------IGGDTLLGITTTQE----NEILVCDAD  136 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~------~~~~p~~gl~~d~~----g~L~va~~~  136 (373)
                      +++.++++ +..|++|+++++|+||++...|+|++++.+|+ +.+..      ....++ ||+++++    |.|||+...
T Consensus        20 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEec
Confidence            56677776 89999999999999999998899999987777 44432      235688 9999986    899998753


Q ss_pred             --------CcEEEEe-cCC------cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEE
Q 017317          137 --------KGLLKVT-EEG------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL  201 (373)
Q Consensus       137 --------~gl~~~~-~~g------~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~  201 (373)
                              ..|.+++ ..+      .+.+....+....+.+++|++++||.|||++...  +.....++  .....|+|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~--~~~~~~~d--~~~~~G~I~  172 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDA--ADPRLAQD--LSSLAGKIL  172 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCT--TCGGGGTC--TTCCSSEEE
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCC--CCCccccC--CCCCCeEEE
Confidence                    5688887 322      2233333333345678899999999999997542  11111111  123458999


Q ss_pred             EEeCCCC--------eEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe--cCCCCcce------------eE-E
Q 017317          202 KYDPSLN--------ETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL--KGESKEQT------------EI-F  258 (373)
Q Consensus       202 ~~d~~~~--------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~--~~~~~~~~------------~~-~  258 (373)
                      |+++++.        ..+.+..++.+|+|++++++...||+++...++...++.  .+...+..            .. +
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  252 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI  252 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence            9999854        346778889999999999943349999988765333321  22222110            00 1


Q ss_pred             ec-CCCCCCCceeE-------CCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC--CCC
Q 017317          259 VE-NLPGGPDNIKL-------APDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA--ANG  328 (373)
Q Consensus       259 ~~-~~~g~p~~i~~-------d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~--~~g  328 (373)
                      .- .....|.++++       +.+|++|++...+.                                  .|.+++  .+|
T Consensus       253 ~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~----------------------------------~v~~~~~~~~g  298 (354)
T 3a9g_A          253 DTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGS----------------------------------MLAAVNFGDNM  298 (354)
T ss_dssp             ECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTT----------------------------------EEEEEEECGGG
T ss_pred             ecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCC----------------------------------EEEEEEECCCC
Confidence            00 12235888888       57899999987542                                  244444  345


Q ss_pred             cEE--EEEeCCCCceecceeEEEEe-CCEEEEeeCCCC----------eEEEeeCCC
Q 017317          329 IVI--RKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTN----------FIGKLPLKA  372 (373)
Q Consensus       329 ~~~--~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~----------~i~~~~l~~  372 (373)
                      +..  ..+-.  +. ...+..+... +|.||+.+...+          .|.|+...+
T Consensus       299 ~~~~~~~~~~--~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~~g  352 (354)
T 3a9g_A          299 EVRKISTFFK--NV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVSEQ  352 (354)
T ss_dssp             CEEEEEEECT--TT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEETT
T ss_pred             cccceeeecc--CC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEecCC
Confidence            443  22321  11 2346777766 689999997422          799987653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.80  E-value=9.7e-18  Score=155.47  Aligned_cols=209  Identities=15%  Similarity=0.157  Sum_probs=140.7

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeee------ecCccccCeEECCC----CcEEEEECC
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKL------IGGDTLLGITTTQE----NEILVCDAD  136 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~------~~~~p~~gl~~d~~----g~L~va~~~  136 (373)
                      +++.++++ +..|++|+++++|+||+++..|+|++++ +|+.+.+..      ....|+ ||+++++    +.|||++..
T Consensus        22 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           22 RVEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             CEEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEec
Confidence            56677776 8899999999999999999889999998 776554432      235789 9999987    789999753


Q ss_pred             ------CcEEEEe-cCC-c---EEEeeccC--CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE
Q 017317          137 ------KGLLKVT-EEG-V---TVLASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (373)
Q Consensus       137 ------~gl~~~~-~~g-~---~~l~~~~~--~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~  203 (373)
                            ..|.+++ ..+ +   +.+....+  ....+.+++|++++||.|||++...  +.....++  .....|+|+|+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~--~~~~~~~d--~~~~~g~I~ri  174 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEV--YERELAQD--LASLGGKILRL  174 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCT--TCGGGGGC--TTCSSSEEEEE
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCC--CCCccccC--CCCCceEEEEE
Confidence                  5688888 433 2   23333333  2345678899999999999997542  11111111  12345899999


Q ss_pred             eCCC-------------CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe--------EEEEEecCCCCcce-------
Q 017317          204 DPSL-------------NETSILLDSLFFANGVALSKDEDYLVVCETFKFR--------CLKYWLKGESKEQT-------  255 (373)
Q Consensus       204 d~~~-------------~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--------i~~~~~~~~~~~~~-------  255 (373)
                      ++++             ...+.+..++.+|.|++++++...||+++.+.++        |.++. .+...+..       
T Consensus       175 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~-~G~nyGwp~~~g~~~  253 (352)
T 2ism_A          175 TPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV-PGGNYGWPRVVGRGN  253 (352)
T ss_dssp             CTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC-TTCBCCTTTCCSCCC
T ss_pred             cCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec-cCCcCCCCcccCCCC
Confidence            9985             2445667788999999999944449999988776        44432 23222110       


Q ss_pred             ------eEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          256 ------EIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       256 ------~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                            ..+.-.....|.++++ .+|++|++...+
T Consensus       254 ~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~  287 (352)
T 2ism_A          254 DPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG  287 (352)
T ss_dssp             CTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT
T ss_pred             CCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC
Confidence                  0000011235788888 689999998754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.78  E-value=3.6e-17  Score=167.69  Aligned_cols=228  Identities=12%  Similarity=0.172  Sum_probs=166.8

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEc-CCceEEeeee---------cCccccCeEECCCCc-EEEEECCCcEEEEe-cCC
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI---------GGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG  146 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~~~~~~~---------~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g  146 (373)
                      ..+++.|++|+||+|+.+++|.++++ .++++.+...         ..... +++.|++|+ ||+++...||++++ .++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            45788999999999999989999994 4566655321         12345 788899999 99999878999999 566


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-----C--C
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----L--F  218 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-----~--~  218 (373)
                       .+.+...........+.+++.|++|+||+++.                   ++|+++|+++++++.+...     +  .
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCCc
Confidence             66554322223335678899999999999974                   4799999998887765422     1  2


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec--CCCC----CCCceeECCCCCEEEEEecCCCchhhhc
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPG----GPDNIKLAPDGSFWIAILQLSSPGLEFV  292 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g----~p~~i~~d~dG~lwva~~~~~~~~~~~~  292 (373)
                      ....+..+++|+ +|++..  ++|++|+.++...    .+..  ...+    ....++.|++|+||+++..+        
T Consensus       499 ~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~G--------  563 (795)
T 4a2l_A          499 QITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTREG--------  563 (795)
T ss_dssp             CEEEEEECTTCC-EEEEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSC--------
T ss_pred             eEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCC--------
Confidence            234677888887 998875  5799998765432    2211  1112    23457889999999999865        


Q ss_pred             cCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          293 HTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                                  +.+++++.+.+..+...+|...+.+.++.++ +|+||+++.  +.|.++++.
T Consensus       564 ----------------------------l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~~  613 (795)
T 4a2l_A          564 ----------------------------FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNPE  613 (795)
T ss_dssp             ----------------------------EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEETT
T ss_pred             ----------------------------ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcCC
Confidence                                        7899988888888877777666677778776 689999995  559988865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=2.4e-16  Score=150.40  Aligned_cols=243  Identities=14%  Similarity=0.149  Sum_probs=172.7

Q ss_pred             cCCcCCcceEEEec--CCCEEEEec-CCeEEEEEc-CCceEEeeeec----CccccCeEE-------CCCCc-EEEEECC
Q 017317           73 EGILNGPEDVCVDR--NGVLYTATR-DGWIKRLHK-NGTWENWKLIG----GDTLLGITT-------TQENE-ILVCDAD  136 (373)
Q Consensus        73 ~g~~~~P~~ia~d~--~G~l~v~~~-~g~I~~~~~-~g~~~~~~~~~----~~p~~gl~~-------d~~g~-L~va~~~  136 (373)
                      ++.+..|..|++||  +++||+... +++|.++|. ++.++.+....    .+|. +|++       +++|+ |||++..
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCC
Confidence            34467899999997  589998774 477999994 45666654332    3588 9999       99997 9999875


Q ss_pred             C-------cEEEEe--cCC-c------EEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCce
Q 017317          137 K-------GLLKVT--EEG-V------TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (373)
Q Consensus       137 ~-------gl~~~~--~~g-~------~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~  199 (373)
                      .       .++.++  .+| +      ..+.      ....++++++++ +|.||+++..                 .+.
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~  270 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQ  270 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTE
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCE
Confidence            4       266775  334 3      2332      235788999999 6799999864                 578


Q ss_pred             EEEEeCC-------CCeE------------EEe--ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCC--ccee
Q 017317          200 LLKYDPS-------LNET------------SIL--LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK--EQTE  256 (373)
Q Consensus       200 l~~~d~~-------~~~~------------~~~--~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~--~~~~  256 (373)
                      |+++|++       ++..            +.+  ......|.+++++++|+.||++++.+++|++++.++...  ....
T Consensus       271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~  350 (496)
T 3kya_A          271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPY  350 (496)
T ss_dssp             EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred             EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccE
Confidence            9999987       5543            122  123356889999999999999999999999988765321  1112


Q ss_pred             EEecC--C------------CCCCC-ceeEC-------CCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC
Q 017317          257 IFVEN--L------------PGGPD-NIKLA-------PDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP  314 (373)
Q Consensus       257 ~~~~~--~------------~g~p~-~i~~d-------~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  314 (373)
                      .+...  .            ...|. +++.|       .+|+|||+....                              
T Consensus       351 ~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N------------------------------  400 (496)
T 3kya_A          351 NFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN------------------------------  400 (496)
T ss_dssp             EEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG------------------------------
T ss_pred             EecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC------------------------------
Confidence            22211  1            12477 77887       789999999764                              


Q ss_pred             CCccEEEEEECCCCcEEEEEeC--------------CCC-----ceecceeEEEEeC--CEEEEeeCCCCeEEEeeCCCC
Q 017317          315 LHKKAAVVNVAANGIVIRKFED--------------PNG-----KVMSFVTSALEFD--DHLYLGSLNTNFIGKLPLKAT  373 (373)
Q Consensus       315 ~~~~g~v~~~~~~g~~~~~~~~--------------~~g-----~~~~~~~~~~~~~--g~L~vgs~~~~~i~~~~l~~~  373 (373)
                          ..|.+++++|.+......              .+|     ..++.+..+..+.  |.|||+...+++|.++.+.++
T Consensus       401 ----~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          401 ----FCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             ----TEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             ----CEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                257889999976554432              122     1367788888763  899999999999999998753

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=3.1e-16  Score=143.92  Aligned_cols=212  Identities=14%  Similarity=0.107  Sum_probs=148.7

Q ss_pred             cCCcceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecC------ccccCeEECCCCcEEEEEC--CCcEEEEe-c
Q 017317           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGG------DTLLGITTTQENEILVCDA--DKGLLKVT-E  144 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~------~p~~gl~~d~~g~L~va~~--~~gl~~~~-~  144 (373)
                      ...|+.++++++|++|+++ .++.|.++| .+++.........      .|. +|++ .+++|||++.  ...|..+| .
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence            4789999998889999988 789999999 4555543333344      788 9999 5789999985  45688888 5


Q ss_pred             CC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--CCCCc
Q 017317          145 EG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFA  220 (373)
Q Consensus       145 ~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~~~  220 (373)
                      ++ . ..+..   +   ..|++++++++|++|+++... +..     .. .....+.|+++|++++++.....  ....|
T Consensus       161 t~~~~~~i~~---g---~~p~~i~~~~dG~l~v~~~~~-~~~-----~~-~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          161 TDKVVDELTI---G---IQPTSLVMDKYNKMWTITDGG-YEG-----SP-YGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             TTEEEEEEEC---S---SCBCCCEECTTSEEEEEBCCB-CTT-----CS-SCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCeEEEEEEc---C---CCccceEEcCCCCEEEEECCC-ccC-----Cc-cccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence            66 3 22211   1   357899999999999997541 000     00 00113689999999887654332  23479


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHH
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATK  299 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~  299 (373)
                      +++++++|++.+|+++.   .|++++..+.+.... .+.......|+++++|+ +|++|++....               
T Consensus       228 ~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~~~~---------------  288 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVADAID---------------  288 (328)
T ss_dssp             EEEEECTTSCEEEEESS---SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEECTT---------------
T ss_pred             eeEEEecCCCEEEEEcc---EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEcccc---------------
Confidence            99999999999999975   799999765443211 12211135799999997 78999998321               


Q ss_pred             HHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeC
Q 017317          300 HLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFED  336 (373)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~  336 (373)
                                     -...+.|.+|+++|+.+..+..
T Consensus       289 ---------------y~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          289 ---------------YQQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             ---------------SSSEEEEEEECTTCCEEEEEEE
T ss_pred             ---------------cccCCEEEEECCCCCEEEEEEe
Confidence                           1113568999999999988854

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.76  E-value=2.9e-16  Score=145.34  Aligned_cols=190  Identities=14%  Similarity=0.140  Sum_probs=141.1

Q ss_pred             eEeccCCcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-eEEee-eecCccccCeEECC-CCcEEEEECCC-cEEEE
Q 017317           69 TRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADK-GLLKV  142 (373)
Q Consensus        69 ~~~~~g~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~  142 (373)
                      +.+..+ +..|.++++|+ ++.||+.+ .+++|++++.+|. .+.+. .....|. ||++|. .|+||+++... .|.++
T Consensus        66 ~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~  143 (349)
T 3v64_C           66 TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVA  143 (349)
T ss_dssp             EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEE
Confidence            334444 67899999995 88999665 6789999997764 33332 2346788 999995 67899998754 57777


Q ss_pred             ecCC--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCC
Q 017317          143 TEEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLF  218 (373)
Q Consensus       143 ~~~g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~  218 (373)
                      +.+|  .+.+..    ..+..|++|++|| +|.||+++..                ..++|++++.++...+.+. .++.
T Consensus       144 ~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~  203 (349)
T 3v64_C          144 NLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLF  203 (349)
T ss_dssp             ETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCS
T ss_pred             cCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCC
Confidence            7556  444432    2345789999997 5789999864                1378999999866555543 5688


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .|+|++++++++.|||+++..++|.+++++|..   ...+.......|++++++ +|++|++.+..
T Consensus       204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~  265 (349)
T 3v64_C          204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHT  265 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCCC
Confidence            899999999888999999999999999988742   223333334689999995 67899998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.76  E-value=6.8e-16  Score=142.86  Aligned_cols=227  Identities=13%  Similarity=0.133  Sum_probs=165.1

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEEC-CCCcEEEEECC-CcEEEEecCC--cEEEeecc
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTT-QENEILVCDAD-KGLLKVTEEG--VTVLASHV  154 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d-~~g~L~va~~~-~gl~~~~~~g--~~~l~~~~  154 (373)
                      .+.+.++++.|+++.. ..|.+++.+| ..+.+......|. ++++| .++.||+++.. +.|++++.+|  .+.+..  
T Consensus        37 ~C~~~~~~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--  112 (349)
T 3v64_C           37 SCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--  112 (349)
T ss_dssp             CEEESSSCCEEEEECB-SCEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--
T ss_pred             cccccccCceeEeecc-cceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--
Confidence            3455556677777664 4599998766 4455555567789 99999 56789999865 4578888444  444432  


Q ss_pred             CCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEE
Q 017317          155 NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYL  232 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l  232 (373)
                        .....|.+|++|+ +|+||+++..                 .++|++++.++...+.+. ..+..|++++++|++..|
T Consensus       113 --~~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~l  173 (349)
T 3v64_C          113 --TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI  173 (349)
T ss_dssp             --SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred             --CCCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeE
Confidence              1234688999996 6799999864                 468999998866555444 567889999999988889


Q ss_pred             EEEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh
Q 017317          233 VVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK  310 (373)
Q Consensus       233 ~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  310 (373)
                      ||++... ++|++++++|...   ..+.......|+++++|+ +|+||++....                          
T Consensus       174 y~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--------------------------  224 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKH--------------------------  224 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSC---EESCCSSCSCEEEEEEETTTTEEEEEETTT--------------------------
T ss_pred             EEeccCCCCEEEEEeCCCCCc---EEEEECCCCCcceEEEeCCCCEEEEEECCC--------------------------
Confidence            9999988 9999999887432   222222334799999995 66899998754                          


Q ss_pred             hccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEee
Q 017317          311 LVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLP  369 (373)
Q Consensus       311 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~  369 (373)
                              +.|.+++.+|+..+.+-...   ...+.++...+++||+....++.|.+++
T Consensus       225 --------~~I~~~~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          225 --------HVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             --------TEEEEEETTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --------CEEEEEeCCCCceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence                    24788888886544443222   3456777777899999999999999997

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=2.8e-16  Score=160.84  Aligned_cols=230  Identities=12%  Similarity=0.143  Sum_probs=161.8

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEc-CCceEEeeee----------cCccccCeEECCCCcEEEEECCCcEEEEec-CC
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI----------GGDTLLGITTTQENEILVCDADKGLLKVTE-EG  146 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~~~~~~~----------~~~p~~gl~~d~~g~L~va~~~~gl~~~~~-~g  146 (373)
                      ..+|+.|++|+||+|+.+++|.+++. .+.++.+...          ..... +++.|++|+||+++...||.+++. ++
T Consensus       315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKLWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCEEEEEBSSCEEEEETTEE
T ss_pred             EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCEEEEeCCCcEEEEECCCC
Confidence            45788999999999998899999984 3455554321          12345 788999999999987789999994 44


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC---CCCcce
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS---LFFANG  222 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~---~~~~~g  222 (373)
                       .+.+. ...+.....+.+|+.|++|+||+++..                  ++|+++|+++++++.+...   ......
T Consensus       394 ~~~~~~-~~~~~~~~~v~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          394 VAIYNK-ENRELLSNSVLCSLKDSEGNLWFGTYL------------------GNISYYNTRLKKFQIIELEKNELLDVRV  454 (781)
T ss_dssp             EEECC------CCCSBEEEEEECTTSCEEEEETT------------------EEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred             eEEEcc-CCCCCCCcceEEEEECCCCCEEEEecc------------------CCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence             33331 111223356788999999999999743                  6899999988887765431   123345


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC-----CCCCCceeECCCCCEEEEEecCCCchhhhccCChH
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL-----PGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKA  297 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~  297 (373)
                      +..+++|+ +|++..  .+|++|+..+.+..   .+....     ...+..++.|++|+||+++.+.             
T Consensus       455 i~~d~~g~-lwigt~--~Gl~~~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~-------------  515 (781)
T 3v9f_A          455 FYEDKNKK-IWIGTH--AGVFVIDLASKKVI---HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG-------------  515 (781)
T ss_dssp             EEECTTSE-EEEEET--TEEEEEESSSSSCC---EEECTTTSSCSCSCEEEEEECTTCCEEEEESSS-------------
T ss_pred             EEECCCCC-EEEEEC--CceEEEeCCCCeEE---ecccCcccccccceeEEEEEcCCCCEEEEEcCC-------------
Confidence            66777775 888865  68999996543322   222111     1345568899999999999743             


Q ss_pred             HHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeE-EEeeCC
Q 017317          298 TKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFI-GKLPLK  371 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i-~~~~l~  371 (373)
                                            ++++++++++.+..+....+...+.+..+.++ +|+||+|+.  +.+ .+++..
T Consensus       516 ----------------------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~  567 (781)
T 3v9f_A          516 ----------------------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVCFPSAR  567 (781)
T ss_dssp             ----------------------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEEESCTT
T ss_pred             ----------------------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceEEECCC
Confidence                                  27899998888888876666656677888775 689999997  447 777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.75  E-value=2.9e-16  Score=147.37  Aligned_cols=190  Identities=14%  Similarity=0.135  Sum_probs=139.9

Q ss_pred             eEeccCCcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-eEEee-eecCccccCeEECC-CCcEEEEECCC-cEEEE
Q 017317           69 TRLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADK-GLLKV  142 (373)
Q Consensus        69 ~~~~~g~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~  142 (373)
                      ..+..+ +..|.++++|+ ++.||+.+ .+++|++++.+|. .+.+. .....|. ||++|. .|+||+++... .|.++
T Consensus       109 ~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~  186 (386)
T 3v65_B          109 TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVA  186 (386)
T ss_dssp             EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEEC
T ss_pred             EEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEE
Confidence            344444 67899999995 78899665 7789999997764 33332 3345789 999995 67899998764 46666


Q ss_pred             ecCC--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCC
Q 017317          143 TEEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLF  218 (373)
Q Consensus       143 ~~~g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~  218 (373)
                      +.+|  .+.+..    ..+..|++|++|| +|.||+++..                ..++|+++++++...+.+ ..++.
T Consensus       187 ~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~  246 (386)
T 3v65_B          187 NLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLF  246 (386)
T ss_dssp             BTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCS
T ss_pred             eCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCC
Confidence            6555  444432    2345789999997 5689999864                137899999986655544 35678


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .|+||+++++++.|||+++..++|.+++++|..   ...+.......|++++++ +|++|++.+..
T Consensus       247 ~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~~  308 (386)
T 3v65_B          247 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWHT  308 (386)
T ss_dssp             CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCCC
Confidence            899999999888899999999999999987632   223333334589999995 56899998764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=2.6e-16  Score=139.57  Aligned_cols=185  Identities=14%  Similarity=0.218  Sum_probs=135.5

Q ss_pred             CcCCcceEEEecCCCEEEEecCCeEEEEEcCCceE-Eeee-ecCccccCeEECCCCcEEEEECC-CcEEEEec-CCcEEE
Q 017317           75 ILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWE-NWKL-IGGDTLLGITTTQENEILVCDAD-KGLLKVTE-EGVTVL  150 (373)
Q Consensus        75 ~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~-~~~~-~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~~-~g~~~l  150 (373)
                      .+..|.+|+++++|+||+++.+++|++++.++... .+.. ....|. +++++++|+||+++.. ..|++++. +.....
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV  143 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred             CcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence            35679999999999999988788999999766433 2221 225688 9999999999999754 45888873 232222


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg  229 (373)
                      ..   ......+++|+++++|++|+++..                 .++|+++|++++..... ...+..|.+++++++|
T Consensus       144 ~~---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g  203 (270)
T 1rwi_B          144 LP---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG  203 (270)
T ss_dssp             CC---CCSCCSCCCEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC
T ss_pred             ec---cccCCCceeEEEeCCCCEEEEECC-----------------CCEEEEEecCCCceEeecccCCCCceEEEECCCC
Confidence            11   122356889999999999999853                 36899999987665443 2345779999999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      + +|+++..+++|.+|+.++....   .........|.++++|++|++|++....
T Consensus       204 ~-l~v~~~~~~~v~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          204 T-VYVTEHNTNQVVKLLAGSTTST---VLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             C-EEEEETTTSCEEEECTTCSCCE---ECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             C-EEEEECCCCcEEEEcCCCCcce---eeccCCCCCceeEEECCCCCEEEEECCC
Confidence            5 9999998899999987653221   1111112468899999999999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.75  E-value=5.9e-16  Score=141.36  Aligned_cols=184  Identities=11%  Similarity=0.094  Sum_probs=135.1

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCC----c-eEEee-eecCccccCeEECC-CCcEEEEECC-CcEEEEecC
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG----T-WENWK-LIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEE  145 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g----~-~~~~~-~~~~~p~~gl~~d~-~g~L~va~~~-~gl~~~~~~  145 (373)
                      +..|+++++|+ ++.||+.+ .+++|++++.+|    . .+.+. .....|. ||++|. +++||+++.. +.|.+++.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            67899999997 67899666 678999999665    2 23322 2346788 999994 6789999865 457777755


Q ss_pred             C--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcc
Q 017317          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~  221 (373)
                      |  .+.+..    ..+..|++|++|| +|.||+++..                ..++|+++++++...+.+. ..+..|+
T Consensus       108 g~~~~~~~~----~~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A          108 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (316)
T ss_dssp             SSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCceEEEEE----CCCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCce
Confidence            5  444433    1245789999997 6789999864                1368999998865555443 4678999


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCCEEEEEecC
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      |++++++++.|||+++..++|.+++.+|..   .+.+...  ....|.++++| +|++|++.+..
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~  228 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEE-CCEEEEEECCC
Confidence            999999988999999999999999988643   2333322  23579999997 47899998764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.74  E-value=4.8e-16  Score=138.22  Aligned_cols=202  Identities=14%  Similarity=0.112  Sum_probs=147.9

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCce-EEeee-ecCccccCeEECCC-CcEEEEECCC-cEEEEecCC--c
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW-ENWKL-IGGDTLLGITTTQE-NEILVCDADK-GLLKVTEEG--V  147 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~-~~~~~-~~~~p~~gl~~d~~-g~L~va~~~~-gl~~~~~~g--~  147 (373)
                      ...|+++++|+ ++.||+++ .+++|.+++.+|.. +.+.. ....|. +|++|++ ++||+++... .|.+++.+|  .
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            35689999998 68899776 57899999977643 33322 235799 9999974 6899998754 577777555  4


Q ss_pred             EEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEE
Q 017317          148 TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVAL  225 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~  225 (373)
                      +.+..    ..+..|+++++++ +|+||+++..               ...+.|++++.++...+.+. ..+..|+|+++
T Consensus       114 ~~~~~----~~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A          114 RVLFD----TGLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEEEC----SSCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEE----CCCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            44432    1235789999999 5799999853               12468999998765544443 45778999999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhc
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAF  305 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~  305 (373)
                      +++++.|||++...++|.+++.++.   ....+.. ....|.+++.| +|++|++....                     
T Consensus       175 d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~---------------------  228 (267)
T 1npe_A          175 DAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY-GKNLYYTDWKT---------------------  228 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE-TTEEEEEETTT---------------------
T ss_pred             cCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe-CCEEEEEECCC---------------------
Confidence            9998899999999999999997653   2222332 23579999998 68999998764                     


Q ss_pred             chhhhhccCCCccEEEEEECCC-CcEEEEEeC
Q 017317          306 PKLIKLVAPLHKKAAVVNVAAN-GIVIRKFED  336 (373)
Q Consensus       306 ~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~  336 (373)
                                   +.|.+++++ |+.+..+..
T Consensus       229 -------------~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          229 -------------NSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             -------------TEEEEEETTTTEEEEEECC
T ss_pred             -------------CeEEEEeCCCCCceEEEcc
Confidence                         247889975 788777753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.8e-16  Score=160.80  Aligned_cols=228  Identities=13%  Similarity=0.125  Sum_probs=162.2

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEc-CCceEEeee---ecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEee
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKL---IGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~~~~~~---~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      ..+++.|++|+||+|+.+++|+++++ +++++.+..   ...... .|+.|++|+||+++. .||++++ .++ .+.+..
T Consensus       409 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~  486 (781)
T 3v9f_A          409 VLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR-VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYD  486 (781)
T ss_dssp             EEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE-EEEECTTSEEEEEET-TEEEEEESSSSSCCEEEC
T ss_pred             eEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE-EEEECCCCCEEEEEC-CceEEEeCCCCeEEeccc
Confidence            45688899999999998889999994 466665542   123455 788999999999987 7999999 555 554432


Q ss_pred             cc-CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--CCC--CcceEEEcc
Q 017317          153 HV-NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLF--FANGVALSK  227 (373)
Q Consensus       153 ~~-~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~--~~~gi~~~~  227 (373)
                      .. .......+.+|+.|++|+||+++..                  ++|+++|+++++++.+..  ++.  ....+..++
T Consensus       487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~  548 (781)
T 3v9f_A          487 TSNSQLLENFVRSIAQDSEGRFWIGTFG------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS  548 (781)
T ss_dssp             TTTSSCSCSCEEEEEECTTCCEEEEESS------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECT
T ss_pred             CcccccccceeEEEEEcCCCCEEEEEcC------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC
Confidence            21 1122356788999999999999753                  579999998887776543  222  234677788


Q ss_pred             CCCEEEEEeCCCCeE-EEEEecCCCCcceeEEecCCCCCC----CceeECCCCCEEEEEecCCCchhhhccCChHHHHHH
Q 017317          228 DEDYLVVCETFKFRC-LKYWLKGESKEQTEIFVENLPGGP----DNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLL  302 (373)
Q Consensus       228 dg~~l~v~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~g~p----~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~  302 (373)
                      +|+ +|++..  .++ ++|+....   .+..+.. ..++|    .+++.|++|+||+++..+                  
T Consensus       549 ~g~-lWi~T~--~Glv~~~d~~~~---~~~~~~~-~~gl~~~~i~~i~~d~~g~lW~~t~~G------------------  603 (781)
T 3v9f_A          549 KGQ-MWLATG--EGLVCFPSARNF---DYQVFQR-KEGLPNTHIRAISEDKNGNIWASTNTG------------------  603 (781)
T ss_dssp             TSC-EEEEET--TEEEEESCTTTC---CCEEECG-GGTCSCCCCCEEEECSSSCEEEECSSC------------------
T ss_pred             CCC-EEEEEC--CCceEEECCCCC---cEEEccc-cCCCCCceEEEEEECCCCCEEEEcCCc------------------
Confidence            887 888865  577 89885443   3334431 22333    468899999999999765                  


Q ss_pred             HhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecce--eEEEE-eCCEEEEeeCCCCeEEEeeCC
Q 017317          303 AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFV--TSALE-FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       303 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~--~~~~~-~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                        +.+++++.+.+..|...+|......  .++.. .+|+||+|+..+  +.++++.
T Consensus       604 ------------------l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--l~~f~p~  655 (781)
T 3v9f_A          604 ------------------ISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSING--LCFFNPD  655 (781)
T ss_dssp             ------------------EEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTE--EEEECSC
T ss_pred             ------------------eEEEECCCCceEEecccCCccccccccCceEECCCCEEEEECCCc--eEEEChh
Confidence                              7999999999999977777543322  23333 478999999865  8888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.74  E-value=1.4e-15  Score=142.67  Aligned_cols=228  Identities=13%  Similarity=0.122  Sum_probs=165.8

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEEC-CCCcEEEEECC-CcEEEEecCC--cEEEeecc
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTT-QENEILVCDAD-KGLLKVTEEG--VTVLASHV  154 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d-~~g~L~va~~~-~gl~~~~~~g--~~~l~~~~  154 (373)
                      .+.+.++++.|+++.. ..|.+++.++ ..+.+......|. ++++| .++.||+++.. +.|++++.+|  .+.+..  
T Consensus        80 ~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--  155 (386)
T 3v65_B           80 SCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--  155 (386)
T ss_dssp             CEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC--
T ss_pred             eECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe--
Confidence            3455556677777654 5699998655 4555555667899 99999 46789999865 4578888444  444322  


Q ss_pred             CCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEE
Q 017317          155 NGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYL  232 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l  232 (373)
                        .....|.+|++|+ +|+||+++..                 .++|++++.++...+.+ ...+..|++++++|++..|
T Consensus       156 --~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~l  216 (386)
T 3v65_B          156 --TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI  216 (386)
T ss_dssp             --SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             --CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeE
Confidence              2234688999996 6799999874                 46899999886654444 3567889999999988889


Q ss_pred             EEEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh
Q 017317          233 VVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK  310 (373)
Q Consensus       233 ~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  310 (373)
                      ||++... ++|++++++|...   ..+.......|+++++|+ +|+||++....                          
T Consensus       217 y~td~~~~~~I~r~~~dG~~~---~~~~~~~~~~PnGlavd~~~~~lY~aD~~~--------------------------  267 (386)
T 3v65_B          217 YWTDWGNTPRIEASSMDGSGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKH--------------------------  267 (386)
T ss_dssp             EEEECSSSCEEEEEETTSCSC---EEEECSSCSCEEEEEEEGGGTEEEEEETTT--------------------------
T ss_pred             EEeccCCCCEEEEEeCCCCCc---EEEEECCCCCeeeEEEeCCCCEEEEEECCC--------------------------
Confidence            9999988 8999999887422   233323334699999995 67899998654                          


Q ss_pred             hccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeC
Q 017317          311 LVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       311 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l  370 (373)
                              +.|.+++.+|+..+.+....   ...+.++...+++||+....++.|.+++.
T Consensus       268 --------~~I~~~d~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          268 --------HVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             --------TEEEEECTTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --------CEEEEEeCCCCeeEEEEECC---CCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence                    25788898886544443322   34567777778999999999999999973

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.74  E-value=2.4e-15  Score=133.69  Aligned_cols=219  Identities=12%  Similarity=0.135  Sum_probs=155.3

Q ss_pred             CEEEEecCCeEEEEEcCCceE-------EeeeecCccccCeEECC-CCcEEEEECCC-cEEEEecCC--cEEEeeccCCc
Q 017317           89 VLYTATRDGWIKRLHKNGTWE-------NWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG--VTVLASHVNGS  157 (373)
Q Consensus        89 ~l~v~~~~g~I~~~~~~g~~~-------~~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g--~~~l~~~~~~~  157 (373)
                      .||+++. +.|.+++.+|...       .+......|. ++++|+ +++||+++... .|.+++.+|  .+.+..    .
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~-gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~   76 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----Q   76 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----T
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEE-EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----C
Confidence            4666654 4899998666421       1222235688 999997 56899998754 578888444  443322    2


Q ss_pred             cccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEE
Q 017317          158 RINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       158 ~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~  235 (373)
                      .+..|++|+++++ |+||+++..                 .++|++++.++...+.+. .++..|++++++++++.|||+
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence            2357899999985 689999864                 468999998765444433 356789999999987789999


Q ss_pred             eCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhc
Q 017317          236 ETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLV  312 (373)
Q Consensus       236 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  312 (373)
                      +..  .++|+++++++...   ..+.......|.++++|++| +||++....                            
T Consensus       140 ~~~~~~~~I~~~~~dg~~~---~~~~~~~~~~P~gia~d~~~~~lyv~d~~~----------------------------  188 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAGT----------------------------  188 (267)
T ss_dssp             ECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETTT----------------------------
T ss_pred             ECCCCCcEEEEEecCCCCc---EEEEECCCCCCcEEEEcCCCCEEEEEECCC----------------------------
Confidence            986  57999999876432   22332223579999999965 799998764                            


Q ss_pred             cCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          313 APLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       313 ~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                            +.|.+++.+|.....+...    ...+..+..++++||++...++.|.++++.
T Consensus       189 ------~~I~~~~~~g~~~~~~~~~----~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          189 ------HRAECLNPAQPGRRKVLEG----LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             ------TEEEEEETTEEEEEEEEEC----CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ------CEEEEEecCCCceEEEecC----CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence                  2478888887655544321    234566766789999999999999999876

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.74  E-value=3.8e-15  Score=136.25  Aligned_cols=212  Identities=18%  Similarity=0.236  Sum_probs=141.3

Q ss_pred             ccceeEeccCCcCCcceEEEecCCCEEEEec-CCeEEEEEc-CCceEEeee-------ecCccccCeEECC----CCcEE
Q 017317           65 IQSVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLHK-NGTWENWKL-------IGGDTLLGITTTQ----ENEIL  131 (373)
Q Consensus        65 l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~-~g~~~~~~~-------~~~~p~~gl~~d~----~g~L~  131 (373)
                      ...++.++++ +..|++|++.++|+||++.. .|+|++++. +|+.+.+..       ..+.++ ||++++    +|.||
T Consensus        21 ~~~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~lY   98 (347)
T 3das_A           21 VKVLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMVY   98 (347)
T ss_dssp             EEEEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEEE
T ss_pred             CceeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEEE
Confidence            3467788887 89999999999999999997 899999984 455544321       234578 999997    48899


Q ss_pred             EEE---CCCcEEEEe-cC-----C----cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCc
Q 017317          132 VCD---ADKGLLKVT-EE-----G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (373)
Q Consensus       132 va~---~~~gl~~~~-~~-----g----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g  198 (373)
                      ++.   ....|.++. ..     .    .+.+....+....+....|++++||.|||+....  +..+..++.  ....|
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~--~~~~~~qd~--~~~~G  174 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES--GDTGLSQDR--KSLGG  174 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT--TCGGGTTCT--TCSTT
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC--CCCccccCC--CCCCC
Confidence            973   235688886 32     1    3444443433445677889999999999996542  111111111  13468


Q ss_pred             eEEEEeCCCC--------eEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe--cCCCCcceeEE--------e-
Q 017317          199 KLLKYDPSLN--------ETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL--KGESKEQTEIF--------V-  259 (373)
Q Consensus       199 ~l~~~d~~~~--------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~--~~~~~~~~~~~--------~-  259 (373)
                      .|+|+++++.        ..+++..++.+|.|++++++|+ ||+++.+.+....++.  .|...+.....        . 
T Consensus       175 ~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~  253 (347)
T 3das_A          175 KILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHD  253 (347)
T ss_dssp             CEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCC
T ss_pred             EEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccC
Confidence            9999999865        3457788999999999999987 9999987643232222  33333221100        0 


Q ss_pred             ---cCCC--CCCCceeECCCCCEEEEEecC
Q 017317          260 ---ENLP--GGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       260 ---~~~~--g~p~~i~~d~dG~lwva~~~~  284 (373)
                         .-.+  .-|.|+++. +|.+|++...+
T Consensus       254 P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~  282 (347)
T 3das_A          254 PVAQWSTDEASPSGIAYA-EGSVWMAGLRG  282 (347)
T ss_dssp             CSEEECTTTCCEEEEEEE-TTEEEEEESTT
T ss_pred             CcEecCCCCCCCcceEEE-cCceeeccccC
Confidence               0001  246788885 68899998764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.73  E-value=5.3e-16  Score=159.07  Aligned_cols=226  Identities=16%  Similarity=0.224  Sum_probs=160.0

Q ss_pred             cceEEEecCCC-EEEEecCCeEEEEEc-CCceEEeeee-----cCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEE
Q 017317           79 PEDVCVDRNGV-LYTATRDGWIKRLHK-NGTWENWKLI-----GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTV  149 (373)
Q Consensus        79 P~~ia~d~~G~-l~v~~~~g~I~~~~~-~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~  149 (373)
                      ..+++.|++|+ ||+|+.+++|+++++ +++++.+...     ..... +++.|++|+||+++. .||++++ .++ .+.
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence            45788899999 999999889999994 5666665421     23345 788999999999997 7999999 566 554


Q ss_pred             Eeecc--CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----CC--CCc
Q 017317          150 LASHV--NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SL--FFA  220 (373)
Q Consensus       150 l~~~~--~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~--~~~  220 (373)
                      +....  .+.....+.++..|++|+||+++.                   ++|+++|++++++ .+..     .+  ...
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i  545 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------------EGLSVFKQEGLDI-QKASILPVSNVTKLFT  545 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------------SCEEEEEEETTEE-EECCCSCSCGGGGSCE
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC-------------------CceEEEeCCCCeE-EEecCCCCCCCCCCee
Confidence            43211  112234677899999999999974                   4799999887766 3321     11  123


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCc----eeECCCCCEEEEEecCCCchhhhccCCh
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDN----IKLAPDGSFWIAILQLSSPGLEFVHTSK  296 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~----i~~d~dG~lwva~~~~~~~~~~~~~~~p  296 (373)
                      ..+..+++|+ +|++...  +|++|+...   ..+..+. ...++|++    ++.|++|+||+++..+            
T Consensus       546 ~~i~~d~~g~-lWigT~~--Gl~~~d~~~---~~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~G------------  606 (795)
T 4a2l_A          546 NCIYEASNGI-IWVGTRE--GFYCFNEKD---KQIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNRG------------  606 (795)
T ss_dssp             EEEEECTTSC-EEEEESS--CEEEEETTT---TEEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTE------------
T ss_pred             EEEEECCCCC-EEEEeCC--CceeECCCC---CcEEEeC-CCCCCchhheEEEEECCCCCEEEEcCCc------------
Confidence            4677788887 8888653  799998543   2344443 23345554    7789999999999654            


Q ss_pred             HHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecce--eEEEE-eCCEEEEeeCCCCeEEEeeCC
Q 017317          297 ATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFV--TSALE-FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~--~~~~~-~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                              +.+++++.+.+..|...+|...+..  .++.. .+|+||+|+.++  +.++++.
T Consensus       607 ------------------------l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--l~~~~p~  658 (795)
T 4a2l_A          607 ------------------------ISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING--ITTFRPE  658 (795)
T ss_dssp             ------------------------EEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE--EEEECGG
T ss_pred             ------------------------eEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc--eEEEcHH
Confidence                                    7899999888888877777544433  23343 468999999865  8887753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.73  E-value=6.9e-16  Score=140.84  Aligned_cols=184  Identities=16%  Similarity=0.123  Sum_probs=136.5

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCce---EEeeeecCccccCeEECC-CCcEEEEECCC-cEEEEecCC--
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW---ENWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG--  146 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~---~~~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g--  146 (373)
                      +..|.++++|+ +|.||..+ .+++|++++.+|..   ..+......|. |+++|. .|+||+++... .|.+++.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            56688888987 78898655 77899999976642   23333456789 999995 77899998754 577777555  


Q ss_pred             cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEE
Q 017317          147 VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVA  224 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~  224 (373)
                      .+.+..    ..+..|++|++|+ +|.||+++..                ..++|+++++++...+.+ ..++..|+|++
T Consensus       113 ~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A          113 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             CEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence            444432    2345789999997 5799999853                247899999986554444 45688999999


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ++++++.|||+++..++|.+++++|..   .+.+.......|+++++|. +++|++.+..
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~glav~~-~~lywtd~~~  228 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFE-DILYWTDWST  228 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSCCSCEEEEEEET-TEEEEEETTT
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCCc---eEEEecCCCCCceEEEEeC-CEEEEEecCC
Confidence            999888899999999999999988742   2334433346899999985 4677777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=3.4e-16  Score=140.23  Aligned_cols=184  Identities=13%  Similarity=0.189  Sum_probs=134.2

Q ss_pred             CcCCcceEEE-ecCCCEEEEec--CCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEECC-CcEEEEecCC--
Q 017317           75 ILNGPEDVCV-DRNGVLYTATR--DGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVTEEG--  146 (373)
Q Consensus        75 ~~~~P~~ia~-d~~G~l~v~~~--~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~~~g--  146 (373)
                      .+..|.++++ +++|+||+++.  +++|.+++.+|+......  ....|. +++++++|++||++.. ..|++++.+|  
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~  153 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNV  153 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce-EEEEeCCCCEEEEECCCCEEEEEcCCCCE
Confidence            3567999999 57999998874  789999998776543221  134688 9999999999999864 4588888656  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVA  224 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~  224 (373)
                      ...+...   .....|++|+++++|++|+++..                 .++|+++|+++.....+...  +..|.+++
T Consensus       154 ~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~  213 (286)
T 1q7f_A          154 LHKFGCS---KHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVG  213 (286)
T ss_dssp             EEEEECT---TTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEE
T ss_pred             EEEeCCC---CccCCcEEEEECCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEEccCCccCCCcEEE
Confidence            3333211   23356899999999999999853                 46899999876554444322  46799999


Q ss_pred             EccCCCEEEEEeCCCC-eEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCCEEEEEec
Q 017317          225 LSKDEDYLVVCETFKF-RCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ++++|+ +|+++..++ +|.+|+.++..   ...+... ....|.+++++++|++|++...
T Consensus       214 ~d~~G~-l~v~~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~  270 (286)
T 1q7f_A          214 INSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASKD  270 (286)
T ss_dssp             ECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             ECCCCC-EEEEeCCCCEEEEEECCCCCE---EEEEcccCCCCcceeEEECCCCcEEEECCC
Confidence            999997 999998876 99999865432   2222222 1234778999999999999643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.71  E-value=1e-14  Score=133.14  Aligned_cols=221  Identities=14%  Similarity=0.151  Sum_probs=156.4

Q ss_pred             EEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECC-CCcEEEEECC-CcEEEEe-cC----C-cEEEeeccCCcccc
Q 017317           90 LYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVT-EE----G-VTVLASHVNGSRIN  160 (373)
Q Consensus        90 l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~-~g~L~va~~~-~gl~~~~-~~----g-~~~l~~~~~~~~~~  160 (373)
                      |++++. ..|.+++.++ +.+.+......|. ++++|+ +++||+++.. +.|++++ ..    . .+.+..    ..+.
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~-g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~~   77 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQ   77 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCS
T ss_pred             EEEECC-CeEEEEECCCcceEehhcCCCceE-EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCCC
Confidence            455554 4588888544 4444444567899 999996 5689999875 4588888 33    2 232221    2345


Q ss_pred             ccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEeCC
Q 017317          161 LADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       161 ~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .|.+|++|+ +|+||+++..                 .++|.+++.++...+.+. ..+..|++++++|++..|||++..
T Consensus        78 ~p~glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~  140 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  140 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             CcCEEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC
Confidence            688999996 6799999864                 478999999866555544 467889999999988889999987


Q ss_pred             C-CeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCC
Q 017317          239 K-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLH  316 (373)
Q Consensus       239 ~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  316 (373)
                      . ++|++++++|..   ...+.......|+++++|+ +++||++....                                
T Consensus       141 ~~~~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~--------------------------------  185 (316)
T 1ijq_A          141 TPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL--------------------------------  185 (316)
T ss_dssp             SSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT--------------------------------
T ss_pred             CCCeEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECCC--------------------------------
Confidence            5 899999987743   2233322335799999996 56899998654                                


Q ss_pred             ccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          317 KKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       317 ~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                        +.|.+++.+|+..+.+....+. ...+.++...+++||+....++.|.+++..
T Consensus       186 --~~I~~~d~dg~~~~~~~~~~~~-~~~P~giav~~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          186 --HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             --TEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             --CeEEEEecCCCceEEEeecCCc-cCCcEEEEEECCEEEEEECCCCeEEEEeCC
Confidence              2478888888655554322111 345677777789999999999999999863

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=4.2e-16  Score=143.03  Aligned_cols=192  Identities=10%  Similarity=0.137  Sum_probs=132.6

Q ss_pred             ccCCcCCcceEEEecCCCEEEEe-cCCeEEEEEcCCce---EEee---------eecCccccCeEECC-CCcEEEEEC--
Q 017317           72 GEGILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTW---ENWK---------LIGGDTLLGITTTQ-ENEILVCDA--  135 (373)
Q Consensus        72 ~~g~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~~---~~~~---------~~~~~p~~gl~~d~-~g~L~va~~--  135 (373)
                      ..+.+..|.+|++|++|+||+++ .+++|.+++.+|+.   ..+.         .....|. ++++++ +|+|||++.  
T Consensus        86 ~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~lyv~d~~~  164 (329)
T 3fvz_A           86 GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAVFVSDGYC  164 (329)
T ss_dssp             CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCEEEEECSS
T ss_pred             CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeEEEEeCCC
Confidence            34557789999999999999776 57899999987762   2221         1123688 999998 899999994  


Q ss_pred             CCcEEEEecCC--cEEEeeccC-----CccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317          136 DKGLLKVTEEG--VTVLASHVN-----GSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       136 ~~gl~~~~~~g--~~~l~~~~~-----~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      .+.|.+++.+|  ...+.....     ...+..|++|+++++ |+|||++..                 +++|.++|+++
T Consensus       165 ~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-----------------~~~I~~~~~~~  227 (329)
T 3fvz_A          165 NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-----------------NGRIQCFKTDT  227 (329)
T ss_dssp             CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTT
T ss_pred             CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-----------------CCEEEEEECCC
Confidence            45688888666  333322211     124567999999998 899999864                 57899999986


Q ss_pred             CeEEEeec---CCCCcceEEEcc------CCCEEEEEeCCCCeEEEEEecCCCCcceeEEe--cCCCCCCCceeECCCCC
Q 017317          208 NETSILLD---SLFFANGVALSK------DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV--ENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       208 ~~~~~~~~---~~~~~~gi~~~~------dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~g~p~~i~~d~dG~  276 (373)
                      ++......   ....+.+++++|      +|+ +|+++....++..++....+.  ...+.  ......|.++++|++|+
T Consensus       228 G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          228 KEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGT  304 (329)
T ss_dssp             CCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSE
T ss_pred             CcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCC
Confidence            65543321   122344455555      666 777777777899998653321  12221  12234699999999999


Q ss_pred             EEEEEecC
Q 017317          277 FWIAILQL  284 (373)
Q Consensus       277 lwva~~~~  284 (373)
                      +||+....
T Consensus       305 lyvad~~~  312 (329)
T 3fvz_A          305 VYIGDAHT  312 (329)
T ss_dssp             EEEEESSS
T ss_pred             EEEEECCC
Confidence            99998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.70  E-value=4.8e-15  Score=139.66  Aligned_cols=184  Identities=11%  Similarity=0.091  Sum_probs=134.5

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCC-----ceEE-eeeecCccccCeEECC-CCcEEEEECCC-cEEEEecC
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-----TWEN-WKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEE  145 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g-----~~~~-~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~  145 (373)
                      +..|.+|++|+ ++.||+.+ .+++|++++.+|     ..+. +......|. ||++|. .++||+++... .|.+++.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            67899999997 78899665 678999999665     2233 333456789 999996 77899998764 46666655


Q ss_pred             C--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcc
Q 017317          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFAN  221 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~  221 (373)
                      |  .+.+..    ..+..|++|++|| +|.||+++..                ..++|++++.++...+.+ ..++..|+
T Consensus       190 g~~~~~l~~----~~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          190 GVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TCSEEEEEE----CSSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEEe----CCCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceE
Confidence            5  444433    1345689999998 5799999864                236899999986655544 45678999


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCCEEEEEecC
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ||+++++++.|||+++..++|.+++++|...   +.+...  ....|.+++++. +++|++.+..
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~  310 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  310 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCC---EEEEECSSTTSSEEEEEEET-TEEEEEESSS
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEeC-CEEEEecCCC
Confidence            9999998889999999999999999887432   233322  235788999954 5788777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.67  E-value=2.4e-14  Score=130.58  Aligned_cols=222  Identities=12%  Similarity=0.066  Sum_probs=158.0

Q ss_pred             CCCEEEEecCCeEEEEEcCCc---eEEeeeecCccccCeEECC-CCcEEEEECCC-cEEEEecCC--c-EEEeeccCCcc
Q 017317           87 NGVLYTATRDGWIKRLHKNGT---WENWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG--V-TVLASHVNGSR  158 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~~~g~---~~~~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g--~-~~l~~~~~~~~  158 (373)
                      ...|+++. ...|.+++.++.   .+........+. ++.++. ++.||++|... .|.+++.+|  . +.+..    ..
T Consensus         4 ~p~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----~~   77 (318)
T 3sov_A            4 APLLLYAN-RRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SG   77 (318)
T ss_dssp             CCEEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE----EC
T ss_pred             ccEEEEEc-cCeEEEEECCCCceEEEEEecCCCccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc----CC
Confidence            34566655 357888986553   333333345677 888885 57899998754 577887433  2 22222    12


Q ss_pred             ccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEe
Q 017317          159 INLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       159 ~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~  236 (373)
                      +..|.+|++|+ +|+||+++..                 .++|.++++++...+.+. ..+..|+|+++++++..|||++
T Consensus        78 l~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDSE-----------------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEE
T ss_pred             CCCccEEEEEcCCCeEEEEECC-----------------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence            34688999996 6799999864                 478999999866555544 6788899999999877899999


Q ss_pred             CC-CCeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC
Q 017317          237 TF-KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP  314 (373)
Q Consensus       237 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  314 (373)
                      .. ..+|++++++|...   ..+....-..|+++++|+ +|+||++....                              
T Consensus       141 ~~~~~~I~r~~~dG~~~---~~~~~~~l~~Pnglavd~~~~~lY~aD~~~------------------------------  187 (318)
T 3sov_A          141 WGEVPKIERAGMDGSSR---FIIINSEIYWPNGLTLDYEEQKLYWADAKL------------------------------  187 (318)
T ss_dssp             CSSSCEEEEEETTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEETTT------------------------------
T ss_pred             cCCCCEEEEEEcCCCCe---EEEEECCCCCccEEEEeccCCEEEEEECCC------------------------------
Confidence            75 68999999887432   233322335799999997 66899998654                              


Q ss_pred             CCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          315 LHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       315 ~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                          +.|.+++.+|+..+.+....   ...+.++...+++||+....+..|.+++..
T Consensus       188 ----~~I~~~d~dG~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          188 ----NFIHKSNLDGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             ----TEEEEEETTSCSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ----CEEEEEcCCCCceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEECC
Confidence                24788888886655554312   345677777788999999999999999874

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.67  E-value=1.4e-14  Score=143.78  Aligned_cols=185  Identities=14%  Similarity=0.087  Sum_probs=143.0

Q ss_pred             CCcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-eEEeee-ecCccccCeEECC-CCcEEEEECCC-cEEEEecCC-
Q 017317           74 GILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWKL-IGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG-  146 (373)
Q Consensus        74 g~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-~~~~~~-~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g-  146 (373)
                      ..+..|.+|++|+ +|.||+++ .+++|++++.+|. .+.+.. ....|. ||++|. .++||+++... .|.+++.+| 
T Consensus        34 ~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           34 TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            3467899999997 78999665 6799999997774 343333 335799 999994 56899998764 466666556 


Q ss_pred             -cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          147 -VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                       .+.+..    ..+..|++|++|| +|.||++|.+                ..++|+++++++...+.+...+..|+|++
T Consensus       113 ~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~Gla  172 (628)
T 4a0p_A          113 HRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANGLT  172 (628)
T ss_dssp             TCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEEEE
T ss_pred             cEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcceEE
Confidence             455542    2345789999997 6899999864                24799999999877777778899999999


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ++++++.|||++...++|.+++++|...   +.+... ...|.+++++. +++|++.+..
T Consensus       173 lD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~-l~~P~glav~~-~~ly~tD~~~  227 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADD-LPHPFGLTQYQ-DYIYWTDWSR  227 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC---EEEEEC-CSCEEEEEEET-TEEEEEETTT
T ss_pred             EccccCEEEEEECCCCEEEEEcCCCCce---EEeecc-CCCceEEEEEC-CEEEEecCCC
Confidence            9999889999999999999999987432   334333 34799999986 7899998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.67  E-value=4.2e-14  Score=133.19  Aligned_cols=223  Identities=13%  Similarity=0.129  Sum_probs=159.6

Q ss_pred             CCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECC-CCcEEEEECCC-cEEEEecCC------cEEEeeccCCc
Q 017317           87 NGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG------VTVLASHVNGS  157 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g------~~~l~~~~~~~  157 (373)
                      ...|+++. ...|.+++.++ ..+.+......+. +|++|. ++.||++|... .|++++.+|      .+.+..    .
T Consensus        83 ~~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~-~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~----~  156 (400)
T 3p5b_L           83 IAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----R  156 (400)
T ss_dssp             SCEEEEEE-TTEEEEECTTSCSCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC----S
T ss_pred             cceeEEec-cceeEEEccCCcceeEeccccCcce-EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe----C
Confidence            34555554 46799998554 3555555567889 999995 67899998754 577777332      222222    2


Q ss_pred             cccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEE
Q 017317          158 RINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       158 ~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~v~  235 (373)
                      ....|.+|++|. .++||++|..                 .++|.+++.++...+.+. ..+..|++|+++|.+..|||+
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEE
Confidence            345788999997 6899999864                 478999999877655554 477889999999988889999


Q ss_pred             eCCC-CeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhcc
Q 017317          236 ETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVA  313 (373)
Q Consensus       236 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  313 (373)
                      +.+. .+|++++++|...   ..+.......|.+|++|+ +++||++....                             
T Consensus       220 d~~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glavd~~~~~lY~aD~~~-----------------------------  267 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKL-----------------------------  267 (400)
T ss_dssp             ECSSSCCEEEEETTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEETTT-----------------------------
T ss_pred             eCCCCCEEEEEeCCCCcc---EEEEECCCCceEEEEEEeCCCEEEEEECCC-----------------------------
Confidence            9764 7999999887432   223323335799999995 56899998653                             


Q ss_pred             CCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeC
Q 017317          314 PLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       314 ~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l  370 (373)
                           ..|.+++.+|+..+.+....+. ...+.++...+++||+....++.|.+++.
T Consensus       268 -----~~I~~~d~dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          268 -----HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             -----TEEEEEETTSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             -----CEEEEEeCCCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence                 2478888888765555332222 35567777788999999999999999973

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.67  E-value=1.7e-13  Score=125.82  Aligned_cols=236  Identities=15%  Similarity=0.121  Sum_probs=159.3

Q ss_pred             CCcceEEEecCC-CEEEEec-------CCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-c
Q 017317           77 NGPEDVCVDRNG-VLYTATR-------DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E  144 (373)
Q Consensus        77 ~~P~~ia~d~~G-~l~v~~~-------~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~  144 (373)
                      .+|..++++++| .+|+++.       ++.|..++ .+++..........+. +++++++|+ +|+++.. ..+..++ .
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            568899999976 5777763       46799999 4566544444566788 999999997 8888764 4577788 5


Q ss_pred             CC-c-EEEeeccCC----ccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-C
Q 017317          145 EG-V-TVLASHVNG----SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S  216 (373)
Q Consensus       145 ~g-~-~~l~~~~~~----~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~  216 (373)
                      ++ . ..+......    .....+.+++++++|+ +|+++..                ..+.|+.+|..+++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            66 3 333221110    0111367899999985 8888632                24689999998887765554 4


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec---CCCCCCCceeECCCCC-EEEEEecCCCchhhhc
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE---NLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFV  292 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~  292 (373)
                      ...+.++++++||+.+|+++. ++.+..++....+..  ..+..   .....+.+++++++|+ +|++....        
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------  252 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKIL--SRKKLLDDGKEHFFINISLDTARQRAFITDSKA--------  252 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEE--EEEECCCSSSCCCEEEEEEETTTTEEEEEESSS--------
T ss_pred             CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEE--EEEEcCCCCCCcccceEEECCCCCEEEEEeCCC--------
Confidence            456899999999998998875 678999986543221  11111   1223566789999997 77776542        


Q ss_pred             cCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe--CCEEEEeeCCCCeEEEee
Q 017317          293 HTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLP  369 (373)
Q Consensus       293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~  369 (373)
                                                +.+..+|. +++.+..+.....      ..+..+  +++||+++...+.|.+++
T Consensus       253 --------------------------~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          253 --------------------------AEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             --------------------------SEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             --------------------------CEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence                                      24677775 5777776654331      234443  346999998888999988


Q ss_pred             CCC
Q 017317          370 LKA  372 (373)
Q Consensus       370 l~~  372 (373)
                      +..
T Consensus       301 ~~~  303 (353)
T 3vgz_A          301 AKS  303 (353)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.67  E-value=1.1e-14  Score=134.88  Aligned_cols=168  Identities=14%  Similarity=0.156  Sum_probs=116.5

Q ss_pred             ceeEeccCCcCCcceEEEecCCC-EEEEecCCeEEEEEcCCceEE-ee-------eecCccccCeEECC----CCcEEEE
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGV-LYTATRDGWIKRLHKNGTWEN-WK-------LIGGDTLLGITTTQ----ENEILVC  133 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~-l~v~~~~g~I~~~~~~g~~~~-~~-------~~~~~p~~gl~~d~----~g~L~va  133 (373)
                      +++.++++ +..|++|+++++|+ ||++...|+|++++.+|+... +.       ...+.++ +|++++    ++.||++
T Consensus         9 ~~~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A            9 NVEVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEE
T ss_pred             EEEEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEE
Confidence            56666665 89999999999999 999998999999997775431 21       1124568 999998    5899998


Q ss_pred             ECC--------CcEEEEe-c-C-C-c---EEEeeccCC--ccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317          134 DAD--------KGLLKVT-E-E-G-V---TVLASHVNG--SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       134 ~~~--------~gl~~~~-~-~-g-~---~~l~~~~~~--~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      ...        ..|.+++ . + + +   +.+....+.  ...+.+.+|++++||.|||+......  ....++.  ...
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~~--~~~  162 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQDL--DKL  162 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGGCT--TSC
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccCCC--CCC
Confidence            542        3577776 3 2 2 2   233333221  23456789999999999999754211  1111111  234


Q ss_pred             CceEEEEeCCCC-------------eEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          197 HGKLLKYDPSLN-------------ETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       197 ~g~l~~~d~~~~-------------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                      .|+|+|+++++.             ..+.+..++.+|.|++++++...||+++.+.+
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~  219 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPR  219 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSB
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCC
Confidence            579999999864             34567778899999999995445999998754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.66  E-value=2.2e-14  Score=128.81  Aligned_cols=189  Identities=13%  Similarity=0.134  Sum_probs=127.8

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcC-CceEEeeeec----C----ccccCeEE---CCCCcEEEE-EC-----
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKN-GTWENWKLIG----G----DTLLGITT---TQENEILVC-DA-----  135 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~-g~~~~~~~~~----~----~p~~gl~~---d~~g~L~va-~~-----  135 (373)
                      -..||++.+|+ +|++|+++ .+++|.+++++ +..+.+....    +    .+. ||.+   |++|+|||+ +.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            35699999987 89999998 78999999976 4444442111    1    357 9999   789999985 41     


Q ss_pred             --------CCcEEEEe-c---CC-cEEEeec--cC-------CccccccceeEEcCCCcEEEEeCCcccccccccccccc
Q 017317          136 --------DKGLLKVT-E---EG-VTVLASH--VN-------GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       136 --------~~gl~~~~-~---~g-~~~l~~~--~~-------~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~  193 (373)
                              ...++++| .   ++ ......-  ..       +.....+++|++|++|++||+++.              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    35588999 6   46 3333221  11       113346899999999999999764              


Q ss_pred             ccCC-ceEEEEeCCCCeEEEeec------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cC--CC
Q 017317          194 AKPH-GKLLKYDPSLNETSILLD------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-EN--LP  263 (373)
Q Consensus       194 ~~~~-g~l~~~d~~~~~~~~~~~------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~--~~  263 (373)
                         . +.|+++++++........      ....++||++.|||+.|++.++ .++|++|++..+.......-. ..  ..
T Consensus       157 ---~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~  232 (334)
T 2p9w_A          157 ---GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTL  232 (334)
T ss_dssp             ---SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCC
T ss_pred             ---CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccc
Confidence               3 689999999665443321      1234789999999999999998 889999998732110011110 10  12


Q ss_pred             CCCCce-eECCCCCE-EEEEec
Q 017317          264 GGPDNI-KLAPDGSF-WIAILQ  283 (373)
Q Consensus       264 g~p~~i-~~d~dG~l-wva~~~  283 (373)
                      ..|++| ....+|++ +|+...
T Consensus       233 ~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          233 SGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             TTEEEEEEEEETTEEEEEEEET
T ss_pred             cCcccccccccCCEEEEEEcCC
Confidence            357885 66778987 666543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=5.8e-14  Score=128.72  Aligned_cols=234  Identities=9%  Similarity=0.006  Sum_probs=158.2

Q ss_pred             CCcceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEE-CCCcEEEEe-cCC-cE-EE
Q 017317           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG-VT-VL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~-~~~gl~~~~-~~g-~~-~l  150 (373)
                      ..|++++++ ++++|++. .++.|.++| .+++..........|. +++++++|+|||++ ....|..+| .++ +. .+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i  121 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI  121 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence            347889987 68999776 468899999 4566533223457789 99998889999998 556789999 566 33 23


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~  230 (373)
                      ...........|.+|++ .++++|+++.+                ..+.|.++|+++++..........|+++++++||+
T Consensus       122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~  184 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK  184 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE
T ss_pred             EcCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC
Confidence            21111112236788888 57899999742                13689999999888765555556799999999997


Q ss_pred             EEEEEeCCC----------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHH
Q 017317          231 YLVVCETFK----------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATK  299 (373)
Q Consensus       231 ~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~  299 (373)
                       +|++....          +.|++++....+..  ..+.-.....|.+++++++|+ +|++.. .               
T Consensus       185 -l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--~~~~~~~g~~p~~la~~~d~~~lyv~~~-~---------------  245 (328)
T 3dsm_A          185 -MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--KQFKFKLGDWPSEVQLNGTRDTLYWINN-D---------------  245 (328)
T ss_dssp             -EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE--EEEECCTTCCCEEEEECTTSCEEEEESS-S---------------
T ss_pred             -EEEEECCCccCCccccCCceEEEEECCCCeEE--EEEecCCCCCceeEEEecCCCEEEEEcc-E---------------
Confidence             88888765          78999996543211  122111123699999999775 777653 2               


Q ss_pred             HHHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceecceeEEEEe--CCEEEEee----CCCCeEEEeeCC
Q 017317          300 HLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGS----LNTNFIGKLPLK  371 (373)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs----~~~~~i~~~~l~  371 (373)
                                           +..+|.+ ++....-..+.+  ...+..+..+  +++||+++    ..++.|.++++.
T Consensus       246 ---------------------v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          246 ---------------------IWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             ---------------------EEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ---------------------EEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence                                 5677754 343210000111  2356777664  57999999    778889999876

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.66  E-value=3.7e-14  Score=143.70  Aligned_cols=228  Identities=14%  Similarity=0.130  Sum_probs=161.4

Q ss_pred             EEEecCCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECC-CCcEEEEECCC-cEEEEecCC------cEEEee
Q 017317           82 VCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG------VTVLAS  152 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g------~~~l~~  152 (373)
                      .++++...|++... ..|.+++.++ ..+.+......+. +|+++. +++||+++... .|++++.+|      .+.+..
T Consensus       390 ~~~~~~p~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          390 KAVGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EETTSCCEEEEECB-SSEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             eecccccccccccc-cceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            34444455666554 4578887443 4455555567788 999986 67899998764 477777332      222221


Q ss_pred             ccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCC
Q 017317          153 HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDED  230 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~  230 (373)
                          ..+..|.+|++|..+ +||++|..                 .++|++++.++...+.+. ..+..|.+|++++.+.
T Consensus       468 ----~~l~~P~GLAvD~~~~~LY~tD~~-----------------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g  526 (791)
T 3m0c_C          468 ----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  526 (791)
T ss_dssp             ----SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             ----cCCCCcceeeeeecCCcEEEEecC-----------------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC
Confidence                235678999999765 89999975                 478999999876665554 5678899999999988


Q ss_pred             EEEEEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          231 YLVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       231 ~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      .|||++.+. .+|.+++++|..   ...+.......|.+|++| .+|+||++....                        
T Consensus       527 ~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~------------------------  579 (791)
T 3m0c_C          527 FMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL------------------------  579 (791)
T ss_dssp             EEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTT------------------------
T ss_pred             CEEEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCCC------------------------
Confidence            899999876 899999988743   223333333579999999 567899998653                        


Q ss_pred             hhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeC
Q 017317          309 IKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l  370 (373)
                                ..|.+++.+|+....+....+. +..+.++...+++||+.....+.|.+++.
T Consensus       580 ----------~~I~~~d~dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          580 ----------HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             ----------TEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----------CcEEEEecCCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence                      2478888888765555332222 44566777778899999999999999874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.65  E-value=6.7e-15  Score=150.06  Aligned_cols=229  Identities=12%  Similarity=0.121  Sum_probs=145.8

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEcC-C---ceEEeeee-------cCccccCeEECCCCcEEEEECCCcEEEEe-cCC
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHKN-G---TWENWKLI-------GGDTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~~-g---~~~~~~~~-------~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g  146 (373)
                      -.+++.|++|+||+|+. +++++++.. +   +++.+...       ..... +|+.|++|+||+++. .||.+++ .++
T Consensus       326 v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~-~GL~~~~~~~~  402 (758)
T 3ott_A          326 FYSLFRDSKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR-HIYEDKEQQLWIATD-GSINRYDYATR  402 (758)
T ss_dssp             EEEEEECTTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE-EEEECTTSCEEEEET-TEEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceE-EEEECCCCCEEEEeC-CcHhhcCcCCC
Confidence            35688899999999995 579988733 2   23333210       12345 788899999999985 6999999 566


Q ss_pred             -cEEEeecc-CC-ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC------CeEE---Ee-
Q 017317          147 -VTVLASHV-NG-SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL------NETS---IL-  213 (373)
Q Consensus       147 -~~~l~~~~-~~-~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~------~~~~---~~-  213 (373)
                       .+.+.... .+ .....+.+|..|++|+||+++..                  ++|+++|+++      +.+.   .+ 
T Consensus       403 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~  464 (758)
T 3ott_A          403 QFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCL------------------GGIFVVDKHKLMQSTSGQYIAEQNYS  464 (758)
T ss_dssp             EEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESS------------------SCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred             cEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECC------------------CceEEEccccccccCCcceecccccc
Confidence             55543211 11 12345678999999999999753                  5799998653      1221   11 


Q ss_pred             -ecCCC--CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCC--CCCCceeECCCCCEEEEEecCCCc
Q 017317          214 -LDSLF--FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLP--GGPDNIKLAPDGSFWIAILQLSSP  287 (373)
Q Consensus       214 -~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~--g~p~~i~~d~dG~lwva~~~~~~~  287 (373)
                       ..++.  ....+..+++|+ +|+......+|++|+...   ..+..+.. .+.  ..+..+..|++|+||+++..+   
T Consensus       465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~---~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G---  537 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRT---REVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG---  537 (758)
T ss_dssp             GGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTT---TEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE---
T ss_pred             cccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCC---CceEEecCCCcCCCcccceEEECCCCCEEEEecCc---
Confidence             11222  234577788887 888333346899998543   23333321 111  235568899999999998654   


Q ss_pred             hhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEE
Q 017317          288 GLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGK  367 (373)
Q Consensus       288 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~  367 (373)
                                                       +.+++++.+.+..+. .++...+.+.++.+++|+||+++..+  |.+
T Consensus       538 ---------------------------------l~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t~~G--l~~  581 (758)
T 3ott_A          538 ---------------------------------VMRINPKDESQQSIS-FGSFSNNEILSMTCVKNSIWVSTTNG--LWI  581 (758)
T ss_dssp             ---------------------------------EEEECC--CCCCBCC-CCC---CCEEEEEEETTEEEEEESSC--EEE
T ss_pred             ---------------------------------eEEEecCCCceEEec-ccCCCccceEEEEECCCCEEEECCCC--eEE
Confidence                                             788887766555553 24554556777777788999999544  888


Q ss_pred             eeCC
Q 017317          368 LPLK  371 (373)
Q Consensus       368 ~~l~  371 (373)
                      +++.
T Consensus       582 ~~~~  585 (758)
T 3ott_A          582 IDRK  585 (758)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            8765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=3.1e-14  Score=134.62  Aligned_cols=185  Identities=17%  Similarity=0.241  Sum_probs=129.0

Q ss_pred             cCCcceEEEecCCC-EEEEecCC--eEEEEEcCCce--EEe----eeecCccccCeEECC-CCcEEEEECCCcEEEEe-c
Q 017317           76 LNGPEDVCVDRNGV-LYTATRDG--WIKRLHKNGTW--ENW----KLIGGDTLLGITTTQ-ENEILVCDADKGLLKVT-E  144 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~~~g--~I~~~~~~g~~--~~~----~~~~~~p~~gl~~d~-~g~L~va~~~~gl~~~~-~  144 (373)
                      ...|. ++++++|+ ||+++.++  .|++++.++..  ..+    ......|. ++++++ +|.||+++..+.|++++ .
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECC
Confidence            35577 99999775 67777544  89999954432  232    11346788 999998 78999988756699999 4


Q ss_pred             CC-cEEEeec-cCCccccccc-eeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-C---
Q 017317          145 EG-VTVLASH-VNGSRINLAD-DLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-S---  216 (373)
Q Consensus       145 ~g-~~~l~~~-~~~~~~~~~~-~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~---  216 (373)
                      ++ ...+... ..+.....|. +|++++ +|+||+++..                 +++|++++.++. ...+.. .   
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~~~g~-~~~~~g~~~~~  310 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKITPDGE-CEWFCGSATQK  310 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEECTTCC-EEEEEECTTCC
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEecCCC-EEEEEeCCCCC
Confidence            55 4444221 1111112244 999999 5899999864                 478999998754 443332 1   


Q ss_pred             -----------CCCcceEEEccCCCEEEEEeC-CCCeEEEEEecCCCCcceeEEecC--------------CCCCCCcee
Q 017317          217 -----------LFFANGVALSKDEDYLVVCET-FKFRCLKYWLKGESKEQTEIFVEN--------------LPGGPDNIK  270 (373)
Q Consensus       217 -----------~~~~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~--------------~~g~p~~i~  270 (373)
                                 +..|+|++++++|+ |||+++ .+++|.+++.....   ...+...              ....|.+++
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence                       56799999999998 999999 99999999953322   2222211              023699999


Q ss_pred             ECCCCCEEEEEecC
Q 017317          271 LAPDGSFWIAILQL  284 (373)
Q Consensus       271 ~d~dG~lwva~~~~  284 (373)
                      +|++|+|||+....
T Consensus       387 vd~~g~lyVad~~n  400 (409)
T 3hrp_A          387 YDGEGGYWIAEAWG  400 (409)
T ss_dssp             ECSSSEEEEEESTT
T ss_pred             EcCCCCEEEEECCC
Confidence            99999999998764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.64  E-value=2.4e-13  Score=123.86  Aligned_cols=217  Identities=15%  Similarity=0.171  Sum_probs=146.2

Q ss_pred             EEEecCCCEEEEecCCeEEEEEcCCceEEeeeec-CccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCccc
Q 017317           82 VCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG-GDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRI  159 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~  159 (373)
                      .++. +|.||+++.+++|++++.+|+........ .... .++.+++|++|+++...+++.++.+| ...... ..   .
T Consensus       103 ~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~-~~---~  176 (330)
T 3hxj_A          103 FTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYA-TPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFK-TN---D  176 (330)
T ss_dssp             EEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTSCEEEECTTSEEEEECTTSCEEEEEE-CS---S
T ss_pred             ceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceee-eeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEe-cC---C
Confidence            3444 89999999999999999666543222222 2234 78888899999998778899999447 332222 11   2


Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  239 (373)
                      .....++++++|.||+++                    ++|+++|.++...............++++++|. +|++.. +
T Consensus       177 ~~~~~~~~d~~g~l~v~t--------------------~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-~  234 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS--------------------DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-D  234 (330)
T ss_dssp             CCCSCCEECTTCCEEEES--------------------SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEET-T
T ss_pred             CceeeeEEcCCCEEEEEe--------------------CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcC-C
Confidence            345678899999999984                    479999954333323322334466788888886 888864 5


Q ss_pred             CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccE
Q 017317          240 FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKA  319 (373)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g  319 (373)
                      +++++|+.++.   ....+. .....+..+.+|.+|+||+++..+                                   
T Consensus       235 ~gl~~~~~~g~---~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~g-----------------------------------  275 (330)
T 3hxj_A          235 GHLYAINPDGT---EKWRFK-TGKRIESSPVIGNTDTIYFGSYDG-----------------------------------  275 (330)
T ss_dssp             TEEEEECTTSC---EEEEEE-CSSCCCSCCEECTTSCEEEECTTC-----------------------------------
T ss_pred             CeEEEECCCCC---EeEEee-CCCCccccceEcCCCeEEEecCCC-----------------------------------
Confidence            68999974332   222222 222345668889999999998764                                   


Q ss_pred             EEEEECCCCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEEeeC
Q 017317          320 AVVNVAANGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       320 ~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~~~l  370 (373)
                      .++++|++|+.+..+..+.    ..+..+.. .+|+||+|+..+- +...+.
T Consensus       276 gl~~~d~~g~~~~~~~~~~----~~~~~~~~d~~g~l~~gt~~G~-~~~~~~  322 (330)
T 3hxj_A          276 HLYAINPDGTEKWNFETGS----WIIATPVIDENGTIYFGTRNGK-FYALFN  322 (330)
T ss_dssp             EEEEECTTSCEEEEEECSS----CCCSCCEECTTCCEEEECTTSC-EEEEEC
T ss_pred             CEEEECCCCcEEEEEEcCC----ccccceEEcCCCEEEEEcCCCe-EEEEec
Confidence            4899999999888776543    23445555 5789999998663 544443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.64  E-value=1e-14  Score=133.34  Aligned_cols=179  Identities=15%  Similarity=0.130  Sum_probs=126.2

Q ss_pred             CCcceEEEec-CCCEEEEecCCeEEEEEcC-CceEEeeee-----cCccccCeEECC-CCcEEEEECC------------
Q 017317           77 NGPEDVCVDR-NGVLYTATRDGWIKRLHKN-GTWENWKLI-----GGDTLLGITTTQ-ENEILVCDAD------------  136 (373)
Q Consensus        77 ~~P~~ia~d~-~G~l~v~~~~g~I~~~~~~-g~~~~~~~~-----~~~p~~gl~~d~-~g~L~va~~~------------  136 (373)
                      ..|.+|++++ +|+||+++..++|++++.+ ++.+.+...     ...|. ++++++ +|+|||++..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            4689999997 8999999877789999965 444444321     24578 999999 9999999854            


Q ss_pred             ------CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317          137 ------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       137 ------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                            .++++++ .++ .+.+..     .+..+++|+++++|+ |||++..                 .++|++|+.++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~-----------------~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFL-----------------SHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGG-----------------GTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCC-----------------CCeEEEEECCC
Confidence                  3588888 456 554432     235789999999985 9999864                 46899999774


Q ss_pred             ---CeEEEeecCCCCcceEEEccCCCEEEEEeCC----------CCeEEEEEecCCCCcceeEEecCC---CCCCCceeE
Q 017317          208 ---NETSILLDSLFFANGVALSKDEDYLVVCETF----------KFRCLKYWLKGESKEQTEIFVENL---PGGPDNIKL  271 (373)
Q Consensus       208 ---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~---~g~p~~i~~  271 (373)
                         +..+.+.. ...|.|++++++|+ +|+++..          .++|.+|+.++..   ...+....   ...|.+++.
T Consensus       217 ~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~---~~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          217 PKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNI---LEVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             TTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCE---EEEEECCTTTTTSCCCEEEE
T ss_pred             CcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCE---EEEEECCCCCccccceEEEE
Confidence               23444333 22399999999998 9999865          4678999865432   22232111   234666666


Q ss_pred             CCCCCEEEEEecC
Q 017317          272 APDGSFWIAILQL  284 (373)
Q Consensus       272 d~dG~lwva~~~~  284 (373)
                       .+|+|||++...
T Consensus       292 -~~g~L~v~~~~~  303 (322)
T 2fp8_A          292 -HDGLLYIGTLFH  303 (322)
T ss_dssp             -ETTEEEEECSSC
T ss_pred             -eCCEEEEeecCC
Confidence             578999997643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.64  E-value=1.7e-14  Score=143.04  Aligned_cols=185  Identities=17%  Similarity=0.156  Sum_probs=133.9

Q ss_pred             CcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc--eEE-eeeecCccccCeEECC-CCcEEEEECCCc-EEEEecCC-
Q 017317           75 ILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT--WEN-WKLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVTEEG-  146 (373)
Q Consensus        75 ~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~--~~~-~~~~~~~p~~gl~~d~-~g~L~va~~~~g-l~~~~~~g-  146 (373)
                      .+..|.+|++++ +|.||+++ .+++|.+++.+|.  .+. +......|. ||++|. .++||+++...+ |.+++.+| 
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            378899999997 88899766 6789999997775  233 333346899 999997 568999987654 55566566 


Q ss_pred             -cEEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceE
Q 017317          147 -VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGV  223 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi  223 (373)
                       .+.+..    ..+..|++|++||. |.||++|.+                ..++|++.++++...+.+. ..+..|+|+
T Consensus       117 ~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          117 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             SCEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             CEEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence             455543    23567999999985 799999864                2468999999866555444 578899999


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +++++++.|||++...++|.+++++|...   +.+.......|.+++++.+ ++|++.+..
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~gi~~~~~-~ly~td~~~  233 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHPFALTLFED-ILYWTDWST  233 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCCEE---C---------CCCEEESSS-EEEEECTTT
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCCcc---EEEEeCCCCCceEEEEeCC-EEEEecCCC
Confidence            99998888999999999999999887422   2222222357999999877 899998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.64  E-value=2.6e-13  Score=124.78  Aligned_cols=241  Identities=16%  Similarity=0.208  Sum_probs=152.9

Q ss_pred             cCCcceEEEecCCCEEEEec---CCeEEEEE-cCCceEEee---eecCccccCeEECCCCc-EEEEECCCc-EEEEe--c
Q 017317           76 LNGPEDVCVDRNGVLYTATR---DGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENE-ILVCDADKG-LLKVT--E  144 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~---~g~I~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~-L~va~~~~g-l~~~~--~  144 (373)
                      ...|..++++++|+||+.+.   ++.|..++ .+|+.+.+.   .....|. +++++++|+ ||++....+ +..++  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            47799999999999997664   57898888 455544332   2456788 999999997 888874433 55565  3


Q ss_pred             CC-cEEEeec-cCCc------cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC-CCeEEEe--
Q 017317          145 EG-VTVLASH-VNGS------RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSIL--  213 (373)
Q Consensus       145 ~g-~~~l~~~-~~~~------~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~--  213 (373)
                      +| .+.+... ..+.      ....+..++++|||++|+++..                 .+.|+.++.+ +++....  
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeee
Confidence            55 4443321 1111      1224678999999999888753                 3567666655 4544432  


Q ss_pred             --ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecCCC------CCCCceeECCCCC-EEEEEe
Q 017317          214 --LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLP------GGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       214 --~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~------g~p~~i~~d~dG~-lwva~~  282 (373)
                        ......|.+++|+|||+++|+++...+.+..|+++..  ......... ..+      ..|.++++++||+ ||++..
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence              1223467889999999999999988889998887642  111111111 111      2366699999997 677765


Q ss_pred             cCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcE--EEEEeCCCCceecceeEEEEe-C-CEEEEe
Q 017317          283 QLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIV--IRKFEDPNGKVMSFVTSALEF-D-DHLYLG  358 (373)
Q Consensus       283 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~--~~~~~~~~g~~~~~~~~~~~~-~-g~L~vg  358 (373)
                      ...                                ...++.++.+|+.  +..+... +   ..+..+..+ + ..||++
T Consensus       260 ~~~--------------------------------~v~v~~~~~~g~~~~~~~~~~~-~---~~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          260 GYN--------------------------------TLAVFAVTADGHLTLIQQISTE-G---DFPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             TTT--------------------------------EEEEEEECGGGCEEEEEEEECS-S---SCCCEEEECTTSSEEEEE
T ss_pred             CCC--------------------------------EEEEEEECCCCcEEEeEEEecC-C---CCcCeEEECCCCCEEEEE
Confidence            321                                1124444445533  3333321 1   235666665 3 469999


Q ss_pred             eCCCCeEEEeeCC
Q 017317          359 SLNTNFIGKLPLK  371 (373)
Q Consensus       359 s~~~~~i~~~~l~  371 (373)
                      +..++.|..++++
T Consensus       304 ~~~~~~v~v~~~d  316 (347)
T 3hfq_A          304 NQNTDNATLYARD  316 (347)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             EcCCCcEEEEEEe
Confidence            9888888888654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.64  E-value=9e-14  Score=137.85  Aligned_cols=184  Identities=16%  Similarity=0.135  Sum_probs=139.0

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-eEEee-eecCccccCeEECC-CCcEEEEECCCc-EEEEecCC--c
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADKG-LLKVTEEG--V  147 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~L~va~~~~g-l~~~~~~g--~  147 (373)
                      +..|.+|++|+ +|.||+++ ..++|++++.+|. .+.+. .....|. ||++|. .++||+++...+ |.+.+.+|  .
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~  426 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGTMR  426 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCCeE
Confidence            67789999997 78999766 6789999997773 33333 3346899 999994 678999997655 45555556  4


Q ss_pred             EEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEE
Q 017317          148 TVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVAL  225 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~  225 (373)
                      +.+..    ..+..|++|++||. |.||++|.+                ..++|++.+.++...+.+ ...+..|+|+++
T Consensus       427 ~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~Glal  486 (619)
T 3s94_A          427 KILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNGLAL  486 (619)
T ss_dssp             EEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             EEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCeeeEE
Confidence            45542    24568999999985 899999965                236899999886554444 346889999999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +++++.|||+++..++|.+++++|...   +.+.......|.+++++.+ +||++.+..
T Consensus       487 D~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glav~~~-~ly~tD~~~  541 (619)
T 3s94_A          487 DYDEGKIYWGDAKTDKIEVMNTDGTGR---RVLVEDKIPHIFGFTLLGD-YVYWTDWQR  541 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCC---EEEEECCCCSSCCEEEETT-EEEEECTTS
T ss_pred             cccCCEEEEEECCCCEEEEEecCCCce---EEEeccCCCCcEEEEEECC-EEEEeecCC
Confidence            998888999999999999999887532   2232233457999999755 899998764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.63  E-value=3.8e-14  Score=144.54  Aligned_cols=224  Identities=17%  Similarity=0.223  Sum_probs=146.8

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEc-CCceEEeeee-------cCccccCeEECCCCcEEEEECCCcEEEEe-cC----
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI-------GGDTLLGITTTQENEILVCDADKGLLKVT-EE----  145 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~~~~~~~-------~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~----  145 (373)
                      ..+++.|++|+||+|+ +++|.++++ +++++.+...       ..... .|+.|++|+|||++...||++++ .+    
T Consensus       375 v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            4678899999999999 568999994 5566655321       12245 78889999999999778999998 32    


Q ss_pred             --C-cE--EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-C--
Q 017317          146 --G-VT--VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-L--  217 (373)
Q Consensus       146 --g-~~--~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~--  217 (373)
                        + ..  .......+.+...+.+|..|++|+||++.+.                 .++|+++|+++++++.+... +  
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-----------------~~Gl~~~d~~~~~~~~~~~~~~~~  515 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-----------------NKGIDKINPRTREVTKLFADELTG  515 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-----------------CSSEEEEETTTTEEEEECTTTSCG
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCCEEEEccC-----------------CCCcEEEeCCCCceEEecCCCcCC
Confidence              1 11  1111223333445788999999999992211                 25799999998887765321 1  


Q ss_pred             -CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCC----CceeECCCCCEEEEEecCCCchhhhc
Q 017317          218 -FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP----DNIKLAPDGSFWIAILQLSSPGLEFV  292 (373)
Q Consensus       218 -~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p----~~i~~d~dG~lwva~~~~~~~~~~~~  292 (373)
                       ..++.+..+.+|+ +|++..  +++.+|+........   +.  ..++|    .++..| +|+||+++..+        
T Consensus       516 ~~~~~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~~~---~~--~~gl~~~~i~~i~~~-~g~lWi~t~~G--------  578 (758)
T 3ott_A          516 EKSPNYLLCDEDGL-LWVGFH--GGVMRINPKDESQQS---IS--FGSFSNNEILSMTCV-KNSIWVSTTNG--------  578 (758)
T ss_dssp             GGCEEEEEECTTSC-EEEEET--TEEEEECC--CCCCB---CC--CCC---CCEEEEEEE-TTEEEEEESSC--------
T ss_pred             CcccceEEECCCCC-EEEEec--CceEEEecCCCceEE---ec--ccCCCccceEEEEEC-CCCEEEECCCC--------
Confidence             2345677888887 898863  589999865443322   21  12333    335555 89999999766        


Q ss_pred             cCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEEeeCC
Q 017317          293 HTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                                  +.+++++...+..+..++.. +.  ..+.. .+|+||+|+.++  +.++++.
T Consensus       579 ----------------------------l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~~G--l~~f~p~  625 (758)
T 3ott_A          579 ----------------------------LWIIDRKTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGADG--FGISHSN  625 (758)
T ss_dssp             ----------------------------EEEEETTTCCEEEC--CCCC-CS--EEEEETTTTEEEEECBSE--EEEEEC-
T ss_pred             ----------------------------eEEEcCCCceeEEecCCCCc-ee--eeEEECCCCcEEEecCCc--eEEEChh
Confidence                                        78999887777766544432 22  23333 379999999765  8887764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=2e-13  Score=122.84  Aligned_cols=178  Identities=11%  Similarity=0.182  Sum_probs=127.2

Q ss_pred             cCCcceEEEecCCCEEEEec-CCeEEEEEc-CCceEEeeee-----cCccccCeEECCCCcEEEEEC-------------
Q 017317           76 LNGPEDVCVDRNGVLYTATR-DGWIKRLHK-NGTWENWKLI-----GGDTLLGITTTQENEILVCDA-------------  135 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~-~g~I~~~~~-~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va~~-------------  135 (373)
                      ...|.+++++++|++|+++. +++|.+++. +|+.+.+...     ...+. +++++++|++|+++.             
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccc
Confidence            45689999999999998875 589999995 7877655322     24577 899999999999753             


Q ss_pred             -----CCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC-CC
Q 017317          136 -----DKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LN  208 (373)
Q Consensus       136 -----~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~  208 (373)
                           ..+|++++.+| .+.+..     ....++++++++||++++++..                 .+.|++++.+ ++
T Consensus       147 ~~~~~~~~l~~~~~~g~~~~~~~-----~~~~~~gi~~s~dg~~lv~~~~-----------------~~~i~~~~~~~~g  204 (296)
T 3e5z_A          147 EMELPGRWVFRLAPDGTLSAPIR-----DRVKPNGLAFLPSGNLLVSDTG-----------------DNATHRYCLNARG  204 (296)
T ss_dssp             CCCSSSCEEEEECTTSCEEEEEC-----CCSSEEEEEECTTSCEEEEETT-----------------TTEEEEEEECSSS
T ss_pred             cccCCCcEEEEECCCCCEEEeec-----CCCCCccEEECCCCCEEEEeCC-----------------CCeEEEEEECCCC
Confidence                 24788998547 554432     2346789999999987777653                 4689888865 34


Q ss_pred             eE----EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeE-CCCC-CEEEEEe
Q 017317          209 ET----SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKL-APDG-SFWIAIL  282 (373)
Q Consensus       209 ~~----~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~-d~dG-~lwva~~  282 (373)
                      +.    +.+......|.+++++++|+ +|++.  .++|.+|+.++..   ...+. ...+ |.++++ +++| +||+++.
T Consensus       205 ~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~~---~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          205 ETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGDE---LGRVL-TPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSCE---EEEEE-CSSC-CCEEEEESTTSCEEEEEET
T ss_pred             cCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCCE---EEEEE-CCCC-ceeEEEECCCCCEEEEEcC
Confidence            44    22212345688999999998 99998  6789999865432   22232 2223 888988 4676 4999986


Q ss_pred             cC
Q 017317          283 QL  284 (373)
Q Consensus       283 ~~  284 (373)
                      .+
T Consensus       277 ~~  278 (296)
T 3e5z_A          277 TE  278 (296)
T ss_dssp             TE
T ss_pred             Ce
Confidence            54

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.60  E-value=1.9e-13  Score=135.60  Aligned_cols=185  Identities=15%  Similarity=0.128  Sum_probs=137.5

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCce--EEeee------ecCccccCeEECCC-CcEEEEECCCcEEEE-e
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGTW--ENWKL------IGGDTLLGITTTQE-NEILVCDADKGLLKV-T  143 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~~--~~~~~------~~~~p~~gl~~d~~-g~L~va~~~~gl~~~-~  143 (373)
                      +..+..|++|+ ++.||+.+ .+++|++++.+|..  +.+..      ....|. ||++|.. ++||+++...+.+.+ +
T Consensus       339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~I~v~~  417 (628)
T 4a0p_A          339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNVINVTR  417 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCEEEEEE
Confidence            67788899997 78899665 67899999977743  33322      245799 9999976 579999877655444 4


Q ss_pred             cCC--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCC
Q 017317          144 EEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFF  219 (373)
Q Consensus       144 ~~g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~  219 (373)
                      .+|  .+.+...    .+..|++|+++| +|.||++|.+.               ..++|++.++++...+.+. ..+..
T Consensus       418 ~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g~---------------~~~~I~r~~~dG~~~~~l~~~~l~~  478 (628)
T 4a0p_A          418 LDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQE---------------RSPKIERAALDGTEREVLFFSGLSK  478 (628)
T ss_dssp             TTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEET---------------TEEEEEEEETTSCSCEEEECSSCSC
T ss_pred             CCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecCC---------------CCCeEEEEeCCCCCcEEEEeccCCC
Confidence            567  3444331    345799999998 89999998641               1137999999866555544 46889


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      |+|++++++++.|||++...++|.+++++|..   .+.+.......|.+++++. |+||++.+..
T Consensus       479 P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P~glav~~-~~ly~tD~~~  539 (628)
T 4a0p_A          479 PIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQPVGLTVFE-NWLYWIDKQQ  539 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCEEEEEEET-TEEEEEETTT
T ss_pred             ccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCcEEEEEEC-CEEEEEECCC
Confidence            99999999988899999999999999998753   2334433345799999976 7999998764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.60  E-value=2.7e-13  Score=137.38  Aligned_cols=189  Identities=11%  Similarity=0.081  Sum_probs=135.3

Q ss_pred             EeccCCcCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-----eEEee-eecCccccCeEECCCC-cEEEEECCC-cE
Q 017317           70 RLGEGILNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----WENWK-LIGGDTLLGITTTQEN-EILVCDADK-GL  139 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-----~~~~~-~~~~~p~~gl~~d~~g-~L~va~~~~-gl  139 (373)
                      .+..+ +..|.+|++|. +++||+.+ .+++|++++.+|.     .+.+. .....|. ||++|..+ +||+++... .|
T Consensus       418 ~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          418 SLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             EEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEE
T ss_pred             eeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeE
Confidence            34444 67899999997 78899766 6788999986652     23333 2457899 99999655 899998764 46


Q ss_pred             EEEecCC--cEEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-c
Q 017317          140 LKVTEEG--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-D  215 (373)
Q Consensus       140 ~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~  215 (373)
                      .+++.+|  .+.+..    ..+..|++|++|+. |.||++|.+                ..++|++++.++...+.+. .
T Consensus       496 ~v~~ldG~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          496 SVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             EEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeCCCCeEEEEEe----CCCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeC
Confidence            6666556  444433    23456899999985 799999864                2368999999876655544 5


Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCCEEEEEecC
Q 017317          216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       216 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .+..|+||+++++++.|||++...++|.+++++|....   .+...  ....|.+|+++ +++||++.+..
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~---~v~~~~~~l~~P~glav~-~~~lYwtD~~~  622 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHPFSLAVF-EDKVFWTDIIN  622 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE---EEecCCCccCCCCEEEEe-CCEEEEEECCC
Confidence            67899999999888889999999999999998875322   22222  12356677775 45899998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.59  E-value=1.2e-13  Score=131.24  Aligned_cols=184  Identities=11%  Similarity=0.087  Sum_probs=127.6

Q ss_pred             CcCCcceEEEecCCCEEEEecC-----CeEEEEEcCCceE--EeeeecCccccCeEECC-CCcEEEEECCC-cEEEEec-
Q 017317           75 ILNGPEDVCVDRNGVLYTATRD-----GWIKRLHKNGTWE--NWKLIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTE-  144 (373)
Q Consensus        75 ~~~~P~~ia~d~~G~l~v~~~~-----g~I~~~~~~g~~~--~~~~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~-  144 (373)
                      .+..|.+|++|++|+||+++..     ..++.++.++.+.  ........|. ++++++ +|+|||++... .|++++. 
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~-giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAK-TCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBC-CCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCC-EEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            4678999999999999988753     2467776544332  1222467899 999998 89999998654 4888984 


Q ss_pred             CC-c-EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC--CCeE---EEeec-
Q 017317          145 EG-V-TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LNET---SILLD-  215 (373)
Q Consensus       145 ~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~~~---~~~~~-  215 (373)
                      +| . +.+... ..  ...+..|+++++|+ |||++..                 +.+|++++.+  ++..   ..+.. 
T Consensus       259 ~g~~~~~~~~~-~~--~~~~~~ia~dpdG~~LYvad~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag~  318 (433)
T 4hw6_A          259 TGTLTEEEVMM-DT--KGSNFHIVWHPTGDWAYIIYNG-----------------KHCIYRVDYNRETGKLAVPYIVCGQ  318 (433)
T ss_dssp             TCCEEEEEEEC-SC--CSSCEEEEECTTSSEEEEEETT-----------------TTEEEEEEBCTTTCCBCCCEEEEEC
T ss_pred             CCeEEEEEecc-CC--CCCcccEEEeCCCCEEEEEeCC-----------------CCEEEEEeCCCCCcccCcEEEEEec
Confidence            57 5 444321 11  12345799999997 9999864                 4688887754  3322   12221 


Q ss_pred             --------------CCCCcceEEE---------ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-----------
Q 017317          216 --------------SLFFANGVAL---------SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-----------  261 (373)
Q Consensus       216 --------------~~~~~~gi~~---------~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------  261 (373)
                                    .+..|.|+++         +.+|+ |||+++.+++|.+++.+|    ....+...           
T Consensus       319 ~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G----~v~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          319 HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEG----RVTTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTS----EEEEEECCCTTCSSCCBCE
T ss_pred             CCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCC----CEEEEEeCCCCCccccCCC
Confidence                          2567899999         77775 999999999999998544    22222211           


Q ss_pred             ------CCCCCCceeEC-CCCCEEEEEecC
Q 017317          262 ------LPGGPDNIKLA-PDGSFWIAILQL  284 (373)
Q Consensus       262 ------~~g~p~~i~~d-~dG~lwva~~~~  284 (373)
                            ....|.++++| ++|+|||+....
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence                  11358899999 899999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=1.4e-13  Score=124.49  Aligned_cols=179  Identities=15%  Similarity=0.169  Sum_probs=128.9

Q ss_pred             CCcceEEEecC-CCEEEEecCCeEEEEEcCCceEEe-eee-----cCccccCeEECCCCcEEEEECC-------------
Q 017317           77 NGPEDVCVDRN-GVLYTATRDGWIKRLHKNGTWENW-KLI-----GGDTLLGITTTQENEILVCDAD-------------  136 (373)
Q Consensus        77 ~~P~~ia~d~~-G~l~v~~~~g~I~~~~~~g~~~~~-~~~-----~~~p~~gl~~d~~g~L~va~~~-------------  136 (373)
                      ..|.+++++++ |+||+++..++|++++.+|+.+.+ ...     ...+. +++++++|++|+++..             
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCc-CEEECCCCCEEEEecCccccccccccccc
Confidence            56899999998 999999877799999966877655 321     13477 9999999999999764             


Q ss_pred             ---CcEEEEecCC-cEEEeeccCCccccccceeEEc----CCC-cEEEEeCCccccccccccccccccCCceEEEEeCC-
Q 017317          137 ---KGLLKVTEEG-VTVLASHVNGSRINLADDLIAA----TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-  206 (373)
Q Consensus       137 ---~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~----~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-  206 (373)
                         .++++++.++ .+.+...     ...+++++++    ++| .+|+++..                 .++|+++|.+ 
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~-----------------~~~i~~~~~~~  207 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAETP-----------------TKKLWSYDIKG  207 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEETT-----------------TTEEEEEEEEE
T ss_pred             CCCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEECC-----------------CCeEEEEECCC
Confidence               3688888447 5444321     2356789999    999 69999753                 3689999864 


Q ss_pred             CCeEE---Eee--cC-C-CCcceEEEccCCCEEEEEeCCCCeEEEEEec-CCCCcceeEEecCCCCCCCceeECCCCC-E
Q 017317          207 LNETS---ILL--DS-L-FFANGVALSKDEDYLVVCETFKFRCLKYWLK-GESKEQTEIFVENLPGGPDNIKLAPDGS-F  277 (373)
Q Consensus       207 ~~~~~---~~~--~~-~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~g~p~~i~~d~dG~-l  277 (373)
                      +++..   .+.  .. . ..|.+++++++|+ +|+++...++|.+|+.+ +...   ..+. .....|.+++++++|+ |
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~---~~~~-~~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK---MRIR-CPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS---EEEE-CSSSCEEEEEECTTSSEE
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe---EEEe-CCCCCceeEEECCCCCEE
Confidence            34321   111  11 1 5689999999997 99998778899999865 3221   1222 1125688899999998 9


Q ss_pred             EEEEec
Q 017317          278 WIAILQ  283 (373)
Q Consensus       278 wva~~~  283 (373)
                      |+++..
T Consensus       283 ~v~~~~  288 (314)
T 1pjx_A          283 FVTEHE  288 (314)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999865

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.59  E-value=6.1e-13  Score=127.05  Aligned_cols=171  Identities=15%  Similarity=0.145  Sum_probs=119.8

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEecCC-eEEEEEc-CCceEEeeee---------cCccccCeEECC----CCcEE
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATRDG-WIKRLHK-NGTWENWKLI---------GGDTLLGITTTQ----ENEIL  131 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g-~I~~~~~-~g~~~~~~~~---------~~~p~~gl~~d~----~g~L~  131 (373)
                      +++.++++ +..|++|+++++|+|||+...| +|++++. +|+.+.+...         .+.++ ||++++    ++.||
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEEE
Confidence            56777776 8999999999999999999775 7999984 5765544321         23467 999998    78899


Q ss_pred             EEECC-------------CcEEEEe-cC--C----cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccc--
Q 017317          132 VCDAD-------------KGLLKVT-EE--G----VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGL--  189 (373)
Q Consensus       132 va~~~-------------~gl~~~~-~~--g----~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~--  189 (373)
                      |+...             ..|++++ ..  +    .+.+....+....+....|++++||.|||+.........+..+  
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            98642             3688887 32  2    2344443343445778999999999999997542111000000  


Q ss_pred             -------------ccccccCCceEEEEeCCCC-----------eEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          190 -------------DLLEAKPHGKLLKYDPSLN-----------ETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       190 -------------~~~~~~~~g~l~~~d~~~~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                                   ........|.|+|+++++.           ..+.+..++.+|.|++|+++|+ ||+++.+.+
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~  249 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence                         0001123589999999865           4567788999999999999877 999997654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.58  E-value=9.9e-15  Score=146.90  Aligned_cols=184  Identities=11%  Similarity=0.086  Sum_probs=131.3

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCC-----ceEEee-eecCccccCeEEC-CCCcEEEEECC-CcEEEEecC
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNG-----TWENWK-LIGGDTLLGITTT-QENEILVCDAD-KGLLKVTEE  145 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g-----~~~~~~-~~~~~p~~gl~~d-~~g~L~va~~~-~gl~~~~~~  145 (373)
                      +..|.+|++++ ++.||+.+ .+++|++++.++     ..+.+. .....|. ||++| ..++||+++.. +.|.+++.+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            57899999997 78899766 568999999665     222222 2235789 99999 56789999765 457777755


Q ss_pred             C--cEEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcc
Q 017317          146 G--VTVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFAN  221 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~  221 (373)
                      |  .+.+..    ..+..|++|++|++ |.||+++..                ..++|++++.++...+.+ ...+..|+
T Consensus       484 g~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          484 GVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            5  444432    22456899999985 689999854                236899998875544433 35688999


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec--CCCCCCCceeECCCCCEEEEEecC
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ||+++++++.|||+++..++|.+++++|..   ...+..  .....|.+|++|.+ +||++.+..
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lywtd~~~  604 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDIIN  604 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence            999999988899999999999999987632   223332  12357999999876 677777653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.56  E-value=5.5e-13  Score=121.43  Aligned_cols=218  Identities=14%  Similarity=0.185  Sum_probs=141.4

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCcc
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSR  158 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~  158 (373)
                      .+++++++|.||+++.+  |++++++|+................+. +|.||++....++++++..| ...... ..   
T Consensus        63 ~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~-~~---  135 (330)
T 3hxj_A           63 CRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFK-TK---  135 (330)
T ss_dssp             ECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEE-CS---
T ss_pred             cceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEc-CC---
Confidence            45678889999998866  999987664321111111111144454 78999998777899999447 332222 11   


Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEeC
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      ......++++++|.+|+++..                  ++|+++|++ ++.. ...........+.+++++. +|++. 
T Consensus       136 ~~~~~~~~~~~~g~l~vgt~~------------------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t-  194 (330)
T 3hxj_A          136 KAIYATPIVSEDGTIYVGSND------------------NYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS-  194 (330)
T ss_dssp             SCCCSCCEECTTSCEEEECTT------------------SEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES-
T ss_pred             CceeeeeEEcCCCEEEEEcCC------------------CEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe-
Confidence            123456788999999998643                  789999998 5443 2322233445677888887 88886 


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCc
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK  317 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  317 (373)
                        +++++++.++.   ....+. ........+++|++|++|+++..+                                 
T Consensus       195 --~~l~~~d~~g~---~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~~---------------------------------  235 (330)
T 3hxj_A          195 --DKVYAINPDGT---EKWNFY-AGYWTVTRPAISEDGTIYVTSLDG---------------------------------  235 (330)
T ss_dssp             --SSEEEECTTSC---EEEEEC-CSSCCCSCCEECTTSCEEEEETTT---------------------------------
T ss_pred             --CEEEEECCCCc---EEEEEc-cCCcceeceEECCCCeEEEEcCCC---------------------------------
Confidence              67999983332   111111 112346778899999999998754                                 


Q ss_pred             cEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          318 KAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       318 ~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                        .+++++++|+.+..+....+.    ...+..+ +++||+++.. ..|.+++..
T Consensus       236 --gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~~-ggl~~~d~~  283 (330)
T 3hxj_A          236 --HLYAINPDGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSYD-GHLYAINPD  283 (330)
T ss_dssp             --EEEEECTTSCEEEEEECSSCC----CSCCEECTTSCEEEECTT-CEEEEECTT
T ss_pred             --eEEEECCCCCEeEEeeCCCCc----cccceEcCCCeEEEecCC-CCEEEECCC
Confidence              478899999998877654332    2334444 7899999974 368888753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=3.2e-13  Score=128.39  Aligned_cols=183  Identities=13%  Similarity=0.152  Sum_probs=125.9

Q ss_pred             cCCcceEEEecCCC-EEEEecC-----CeEEEEEcCCceE--EeeeecCccccCeEECC-CCcEEEEECC-CcEEEEecC
Q 017317           76 LNGPEDVCVDRNGV-LYTATRD-----GWIKRLHKNGTWE--NWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEE  145 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~~~-----g~I~~~~~~g~~~--~~~~~~~~p~~gl~~d~-~g~L~va~~~-~gl~~~~~~  145 (373)
                      +..|.+|++|++|+ ||+++..     ..++.++.+|.+.  ........|. ++++++ +|.||+++.. +.|++++.+
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~-giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN-GAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC-CEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce-EEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            67899999999888 9988752     2567777766543  2222357799 999999 8899999865 458888844


Q ss_pred             -C-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC--CeE---EEeec--
Q 017317          146 -G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NET---SILLD--  215 (373)
Q Consensus       146 -g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--~~~---~~~~~--  215 (373)
                       + ...+... .  ....|++|+++++|+ ||+++..                 ..+|++++.+.  +++   ..+..  
T Consensus       257 ~~~~~~~~~~-~--~~~~P~gia~~pdG~~lyv~d~~-----------------~~~I~~~~~d~~~~~~~~~~~~ag~~  316 (430)
T 3tc9_A          257 TQETTPLFTI-Q--DSGWEFHIQFHPSGNYAYIVVVN-----------------QHYILRSDYDWKTKRLTTPYIVCGQQ  316 (430)
T ss_dssp             TTEEEEEEEC-S--SSSCCEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEECCCEEEEECT
T ss_pred             CCcEEEEEEc-C--CCCcceeEEEcCCCCEEEEEECC-----------------CCEEEEEeCCcccccccceEEEeccC
Confidence             4 4333221 1  124688999999997 9999864                 46888876552  222   12221  


Q ss_pred             -------------CCCCcc-eEEEc--------cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC------------
Q 017317          216 -------------SLFFAN-GVALS--------KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN------------  261 (373)
Q Consensus       216 -------------~~~~~~-gi~~~--------~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~------------  261 (373)
                                   .+..|. |++++        ++|+ |||+++.+++|.+++.+|    ....+...            
T Consensus       317 g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~~G----~v~~~~g~g~~~~~G~~dG~  391 (430)
T 3tc9_A          317 GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQG----RVTTFAGRGSNGTSGYNDGD  391 (430)
T ss_dssp             TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECTTS----EEEEEEECCTTSSSSCBCEE
T ss_pred             CCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECCCC----cEEEEEeCCCCCCCcccCCC
Confidence                         255677 88885        4454 999999999999998443    22222211            


Q ss_pred             -----CCCCCCceeECC-CCCEEEEEecC
Q 017317          262 -----LPGGPDNIKLAP-DGSFWIAILQL  284 (373)
Q Consensus       262 -----~~g~p~~i~~d~-dG~lwva~~~~  284 (373)
                           ....|.++++|+ +|+|||+....
T Consensus       392 ~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          392 LRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             TTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             chhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence                 012699999998 68999998764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.56  E-value=3.4e-13  Score=122.14  Aligned_cols=181  Identities=11%  Similarity=0.085  Sum_probs=127.2

Q ss_pred             CCcceEEEecCCCEEEEec-CCeEEEEEcCCceEEeeee-----cCccccCeEECCCCcEEEEEC---------------
Q 017317           77 NGPEDVCVDRNGVLYTATR-DGWIKRLHKNGTWENWKLI-----GGDTLLGITTTQENEILVCDA---------------  135 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~-~g~I~~~~~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va~~---------------  135 (373)
                      ..|.++++|++|+||+++. +++|.+++.+|+++.+...     ...|. +++++++|++|+++.               
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~~~  164 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPADP  164 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCcccccccccccc
Confidence            5688999999999999875 4789999987887665432     24577 899999999999752               


Q ss_pred             ---CCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCe
Q 017317          136 ---DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (373)
Q Consensus       136 ---~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  209 (373)
                         ..+|++++ .+| .+.+.      ....++++++++||+ ||+++....            ....+.|++++.+++.
T Consensus       165 ~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~------------~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          165 ELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQ------------GHGSVEITAFAWRDGA  226 (305)
T ss_dssp             SSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETTE
T ss_pred             ccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCc------------CCCCCEEEEEEecCCC
Confidence               24689999 467 66553      234688999999996 999975310            0012578888865443


Q ss_pred             E---EEee-cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecC
Q 017317          210 T---SILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQL  284 (373)
Q Consensus       210 ~---~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~  284 (373)
                      .   +.+. .....|.|++++++|+ +|++.  .++|++|+.++...   ..+.  .+..+.+++++++| +||+++..+
T Consensus       227 l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~~---~~~~--~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          227 LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQLL---GHIP--TPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCEE---EEEE--CSSCCCEEEECTTSCEEEEEETTE
T ss_pred             ccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCEE---EEEE--CCCceeEEEEeCCCCEEEEEcCCe
Confidence            2   1221 1245689999999998 99886  45799998655322   2222  23358899998877 599998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.55  E-value=8.9e-12  Score=113.41  Aligned_cols=239  Identities=9%  Similarity=0.055  Sum_probs=150.9

Q ss_pred             cCCcceEEEecCCC-EEEEec-CCeEEEEE-cCCce-EEeeeecCccccC-eEECCCCcEEEEECCC----cEEEEe-cC
Q 017317           76 LNGPEDVCVDRNGV-LYTATR-DGWIKRLH-KNGTW-ENWKLIGGDTLLG-ITTTQENEILVCDADK----GLLKVT-EE  145 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~~-~g~I~~~~-~~g~~-~~~~~~~~~p~~g-l~~d~~g~L~va~~~~----gl~~~~-~~  145 (373)
                      ...| +++++++|+ +|++.. ++.|++++ .+++. .........+. . ++++++|+.+++....    .+..++ .+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            4556 999999887 887664 78999999 45554 44444456777 6 9999999744454333    577788 55


Q ss_pred             C-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCC-ceEEEEeCCCCeE---EEeecCCCC
Q 017317          146 G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPH-GKLLKYDPSLNET---SILLDSLFF  219 (373)
Q Consensus       146 g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~~~~~---~~~~~~~~~  219 (373)
                      + ......  .   ...+++++++|||+ +|+++...               .. -.+|.++.++...   .........
T Consensus       118 ~~~~~~~~--~---~~~~~~~~~spdg~~l~~~~~~~---------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~  177 (331)
T 3u4y_A          118 NKFISTIP--I---PYDAVGIAISPNGNGLILIDRSS---------------ANTVRRFKIDADGVLFDTGQEFISGGTR  177 (331)
T ss_dssp             TEEEEEEE--C---CTTEEEEEECTTSSCEEEEEETT---------------TTEEEEEEECTTCCEEEEEEEEECSSSS
T ss_pred             CCeEEEEE--C---CCCccceEECCCCCEEEEEecCC---------------CceEEEEEECCCCcEeecCCccccCCCC
Confidence            6 322211  1   12468999999995 88886431               11 2355555432211   122233456


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcc-eeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChH
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKA  297 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~  297 (373)
                      |.+++++|||+++|++....+.|..|++...+... ...+.  ....|.++++++||+ +|++....             
T Consensus       178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~-------------  242 (331)
T 3u4y_A          178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTEST-------------  242 (331)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSE-------------
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCC-------------
Confidence            89999999999999999888999999986543311 22222  235788999999998 67765432             


Q ss_pred             HHHHHHhcchhhhhccCCCccEEEEEECCC-CcE--EEEEeCC---CCceecceeEEEEe--CCEEEEeeCCCCeEEEee
Q 017317          298 TKHLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIV--IRKFEDP---NGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLP  369 (373)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~--~~~~~~~---~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~  369 (373)
                                           +.+..+|.+ |+.  +..+...   ..........+...  +.+||+++..++.|..++
T Consensus       243 ---------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          243 ---------------------VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             ---------------------EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ---------------------CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence                                 346677855 554  3333221   11111112334544  357999999888999998


Q ss_pred             CCC
Q 017317          370 LKA  372 (373)
Q Consensus       370 l~~  372 (373)
                      +..
T Consensus       302 ~~~  304 (331)
T 3u4y_A          302 ISG  304 (331)
T ss_dssp             TTS
T ss_pred             ecC
Confidence            764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.54  E-value=3.6e-13  Score=121.54  Aligned_cols=180  Identities=8%  Similarity=0.018  Sum_probs=126.2

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEc-CCceEEeeee-----cCccccCeEECCCCcEEEEECC------------Cc
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTWENWKLI-----GGDTLLGITTTQENEILVCDAD------------KG  138 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va~~~------------~g  138 (373)
                      ..|.+++++++|++|++. +.+|++++. +|+++.+...     ..++. ++++|++|++|+++..            .+
T Consensus        54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcE
Confidence            468899999999999987 568999994 5666655432     23467 8999999999998631            35


Q ss_pred             EEEEecCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeC--CCCeEE---
Q 017317          139 LLKVTEEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETS---  211 (373)
Q Consensus       139 l~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~---  211 (373)
                      |++++.+| ...+...     ...++++++++||+ +|++++.                 .++|++++.  .++...   
T Consensus       132 l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~~-----------------~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDSL-----------------SYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             EEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEGG-----------------GTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecCC-----------------CCcEEEEeccCCCCcccCcE
Confidence            88888656 5444322     34688999999995 8999864                 367888864  455432   


Q ss_pred             Eee---cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CCC-CEEEEEecC
Q 017317          212 ILL---DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDG-SFWIAILQL  284 (373)
Q Consensus       212 ~~~---~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~dG-~lwva~~~~  284 (373)
                      .+.   .....|.|++++++|+ +|++....++|.+|+.+..+   ...........|.+++++ +++ .|||++...
T Consensus       190 ~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~---~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          190 SVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGK---RLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCC---EEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCce---EEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            222   1235689999999997 99999888899999865222   211221112457889996 666 599998753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.53  E-value=1.8e-11  Score=112.05  Aligned_cols=218  Identities=12%  Similarity=0.164  Sum_probs=146.3

Q ss_pred             CCcceEEEecCCC-EEEEe-cCCeEEEEE-cCCceEEeeeec--C--------ccccCeEECCCCc-EEEEEC--CCcEE
Q 017317           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIG--G--------DTLLGITTTQENE-ILVCDA--DKGLL  140 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~-~~g~~~~~~~~~--~--------~p~~gl~~d~~g~-L~va~~--~~gl~  140 (373)
                      ..|.+++++++|. +|++. .++.|..++ .+++........  .        .|. +++++++|+ +|+++.  ...|+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR-ELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE-EEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc-eEEECCCCCEEEEEecCCCceEE
Confidence            4589999999887 88766 468999999 456543222211  1        267 899999986 888863  34588


Q ss_pred             EEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--
Q 017317          141 KVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--  215 (373)
Q Consensus       141 ~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--  215 (373)
                      .+| .++ ...... ..   ...+.+++++++|+ +|+++.                  .+.|+.+|..+++......  
T Consensus       168 ~~d~~~~~~~~~~~-~~---~~~~~~~~~s~dg~~l~~~~~------------------~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQ-NT---GKMSTGLALDSEGKRLYTTNA------------------DGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EEETTTTEEEEEEC-CC---CTTCCCCEEETTTTEEEEECT------------------TSEEEEEETTTTEEEEEEECC
T ss_pred             EEcCCCCceEEEec-CC---CCccceEEECCCCCEEEEEcC------------------CCeEEEEECCCCeEEEEEEcC
Confidence            888 556 322211 01   12477899999985 777753                  3789999998887654322  


Q ss_pred             ---CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhh
Q 017317          216 ---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEF  291 (373)
Q Consensus       216 ---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~  291 (373)
                         ....+.++++++|++.+|+++...+.|+.|+....+.  ...+.  . +.+.+++++++|+ +|++....       
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~-~~~~~~~~s~dg~~l~v~~~~~-------  293 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--LAKVA--A-PESLAVLFNPARNEAYVTHRQA-------  293 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--EEEEE--C-SSCCCEEEETTTTEEEEEETTT-------
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEE--c-CCCceEEECCCCCEEEEEECCC-------
Confidence               1334678999999999999998889999999754322  11221  1 2367899999997 78887543       


Q ss_pred             ccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCC
Q 017317          292 VHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLN  361 (373)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~  361 (373)
                                                 +.+..+|. +++.+..+....     .+..+... + +.||+++..
T Consensus       294 ---------------------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          294 ---------------------------GKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---------------------------TEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred             ---------------------------CeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence                                       24677775 577776665432     35666665 3 469998865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.53  E-value=2.4e-13  Score=136.84  Aligned_cols=226  Identities=13%  Similarity=0.120  Sum_probs=155.6

Q ss_pred             ecCCCEEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECC-CCcEEEEECC-CcEEEEecCC------cEEEeeccC
Q 017317           85 DRNGVLYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDAD-KGLLKVTEEG------VTVLASHVN  155 (373)
Q Consensus        85 d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~-~g~L~va~~~-~gl~~~~~~g------~~~l~~~~~  155 (373)
                      ++...|++... ..|.+++.++ +.+.+......|. +|++++ .+.||+++.. +.|++++.++      ...+.    
T Consensus       375 ~~~~~ll~~~~-~~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i----  448 (699)
T 1n7d_A          375 GSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI----  448 (699)
T ss_dssp             SSCCCBCCCCT-TC-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC----
T ss_pred             ccceeEEecCc-cceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE----
Confidence            33455665443 4688888544 4444445567899 999996 5689999765 4688887322      11111    


Q ss_pred             CccccccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEE
Q 017317          156 GSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDEDYLV  233 (373)
Q Consensus       156 ~~~~~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg~~l~  233 (373)
                      ...+..|.+|+++ ..|+||+++..                 .++|+++++++...+.+. ..+..|++|++++++.+||
T Consensus       449 ~~~~~~P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly  511 (699)
T 1n7d_A          449 SRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMY  511 (699)
T ss_dssp             CSCC--CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCE
T ss_pred             eCCCCCcceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEE
Confidence            1224468899999 46799999864                 468999999876655554 4578899999999877899


Q ss_pred             EEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCceeECCC-CCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhh
Q 017317          234 VCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD-GSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKL  311 (373)
Q Consensus       234 v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d-G~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  311 (373)
                      |++... ++|++++++|...   ..+.......|++|++|++ ++||++....                           
T Consensus       512 ~td~~~~~~I~~~~~dG~~~---~~l~~~~l~~PnGlavd~~~~~LY~aD~~~---------------------------  561 (699)
T 1n7d_A          512 WTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKL---------------------------  561 (699)
T ss_dssp             ECCCSSSCCEEBCCSSSCCC---CEESCSSCSSCCCEEECTTTCCEEEEETTT---------------------------
T ss_pred             EcccCCCCeEEEEeCCCCCe---eEEEeCCCCCccEEEEeccCCEEEEEecCC---------------------------
Confidence            999765 7899998876432   2232222357999999975 6899998653                           


Q ss_pred             ccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          312 VAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       312 ~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                             ..|.+++.+|...+.+....+ .+..+.++...+++||+....++.|.+++..
T Consensus       562 -------~~I~~~d~dG~~~~~~~~~~~-~~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          562 -------HSISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             -------TEEEEECSSSSCCEEECCCSS-SCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             -------CeEEEEccCCCceEEEEecCC-cCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence                   247888888866555543222 2345666776778999999999999999753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.5e-12  Score=124.27  Aligned_cols=183  Identities=13%  Similarity=0.145  Sum_probs=126.1

Q ss_pred             CcCCcceEEE-------ecCCC-EEEEecCC-------eEEEEE--cCCceE------EeeeecCccccCeEECC-CCcE
Q 017317           75 ILNGPEDVCV-------DRNGV-LYTATRDG-------WIKRLH--KNGTWE------NWKLIGGDTLLGITTTQ-ENEI  130 (373)
Q Consensus        75 ~~~~P~~ia~-------d~~G~-l~v~~~~g-------~I~~~~--~~g~~~------~~~~~~~~p~~gl~~d~-~g~L  130 (373)
                      .+..|..|++       +++|. ||+++..+       .|+.++  .+|.+.      .+. ....|+ ++++++ ++.|
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~-giavdp~~g~L  261 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCN-GATIHPINGEL  261 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCC-CEEECTTTCCE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCce-EEEEcCCCCeE
Confidence            3567999999       99887 99888654       377886  334552      333 456789 999998 6789


Q ss_pred             EEEECCCc-EEEEe-c-------CC-c-E-----------EEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccc
Q 017317          131 LVCDADKG-LLKVT-E-------EG-V-T-----------VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNW  187 (373)
Q Consensus       131 ~va~~~~g-l~~~~-~-------~g-~-~-----------~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~  187 (373)
                      |+++...+ |++++ .       ++ . +           .+... .  ....+..|+++++|+ |||+|..        
T Consensus       262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~--~~~~p~~ia~~p~G~~lYvaD~~--------  330 (496)
T 3kya_A          262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-A--DPSWEFQIFIHPTGKYAYFGVIN--------  330 (496)
T ss_dssp             EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-S--SSSCCEEEEECTTSSEEEEEETT--------
T ss_pred             EEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-C--CCCCceEEEEcCCCCEEEEEeCC--------
Confidence            99998766 89999 5       55 4 1           22211 1  123578999999997 8999975        


Q ss_pred             ccccccccCCceEEEEeCC--CCeE---EEeec---------------CCCCcc-eEEEc-------cCCCEEEEEeCCC
Q 017317          188 GLDLLEAKPHGKLLKYDPS--LNET---SILLD---------------SLFFAN-GVALS-------KDEDYLVVCETFK  239 (373)
Q Consensus       188 ~~~~~~~~~~g~l~~~d~~--~~~~---~~~~~---------------~~~~~~-gi~~~-------~dg~~l~v~~~~~  239 (373)
                               +.+|++++.+  ++.+   ..++.               .+..|. |++++       .+|+ |||+++.+
T Consensus       331 ---------~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N  400 (496)
T 3kya_A          331 ---------NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLN  400 (496)
T ss_dssp             ---------TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGG
T ss_pred             ---------CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCC
Confidence                     4689986543  3332   22221               245688 78886       4555 99999999


Q ss_pred             CeEEEEEecCCCCcceeEEecC-----------------------CCCCCCceeECCC-CCEEEEEecC
Q 017317          240 FRCLKYWLKGESKEQTEIFVEN-----------------------LPGGPDNIKLAPD-GSFWIAILQL  284 (373)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~~-----------------------~~g~p~~i~~d~d-G~lwva~~~~  284 (373)
                      ++|.+++.+|.    ...+...                       ....|.++++|++ |+|||+....
T Consensus       401 ~rIr~i~~~G~----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N  465 (496)
T 3kya_A          401 FCVRKVTPEGI----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG  465 (496)
T ss_dssp             TEEEEECTTCB----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEeCCCC----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence            99999985442    2222111                       1125888999997 9999999765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=3.8e-12  Score=116.23  Aligned_cols=181  Identities=14%  Similarity=0.171  Sum_probs=125.4

Q ss_pred             CCcceEEEecCCCEEEEecC-----CeEEEEEcCC-ceEEeee---ecCccccCeEECCCCcEEEEECC-------CcEE
Q 017317           77 NGPEDVCVDRNGVLYTATRD-----GWIKRLHKNG-TWENWKL---IGGDTLLGITTTQENEILVCDAD-------KGLL  140 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~-----g~I~~~~~~g-~~~~~~~---~~~~p~~gl~~d~~g~L~va~~~-------~gl~  140 (373)
                      ..|.+++++++|++|+++..     ++|++++.++ +.+.+..   ....+. +++++++|++|+++..       .+|+
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc-ceEECCCCCEEEEeccccccCCCceEE
Confidence            56899999999999988754     4899999554 4432221   234577 9999999999999763       4688


Q ss_pred             EEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC--CeEEEe--
Q 017317          141 KVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--NETSIL--  213 (373)
Q Consensus       141 ~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--~~~~~~--  213 (373)
                      +++ ..+ .+.+...     ...++++++++||+ +|+++..                 .+.|+++|.++  .....+  
T Consensus       166 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~-----------------~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          166 YVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTETT-----------------ANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSSSEEEEEE
T ss_pred             EEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeCC-----------------CCeEEEEEecCCCcCcccccc
Confidence            898 445 4444321     23578999999995 9998753                 36888888742  222211  


Q ss_pred             -----ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCC--C---CCCceeECCCC-CEEEEEe
Q 017317          214 -----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP--G---GPDNIKLAPDG-SFWIAIL  282 (373)
Q Consensus       214 -----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--g---~p~~i~~d~dG-~lwva~~  282 (373)
                           ..+...|.+++++++|+ +|+++..+++|.+|+.++.   ....+.....  +   .|.++++++|| +||+++.
T Consensus       224 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~---~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY---PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC---EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC---EEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence                 11224688999999998 9999877789999986442   2222321111  1   58899999887 7999987


Q ss_pred             cC
Q 017317          283 QL  284 (373)
Q Consensus       283 ~~  284 (373)
                      .+
T Consensus       300 ~g  301 (333)
T 2dg1_A          300 DI  301 (333)
T ss_dssp             CG
T ss_pred             cc
Confidence            64

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=2e-11  Score=108.96  Aligned_cols=216  Identities=14%  Similarity=0.087  Sum_probs=148.0

Q ss_pred             cCCCEEEEecCCeEEEEEc-CCceEEeeeec--CccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeeccCCccccc
Q 017317           86 RNGVLYTATRDGWIKRLHK-NGTWENWKLIG--GDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHVNGSRINL  161 (373)
Q Consensus        86 ~~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~--~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~  161 (373)
                      |+..|++++.+++|+.+++ +|+........  ..++ ++++.++|+++++ ...+++.++++| ...-.....   ...
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~---~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPA---GCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCT---TCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCC---Ccc
Confidence            3555567778899999996 88754332222  2577 8899999999995 457899999767 322222111   123


Q ss_pred             cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cC----CCCcceEEEccCCCEEEEE
Q 017317          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DS----LFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~----~~~~~gi~~~~dg~~l~v~  235 (373)
                      +.++.+.+||++++++..                ..++++.+|++++....+.  ..    ...+.+++++++|+ ++++
T Consensus        79 ~~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~  141 (276)
T 3no2_A           79 MQTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVP  141 (276)
T ss_dssp             EEEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEE
T ss_pred             ccccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEE
Confidence            456788899999998642                1468999998755443322  11    23467888999998 7788


Q ss_pred             eCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCC
Q 017317          236 ETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPL  315 (373)
Q Consensus       236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  315 (373)
                      ...+++|..|+.+|+.   ...+.  .++.|.+....++|+++++....                               
T Consensus       142 ~~~~~~v~~~d~~G~~---~w~~~--~~~~~~~~~~~~~g~~~v~~~~~-------------------------------  185 (276)
T 3no2_A          142 LFATSEVREIAPNGQL---LNSVK--LSGTPFSSAFLDNGDCLVACGDA-------------------------------  185 (276)
T ss_dssp             ETTTTEEEEECTTSCE---EEEEE--CSSCCCEEEECTTSCEEEECBTT-------------------------------
T ss_pred             ecCCCEEEEECCCCCE---EEEEE--CCCCccceeEcCCCCEEEEeCCC-------------------------------
Confidence            8888999999976431   22222  23567788899999999987654                               


Q ss_pred             CccEEEEEECCC-CcEEEEEeCC--CCceecceeEEEEe-CCEEEEeeCCC
Q 017317          316 HKKAAVVNVAAN-GIVIRKFEDP--NGKVMSFVTSALEF-DDHLYLGSLNT  362 (373)
Q Consensus       316 ~~~g~v~~~~~~-g~~~~~~~~~--~g~~~~~~~~~~~~-~g~L~vgs~~~  362 (373)
                         +.++.+|++ |+.+..+...  .+..+..++.+... +|++|++++.+
T Consensus       186 ---~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          186 ---HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             ---SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             ---CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence               258999988 9999998643  23234556776654 68999999744

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.48  E-value=3.5e-11  Score=110.41  Aligned_cols=188  Identities=16%  Similarity=0.141  Sum_probs=122.4

Q ss_pred             cCCcceEEEecCCC-EEEEe-cCCeEEEEE--cCCceEEeeeec------------CccccCeEECCCCcEEEEECCCc-
Q 017317           76 LNGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNGTWENWKLIG------------GDTLLGITTTQENEILVCDADKG-  138 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~-~~g~I~~~~--~~g~~~~~~~~~------------~~p~~gl~~d~~g~L~va~~~~g-  138 (373)
                      ...|..++++++|+ ||++. .++.|..++  .+|..+.+....            ..+. +++++++|++|+++...+ 
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCE
Confidence            46799999999887 77777 668888887  455544332211            1356 799999999999876544 


Q ss_pred             EEEEe-c-CC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCce--EEEEeCCCCeEEE
Q 017317          139 LLKVT-E-EG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK--LLKYDPSLNETSI  212 (373)
Q Consensus       139 l~~~~-~-~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~--l~~~d~~~~~~~~  212 (373)
                      +..++ . +| ........ ......+..++++|||+ +|+++..                 .+.  +|.++..+++.+.
T Consensus       164 v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGEL-----------------SSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCceEE
Confidence            66676 4 56 44432211 11223577899999997 8887643                 234  5555554566543


Q ss_pred             eec--C-------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC-CCcceeEEecCCCCCCCceeECCCCC-EEEEE
Q 017317          213 LLD--S-------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       213 ~~~--~-------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~  281 (373)
                      ...  .       ...+.+++|+|||++||+++...+.|..|+++.. .......+. .....|.++++++||+ ||++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEE
Confidence            211  1       1346789999999999999988889999997632 111111111 1234689999999997 67776


Q ss_pred             ec
Q 017317          282 LQ  283 (373)
Q Consensus       282 ~~  283 (373)
                      ..
T Consensus       305 ~~  306 (347)
T 3hfq_A          305 QN  306 (347)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=4.2e-11  Score=106.88  Aligned_cols=224  Identities=10%  Similarity=0.054  Sum_probs=148.3

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeec--CccccCeEECCCCcEEEEECC--CcEEEEecCC--cEEE
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIG--GDTLLGITTTQENEILVCDAD--KGLLKVTEEG--VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~--~~p~~gl~~d~~g~L~va~~~--~gl~~~~~~g--~~~l  150 (373)
                      ..+.+++++++|++++ +.+++|+.++++|+........  .... +..+.++|++++++..  ..++.++++|  +..+
T Consensus        37 ~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~  114 (276)
T 3no2_A           37 WECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNMKGEVLSKT  114 (276)
T ss_dssp             CCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE
T ss_pred             CCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE
Confidence            4688999999999999 5678899999888643322222  2344 6778899999998654  4577778767  2222


Q ss_pred             eeccC-CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317          151 ASHVN-GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~-~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg  229 (373)
                      ..... ..+...+..++++++|++++++..                 .+.|+.+|++ ++..........|.++...++|
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g  176 (276)
T 3no2_A          115 EFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNG  176 (276)
T ss_dssp             EECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECTTS
T ss_pred             eccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcCCC
Confidence            21111 112235667889999999998753                 5789999998 5544333333567888999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCC----CCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHh
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLP----GGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAA  304 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~----g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~  304 (373)
                      + +++++..+++|+.++.+..+.  ...+.. ..+    ..|.++.+.++|+++++...+...--               
T Consensus       177 ~-~~v~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~---------------  238 (276)
T 3no2_A          177 D-CLVACGDAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREA---------------  238 (276)
T ss_dssp             C-EEEECBTTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTG---------------
T ss_pred             C-EEEEeCCCCeEEEEeCcCCcE--EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccc---------------
Confidence            8 778877788999998762221  122221 111    23778889999999999875421000               


Q ss_pred             cchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEE
Q 017317          305 FPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSAL  349 (373)
Q Consensus       305 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~  349 (373)
                               .....+.+++++++|+++..|.+...  +..+++++
T Consensus       239 ---------~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~~~~~~  272 (276)
T 3no2_A          239 ---------GKGKHPQLVEIDSEGKVVWQLNDKVK--FGMISTIC  272 (276)
T ss_dssp             ---------GGSCCCSEEEECTTSBEEEEECCTTT--SCCCCEEE
T ss_pred             ---------cccCCceEEEECCCCCEEEEecCccc--ccceeeee
Confidence                     00012358999999999999876432  45666654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=1.8e-12  Score=119.44  Aligned_cols=187  Identities=12%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             CCcCCcceEEEecCCCEEEEec------CCeEEEEEc-CCce-EEeeee------cCccccCeEECC-CCcEEEEEC---
Q 017317           74 GILNGPEDVCVDRNGVLYTATR------DGWIKRLHK-NGTW-ENWKLI------GGDTLLGITTTQ-ENEILVCDA---  135 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~~------~g~I~~~~~-~g~~-~~~~~~------~~~p~~gl~~d~-~g~L~va~~---  135 (373)
                      +.+..|.+|++|++|+||+.+.      .++|++++. +|+. ..+...      ...+. ++++++ +|.+|+++.   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccC
Confidence            3477899999999999997663      479999994 5763 333211      13467 999996 568999986   


Q ss_pred             -CCcEEEEe-cCC-cEEEeec------------cCCccc-------------cccceeEEcCCC-cEEEEeCCccccccc
Q 017317          136 -DKGLLKVT-EEG-VTVLASH------------VNGSRI-------------NLADDLIAATDG-SIYFSVASTKFGLHN  186 (373)
Q Consensus       136 -~~gl~~~~-~~g-~~~l~~~------------~~~~~~-------------~~~~~l~~~~dG-~l~v~~~~~~~~~~~  186 (373)
                       ..+|+.++ .+| ...+...            ..+..+             ..+++|++++|| .||+++..       
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------  215 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------  215 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------
Confidence             36788888 556 3332211            011111             246899999999 59998764       


Q ss_pred             cccccccccCCceEEEEeCCC---Ce---------EEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEe-cCCCCc
Q 017317          187 WGLDLLEAKPHGKLLKYDPSL---NE---------TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWL-KGESKE  253 (373)
Q Consensus       187 ~~~~~~~~~~~g~l~~~d~~~---~~---------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~-~~~~~~  253 (373)
                                ...||+++.+.   +.         +.. ......|+|++++++|+ +|+++...++|.+|+. ++    
T Consensus       216 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G----  279 (343)
T 2qe8_A          216 ----------STSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR----  279 (343)
T ss_dssp             ----------CSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT----
T ss_pred             ----------CCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC----
Confidence                      24899987421   10         111 11234789999999997 9999999999999996 43    


Q ss_pred             ceeEEecC-CCCCCCceeECCCCCEEEEEecC
Q 017317          254 QTEIFVEN-LPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       254 ~~~~~~~~-~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +...+... ....|.+++++++|++|+++...
T Consensus       280 ~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          280 AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            23333322 13469999999999999998753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.46  E-value=5.3e-11  Score=108.21  Aligned_cols=227  Identities=14%  Similarity=0.099  Sum_probs=148.0

Q ss_pred             cCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC-CCcEEEEe-cCC-c-EEEeeccCCcc
Q 017317           86 RNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA-DKGLLKVT-EEG-V-TVLASHVNGSR  158 (373)
Q Consensus        86 ~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~-~~gl~~~~-~~g-~-~~l~~~~~~~~  158 (373)
                      ..+.+|+.. .++.|..++ .+|+..........+. +++++++|+ ||++.. ...++.++ .++ . ......     
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----   81 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-----   81 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-----
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-----
Confidence            367778655 678999999 5566544444445566 899999997 888876 34688888 566 4 322221     


Q ss_pred             ccccce-eEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          159 INLADD-LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       159 ~~~~~~-l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      ...+.. ++++++|+..++...              ....+.|+.+|.++++..........|++++++|||+++|+++.
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE
T ss_pred             CCCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec
Confidence            123456 999999974444321              00112899999988876655555567899999999999999988


Q ss_pred             CCCe-EEEEEecCCCC-cce-eEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhcc
Q 017317          238 FKFR-CLKYWLKGESK-EQT-EIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVA  313 (373)
Q Consensus       238 ~~~~-i~~~~~~~~~~-~~~-~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  313 (373)
                      ..+. +..|+++.... ... .... .....|.+++++++|+ +|++....                             
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~-----------------------------  197 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG-----------------------------  197 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT-----------------------------
T ss_pred             CCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC-----------------------------
Confidence            7777 88888764321 111 1111 2234588899999997 78887543                             


Q ss_pred             CCCccEEEEEECC-CCcE---EEEEeCCCCceecceeEEEEe-CC-EEEEeeCCCCeEEEeeCCC
Q 017317          314 PLHKKAAVVNVAA-NGIV---IRKFEDPNGKVMSFVTSALEF-DD-HLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       314 ~~~~~g~v~~~~~-~g~~---~~~~~~~~g~~~~~~~~~~~~-~g-~L~vgs~~~~~i~~~~l~~  372 (373)
                           +.+..++. +++.   +..+...     ..+..+..+ +| .||+++...+.|..+++..
T Consensus       198 -----~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          198 -----NSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             -----TEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             -----CeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence                 13556664 4565   5555432     234555555 33 5888888778888887753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.45  E-value=1.2e-10  Score=107.89  Aligned_cols=247  Identities=13%  Similarity=0.072  Sum_probs=145.3

Q ss_pred             cCCcceEEEecCCC-EEEEecCCeEEEEE-c-CCceEEeee--ecCccccCeEECCCCc-EEE--EE-------------
Q 017317           76 LNGPEDVCVDRNGV-LYTATRDGWIKRLH-K-NGTWENWKL--IGGDTLLGITTTQENE-ILV--CD-------------  134 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~~~g~I~~~~-~-~g~~~~~~~--~~~~p~~gl~~d~~g~-L~v--a~-------------  134 (373)
                      ...|..++++++|+ ||+++.+ .|..++ . +|+......  ..+.|. +++++++|+ ||+  ++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            45799999999987 7777766 888887 3 676543322  124578 899999998 343  32             


Q ss_pred             CCCcEEEEe--cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC-CCe
Q 017317          135 ADKGLLKVT--EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNE  209 (373)
Q Consensus       135 ~~~gl~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~  209 (373)
                      ..+.+..++  .+| ...............+.+++++|||+ +|+++..                 .+.|+.++.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCC
Confidence            222344444  355 32211111001124578999999996 7777643                 3577777766 566


Q ss_pred             EEEee--c---CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcc-eeEEecCCC----C---------CCCc
Q 017317          210 TSILL--D---SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQ-TEIFVENLP----G---------GPDN  268 (373)
Q Consensus       210 ~~~~~--~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~----g---------~p~~  268 (373)
                      ...+.  .   ....|.+++|+|||+++|+++...+.+..|+++..  +... ...+. .++    +         .|.+
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP-LIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE-SSCTTCCCBCTTTSSBSEEEE
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE-cCCCCcCCccccccccccccc
Confidence            54321  1   14568899999999999999887788888876531  1110 11111 111    1         3667


Q ss_pred             ee-ECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEE---EeCCCCceec
Q 017317          269 IK-LAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRK---FEDPNGKVMS  343 (373)
Q Consensus       269 i~-~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~---~~~~~g~~~~  343 (373)
                      ++ +++||+ ||++.......                           ......++.++.+|+....   .......  .
T Consensus       259 i~~~spdG~~l~v~~~~~~~~---------------------------~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--~  309 (365)
T 1jof_A          259 VCALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSG--G  309 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCC--T
T ss_pred             EEEECCCCCEEEEECCCCCCC---------------------------CCCeEEEEEECCCCCEEEeeeeeecCCCC--c
Confidence            89 999996 67766543100                           0001234555556775542   2211111  1


Q ss_pred             ceeEEEE---eCCEEEEeeCCCCeEEEeeCC
Q 017317          344 FVTSALE---FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       344 ~~~~~~~---~~g~L~vgs~~~~~i~~~~l~  371 (373)
                      ..-.+..   ++++||+++..++.|..++++
T Consensus       310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             ccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            1112333   356899999888888887764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.45  E-value=1.5e-11  Score=113.76  Aligned_cols=162  Identities=13%  Similarity=0.109  Sum_probs=109.3

Q ss_pred             ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEeecc-CCccccccceeEEcCC----CcEEEEeCCc
Q 017317          107 TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLASHV-NGSRINLADDLIAATD----GSIYFSVAST  180 (373)
Q Consensus       107 ~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~~~-~~~~~~~~~~l~~~~d----G~l~v~~~~~  180 (373)
                      +++.++.....|. +|+++++|+|||++..+.|++++ +| .+.+.... .......+.+|+++++    |.|||++...
T Consensus        22 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGGLEVPW-ALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECCCSCEE-EEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECCCCCce-EEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            4556666667899 99999999999999877788887 56 54443211 1122457899999998    7999997531


Q ss_pred             cccccccccccccccCCceEEEEeCCCCe---EEEeec-------CCCCcceEEEccCCCEEEEEeCC------------
Q 017317          181 KFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLD-------SLFFANGVALSKDEDYLVVCETF------------  238 (373)
Q Consensus       181 ~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~-------~~~~~~gi~~~~dg~~l~v~~~~------------  238 (373)
                      .            .....+|++++.++++   .+.+..       ....++++++++||. ||++...            
T Consensus       100 ~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~  166 (352)
T 2ism_A          100 E------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLAS  166 (352)
T ss_dssp             T------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred             C------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence            0            0012578999876442   222222       235678999999996 9999632            


Q ss_pred             -CCeEEEEEecCCCC----------cceeEEecCCCCCCCceeECC-CCCEEEEEecC
Q 017317          239 -KFRCLKYWLKGESK----------EQTEIFVENLPGGPDNIKLAP-DGSFWIAILQL  284 (373)
Q Consensus       239 -~~~i~~~~~~~~~~----------~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~  284 (373)
                       ..+|+|++.++.-.          ...+++... ...|.++++|+ +|+||++..+.
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~  223 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGP  223 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCC
Confidence             25899998765200          122344322 23589999999 89999999865

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.43  E-value=2.6e-11  Score=112.11  Aligned_cols=186  Identities=12%  Similarity=0.089  Sum_probs=120.9

Q ss_pred             cCCcceEEEecC----CCEEEEecC--------CeEEEEEcCCc------eEEeee-e----cCccccCeEECCCCcEEE
Q 017317           76 LNGPEDVCVDRN----GVLYTATRD--------GWIKRLHKNGT------WENWKL-I----GGDTLLGITTTQENEILV  132 (373)
Q Consensus        76 ~~~P~~ia~d~~----G~l~v~~~~--------g~I~~~~~~g~------~~~~~~-~----~~~p~~gl~~d~~g~L~v  132 (373)
                      ..+|.+|+++++    |.||+....        ++|.+++.++.      .+.+.. .    ...+. +|++++||.||+
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~-~l~~~pDG~Lyv  150 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGG-RIRFGPDGMLYI  150 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCC-CEEECTTSCEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCc-eEEECCCCcEEE
Confidence            467999999986    999987642        68999985432      222211 1    12467 899999999999


Q ss_pred             EECC--------------CcEEEEecCC-c---------EEEeeccCCccccccceeEEcC-CCcEEEEeCCcccccccc
Q 017317          133 CDAD--------------KGLLKVTEEG-V---------TVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNW  187 (373)
Q Consensus       133 a~~~--------------~gl~~~~~~g-~---------~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~  187 (373)
                      +...              ..|++++.+| +         ++++     ..+..|++|++++ +|+||+++.....     
T Consensus       151 t~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-----~G~rnp~Gla~d~~~g~l~v~d~g~~~-----  220 (354)
T 3a9g_A          151 TTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-----YGHRNPQGIDWHRASGVMVATEHGPVG-----  220 (354)
T ss_dssp             ECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-----ECCSCCCEEEECTTTCCEEEEECCSSS-----
T ss_pred             EECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-----EccCCcceEEEeCCCCCEEEEecCCCC-----
Confidence            8532              2588888555 2         2222     1245689999999 7999999865211     


Q ss_pred             ccccccccCCceEEEEeCCC--------------CeEE--Eee-cCCCCcceEEEc-------cCCCEEEEEeCCCCeEE
Q 017317          188 GLDLLEAKPHGKLLKYDPSL--------------NETS--ILL-DSLFFANGVALS-------KDEDYLVVCETFKFRCL  243 (373)
Q Consensus       188 ~~~~~~~~~~g~l~~~d~~~--------------~~~~--~~~-~~~~~~~gi~~~-------~dg~~l~v~~~~~~~i~  243 (373)
                               ...|.++.+..              +...  ... .....|.|+++.       .+| .+|+++...++|.
T Consensus       221 ---------~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~  290 (354)
T 3a9g_A          221 ---------HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLA  290 (354)
T ss_dssp             ---------CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEE
T ss_pred             ---------CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEE
Confidence                     11233332210              0000  011 223458899983       466 4999999999999


Q ss_pred             EEEecCC-CCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          244 KYWLKGE-SKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       244 ~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++++++. .....+.+.....+.|.++++++||.||+++.
T Consensus       291 ~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          291 AVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            9998753 22223344433356899999999999999986

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.41  E-value=1.4e-10  Score=101.47  Aligned_cols=195  Identities=15%  Similarity=0.154  Sum_probs=130.1

Q ss_pred             ccCCcCCcceEEEec-CCCEEE-EecCCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEECC-CcEEEEe--c
Q 017317           72 GEGILNGPEDVCVDR-NGVLYT-ATRDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDAD-KGLLKVT--E  144 (373)
Q Consensus        72 ~~g~~~~P~~ia~d~-~G~l~v-~~~~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~--~  144 (373)
                      ..|-...+.++++++ ++.||+ .+.++.|++++.+|++.....  ....+- ||+++.+|.+||++.. ++++.++  .
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            334446789999998 567994 668899999997787554332  235788 9999999999888643 4677766  3


Q ss_pred             CC-cEEEeec-cC---CccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeC--CCCeEEEeec-
Q 017317          145 EG-VTVLASH-VN---GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP--SLNETSILLD-  215 (373)
Q Consensus       145 ~g-~~~l~~~-~~---~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~~~~~~~~~~-  215 (373)
                      ++ +..+... ..   ........+|++|+++ +||++...                ....||.++.  .+...+.... 
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECH
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecch
Confidence            34 3322211 11   1223356799999987 89998643                2347888872  2222333211 


Q ss_pred             ------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC------CCCCCceeECCCCCEEEEEec
Q 017317          216 ------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL------PGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       216 ------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~g~p~~i~~d~dG~lwva~~~  283 (373)
                            ....+.+++++|...++|+.....+.|..++.+|.. ..........      .-.|.||++|++|+|||++-.
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-IGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-EEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence                  244678999999999999999999999999977642 1111111111      125889999999999999755


Q ss_pred             C
Q 017317          284 L  284 (373)
Q Consensus       284 ~  284 (373)
                      .
T Consensus       244 n  244 (255)
T 3qqz_A          244 N  244 (255)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.39  E-value=1.4e-09  Score=101.20  Aligned_cols=231  Identities=11%  Similarity=0.123  Sum_probs=157.0

Q ss_pred             CCcceEEEecCCC-EEEE-ecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC-cEE
Q 017317           77 NGPEDVCVDRNGV-LYTA-TRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-VTV  149 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~-~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g-~~~  149 (373)
                      ..|.++++.++|. ||++ ..++.|..++ .+++..........+. +++++++|+ ||++... +.|..++ .++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4588999999886 5554 4789999999 4666544444455777 999999996 7777654 5677788 566 322


Q ss_pred             EeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      ....     ...+.+++++++|+ +|++...                 .+.|+.+|..+++..........+..++++++
T Consensus       111 ~~~~-----~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC-----CCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2221     12467899999996 7777643                 47899999988877665555567889999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      ++.+|++....+.|+.+++.....  ...+  .....+.+++++++|+ +|++.....                      
T Consensus       169 g~~l~~~~~~~~~v~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~----------------------  222 (391)
T 1l0q_A          169 GTKVYVANFDSMSISVIDTVTNSV--IDTV--KVEAAPSGIAVNPEGTKAYVTNVDKY----------------------  222 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEE--EEEE--ECSSEEEEEEECTTSSEEEEEEECSS----------------------
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeE--EEEE--ecCCCccceEECCCCCEEEEEecCcC----------------------
Confidence            999999988888999999764321  1111  1234567789999996 566653110                      


Q ss_pred             hhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe--CCEEEEeeCCCCeEEEeeCC
Q 017317          308 LIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~  371 (373)
                                .+.+..+|. +++.+..+....     .+..+...  +..||++....+.|..+++.
T Consensus       223 ----------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          223 ----------FNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ----------CCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ----------CCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence                      124667774 466666665422     24555554  34788887777788888765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=3.8e-11  Score=109.76  Aligned_cols=178  Identities=11%  Similarity=0.073  Sum_probs=123.9

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeec-----CccccCeEECCCCcEEEEECC-------CcEEEEe
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG-----GDTLLGITTTQENEILVCDAD-------KGLLKVT  143 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~-----~~p~~gl~~d~~g~L~va~~~-------~gl~~~~  143 (373)
                      ..|.+++++++|++|+++. .+|++++ .+|+++.+....     ..+. ++++|++|++|+++..       .+|++++
T Consensus        90 ~~v~~i~~~~dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            3578899999999999885 4699999 466766554321     2467 8999999999998642       4688888


Q ss_pred             cCC-cEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCC--CC-eE---EEee-
Q 017317          144 EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS--LN-ET---SILL-  214 (373)
Q Consensus       144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--~~-~~---~~~~-  214 (373)
                       +| .+.+...     ...++++++++|| .+|+++..                 .+.|+++|.+  ++ +.   +.+. 
T Consensus       168 -~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~d~~~~~Gl~~~~~~~~~~  224 (326)
T 2ghs_A          168 -KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFID  224 (326)
T ss_dssp             -TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             -CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEECC-----------------CCEEEEEEcccccCCcccCceEEEE
Confidence             67 5544321     2357899999999 58998753                 3689999864  45 31   1221 


Q ss_pred             --cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC-CCC-CEEEEEecC
Q 017317          215 --DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA-PDG-SFWIAILQL  284 (373)
Q Consensus       215 --~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~dG-~lwva~~~~  284 (373)
                        .....|.+++++++|+ +|++....++|.+|+.++..   ...+. .....|.+++++ +++ .||+++...
T Consensus       225 ~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~---~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNH---IARYE-VPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCE---EEEEE-CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCE---EEEEE-CCCCCcEEEEEecCCCCEEEEEecCC
Confidence              1235688999999997 99998777899999864421   22222 112247788887 676 589998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.39  E-value=4.4e-10  Score=102.18  Aligned_cols=186  Identities=13%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             CCcceEEEecCCC-EEEEecC-CeEEEEEc---CCceEEeee--ecCccccCeEECCCCc-EEEEECCCc-EEEEe-cCC
Q 017317           77 NGPEDVCVDRNGV-LYTATRD-GWIKRLHK---NGTWENWKL--IGGDTLLGITTTQENE-ILVCDADKG-LLKVT-EEG  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~~-g~I~~~~~---~g~~~~~~~--~~~~p~~gl~~d~~g~-L~va~~~~g-l~~~~-~~g  146 (373)
                      ..|.+++++++|+ ||++..+ +.|..++.   +|+.+....  ..+.+. +++++++|+ ||++....+ +..++ .++
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            5689999999887 7777755 88888773   455443322  234778 999999997 778775444 66666 444


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEe------ecCC
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSIL------LDSL  217 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~------~~~~  217 (373)
                       ..........  ...+.+++++++|+ +|+++..                 .+.|+.+|..+ ++....      ....
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~  177 (343)
T 1ri6_A          117 LPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEG  177 (343)
T ss_dssp             EEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             ccccccccccC--CCCceEEEECCCCCEEEEecCC-----------------CCEEEEEEecCCCceeeecccccccCCC
Confidence             2222122221  13478899999995 7877632                 36788887665 544321      1223


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCC--CCcceeEEecCCC-----CCCCceeECCCCC-EEEEEe
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE--SKEQTEIFVENLP-----GGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~-----g~p~~i~~d~dG~-lwva~~  282 (373)
                      ..|.+++++||++.+|++....+.+..|+++..  .............     ..+..++++++|+ +|++..
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence            467889999999999999888889999998532  2211222211111     1344689999996 555553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.38  E-value=4.6e-11  Score=108.21  Aligned_cols=182  Identities=15%  Similarity=0.123  Sum_probs=124.8

Q ss_pred             CCcceEEEecCCCEEEEecC---CeEEEEE-cCCceEEeeee--cCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC-c
Q 017317           77 NGPEDVCVDRNGVLYTATRD---GWIKRLH-KNGTWENWKLI--GGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-V  147 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~---g~I~~~~-~~g~~~~~~~~--~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g-~  147 (373)
                      ..|.+|+++++|+||+++..   .+|++++ .+|+++.+...  ...+. |++...++.+|+++. ...|++++ ..+ .
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN-GITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE-EEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccC-cccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            46899999999999988732   3589988 67877665443  23456 888777788999985 45688888 444 3


Q ss_pred             EEEe-ec-----cCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCC-Ce---EEEeecC
Q 017317          148 TVLA-SH-----VNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE---TSILLDS  216 (373)
Q Consensus       148 ~~l~-~~-----~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~---~~~~~~~  216 (373)
                      ++.. ..     .....+..+++|  ++|| .||+++..                 .++|++|+.+. ++   .+.+. .
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-----------------~~~I~~~~~~~~g~~~~~~~~~-~  210 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-----------------KMLLLRIPVDSTDKPGEPEIFV-E  210 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-----------------TTEEEEEEBCTTSCBCCCEEEE-E
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-----------------CCEEEEEEeCCCCCCCccEEEe-c
Confidence            3321 11     111234567888  6666 79999864                 47899998764 32   22222 2


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCC-CCCCceeEC---CCC-CEEEEEecC
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLP-GGPDNIKLA---PDG-SFWIAILQL  284 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-g~p~~i~~d---~dG-~lwva~~~~  284 (373)
                      +..|.|++++++|+ +|+++..+++|.+|+.+|.    ..... -..+ ..|.+++++   +|+ +|||++..+
T Consensus       211 ~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~----~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          211 QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCCC----EEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            36799999999997 9999998999999986542    21111 1122 468999998   675 699998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.38  E-value=1.4e-09  Score=100.37  Aligned_cols=239  Identities=15%  Similarity=0.238  Sum_probs=144.3

Q ss_pred             cCCcceEEEecCCC-EEEEecC----CeEEEEE--cC-CceEEeee---ecCccccCeEECCCC-cEEEEECCCc-EEEE
Q 017317           76 LNGPEDVCVDRNGV-LYTATRD----GWIKRLH--KN-GTWENWKL---IGGDTLLGITTTQEN-EILVCDADKG-LLKV  142 (373)
Q Consensus        76 ~~~P~~ia~d~~G~-l~v~~~~----g~I~~~~--~~-g~~~~~~~---~~~~p~~gl~~d~~g-~L~va~~~~g-l~~~  142 (373)
                      ...|..++++++|+ ||+++.+    +.|..++  .+ |+.+.+..   ....|. .+++  +| .||+++...+ +..+
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEE
Confidence            57899999999887 7777653    6775554  43 65554432   235677 8888  45 5888875444 5556


Q ss_pred             e-c-CC-cEEEee--ccCCc-------cccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceE--EEEeCCC
Q 017317          143 T-E-EG-VTVLAS--HVNGS-------RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDPSL  207 (373)
Q Consensus       143 ~-~-~g-~~~l~~--~~~~~-------~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~~~  207 (373)
                      + . ++ ...+..  ...+.       ....++.++++|||+ +|+++..                 .+.+  |.++..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~  188 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNA  188 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTC
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCC
Confidence            5 3 34 322111  01110       112357799999996 8888743                 2444  4445544


Q ss_pred             C----e-E-------EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECC
Q 017317          208 N----E-T-------SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAP  273 (373)
Q Consensus       208 ~----~-~-------~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~  273 (373)
                      +    + .       .........|.+++|+|||+++|+++...+.|..|++++............  ....|.++++++
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence            3    2 1       122333456889999999999999998888999999874332222222111  112356899999


Q ss_pred             CCC-EEEEEec-CCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcE--EEEEeCCCCceecceeEE
Q 017317          274 DGS-FWIAILQ-LSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIV--IRKFEDPNGKVMSFVTSA  348 (373)
Q Consensus       274 dG~-lwva~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~--~~~~~~~~g~~~~~~~~~  348 (373)
                      ||+ ||++... ..                                ...++.++ .+|+.  +..+..  +   ..+..+
T Consensus       269 dg~~l~v~~~~~~~--------------------------------~i~v~~~~~~~g~~~~~~~~~~--g---~~~~~~  311 (361)
T 3scy_A          269 DGKYLYASNRLKAD--------------------------------GVAIFKVDETNGTLTKVGYQLT--G---IHPRNF  311 (361)
T ss_dssp             TSSEEEEEECSSSC--------------------------------EEEEEEECTTTCCEEEEEEEEC--S---SCCCEE
T ss_pred             CCCEEEEECCCCCC--------------------------------EEEEEEEcCCCCcEEEeeEecC--C---CCCceE
Confidence            998 5666554 21                                12355566 34553  333332  2   245566


Q ss_pred             EEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          349 LEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       349 ~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                      ..+ + ..||+++..++.|..++++
T Consensus       312 ~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          312 IITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEE
Confidence            665 3 4699999888888886554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.37  E-value=8.5e-11  Score=112.08  Aligned_cols=167  Identities=16%  Similarity=0.243  Sum_probs=110.8

Q ss_pred             ceeEeccCCcCCcceEEEecCCC--EEEEecCCeEEEEEcCCce--EEeee-------e-----cCccccCeEECCC---
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGV--LYTATRDGWIKRLHKNGTW--ENWKL-------I-----GGDTLLGITTTQE---  127 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~--l~v~~~~g~I~~~~~~g~~--~~~~~-------~-----~~~p~~gl~~d~~---  127 (373)
                      .++.++++ |..|++|++.++|.  |||+...|+|++++.+|..  +.+..       .     .+.++ ||+++++   
T Consensus         5 ~v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~   82 (463)
T 2wg3_C            5 CIQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKK   82 (463)
T ss_dssp             EEEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHH
T ss_pred             EEEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcC
Confidence            45667776 89999999999884  9999999999999866542  11111       1     23467 8999975   


Q ss_pred             -CcEEEEECC-------------CcEEEEe-cC--------C-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccc
Q 017317          128 -NEILVCDAD-------------KGLLKVT-EE--------G-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFG  183 (373)
Q Consensus       128 -g~L~va~~~-------------~gl~~~~-~~--------g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~  183 (373)
                       +.|||+...             ..|.++. ..        . .+++.........+....|+++|||.|||+.......
T Consensus        83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMIT  162 (463)
T ss_dssp             HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred             CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence             789997321             2466665 21        1 2344432222344667789999999999997652110


Q ss_pred             c--cccccccccccCCceEEEEeCCCC--------------------eEEEeecCCCCcceEEEccC-----CC-EEEEE
Q 017317          184 L--HNWGLDLLEAKPHGKLLKYDPSLN--------------------ETSILLDSLFFANGVALSKD-----ED-YLVVC  235 (373)
Q Consensus       184 ~--~~~~~~~~~~~~~g~l~~~d~~~~--------------------~~~~~~~~~~~~~gi~~~~d-----g~-~l~v~  235 (373)
                      .  ....++  .....|.|+|+|++++                    +.++++.++++|.|++|+++     |+ ++|.+
T Consensus       163 ~~~~~~~q~--~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~  240 (463)
T 2wg3_C          163 LDDMEEMDG--LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCS  240 (463)
T ss_dssp             HHHHHHCTT--CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEE
T ss_pred             CCccccccC--cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEec
Confidence            0  000111  1234689999999863                    34677889999999999997     33 56777


Q ss_pred             eC
Q 017317          236 ET  237 (373)
Q Consensus       236 ~~  237 (373)
                      +.
T Consensus       241 D~  242 (463)
T 2wg3_C          241 DS  242 (463)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.32  E-value=8.6e-10  Score=100.80  Aligned_cols=224  Identities=11%  Similarity=0.131  Sum_probs=136.2

Q ss_pred             eEEeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cCC-cEEEeec--cCCccccccceeEEcCC----CcEEEEeC
Q 017317          108 WENWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EEG-VTVLASH--VNGSRINLADDLIAATD----GSIYFSVA  178 (373)
Q Consensus       108 ~~~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~g-~~~l~~~--~~~~~~~~~~~l~~~~d----G~l~v~~~  178 (373)
                      ++.++.....|. +|++.++|+|||++. .+.|++++ .+| .+.+...  ........+.+|+++||    |.||++.+
T Consensus        24 ~~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            345566677899 999999999999997 55688888 456 5444321  11223456889999984    89999743


Q ss_pred             CccccccccccccccccCCceEEEEeCCCC--------eEEEeec-----CCCCcceEEEccCCCEEEEEeC--------
Q 017317          179 STKFGLHNWGLDLLEAKPHGKLLKYDPSLN--------ETSILLD-----SLFFANGVALSKDEDYLVVCET--------  237 (373)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~--------  237 (373)
                      .               ....+|+|+..+.+        +.+.+..     ..++...|+|++||. |||+..        
T Consensus       103 ~---------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          103 S---------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLS  166 (347)
T ss_dssp             C---------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGT
T ss_pred             c---------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccc
Confidence            2               12357888865431        1233322     234566799999996 999842        


Q ss_pred             -----CCCeEEEEEecCCC-----CcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          238 -----FKFRCLKYWLKGES-----KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       238 -----~~~~i~~~~~~~~~-----~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                           ...+|+|++.++.-     ....+++... ...|.++++|++|+||++..+.... .+                 
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G-~RNp~Gla~dp~G~L~~~d~g~~~~-de-----------------  227 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYG-HRNVQGLAWDDKQRLFASEFGQDTW-DE-----------------  227 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBC-CSBCCEEEECTTCCEEEEECCSSSC-EE-----------------
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeC-CCCcceEEECCCCCEEEEecCCCCC-ce-----------------
Confidence                 35789999877631     1123455532 2358999999999999999865310 00                 


Q ss_pred             hhhhccCCCccEEEEEEC---CCC--cEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          308 LIKLVAPLHKKAAVVNVA---ANG--IVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~---~~g--~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                       +..+.....+|.-....   ..+  ..+..+. +.   ...++.+.+.+|.+|++.+.+.+|.++.+..
T Consensus       228 -ln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~  292 (347)
T 3das_A          228 -LNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TD---EASPSGIAYAEGSVWMAGLRGERLWRIPLKG  292 (347)
T ss_dssp             -EEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TT---TCCEEEEEEETTEEEEEESTTCSEEEEEEET
T ss_pred             -eeEEcCCCEecCCcccCCCCCccccCCcEecC-CC---CCCCcceEEEcCceeeccccCCEEEEEEecC
Confidence             00000011111000000   000  0111221 11   1246788888899999999999999998753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.32  E-value=1.4e-09  Score=98.85  Aligned_cols=175  Identities=12%  Similarity=0.095  Sum_probs=113.6

Q ss_pred             CCCEEEE-ecCCeEEEEEc--CCceEEe--eeecCccccCeEECCCCc-EEEEECC-CcEEEEe-c--CC-cEEEeeccC
Q 017317           87 NGVLYTA-TRDGWIKRLHK--NGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E--EG-VTVLASHVN  155 (373)
Q Consensus        87 ~G~l~v~-~~~g~I~~~~~--~g~~~~~--~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~--~g-~~~l~~~~~  155 (373)
                      +..+|++ ..++.|..++.  +|+.+..  ......+. +++++++|+ ||++... ..+..++ .  ++ .+.+.....
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc-eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            3567776 46888988874  3544332  23345688 999999997 8888765 4566655 3  55 554433211


Q ss_pred             CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCe---EEEeecCCCCcceEEEccCCCE
Q 017317          156 GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~~gi~~~~dg~~  231 (373)
                      .   ..+..++++++|+ +|++...                 .+.|..+|.+.+.   ..........+.++++++|++.
T Consensus        83 ~---~~~~~~~~s~dg~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           83 P---GSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             S---SCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred             C---CCCcEEEEcCCCCEEEEEecC-----------------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence            1   2578999999996 7777642                 3567777663232   2223344556889999999999


Q ss_pred             EEEEeCCCCeEEEEEecC-CCCccee--EEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          232 LVVCETFKFRCLKYWLKG-ESKEQTE--IFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~-~~~~~~~--~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      +|+++...+.|..|++.. .+.....  .........|.+++++++|+ +|++..
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence            999987788999999865 3222211  22212234677899999997 667653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=2.5e-10  Score=100.47  Aligned_cols=195  Identities=12%  Similarity=0.123  Sum_probs=131.3

Q ss_pred             ccccCeEECCCCcEEEEEC---CCcEEEEe-cCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccc
Q 017317          117 DTLLGITTTQENEILVCDA---DKGLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLD  190 (373)
Q Consensus       117 ~p~~gl~~d~~g~L~va~~---~~gl~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~  190 (373)
                      .+. ||+++++|.||+++.   ...|..+| .+| . ..+.  .+.  ..+..+++++ +++||+++..           
T Consensus        22 f~~-Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--l~~--~~fgeGi~~~-g~~lyv~t~~-----------   84 (266)
T 2iwa_A           22 FTQ-GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--MDD--SYFGEGLTLL-NEKLYQVVWL-----------   84 (266)
T ss_dssp             CEE-EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--CCT--TCCEEEEEEE-TTEEEEEETT-----------
T ss_pred             Ccc-cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--cCC--CcceEEEEEe-CCEEEEEEec-----------
Confidence            467 999998899999974   24688888 677 3 3222  111  1234567776 4599999864           


Q ss_pred             cccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCc
Q 017317          191 LLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDN  268 (373)
Q Consensus       191 ~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~  268 (373)
                            .+.++.||+++.+...-.... .+.|..+++||+.+|+++ +.+.|+.+|....+....-.....  ....|+.
T Consensus        85 ------~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           85 ------KNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             ------CSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             ------CCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence                  478999999887654433322 578888999999999998 678999998654322111111111  1124667


Q ss_pred             eeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCC--------
Q 017317          269 IKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNG--------  339 (373)
Q Consensus       269 i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g--------  339 (373)
                      +.+. +|.+|++.+..                                  +.|..+|+ +|+++..+.-...        
T Consensus       157 le~~-dg~lyvn~~~~----------------------------------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQT----------------------------------DCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             EEEE-TTEEEEEETTS----------------------------------SEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             EEEE-CCEEEEecCCC----------------------------------CeEEEEECCCCcEEEEEECCCccccccccc
Confidence            7776 78999988654                                  25788895 6888888754210        


Q ss_pred             -ceecceeEEEEe--CCEEEEeeCCCCeEEEeeCC
Q 017317          340 -KVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       340 -~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~  371 (373)
                       .....+.++..+  +++||+++-..+.|..+++.
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence             001245677666  36999999999999999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=1.3e-09  Score=98.66  Aligned_cols=223  Identities=12%  Similarity=0.012  Sum_probs=141.8

Q ss_pred             CcceEEEecCC-CEEEEe-cCCeEEEEE-cCCceEEeeeecC------ccccCeEECCCC-cEEEEE------------C
Q 017317           78 GPEDVCVDRNG-VLYTAT-RDGWIKRLH-KNGTWENWKLIGG------DTLLGITTTQEN-EILVCD------------A  135 (373)
Q Consensus        78 ~P~~ia~d~~G-~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~------~p~~gl~~d~~g-~L~va~------------~  135 (373)
                      .|.+++++++| .+|+.. .++.|..++ .+++.........      .+. +++++++| .||++.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            48999999988 577655 568999999 4565443222222      678 99999999 578875            2


Q ss_pred             CCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          136 DKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       136 ~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ...+..++ .++ .......  +   ..+.++++++||+ ||+++                    +.|+.+|..+++...
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~~~~~~~  168 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLG--------------------RDLHVMDPEAGTLVE  168 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEES--------------------SSEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeC--------------------CeEEEEECCCCcEee
Confidence            35688888 555 3222111  1   2467899999996 88872                    469999998887654


Q ss_pred             eecCCCCcceEEEccCCCEEEEEeCCCC-----------------------eEEEEEecCCCCcceeEEecCCCCCCCce
Q 017317          213 LLDSLFFANGVALSKDEDYLVVCETFKF-----------------------RCLKYWLKGESKEQTEIFVENLPGGPDNI  269 (373)
Q Consensus       213 ~~~~~~~~~gi~~~~dg~~l~v~~~~~~-----------------------~i~~~~~~~~~~~~~~~~~~~~~g~p~~i  269 (373)
                      .......+..+.+++|++.+|++....+                       .|..++....+... ..+. .....|.++
T Consensus       169 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~-~~~~~~~~~  246 (337)
T 1pby_B          169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVR-IMDVFYFST  246 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEE-ECSSCEEEE
T ss_pred             eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecC-CCCCceeeE
Confidence            4433332345588999988887765444                       35677765433221 1111 223456779


Q ss_pred             eECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeE
Q 017317          270 KLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTS  347 (373)
Q Consensus       270 ~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~  347 (373)
                      ++++||+ +|++  .+                                   .+..+|. +++.+..+....     .+..
T Consensus       247 ~~s~dg~~l~~~--~~-----------------------------------~v~~~d~~~~~~~~~~~~~~-----~~~~  284 (337)
T 1pby_B          247 AVNPAKTRAFGA--YN-----------------------------------VLESFDLEKNASIKRVPLPH-----SYYS  284 (337)
T ss_dssp             EECTTSSEEEEE--ES-----------------------------------EEEEEETTTTEEEEEEECSS-----CCCE
T ss_pred             EECCCCCEEEEe--CC-----------------------------------eEEEEECCCCcCcceecCCC-----ceee
Confidence            9999997 5655  22                                   3677775 456666654322     2455


Q ss_pred             EEEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          348 ALEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       348 ~~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                      +... + ..||+++. .+.|..+++.
T Consensus       285 ~~~s~dg~~l~~~~~-~~~i~v~d~~  309 (337)
T 1pby_B          285 VNVSTDGSTVWLGGA-LGDLAAYDAE  309 (337)
T ss_dssp             EEECTTSCEEEEESB-SSEEEEEETT
T ss_pred             EEECCCCCEEEEEcC-CCcEEEEECc
Confidence            5554 3 46888754 5678888775

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.28  E-value=5.9e-09  Score=96.53  Aligned_cols=187  Identities=14%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             CEEEEecC--CeEEEEE---cCCceEEeeee----cCccccCeEECCCCc-EEEEECCCcEEEEe-c-CC-cEEEeeccC
Q 017317           89 VLYTATRD--GWIKRLH---KNGTWENWKLI----GGDTLLGITTTQENE-ILVCDADKGLLKVT-E-EG-VTVLASHVN  155 (373)
Q Consensus        89 ~l~v~~~~--g~I~~~~---~~g~~~~~~~~----~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~-~g-~~~l~~~~~  155 (373)
                      .+|+|+..  ++|+.+.   .+|+.+.+...    ...|. +++++++|+ ||+++.. .+..++ . +| ...+.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~-~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCc-EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            57888853  5676654   35665544321    23678 999999997 7888765 677777 4 67 443322211


Q ss_pred             CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-Eee----cCCCCcceEEEccCC
Q 017317          156 GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL----DSLFFANGVALSKDE  229 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~----~~~~~~~gi~~~~dg  229 (373)
                      +   ..+..++++|||+ +|+...... ....+............+|.++.+ ++.. .+.    .....+++++++|||
T Consensus        82 ~---g~~~~~~~spdg~~l~~~~~~~~-~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           82 G---GHPRANDADTNTRAIFLLAAKQP-PYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             C---SSGGGGCTTSCCEEEEEEECSST-TCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             C---CCCccEEECCCCCEEEEEEecCC-cceeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCCC
Confidence            1   1266789999997 344322100 000000000000112345555544 3332 221    234578999999999


Q ss_pred             CEEEEEeCCCCeEEEEEec-CCCCcceeEEecCC-CCCCCceeECCCCC-EEEEEe
Q 017317          230 DYLVVCETFKFRCLKYWLK-GESKEQTEIFVENL-PGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~-~g~p~~i~~d~dG~-lwva~~  282 (373)
                      +++|+++...+.|..|+++ ..+......+.... ...|.++++++||+ +|++..
T Consensus       157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            9999999888899999986 33322111121111 34688999999996 677654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.27  E-value=5.1e-09  Score=102.41  Aligned_cols=233  Identities=9%  Similarity=-0.053  Sum_probs=149.7

Q ss_pred             EEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEec--CCcEEEeeccCCc
Q 017317           83 CVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVTE--EGVTVLASHVNGS  157 (373)
Q Consensus        83 a~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~~--~g~~~l~~~~~~~  157 (373)
                      +++++|.+|+.. .++.|..+| .+++..........++ +++++++|+ ||+++....|..+|.  ...+.+.....+ 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-
Confidence            477889999665 678899999 5565543333334478 999999995 888887766777774  222322221122 


Q ss_pred             cccccceeEEcC----CCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC------------CCCc
Q 017317          158 RINLADDLIAAT----DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFA  220 (373)
Q Consensus       158 ~~~~~~~l~~~~----dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------~~~~  220 (373)
                        ..+..++++|    ||+ +|+++..                 .+.|..+|..+++.......            ...+
T Consensus       222 --~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          222 --IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             --CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCce
Confidence              3578999999    984 7887632                 36788889887765443221            1135


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHH
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATK  299 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~  299 (373)
                      .++.++++++.+|++....+.|..++....+.......  .....|.+++++++|++ +++....               
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~---------------  345 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNS---------------  345 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGG---------------
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecCC---------------
Confidence            68999999999999998889999999765432221122  12347889999999984 5555432               


Q ss_pred             HHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeC-CCCeEEEeeCCC
Q 017317          300 HLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSL-NTNFIGKLPLKA  372 (373)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~-~~~~i~~~~l~~  372 (373)
                                         +.+..+| .+|+.+..+......+......+... ++.+|+.+. ..+.|..++++.
T Consensus       346 -------------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          346 -------------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             -------------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             -------------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence                               1355577 46777777653221111112223222 378998874 567898888753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.26  E-value=6.8e-09  Score=96.46  Aligned_cols=168  Identities=15%  Similarity=0.210  Sum_probs=115.3

Q ss_pred             CEEE-EecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEE-CCCcEEEEe-cCC-cEEEeeccCCcccccc
Q 017317           89 VLYT-ATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCD-ADKGLLKVT-EEG-VTVLASHVNGSRINLA  162 (373)
Q Consensus        89 ~l~v-~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~-~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~  162 (373)
                      .+|+ +..++.|..++ .+++..........+. +++++++|+ ||++. ..+.|..++ .++ ....... .    ..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~----~~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G----SSP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S----SSE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcc-eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-C----CCc
Confidence            4564 55788999998 4555444333445677 999999997 56665 334577777 566 3222111 1    257


Q ss_pred             ceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe
Q 017317          163 DDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (373)
Q Consensus       163 ~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  241 (373)
                      .+++++++|+ ||++...                 .+.|+.+|..+++..........+.+++++++++.+|++....+.
T Consensus        77 ~~~~~spdg~~l~~~~~~-----------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             EEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             cceEECCCCCEEEEEECC-----------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCE
Confidence            8999999996 7777542                 478999999988776655555678899999999999999888899


Q ss_pred             EEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEec
Q 017317          242 CLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (373)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~  283 (373)
                      |+.+++...+.  ...+.  ....+..++++++|+ +|++...
T Consensus       140 v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          140 VSVINTVTKAV--INTVS--VGRSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EEEEETTTTEE--EEEEE--CCSSEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCcE--EEEEe--cCCCcceEEECCCCCEEEEEeCC
Confidence            99999754321  11221  234577889999996 5566543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.23  E-value=1.5e-09  Score=95.36  Aligned_cols=153  Identities=12%  Similarity=0.026  Sum_probs=107.0

Q ss_pred             cCCcceEEEecCCCEEEEe-cCCeEEEEEc-CCceEEeeeecCccccCeEECCCC-cEEEEECCCcEEEEe-cCC--cEE
Q 017317           76 LNGPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQEN-EILVCDADKGLLKVT-EEG--VTV  149 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~gl~~~~-~~g--~~~  149 (373)
                      -..+++++.+ +++||+.+ .++.+.++|. +++........ .+. |..+.+|| +||+++....+..+| .+.  ...
T Consensus        65 ~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           65 SYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            3457788888 67999877 5789999994 44433222223 244 44444444 799998656688888 443  333


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--CC----------
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SL----------  217 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~----------  217 (373)
                      +.....+.+...+|.+.+. +|.+|++...                 .+.|.++|+.++++.....  ++          
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence            3322334455678888887 8999998753                 4689999999998764332  11          


Q ss_pred             --CCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          218 --FFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       218 --~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                        ..|+||+++++++.+||+....+.++.+++..
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence              36799999999999999999889999988653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.23  E-value=7.5e-09  Score=97.56  Aligned_cols=250  Identities=14%  Similarity=0.126  Sum_probs=158.7

Q ss_pred             CcceEEEecCCCEEEE-ecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCc-EEEEEC-CCcEEEEe-cCC-cEEE
Q 017317           78 GPEDVCVDRNGVLYTA-TRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENE-ILVCDA-DKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~-L~va~~-~~gl~~~~-~~g-~~~l  150 (373)
                      ...++++.++|.+|+. ..++.|..++ .+++.. .+......+. +++++++|+ +|++.. .+.+..++ .++ ....
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            3456888888998854 4779999999 444433 3332345667 899999886 556664 34577788 566 3221


Q ss_pred             eeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg  229 (373)
                      ..   .  ...+.+++++++| .+|++......        +  ....+.|+.+|..+++..........+.++++++++
T Consensus       250 ~~---~--~~~~~~~~~~~~g~~l~~~~~~~~~--------~--~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  314 (433)
T 3bws_A          250 TD---K--IGLPRGLLLSKDGKELYIAQFSASN--------Q--ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE  314 (433)
T ss_dssp             CC---C--CSEEEEEEECTTSSEEEEEEEESCT--------T--CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred             ec---C--CCCceEEEEcCCCCEEEEEECCCCc--------c--ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence            11   1  1247889999999 46666432000        0  012478999998877665444333467889999999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      +.+|++....+.+..|++...+.  ...+.  ....+..++++++|+ +|++..........+                 
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~-----------------  373 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKKV--QKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY-----------------  373 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEE--EEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCT-----------------
T ss_pred             CEEEEEecCCCEEEEEECCCCcE--EEEec--CCCCCCeEEEcCCCCEEEEEecCCCcccccc-----------------
Confidence            99999988899999999764321  11221  234577899999997 677765421000000                 


Q ss_pred             hhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCCC
Q 017317          309 IKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~~  372 (373)
                         +..+...|.+..+|. +++.+..+...     ..+..+... + ..|++++.....|..+++.+
T Consensus       374 ---~~~g~~dg~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          374 ---LKKGLVLGKVYVIDTTTDTVKEFWEAG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ---TSCCSSCCEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ---ccccccceEEEEEECCCCcEEEEecCC-----CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence               001334567888885 57777776542     246677665 3 47888887678898888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.19  E-value=4.7e-09  Score=91.34  Aligned_cols=148  Identities=19%  Similarity=0.231  Sum_probs=105.2

Q ss_pred             cceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeec
Q 017317           79 PEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH  153 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~  153 (373)
                      .++++.+ +++||+.+ .++.++++| .+.+...-....+... |++.| .+.||+++....|..+| .+.  ...+.-.
T Consensus        89 geGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A           89 GEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             eeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence            4778887 67999877 578899999 4555433333345667 88876 35899998666688888 444  3333323


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-------------CCCc
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------------LFFA  220 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-------------~~~~  220 (373)
                      ..+.+...+|.+... +|+||+....                 ...|.++|++++++....+-             ...+
T Consensus       166 ~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl  227 (262)
T 3nol_A          166 AHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL  227 (262)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred             cCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence            345566677888776 8999998764                 36899999999987654321             2367


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~  247 (373)
                      ||||++|+++.|||+.-.=.+++++.+
T Consensus       228 NGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          228 NGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             EEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            999999999999999865566776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.18  E-value=9.5e-09  Score=94.65  Aligned_cols=186  Identities=15%  Similarity=0.152  Sum_probs=114.7

Q ss_pred             CCcceEEEecCCCEEEEe-cCCeEEEEE--cCCceEEe----eee----------cCccccCeEECCCCc-EEEEECCC-
Q 017317           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH--KNGTWENW----KLI----------GGDTLLGITTTQENE-ILVCDADK-  137 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~-~~g~I~~~~--~~g~~~~~----~~~----------~~~p~~gl~~d~~g~-L~va~~~~-  137 (373)
                      ..|..+++ .+..||++. .++.|..++  .++.....    ...          ...++ +++++++|+ ||+++... 
T Consensus       100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCCC
Confidence            56888888 345578776 567888887  34432211    111          11236 799999997 88887643 


Q ss_pred             cEEEEe-cCC-c----E-EE-e---eccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeC
Q 017317          138 GLLKVT-EEG-V----T-VL-A---SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       138 gl~~~~-~~g-~----~-~l-~---~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  205 (373)
                      .+..++ ... .    + .. .   ..........+..++++|||+ +|+++..                 .+.|..++.
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~  240 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----------------GGTVIAFRY  240 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TCEEEEEEE
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----------------CCeEEEEEe
Confidence            355554 211 1    1 10 0   001111224578899999996 7888642                 356777776


Q ss_pred             CCCeEEEeec------CCCCcceEEEccCCCEEEEEeCC-CCeEEEEEecC--CCCcceeEEecCCCCCCCceeECCCCC
Q 017317          206 SLNETSILLD------SLFFANGVALSKDEDYLVVCETF-KFRCLKYWLKG--ESKEQTEIFVENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       206 ~~~~~~~~~~------~~~~~~gi~~~~dg~~l~v~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~g~p~~i~~d~dG~  276 (373)
                      ++++.+.+..      ....+.+++|+|||++||+++.. .+.|..|+++.  .+......+. . ...|.++++++||+
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGK  318 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCC
Confidence            6666543321      22446799999999999999988 78899998852  2222222222 2 34789999999997


Q ss_pred             -EEEEEec
Q 017317          277 -FWIAILQ  283 (373)
Q Consensus       277 -lwva~~~  283 (373)
                       ||++...
T Consensus       319 ~l~~~~~~  326 (361)
T 3scy_A          319 YLLVACRD  326 (361)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence             6766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.18  E-value=1.7e-09  Score=99.85  Aligned_cols=195  Identities=9%  Similarity=0.128  Sum_probs=116.0

Q ss_pred             CCcceEEEec----CCCEEEEec--------CCeEEEEEcC---Cc---eEEeee-ec------CccccCeEECCCCcEE
Q 017317           77 NGPEDVCVDR----NGVLYTATR--------DGWIKRLHKN---GT---WENWKL-IG------GDTLLGITTTQENEIL  131 (373)
Q Consensus        77 ~~P~~ia~d~----~G~l~v~~~--------~g~I~~~~~~---g~---~~~~~~-~~------~~p~~gl~~d~~g~L~  131 (373)
                      .+|.+|++++    +|.||+...        ..+|.+++.+   ++   .+.+.. .+      ..+. +|++++||.||
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~-~l~~~pdG~Ly  144 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGG-RLVFDGKGYLF  144 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCC-CEEECSSSEEE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCc-cEEECCCCcEE
Confidence            5678999998    699998752        3478888732   22   222211 11      2366 89999999999


Q ss_pred             EEECC--------------CcEEEEecCC-c--------------EEEeeccCCccccccceeEEcC-CCcEEEEeCCc-
Q 017317          132 VCDAD--------------KGLLKVTEEG-V--------------TVLASHVNGSRINLADDLIAAT-DGSIYFSVAST-  180 (373)
Q Consensus       132 va~~~--------------~gl~~~~~~g-~--------------~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~-  180 (373)
                      |+...              ..|++++.+| +              ++++     ..++.|.+|++++ +|+||+++... 
T Consensus       145 v~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-----~G~rnp~gl~~d~~~g~l~~~d~g~~  219 (353)
T 2g8s_A          145 IALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-----YGIRNPQGMAMNPWSNALWLNEHGPR  219 (353)
T ss_dssp             EEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-----ECCSEEEEEEEETTTTEEEEEEECSB
T ss_pred             EEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE-----EcCcCccceEEECCCCCEEEEecCCC
Confidence            99643              2588888544 2              1111     1345688999999 79999998642 


Q ss_pred             ------------cccccccccccccccCCceEEEEeC-----CCCeE--EEeecCCCCcceEEEcc-------CCCEEEE
Q 017317          181 ------------KFGLHNWGLDLLEAKPHGKLLKYDP-----SLNET--SILLDSLFFANGVALSK-------DEDYLVV  234 (373)
Q Consensus       181 ------------~~~~~~~~~~~~~~~~~g~l~~~d~-----~~~~~--~~~~~~~~~~~gi~~~~-------dg~~l~v  234 (373)
                                  +||........   ...+.  .+..     ..+..  .........|.|+++..       +| .+|+
T Consensus       220 ~~dei~~i~~G~nyGwp~~~~~~---~~~~~--~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g-~l~v  293 (353)
T 2g8s_A          220 GGDEINIPQKGKNYGWPLATWGI---NYSGF--KIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQ-KLFI  293 (353)
T ss_dssp             SCEEEECCCTTCBCCTTTBCSSB---CTTSS--CCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTT-EEEE
T ss_pred             CCcEEeEeccCCcCCCCCccCCC---CCCCC--ccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCC-cEEE
Confidence                        12211100000   00000  0000     00000  00011223578888874       34 5999


Q ss_pred             EeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          235 CETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ++...++|.++++++.+....+.+.....+.|.++++++||.||+++..
T Consensus       294 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~  342 (353)
T 2g8s_A          294 GALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDE  342 (353)
T ss_dssp             EETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECS
T ss_pred             EEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeC
Confidence            9999999999998754322223343333468999999999999998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.18  E-value=1.2e-08  Score=99.73  Aligned_cols=237  Identities=13%  Similarity=0.128  Sum_probs=146.7

Q ss_pred             cceEEEecCCC-EEEEecCCeEEEEEc---CCceEEeeeecCccccCeEECC----CCc-EEEEEC-CCcEEEEe-cCC-
Q 017317           79 PEDVCVDRNGV-LYTATRDGWIKRLHK---NGTWENWKLIGGDTLLGITTTQ----ENE-ILVCDA-DKGLLKVT-EEG-  146 (373)
Q Consensus        79 P~~ia~d~~G~-l~v~~~~g~I~~~~~---~g~~~~~~~~~~~p~~gl~~d~----~g~-L~va~~-~~gl~~~~-~~g-  146 (373)
                      |.+++++++|+ ||+++.++.|..++.   +++..........|. ++++++    +|+ ||+++. ...+..+| .++ 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            78899999775 778888899999996   344322223456788 999999    885 788864 35577777 555 


Q ss_pred             -cEEEeecc---CC---ccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--eecC
Q 017317          147 -VTVLASHV---NG---SRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LLDS  216 (373)
Q Consensus       147 -~~~l~~~~---~~---~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~~~  216 (373)
                       ++.+....   .+   .+...+.++++++++. +|++..                 ..+.|+.+|..+.+...  ....
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----------------~~g~i~vvd~~~~~~l~~~~i~~  322 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSIGA  322 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECTTSSSCEEEEEEC
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----------------CCCeEEEEEecCCCcceeEEecc
Confidence             34332210   11   1122567889999874 556543                 35789999987543211  2233


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCC-Ccee-ECCC-CCEEEEEecCCCchhhhcc
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP-DNIK-LAPD-GSFWIAILQLSSPGLEFVH  293 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p-~~i~-~d~d-G~lwva~~~~~~~~~~~~~  293 (373)
                      ...+.+++|+|||+++|++....+.|..+|....+..  ..+.....-.| .+.. .+++ |.+|++...+.        
T Consensus       323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~--~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d--------  392 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS--ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD--------  392 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS--------
T ss_pred             CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE--EeeccCCCCCCCCCcccCCCCCccEEEeccCCC--------
Confidence            4678999999999999999888889999987643221  11111100022 2333 3566 67888765321        


Q ss_pred             CChHHHHHHHhcchhhhhccCCCccEEEEEEC--CC------CcEEEEEeCCCCceecceeEEEEe--CCEEEEeeC-C-
Q 017317          294 TSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA--AN------GIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSL-N-  361 (373)
Q Consensus       294 ~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~--~~------g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~-~-  361 (373)
                                               +.|..++  +.      .+.++.+..+.+    .+..+..+  +.+||+++. + 
T Consensus       393 -------------------------~~V~v~d~~~~~~~~~~~~~v~~l~~~g~----~~~~v~~~pdg~~l~v~~~~~~  443 (543)
T 1nir_A          393 -------------------------GSISLIGTDPKNHPQYAWKKVAELQGQGG----GSLFIKTHPKSSHLYVDTTFNP  443 (543)
T ss_dssp             -------------------------SEEEEEECCTTTCTTTBTSEEEEEECSCS----CCCCEECCTTCCEEEECCTTCS
T ss_pred             -------------------------ceEEEEEeCCCCCchhcCeEEEEEEcCCC----CceEEEcCCCCCcEEEecCCCC
Confidence                                     1234444  31      678888875432    23334444  358999873 2 


Q ss_pred             ----CCeEEEeeCCC
Q 017317          362 ----TNFIGKLPLKA  372 (373)
Q Consensus       362 ----~~~i~~~~l~~  372 (373)
                          ++.|..+++..
T Consensus       444 ~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          444 DARISQSVAVFDLKN  458 (543)
T ss_dssp             SHHHHTCEEEEETTC
T ss_pred             CcccCceEEEEECCC
Confidence                34899888763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.16  E-value=2.3e-08  Score=94.19  Aligned_cols=229  Identities=15%  Similarity=0.065  Sum_probs=148.0

Q ss_pred             CCcceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeee------ecCccccCeEECCCCcEEEEECC-CcEEEEe-cCC
Q 017317           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKL------IGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~------~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g  146 (373)
                      ..|.++++++++.+|++. .++.|..++ .+|+......      ..+... ++++.++|++|++... +.+..++ .++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE-TISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE-EEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee-EEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            347789999988888765 567799999 4455443211      122345 7889889999887654 4577777 555


Q ss_pred             --cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceE
Q 017317          147 --VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGV  223 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi  223 (373)
                        ...+..     ....+..++++++|. +|++...                 .+.|+.+|..+++..........+.++
T Consensus       202 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~~~~  259 (433)
T 3bws_A          202 AYKATVDL-----TGKWSKILLYDPIRDLVYCSNWI-----------------SEDISVIDRKTKLEIRKTDKIGLPRGL  259 (433)
T ss_dssp             CEEEEEEC-----SSSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred             eEEEEEcC-----CCCCeeEEEEcCCCCEEEEEecC-----------------CCcEEEEECCCCcEEEEecCCCCceEE
Confidence              333321     123577899999986 5566532                 478999999888766555555568899


Q ss_pred             EEccCCCEEEEEeC-------CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCC
Q 017317          224 ALSKDEDYLVVCET-------FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTS  295 (373)
Q Consensus       224 ~~~~dg~~l~v~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~  295 (373)
                      +++++++.++++..       .++.|+.|++...+..  ...  ...+.+.+++++++|+ +|++....           
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~--~~~--~~~~~~~~~~~~~~g~~l~~~~~~~-----------  324 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI--DTI--GPPGNKRHIVSGNTENKIYVSDMCC-----------  324 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE--EEE--EEEECEEEEEECSSTTEEEEEETTT-----------
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE--eec--cCCCCcceEEECCCCCEEEEEecCC-----------
Confidence            99999998888874       3457888987643211  111  1123577899999996 67765432           


Q ss_pred             hHHHHHHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCC---------
Q 017317          296 KATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTN---------  363 (373)
Q Consensus       296 p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~---------  363 (373)
                                             +.+..++.+ ++.+..+...     ..+..+... + ..||+++...+         
T Consensus       325 -----------------------~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          325 -----------------------SKIEVYDLKEKKVQKSIPVF-----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             -----------------------TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred             -----------------------CEEEEEECCCCcEEEEecCC-----CCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence                                   235666644 5556555422     235566655 2 36888876543         


Q ss_pred             -----eEEEeeCC
Q 017317          364 -----FIGKLPLK  371 (373)
Q Consensus       364 -----~i~~~~l~  371 (373)
                           .|..+++.
T Consensus       377 g~~dg~v~~~d~~  389 (433)
T 3bws_A          377 GLVLGKVYVIDTT  389 (433)
T ss_dssp             CSSCCEEEEEETT
T ss_pred             cccceEEEEEECC
Confidence                 67777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.13  E-value=6.5e-09  Score=90.49  Aligned_cols=148  Identities=18%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             CcceEEEecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEee
Q 017317           78 GPEDVCVDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~  152 (373)
                      ..++++.+ +++||+.+ .++.++++| .+.+...-....+... |++.| .+.||+++....|..+| .+.  ...+.-
T Consensus        97 FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A           97 FAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            34778887 67999877 578899999 4554433223345567 88876 35899998766788888 454  333333


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--------------CCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------------SLF  218 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------------~~~  218 (373)
                      ...+.+...+|.|... +|+||+....                 ...|.++|++++++....+              ...
T Consensus       174 ~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          174 KLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             CCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            3355566677888876 8999998754                 3689999999998765322              123


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~  246 (373)
                      .+||||++++++.|||+.-.=.+++++.
T Consensus       236 vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             CEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            6799999999999999976545666554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.12  E-value=1.8e-08  Score=86.90  Aligned_cols=150  Identities=15%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             CcceEEEecCCCEEEEe-cCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEee
Q 017317           78 GPEDVCVDRNGVLYTAT-RDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~-~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~  152 (373)
                      ..++++.+ +++||+.+ .++.++++|. +.+...-....+.+. |++.| .++||+++....|..+| .+.  ...+..
T Consensus        66 fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           66 FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            35778887 68999777 6788999994 454433223345567 77765 35899999777788888 444  333333


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--------------CCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------------SLF  218 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------------~~~  218 (373)
                      ...+.+...+|.|... +|+||+....                 ...|.++|+.++++....+              ...
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred             ccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence            3455666677887765 8999988754                 3589999999998765322              123


Q ss_pred             CcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          219 FANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       219 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      .+||||++++++.|||+.-.=.+++++.+.
T Consensus       205 vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          205 VLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            679999999999999997655667766543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.12  E-value=4e-08  Score=89.39  Aligned_cols=192  Identities=15%  Similarity=0.073  Sum_probs=106.8

Q ss_pred             CcceEEEecCCC-EEEEe-cCCeEEEEEc-CCceEEeeeecC-------ccccCeEECCCCc-EEEEECC----------
Q 017317           78 GPEDVCVDRNGV-LYTAT-RDGWIKRLHK-NGTWENWKLIGG-------DTLLGITTTQENE-ILVCDAD----------  136 (373)
Q Consensus        78 ~P~~ia~d~~G~-l~v~~-~~g~I~~~~~-~g~~~~~~~~~~-------~p~~gl~~d~~g~-L~va~~~----------  136 (373)
                      .|.+++++++|+ +|+.. .++.|+.++. +++.........       .+. +++++++|+ ||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            689999999886 77665 6789999994 455433222222       267 999999995 6776532          


Q ss_pred             --CcEEEEe-cCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCcc-ccccccc-ccccc-cc-------------
Q 017317          137 --KGLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTK-FGLHNWG-LDLLE-AK-------------  195 (373)
Q Consensus       137 --~gl~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~-~~~~~~~-~~~~~-~~-------------  195 (373)
                        ..+..++ .++ . +.+.. ...  ...+.++++++||++|+++..-. +...... ...+. ..             
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~-~~~--~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRT-FPM--PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEE-EEC--CSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CCCeEEEEECCCccccceeee-ccC--CCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCcccee
Confidence              5677787 554 2 11111 111  12467888999999888532100 0000000 00000 00             


Q ss_pred             -------------------------------CCceEEEEeCCCCeEEEee--cCCCCcceEEEcc-CCCEEEEEeCCCCe
Q 017317          196 -------------------------------PHGKLLKYDPSLNETSILL--DSLFFANGVALSK-DEDYLVVCETFKFR  241 (373)
Q Consensus       196 -------------------------------~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~-dg~~l~v~~~~~~~  241 (373)
                                                     ....++.+|..+++...+.  .....+.++++++ |++.+|++   .+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~  276 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNR  276 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCe
Confidence                                           0001112333333332211  1122456788889 99988888   568


Q ss_pred             EEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEE
Q 017317          242 CLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIA  280 (373)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva  280 (373)
                      |++|++...+.  ...+  .....|.+++++++|+ ||++
T Consensus       277 v~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          277 LAKYDLKQRKL--IKAA--NLDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             EEEEETTTTEE--EEEE--ECSSCCCEEEECSSSSCEEEE
T ss_pred             EEEEECccCeE--EEEE--cCCCCccceEECCCCCEEEEe
Confidence            99999754321  1122  1234588899999985 7775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.09  E-value=1.1e-07  Score=83.00  Aligned_cols=198  Identities=12%  Similarity=0.127  Sum_probs=126.6

Q ss_pred             CccccCeEECCC-CcEEEE-ECCCcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccc
Q 017317          116 GDTLLGITTTQE-NEILVC-DADKGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL  191 (373)
Q Consensus       116 ~~p~~gl~~d~~-g~L~va-~~~~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~  191 (373)
                      ..+. ||+++++ +.||++ +....|++++.+|  .+.+.  ..+  ...+.+|+++++|.+|+++..            
T Consensus        27 ~~lS-Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~--l~g--~~D~EGIa~~~~g~~~vs~E~------------   89 (255)
T 3qqz_A           27 NNIS-SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP--LDF--VKDLETIEYIGDNQFVISDER------------   89 (255)
T ss_dssp             SCEE-EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE--CSS--CSSEEEEEECSTTEEEEEETT------------
T ss_pred             cCcc-eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe--cCC--CCChHHeEEeCCCEEEEEECC------------
Confidence            4566 9999975 469975 5555699999547  33331  122  245778999999999998643            


Q ss_pred             ccccCCceEEEEeCCC-CeE---EEeecCC------CCcceEEEccCCCEEEEEeCCCC-eEEEEEecCC-CCcceeEEe
Q 017317          192 LEAKPHGKLLKYDPSL-NET---SILLDSL------FFANGVALSKDEDYLVVCETFKF-RCLKYWLKGE-SKEQTEIFV  259 (373)
Q Consensus       192 ~~~~~~g~l~~~d~~~-~~~---~~~~~~~------~~~~gi~~~~dg~~l~v~~~~~~-~i~~~~~~~~-~~~~~~~~~  259 (373)
                           .++++.++... +..   ....-.+      ....|++++++++.||++..... +|+.++  +- .........
T Consensus        90 -----~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~  162 (255)
T 3qqz_A           90 -----DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISK  162 (255)
T ss_dssp             -----TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEE
T ss_pred             -----CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeec
Confidence                 35666664322 221   1111111      12379999999988999876554 777776  31 111122211


Q ss_pred             c-----C-CCCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEE
Q 017317          260 E-----N-LPGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIR  332 (373)
Q Consensus       260 ~-----~-~~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~  332 (373)
                      .     . .-.-+.++++|+ .|++|+....++                                  .++.+|.+|+++.
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~----------------------------------~L~~~d~~g~~~~  208 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR----------------------------------ALQEVTLVGEVIG  208 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT----------------------------------EEEEECTTCCEEE
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECCCC----------------------------------eEEEEcCCCCEEE
Confidence            0     1 112368899987 567888876552                                  6899999999888


Q ss_pred             EEeCCCCc-----eecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          333 KFEDPNGK-----VMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       333 ~~~~~~g~-----~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      .+.-..|.     .+....+++.+ +|+|||.+- .|.+++++-.+
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTPQS  253 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC--
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEecC
Confidence            87665442     24567888877 589999984 68999987654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.05  E-value=4.4e-08  Score=88.53  Aligned_cols=177  Identities=10%  Similarity=0.036  Sum_probs=107.2

Q ss_pred             EEEEecCCeEEEEE-cCCceEEeeeecC---ccccCeEECCCC-cEEEEECC-CcEEEEe-cCC-c-EEEeeccCCcccc
Q 017317           90 LYTATRDGWIKRLH-KNGTWENWKLIGG---DTLLGITTTQEN-EILVCDAD-KGLLKVT-EEG-V-TVLASHVNGSRIN  160 (373)
Q Consensus        90 l~v~~~~g~I~~~~-~~g~~~~~~~~~~---~p~~gl~~d~~g-~L~va~~~-~gl~~~~-~~g-~-~~l~~~~~~~~~~  160 (373)
                      ++++..++.|..++ .+++.........   .|. +++++++| .+|++... ..|..++ .++ . ..+.....+....
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            44666788999999 4555443333344   688 99999999 47887654 4578888 566 3 2232111111112


Q ss_pred             ccceeEEcCCC-cEEEEeCCccccccccccccccc-cCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC
Q 017317          161 LADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEA-KPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       161 ~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~-~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .+.++++++|| .+|+++.......       .+. ...+.|+.+|.++++..........+.++++++||+.+|++   
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~-------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLEL-------THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL---  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECS-------SCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE---
T ss_pred             cccceEECCCCCEEEEEeccccccc-------ccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe---
Confidence            57789999999 6888752100000       000 02378999999887765544445668899999999989998   


Q ss_pred             CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEE
Q 017317          239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       239 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~  281 (373)
                      ++.|+.+++.+.+.  ...+.  ....+..+.++++|. +|++.
T Consensus       153 ~~~i~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          153 GRDLHVMDPEAGTL--VEDKP--IQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             SSSEEEEETTTTEE--EEEEC--STTTTTTTBCCCBCCCCCCCC
T ss_pred             CCeEEEEECCCCcE--eeeee--ccccCCCceeCCCccEEeeec
Confidence            35699998754321  11111  112123446677775 55543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.04  E-value=1.5e-07  Score=92.32  Aligned_cols=187  Identities=14%  Similarity=0.121  Sum_probs=117.9

Q ss_pred             CCcceEEEecCCC-EEEEecCCeEEEEEc---CCceEEeeeecCccccCeEEC----CCCc-EEEEECC-CcEEEEe-cC
Q 017317           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHK---NGTWENWKLIGGDTLLGITTT----QENE-ILVCDAD-KGLLKVT-EE  145 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~~g~I~~~~~---~g~~~~~~~~~~~p~~gl~~d----~~g~-L~va~~~-~gl~~~~-~~  145 (373)
                      ..|.+++++++|+ +|+++.++.|..+|.   +++.......+..|. +++++    +||+ +||++.. ..+..+| .+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            4688999999875 788888999999995   444433333456788 99999    5884 8888654 4567777 44


Q ss_pred             C--cEEEeecc---CC---ccccccceeEEcCCCcE-EEEeCCccccccccccccccccCCceEEEEeCCCCeEEE--ee
Q 017317          146 G--VTVLASHV---NG---SRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI--LL  214 (373)
Q Consensus       146 g--~~~l~~~~---~~---~~~~~~~~l~~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~--~~  214 (373)
                      .  ++.+....   .+   .+...+.++...+++.. +++..                 ..|.|+.+|..+.+...  ..
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-----------------~~g~v~~vd~~~~~~~~v~~i  338 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------ETGKILLVDYTDLNNLKTTEI  338 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEETTCSSEEEEEEE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec-----------------CCCeEEEEecCCCccceeeee
Confidence            4  33332211   11   01123456777777654 44432                 35899999976543211  12


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe-cCCCCCC-Ccee-ECCC-CCEEEEEec
Q 017317          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV-ENLPGGP-DNIK-LAPD-GSFWIAILQ  283 (373)
Q Consensus       215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~g~p-~~i~-~d~d-G~lwva~~~  283 (373)
                      ....++.++.|++||+++|++....+.|..+|....+.... .-. ...+ .| .+.. ++++ |.+|++...
T Consensus       339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~-i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~  409 (567)
T 1qks_A          339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTP-HPGRGANFVHPTFGPVWATSHM  409 (567)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSB-CCTTCEEEEETTTEEEEEEEBS
T ss_pred             eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE-EeccCcCC-CCccceeeECCCCCcEEEeCCC
Confidence            33457889999999999999998899999999764332111 111 1111 22 3444 4676 679987653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.04  E-value=7.1e-09  Score=98.85  Aligned_cols=170  Identities=15%  Similarity=0.120  Sum_probs=107.7

Q ss_pred             ceEEeeeecCccccCeEECCCCcEEEEECCCc-EEEEe-cCC-cEEEeeccCC----ccccccceeEEcC----CCcEEE
Q 017317          107 TWENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVT-EEG-VTVLASHVNG----SRINLADDLIAAT----DGSIYF  175 (373)
Q Consensus       107 ~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~-~~g-~~~l~~~~~~----~~~~~~~~l~~~~----dG~l~v  175 (373)
                      +++.++.....|. +|+++++|+|||++...+ |++++ .+| .+.+......    .....+.+|+++|    +|.|||
T Consensus        18 ~~~~~a~~l~~P~-~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            4556666667899 999999999999998754 88888 457 5544332111    1234567999999    689999


Q ss_pred             EeCCccccccccccccccccCCceEEEEeCCCC--e---EEEeec-----CCCCcceEEEccCCCEEEEEeCC-------
Q 017317          176 SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--E---TSILLD-----SLFFANGVALSKDEDYLVVCETF-------  238 (373)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~---~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~~-------  238 (373)
                      +.+...-+..    . .......+|+|++.+.+  +   .+.+..     ..+.+++|+|++||. ||++...       
T Consensus        97 ~~s~~~~~~~----~-~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           97 SGTFKNPKST----D-KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (454)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEeccccCCC----c-cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcc
Confidence            9742000000    0 00001247888864321  2   223322     245678999999997 9998532       


Q ss_pred             -------------------------CCeEEEEEecCCCC-c-------ceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          239 -------------------------KFRCLKYWLKGESK-E-------QTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       239 -------------------------~~~i~~~~~~~~~~-~-------~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                                               ..+|+|++.+|.-. .       ..+++... ...|.++++|++|+||++..+.
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G-~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG-HRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC-CSEEEEEEECTTSCEEEEEECS
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEEC-CCCcceEEECCCCCEEEEecCC
Confidence                                     35799998765310 0       23445422 2358899999999999999864

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.01  E-value=4.8e-07  Score=83.29  Aligned_cols=229  Identities=10%  Similarity=0.037  Sum_probs=145.6

Q ss_pred             CCcceEEEe-cCCCEEEEec---C---CeEEEEEc---------CCce-EEeee--ec---CccccCeEECCCCcEEEEE
Q 017317           77 NGPEDVCVD-RNGVLYTATR---D---GWIKRLHK---------NGTW-ENWKL--IG---GDTLLGITTTQENEILVCD  134 (373)
Q Consensus        77 ~~P~~ia~d-~~G~l~v~~~---~---g~I~~~~~---------~g~~-~~~~~--~~---~~p~~gl~~d~~g~L~va~  134 (373)
                      .-|.++++| .+|++|++..   .   -.+..++.         ++.. +.+..  .+   -.+. ++.+|+.|+|||.|
T Consensus        26 ~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rLWVLD  104 (381)
T 3q6k_A           26 MISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRLWVVD  104 (381)
T ss_dssp             CCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEEEEEE
T ss_pred             cceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcEEEEe
Confidence            348889995 7999999872   2   24455552         2244 55433  12   2345 88899999999998


Q ss_pred             CCC----------------cEEEEe-c-C--C-cEEEe-eccCCccccccceeEEc-C-------CCcEEEEeCCccccc
Q 017317          135 ADK----------------GLLKVT-E-E--G-VTVLA-SHVNGSRINLADDLIAA-T-------DGSIYFSVASTKFGL  184 (373)
Q Consensus       135 ~~~----------------gl~~~~-~-~--g-~~~l~-~~~~~~~~~~~~~l~~~-~-------dG~l~v~~~~~~~~~  184 (373)
                      .+.                .|+.+| . +  . ++.+. ....-.+..+.++|++| .       ++.+|++|..     
T Consensus       105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~-----  179 (381)
T 3q6k_A          105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL-----  179 (381)
T ss_dssp             CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT-----
T ss_pred             CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC-----
Confidence            641                267777 4 3  3 22221 11111223567899999 2       4579999974     


Q ss_pred             cccccccccccCCceEEEEeCCCCeEEEeecC-------------------CCCcceEEEccC----CCEEEEEeCCCCe
Q 017317          185 HNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------------------LFFANGVALSKD----EDYLVVCETFKFR  241 (373)
Q Consensus       185 ~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-------------------~~~~~gi~~~~d----g~~l~v~~~~~~~  241 (373)
                                  ..+|+.||..+++...+.+.                   .....||+++|+    ++.||+.-....+
T Consensus       180 ------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~  247 (381)
T 3q6k_A          180 ------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIK  247 (381)
T ss_dssp             ------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSE
T ss_pred             ------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCc
Confidence                        35788888776665444321                   013468999998    8899999988889


Q ss_pred             EEEEEe---cCCC-CcceeEEecCCCCCCC--ceeEC-CCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccC
Q 017317          242 CLKYWL---KGES-KEQTEIFVENLPGGPD--NIKLA-PDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAP  314 (373)
Q Consensus       242 i~~~~~---~~~~-~~~~~~~~~~~~g~p~--~i~~d-~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  314 (373)
                      +++...   ..+. ...++.+.+ .....+  ++++| .+|+||++....                              
T Consensus       248 ly~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~------------------------------  296 (381)
T 3q6k_A          248 VYSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANT------------------------------  296 (381)
T ss_dssp             EEEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSS------------------------------
T ss_pred             EEEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccC------------------------------
Confidence            998863   2222 233333332 211234  45776 899999998764                              


Q ss_pred             CCccEEEEEECCCC------cEEEEEeCCCCceecceeEEEEe-CCEEEEeeCC
Q 017317          315 LHKKAAVVNVAANG------IVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLN  361 (373)
Q Consensus       315 ~~~~g~v~~~~~~g------~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~  361 (373)
                          ..|.++++++      ......+++ .  +.++..+..+ +|+||+-+..
T Consensus       297 ----~aI~~w~~~~~~~~~~n~~~l~~d~-~--l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          297 ----KQVSCWNTQKMPLRMKNTDVVYTSS-R--FVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             ----SEEEEEETTSCSBCGGGEEEEEECT-T--CCSEEEEEECTTSCEEEEECS
T ss_pred             ----CeEEEEeCCCCccccCceEEEEECC-C--ccccCeEEECCCCeEEEEECc
Confidence                2478888887      234445665 2  5688888875 6899998854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.00  E-value=3.9e-07  Score=89.24  Aligned_cols=229  Identities=10%  Similarity=-0.029  Sum_probs=143.5

Q ss_pred             EecCCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-c--CCcEEEeeccCCc
Q 017317           84 VDRNGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-E--EGVTVLASHVNGS  157 (373)
Q Consensus        84 ~d~~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~--~g~~~l~~~~~~~  157 (373)
                      .|+++.+|+.. .++.|..+| .+++..........|+ ++++++||+ +|+++....+..+| .  ++ +.+.....| 
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-  239 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-  239 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC-
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC-
Confidence            45566788766 678999999 4555544334456788 999999996 89988766788888 4  33 222222222 


Q ss_pred             cccccceeEEc----CCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC------------CCCc
Q 017317          158 RINLADDLIAA----TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFA  220 (373)
Q Consensus       158 ~~~~~~~l~~~----~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------~~~~  220 (373)
                        ..|..++++    ||| .+|+++..                 .+.+..+|..+.+......-            ....
T Consensus       240 --~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          240 --SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             --CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence              357899999    699 58888643                 46788899887765432211            0123


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHH
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATK  299 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~  299 (373)
                      .++..++++..++++....+.|..++....+.......  ....++.++.+|++|++ |++....               
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~s---------------  363 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANAR---------------  363 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGG---------------
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCC---------------
Confidence            46788888887888877778999998654321111111  12336778899999985 5665443               


Q ss_pred             HHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeE--EEEe-CCEEEEee-CCCCeEEEeeCC
Q 017317          300 HLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTS--ALEF-DDHLYLGS-LNTNFIGKLPLK  371 (373)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~--~~~~-~g~L~vgs-~~~~~i~~~~l~  371 (373)
                                         +.+..+| .+++++..+.. .|..-+....  +... .+.+|+.+ +..+.|..++.+
T Consensus       364 -------------------n~V~ViD~~t~kl~~~i~v-gg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          364 -------------------NKLVVIDTKEGKLVAIEDT-GGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             -------------------TEEEEEETTTTEEEEEEEC-SSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             -------------------CeEEEEECCCCcEEEEEec-cCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence                               1356677 45666665543 0221111112  2222 36899866 455889998865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.98  E-value=1.4e-07  Score=82.14  Aligned_cols=155  Identities=13%  Similarity=0.106  Sum_probs=107.1

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEEEEeC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      .+..+|.++ +|.||++++.               .....|.++|++++++.....-  -.+..|+++  +++.||+++.
T Consensus        43 ~ftqGL~~~-~~~LyestG~---------------~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw  104 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGL---------------NGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTW  104 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEE---------------TTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEES
T ss_pred             cccceEEEE-CCEEEEECCC---------------CCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEe
Confidence            356789998 7899999754               1234799999999987654332  233355555  5678999998


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCc
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK  317 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  317 (373)
                      .++.+++||.+..+  ....+.  .++...+++.| .++||++....                                 
T Consensus       105 ~~~~v~v~D~~t~~--~~~ti~--~~~eG~glt~d-g~~L~~SdGs~---------------------------------  146 (262)
T 3nol_A          105 KNGLGFVWNIRNLR--QVRSFN--YDGEGWGLTHN-DQYLIMSDGTP---------------------------------  146 (262)
T ss_dssp             SSSEEEEEETTTCC--EEEEEE--CSSCCCCEEEC-SSCEEECCSSS---------------------------------
T ss_pred             eCCEEEEEECccCc--EEEEEE--CCCCceEEecC-CCEEEEECCCC---------------------------------
Confidence            89999999965432  222332  23345667755 24788886422                                 


Q ss_pred             cEEEEEECCC-CcEEEEEeCC-CCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          318 KAAVVNVAAN-GIVIRKFEDP-NGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       318 ~g~v~~~~~~-g~~~~~~~~~-~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                        .+..+|++ .+++..+... +|..+..+..+...+|+||+..+.++.|.++++..
T Consensus       147 --~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~t  201 (262)
T 3nol_A          147 --VLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPET  201 (262)
T ss_dssp             --EEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTT
T ss_pred             --eEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCC
Confidence              47889975 6777777653 34545555566667899999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.98  E-value=2.9e-06  Score=76.10  Aligned_cols=183  Identities=16%  Similarity=0.164  Sum_probs=113.9

Q ss_pred             CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeee-ecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--
Q 017317           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--  146 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--  146 (373)
                      |.-....++++.++|.+. +++.+|.|..++ .+++...... ...... .+++.++|+++++ ...+.+..++ .++  
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence            434556789999988765 677889999998 4565443322 233445 8899999976654 4444466667 555  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~  225 (373)
                      ...+...     ...+..+++.+++.+.++.+.                 .+.|..+|..+++....... ......+++
T Consensus       100 ~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A          100 LKTLKGH-----SNYVFCCNFNPQSNLIVSGSF-----------------DESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             EEEEECC-----SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEEcCC-----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            3333211     134678899999987776442                 46788899877765443333 233467899


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +++++.++.+ ..++.|..|++....  ....+..........++++++|++.++..
T Consensus       158 ~~~~~~l~~~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          158 NRDGSLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             CTTSSEEEEE-ETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCEEEEE-eCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            9999955554 456678888865432  11222211112234578899998666544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.97  E-value=1.7e-07  Score=88.15  Aligned_cols=236  Identities=13%  Similarity=-0.025  Sum_probs=127.8

Q ss_pred             CCEEEEecC-----CeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC----------CCcEEEEe-cCC--c
Q 017317           88 GVLYTATRD-----GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA----------DKGLLKVT-EEG--V  147 (373)
Q Consensus        88 G~l~v~~~~-----g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~----------~~gl~~~~-~~g--~  147 (373)
                      .++|+.+..     +.|.++| .++++......+..|  ++++++||+ |||++.          .+.|..+| .++  .
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            468987753     6899999 455544333344455  899999995 999973          23477788 555  3


Q ss_pred             EEEeec-cCC-ccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC----CCCc
Q 017317          148 TVLASH-VNG-SRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----LFFA  220 (373)
Q Consensus       148 ~~l~~~-~~~-~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----~~~~  220 (373)
                      ..+... ... .....|..+++++|| .+||++..                ..+.|..+|..++++.....-    ...|
T Consensus       163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~~p  226 (426)
T 3c75_H          163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHIFP  226 (426)
T ss_dssp             EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceeecc
Confidence            333211 000 012468899999999 69998642                124555556555443221110    0011


Q ss_pred             c-----------------------------------------eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe
Q 017317          221 N-----------------------------------------GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV  259 (373)
Q Consensus       221 ~-----------------------------------------gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  259 (373)
                      .                                         .+.++++++.+|+... .+.++.++..+........+.
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~  305 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIE  305 (426)
T ss_dssp             EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEE
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeee
Confidence            1                                         1234555555555543 345666665432211000000


Q ss_pred             ---c---CCCCCCCc---eeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCC
Q 017317          260 ---E---NLPGGPDN---IKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANG  328 (373)
Q Consensus       260 ---~---~~~g~p~~---i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g  328 (373)
                         .   .....|.+   ++++++| ++||+........                         .....+.+..+| ...
T Consensus       306 ~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt-------------------------hk~~s~~VsVID~~T~  360 (426)
T 3c75_H          306 ALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK-------------------------HKAASRFVVVLNAETG  360 (426)
T ss_dssp             SSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC-------------------------TTSCEEEEEEEETTTC
T ss_pred             eccccccccccccCCceeeEEcCCCCEEEEEeccccccc-------------------------ccCCCCEEEEEECCCC
Confidence               0   00012333   7888876 5788864320000                         001124577888 457


Q ss_pred             cEEEEEeCCCCceecceeEEEEe--CC-EEEEeeCCCCeEEEeeCCC
Q 017317          329 IVIRKFEDPNGKVMSFVTSALEF--DD-HLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       329 ~~~~~~~~~~g~~~~~~~~~~~~--~g-~L~vgs~~~~~i~~~~l~~  372 (373)
                      +++..+....     .+..+...  +. .||+.+..++.|+++++..
T Consensus       361 kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          361 ERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             CEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            7887775322     24555554  34 6888888899999999763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.97  E-value=1.4e-07  Score=85.79  Aligned_cols=158  Identities=11%  Similarity=0.001  Sum_probs=93.8

Q ss_pred             eEEEecCCCEEEE-ecCCeEEEEE-cCCceEEeeeecC--ccccCeEECCCCc-EEEEECC-CcEEEEe-cCC-cE-EEe
Q 017317           81 DVCVDRNGVLYTA-TRDGWIKRLH-KNGTWENWKLIGG--DTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-VT-VLA  151 (373)
Q Consensus        81 ~ia~d~~G~l~v~-~~~g~I~~~~-~~g~~~~~~~~~~--~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g-~~-~l~  151 (373)
                      ++++.+++.+|+. ..++.|..++ .+++.........  .+. +++++++|+ +|++... ..|..++ .++ .. .+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            3455668888854 4789999999 4555443333334  578 999999996 7887654 4577888 566 32 221


Q ss_pred             ec-cCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE---EeecCCCCcceEEEc
Q 017317          152 SH-VNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDSLFFANGVALS  226 (373)
Q Consensus       152 ~~-~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~---~~~~~~~~~~gi~~~  226 (373)
                      .. ..+.....+.++++++||+ +|++..........      .....+.|+.+|..+++..   ........+.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH------YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC------EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccc------cccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence            11 0111123478999999995 67665210000000      0011368999998764321   112223356788899


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecC
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +||+ +|++.   ..|++++...
T Consensus       157 ~dg~-l~~~~---~~i~~~d~~~  175 (349)
T 1jmx_B          157 DDGS-LYVAG---PDIYKMDVKT  175 (349)
T ss_dssp             TTSC-EEEES---SSEEEECTTT
T ss_pred             CCCc-EEEcc---CcEEEEeCCC
Confidence            9999 88863   2388887643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.96  E-value=4e-07  Score=78.47  Aligned_cols=155  Identities=13%  Similarity=0.133  Sum_probs=108.6

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEEEEeC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      .+..+|.++. +.||++++.               .....|.++|++++++.....-  ..+..|+++  +++.||+.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw   82 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTW   82 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEES
T ss_pred             cccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEe
Confidence            4667899985 899999764               1235899999999987654432  333455555  5678999999


Q ss_pred             CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCc
Q 017317          238 FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHK  317 (373)
Q Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  317 (373)
                      .++.+++||.+..  .....+.  .++.+.+++.| .++||++....                                 
T Consensus        83 ~~~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~d-g~~L~vSdgs~---------------------------------  124 (243)
T 3mbr_X           83 RNHEGFVYDLATL--TPRARFR--YPGEGWALTSD-DSHLYMSDGTA---------------------------------  124 (243)
T ss_dssp             SSSEEEEEETTTT--EEEEEEE--CSSCCCEEEEC-SSCEEEECSSS---------------------------------
T ss_pred             eCCEEEEEECCcC--cEEEEEe--CCCCceEEeeC-CCEEEEECCCC---------------------------------
Confidence            8999999996432  2222332  23455677755 35799997432                                 


Q ss_pred             cEEEEEECCC-CcEEEEEeC-CCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          318 KAAVVNVAAN-GIVIRKFED-PNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       318 ~g~v~~~~~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                        .+..+|++ .+.+..+.. .++..+..+..+...+|+||+....+|.|.++++.+
T Consensus       125 --~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          125 --VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             --EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTT
T ss_pred             --eEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCC
Confidence              47888965 567666654 244555566677777999999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.95  E-value=2.7e-06  Score=76.51  Aligned_cols=225  Identities=11%  Similarity=0.017  Sum_probs=138.2

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEc-CCceE---EeeeecCccccCeEECCCCcE-EEEECCCcEEEEe-cCC--cE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE---NWKLIGGDTLLGITTTQENEI-LVCDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~~---~~~~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g--~~  148 (373)
                      ...++++.++|... ++..+|.|..++. +++..   .+........ .+++.+++++ +++...+.+..++ .++  ..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            35678888888744 7778899999983 34321   2222233455 8899998865 4555555677788 555  23


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      .+..     ....+..+++.++|...++.+.                 .+.|..+|..+++.............++++++
T Consensus       178 ~~~~-----~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          178 QFQG-----HTDGASCIDISNDGTKLWTGGL-----------------DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EECC-----CSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             eeec-----ccCceEEEEECCCCCEEEEEec-----------------CCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            2211     1235678999999976655432                 47899999887765544444445678999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      ++.++++. .++.+..|++.....   ..+. ...+....++++++|++.++....                        
T Consensus       236 ~~~l~~~~-~~~~i~~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~d------------------------  286 (337)
T 1gxr_A          236 GEWLAVGM-ESSNVEVLHVNKPDK---YQLH-LHESCVLSLKFAYCGKWFVSTGKD------------------------  286 (337)
T ss_dssp             SSEEEEEE-TTSCEEEEETTSSCE---EEEC-CCSSCEEEEEECTTSSEEEEEETT------------------------
T ss_pred             CCEEEEEc-CCCcEEEEECCCCCe---EEEc-CCccceeEEEECCCCCEEEEecCC------------------------
Confidence            99666665 456799998765432   1221 223446678899999866654432                        


Q ss_pred             hhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeC
Q 017317          309 IKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l  370 (373)
                                +.+..++ ..++.+..... .    ..+..+... + ..|..++. ...|..+++
T Consensus       287 ----------g~i~~~~~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~-dg~i~iw~~  335 (337)
T 1gxr_A          287 ----------NLLNAWRTPYGASIFQSKE-S----SSVLSCDISVDDKYIVTGSG-DKKATVYEV  335 (337)
T ss_dssp             ----------SEEEEEETTTCCEEEEEEC-S----SCEEEEEECTTSCEEEEEET-TSCEEEEEE
T ss_pred             ----------CcEEEEECCCCeEEEEecC-C----CcEEEEEECCCCCEEEEecC-CCeEEEEEE
Confidence                      2456666 34555544332 1    246666665 3 35666664 444666554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.94  E-value=2.5e-07  Score=87.03  Aligned_cols=206  Identities=13%  Similarity=0.071  Sum_probs=116.1

Q ss_pred             eeEeccCCcCCcceEEEecCCC-EEEEec----------CCeEEEEE-cCCceEEeeee--------cCccccCeEECCC
Q 017317           68 VTRLGEGILNGPEDVCVDRNGV-LYTATR----------DGWIKRLH-KNGTWENWKLI--------GGDTLLGITTTQE  127 (373)
Q Consensus        68 ~~~~~~g~~~~P~~ia~d~~G~-l~v~~~----------~g~I~~~~-~~g~~~~~~~~--------~~~p~~gl~~d~~  127 (373)
                      +.++..|  ..| .+++++||+ ||+++.          ++.|.++| .+++.......        ...|. ++++++|
T Consensus       112 v~~I~vG--~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spD  187 (426)
T 3c75_H          112 LGMTDGG--FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPD  187 (426)
T ss_dssp             EEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTT
T ss_pred             EEEEECC--CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            3344445  458 999999764 888762          56799998 45554322222        24689 9999999


Q ss_pred             C-cEEEEEC--CCcEEEEe-cCC--cEEEeeccCCccccccc----eeEEcCCCcEEEEeCCc-c--------cccccc-
Q 017317          128 N-EILVCDA--DKGLLKVT-EEG--VTVLASHVNGSRINLAD----DLIAATDGSIYFSVAST-K--------FGLHNW-  187 (373)
Q Consensus       128 g-~L~va~~--~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~----~l~~~~dG~l~v~~~~~-~--------~~~~~~-  187 (373)
                      | .|||++.  .+.+..+| .++  ...+..  .+.....+.    -+++.+||++.+.+... +        +..... 
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence            9 5999874  34588888 555  222221  111011122    25667788654333221 1        000000 


Q ss_pred             ----------ccccccccCCceEEEEeCCCCeEEEeec----------CCCCcce---EEEccCCCEEEEEeCC------
Q 017317          188 ----------GLDLLEAKPHGKLLKYDPSLNETSILLD----------SLFFANG---VALSKDEDYLVVCETF------  238 (373)
Q Consensus       188 ----------~~~~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~~g---i~~~~dg~~l~v~~~~------  238 (373)
                                ...+......+.|+.+|..++.......          ....|.|   +++++|++++||+...      
T Consensus       266 ~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth  345 (426)
T 3c75_H          266 LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH  345 (426)
T ss_dssp             BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred             eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence                      0001111123567777765444332211          0112444   8999999999998642      


Q ss_pred             ---CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEec
Q 017317          239 ---KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (373)
Q Consensus       239 ---~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~  283 (373)
                         .+.|..+|....+..  ..+  ..+..|.++++++||+ +|+.++.
T Consensus       346 k~~s~~VsVID~~T~kvv--~~I--~vg~~P~gia~spDg~~~lyv~n~  390 (426)
T 3c75_H          346 KAASRFVVVLNAETGERI--NKI--ELGHEIDSINVSQDAEPLLYALSA  390 (426)
T ss_dssp             TSCEEEEEEEETTTCCEE--EEE--EEEEEECEEEECCSSSCEEEEEET
T ss_pred             cCCCCEEEEEECCCCeEE--EEE--ECCCCcCeEEEccCCCEEEEEEcC
Confidence               347999996543321  111  1233699999999998 6666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.94  E-value=5.3e-08  Score=87.48  Aligned_cols=184  Identities=9%  Similarity=0.049  Sum_probs=115.2

Q ss_pred             CcceEEE---ecCCCEEEEec--------------CCeEEEEEcC----CceEEeeee--------------cCccccCe
Q 017317           78 GPEDVCV---DRNGVLYTATR--------------DGWIKRLHKN----GTWENWKLI--------------GGDTLLGI  122 (373)
Q Consensus        78 ~P~~ia~---d~~G~l~v~~~--------------~g~I~~~~~~----g~~~~~~~~--------------~~~p~~gl  122 (373)
                      .|.+|.+   |++|+||+...              ...|+++|.+    ++.......              ...++ ++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n-Dv  142 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV-QS  142 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE-EE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc-ee
Confidence            4678999   78999997332              4679999954    655433321              12467 99


Q ss_pred             EECCCCcEEEEEC-C-CcEEEEecCC--cEEEeecc-CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317          123 TTTQENEILVCDA-D-KGLLKVTEEG--VTVLASHV-NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       123 ~~d~~g~L~va~~-~-~gl~~~~~~g--~~~l~~~~-~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                      ++|++|+.||++. . ..|++++++|  ...+.... .......+++|++.|+|++++...+                 .
T Consensus       143 avD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-----------------~  205 (334)
T 2p9w_A          143 AQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-----------------P  205 (334)
T ss_dssp             EECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-----------------S
T ss_pred             EECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-----------------C
Confidence            9999999999654 3 4599999777  34333221 1223346889999999975554321                 4


Q ss_pred             ceEEEEeCCCCeE-EEeec------CCCCcceE-EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC--CCC
Q 017317          198 GKLLKYDPSLNET-SILLD------SLFFANGV-ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG--GPD  267 (373)
Q Consensus       198 g~l~~~d~~~~~~-~~~~~------~~~~~~gi-~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g--~p~  267 (373)
                      |+|+++|..+... ..-..      .+..+.++ ....+|+.++|++..++.+.....++  -...+.... .++  .+.
T Consensus       206 g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg--W~sa~~~g~-~~~~~~~~  282 (334)
T 2p9w_A          206 RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN--WKSANIKKT-KRSELQNS  282 (334)
T ss_dssp             SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST--TSEEEEEEE-ECGGGGSS
T ss_pred             CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC--cceeEEeee-ecCccccC
Confidence            8899999763222 01111      35567885 55668887799887665444444333  222222221 122  167


Q ss_pred             ceeEC------CCCCEEEEEe
Q 017317          268 NIKLA------PDGSFWIAIL  282 (373)
Q Consensus       268 ~i~~d------~dG~lwva~~  282 (373)
                      +++.+      .++++|+...
T Consensus       283 g~tt~t~~~~~~~~~iYvv~~  303 (334)
T 2p9w_A          283 GFTAVADYYQGSEQGLYAVSA  303 (334)
T ss_dssp             CEEEEEEEEETTEEEEEEEEC
T ss_pred             ceeEEEEeccccCCeEEEEee
Confidence            77766      6789999874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.92  E-value=2.5e-07  Score=86.58  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=112.4

Q ss_pred             cCCcceEEEecCCCEEEEe-c------CCeEEEEEc-CCceEEeeeecCc----cccCeEECCCCcEEEEEC--------
Q 017317           76 LNGPEDVCVDRNGVLYTAT-R------DGWIKRLHK-NGTWENWKLIGGD----TLLGITTTQENEILVCDA--------  135 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~-~------~g~I~~~~~-~g~~~~~~~~~~~----p~~gl~~d~~g~L~va~~--------  135 (373)
                      ...|..+...++| ||+.. .      .|+|..+|. ++++.........    +. .+.+.++++.+++..        
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            4579999999999 88754 2      278999994 4554332222222    33 466788888666542        


Q ss_pred             ------------CCcEEEEe-cCC--cEEEeeccCCccccccceeEE--cCCC-cEEEEeCCccccccccccccccccCC
Q 017317          136 ------------DKGLLKVT-EEG--VTVLASHVNGSRINLADDLIA--ATDG-SIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       136 ------------~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~--~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                                  ...|..++ .++  .+.+.   .+.....|..|.+  +|+| .+|++..-            .....+
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~---vg~~g~~P~~i~f~~~Pdg~~aYV~~e~------------~~~~Ls  279 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT---LGEENRMALELRPLHDPTKLMGFINMVV------------SLKDLS  279 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEE---SCTTEEEEEEEEECSSTTCCEEEEEEEE------------ETTTCC
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEe---cCCCCCccceeEeeECCCCCEEEEEEee------------eccCCC
Confidence                        35677887 555  22222   1212234666666  8998 57887530            000012


Q ss_pred             ceEEEEeCCCCeEEEee-----c-----C-----------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcc-e
Q 017317          198 GKLLKYDPSLNETSILL-----D-----S-----------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ-T  255 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~-----~-----~-----------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-~  255 (373)
                      +.|+++..+.++.+...     .     .           ...|.+|.+++||++|||++.+.+.|..|++......+ .
T Consensus       280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv  359 (462)
T 2ece_A          280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLT  359 (462)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred             ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            45544332234332111     0     0           24578999999999999999999999999986332111 1


Q ss_pred             eEE-ec------------CCCCCCCceeECCCCC-EEEEE
Q 017317          256 EIF-VE------------NLPGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       256 ~~~-~~------------~~~g~p~~i~~d~dG~-lwva~  281 (373)
                      ... ..            .+.+.|.++++++||+ ||++.
T Consensus       360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            111 11            1123699999999996 66665

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.91  E-value=1.2e-05  Score=72.77  Aligned_cols=232  Identities=14%  Similarity=0.072  Sum_probs=141.2

Q ss_pred             CCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe-cCC-c
Q 017317           74 GILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-V  147 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g-~  147 (373)
                      |.-..-.++++.+++.+. .++.++.|..++ .+++. ..+........ .+++.++|+.+++... +.+..++ +++ .
T Consensus        78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred             cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence            333445667788877665 667899999999 45543 33333334456 8999999986665443 4456666 555 2


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEc
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALS  226 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~  226 (373)
                      ......    ....+..+++.|+|++.++.+.                 .+.|..+|..+++......+. .....++|+
T Consensus       157 ~~~~~~----~~~~v~~~~~spdg~~lasg~~-----------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  215 (321)
T 3ow8_A          157 EYSLDT----RGKFILSIAYSPDGKYLASGAI-----------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFS  215 (321)
T ss_dssp             EEEEEC----SSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCCCEEEEC
T ss_pred             eEEecC----CCceEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCcEEEEEcccCCceeEEEEc
Confidence            221111    1134678999999987666432                 477888998877755444433 335789999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcc
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFP  306 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~  306 (373)
                      |+++ ++++...++.|..|++.....  ...+. .-.+....+++.++|.+.++....                      
T Consensus       216 pd~~-~l~s~s~dg~i~iwd~~~~~~--~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D----------------------  269 (321)
T 3ow8_A          216 PDSQ-LLVTASDDGYIKIYDVQHANL--AGTLS-GHASWVLNVAFCPDDTHFVSSSSD----------------------  269 (321)
T ss_dssp             TTSC-EEEEECTTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEETT----------------------
T ss_pred             CCCC-EEEEEcCCCeEEEEECCCcce--eEEEc-CCCCceEEEEECCCCCEEEEEeCC----------------------
Confidence            9998 555555677888888754321  11221 122335568889999876654432                      


Q ss_pred             hhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeCCCCeEEEeeC
Q 017317          307 KLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       307 ~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~~~~~i~~~~l  370 (373)
                                  +.+..+| .+++.+..+....    ..+..+.... + .|..++. ...|...+.
T Consensus       270 ------------~~v~iwd~~~~~~~~~~~~h~----~~v~~v~~s~~g~~l~s~~~-d~~i~vwd~  319 (321)
T 3ow8_A          270 ------------KSVKVWDVGTRTCVHTFFDHQ----DQVWGVKYNGNGSKIVSVGD-DQEIHIYDC  319 (321)
T ss_dssp             ------------SCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEET-TCCEEEEEC
T ss_pred             ------------CcEEEEeCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEEEeC-CCeEEEEeC
Confidence                        1255556 3567777775443    3467777763 3 4555554 444666654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.90  E-value=1.6e-06  Score=84.63  Aligned_cols=217  Identities=15%  Similarity=0.135  Sum_probs=136.3

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEcCCceE-EeeeecCccccCeEECCCCcEEE-EECCCcEEEEecCC--cEEEe
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWE-NWKLIGGDTLLGITTTQENEILV-CDADKGLLKVTEEG--VTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~~~g--~~~l~  151 (373)
                      ....++++.++|... ++..+|.|..++.+++.. .+........ ++++.++|+.++ +...+.+..++.++  .+.+.
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~  423 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  423 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEec
Confidence            345678899988766 677889898888776543 2322234456 899999997555 44444455566545  33332


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCE
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~  231 (373)
                      ..     ...+.++++.||+.+.++.+.                 .+.|..+|..+.....+.........++|+||++.
T Consensus       424 ~~-----~~~v~~~~~s~d~~~l~~~~~-----------------d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          424 GH-----SSSVWGVAFSPDDQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             CC-----SSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             CC-----CCCeEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            21     124678999999987666432                 46788888765544444433445578999999995


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhh
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKL  311 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  311 (373)
                      |..+ ..+..|..++.++..   ...+. .-......++++++|++.++....                           
T Consensus       482 las~-~~d~~i~iw~~~~~~---~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d---------------------------  529 (577)
T 2ymu_A          482 IASA-SDDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQTIASASDD---------------------------  529 (577)
T ss_dssp             EEEE-ETTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSSCEEEEETT---------------------------
T ss_pred             EEEE-eCCCEEEEEcCCCCE---EEEEe-CCCCCEEEEEEcCCCCEEEEEECc---------------------------
Confidence            5544 456678888755431   22222 112335668899999866554332                           


Q ss_pred             ccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCE-EEEee
Q 017317          312 VAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDH-LYLGS  359 (373)
Q Consensus       312 ~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~-L~vgs  359 (373)
                             +.|..+|.+|+.+..+....    ..++.+.+. +++ |.-++
T Consensus       530 -------g~v~lwd~~~~~~~~~~~h~----~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          530 -------KTVKLWNRNGQLLQTLTGHS----SSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             -------SEEEEECTTSCEEEEEECCS----SCEEEEEECTTSSCEEEEE
T ss_pred             -------CEEEEEeCCCCEEEEEcCCC----CCEEEEEEcCCCCEEEEEe
Confidence                   24677788899888886544    347777776 344 44444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.89  E-value=3.7e-06  Score=82.07  Aligned_cols=179  Identities=14%  Similarity=0.177  Sum_probs=110.1

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCcEEEEECCCc-EEEEecCC--cEEEe
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDADKG-LLKVTEEG--VTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~~~g--~~~l~  151 (373)
                      ....++++.++|... ++..++.|..++.+++ ...+........ ++++.++|+..++....+ +..++.++  ...+.
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~  382 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  382 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE-EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec
Confidence            345678888888766 5678888988886554 333333334456 889999998665433344 44455555  33332


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCE
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~  231 (373)
                      ..     ...+.++++++||+..++.+.                 .+.|..+|........+.........++|+||++.
T Consensus       383 ~~-----~~~v~~~~~s~dg~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~  440 (577)
T 2ymu_A          383 GH-----SSSVRGVAFSPDGQTIASASD-----------------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT  440 (577)
T ss_dssp             CC-----SSCEEEEEECTTSSCEEEEET-----------------TSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CC-----CCCeEEEEECCCCCEEEEEeC-----------------CCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCE
Confidence            11     134678999999976655332                 36788888654444444333344568999999995


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      +..+ ..++.|..|+.++..   ...+. ........++++++|++.++...
T Consensus       441 l~~~-~~d~~v~~w~~~~~~---~~~~~-~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          441 IASA-SDDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             EEEE-ETTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSCEEEEEET
T ss_pred             EEEE-cCCCEEEEEECCCCE---EEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            5554 456678888865431   22222 22234566889999987766543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.88  E-value=5.2e-06  Score=76.72  Aligned_cols=238  Identities=14%  Similarity=0.128  Sum_probs=131.6

Q ss_pred             ccccceeEeccCCcC----CcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeec----------CccccCeEECCC
Q 017317           63 SDIQSVTRLGEGILN----GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG----------GDTLLGITTTQE  127 (373)
Q Consensus        63 ~~l~~~~~~~~g~~~----~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~----------~~p~~gl~~d~~  127 (373)
                      ..+..+++...+.-.    .....+++ +|.||+++.++.|+.+| .+|+..-.....          ......+.. .+
T Consensus        26 ~~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~  103 (376)
T 3q7m_A           26 FTPTTAWSTSVGSGIGNFYSNLHPALA-DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SG  103 (376)
T ss_dssp             SCCEEEEEECCTTTTTTSCCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ET
T ss_pred             CcceEEeEEecCCCccccceeeccEEE-CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eC
Confidence            345555665544211    11123554 78999999999999999 467654222211          111113334 46


Q ss_pred             CcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeC
Q 017317          128 NEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       128 g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  205 (373)
                      +.+|+++....|+.+| .+| ...-.. ..+..   .....+ .+|.+|++..                  .+.|+.+|.
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~---~~~p~~-~~~~v~v~~~------------------~g~l~~~d~  160 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTK-VAGEA---LSRPVV-SDGLVLIHTS------------------NGQLQALNE  160 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEE-CSSCC---CSCCEE-ETTEEEEECT------------------TSEEEEEET
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEe-CCCce---EcCCEE-ECCEEEEEcC------------------CCeEEEEEC
Confidence            8999998777899999 678 433222 12111   111222 3679999864                  378999999


Q ss_pred             CCCeEEEeecCCCC------cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCC--------CCceeE
Q 017317          206 SLNETSILLDSLFF------ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGG--------PDNIKL  271 (373)
Q Consensus       206 ~~~~~~~~~~~~~~------~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~--------p~~i~~  271 (373)
                      .+++..........      ....++. + ..+|+. +.++.++.++....+........ ...+.        ......
T Consensus       161 ~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~~v~~g-~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~  236 (376)
T 3q7m_A          161 ADGAVKWTVNLDMPSLSLRGESAPTTA-F-GAAVVG-GDNGRVSAVLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPV  236 (376)
T ss_dssp             TTCCEEEEEECCC-----CCCCCCEEE-T-TEEEEC-CTTTEEEEEETTTCCEEEEEECC-C-----------CCCCCCE
T ss_pred             CCCcEEEEEeCCCCceeecCCCCcEEE-C-CEEEEE-cCCCEEEEEECCCCcEEEEEecc-cCCCCcccccccccCCCcE
Confidence            88875533221111      1223333 3 346665 44668999986533221111100 00000        011112


Q ss_pred             CCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEE
Q 017317          272 APDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALE  350 (373)
Q Consensus       272 d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~  350 (373)
                      ..+|.+|+++..+                                   .+..+|+ +|+.+......      ....+..
T Consensus       237 ~~~~~v~~~~~~g-----------------------------------~l~~~d~~tG~~~w~~~~~------~~~~~~~  275 (376)
T 3q7m_A          237 VVNGVVFALAYNG-----------------------------------NLTALDLRSGQIMWKRELG------SVNDFIV  275 (376)
T ss_dssp             EETTEEEEECTTS-----------------------------------CEEEEETTTCCEEEEECCC------CEEEEEE
T ss_pred             EECCEEEEEecCc-----------------------------------EEEEEECCCCcEEeeccCC------CCCCceE
Confidence            2468899987654                                   3788885 68877655421      2344555


Q ss_pred             eCCEEEEeeCCCCeEEEeeCC
Q 017317          351 FDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       351 ~~g~L~vgs~~~~~i~~~~l~  371 (373)
                      .+++||+++.. ..|..+++.
T Consensus       276 ~~~~l~~~~~~-g~l~~~d~~  295 (376)
T 3q7m_A          276 DGNRIYLVDQN-DRVMALTID  295 (376)
T ss_dssp             ETTEEEEEETT-CCEEEEETT
T ss_pred             ECCEEEEEcCC-CeEEEEECC
Confidence            68999999974 458888765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.88  E-value=5.9e-07  Score=83.13  Aligned_cols=215  Identities=11%  Similarity=0.149  Sum_probs=125.6

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCcc--ccc
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSR--INL  161 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~--~~~  161 (373)
                      +|.+|+++.++.|+.++ .+|+..-.............+ .+|.+|++....+++.+| .+| ....... ....  ...
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNL-DMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEEC-CC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeC-CCCceeecC
Confidence            89999999999999999 568754322222222213334 367999988767799999 678 4332221 1111  011


Q ss_pred             cceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc-------------ceEEEccC
Q 017317          162 ADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA-------------NGVALSKD  228 (373)
Q Consensus       162 ~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~-------------~gi~~~~d  228 (373)
                      ....+++ +|.+|++..                  .+.|+.+|+.+++....... ..+             ....+  .
T Consensus       181 ~~~~~~~-~~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~--~  238 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGGD------------------NGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV--V  238 (376)
T ss_dssp             CCCCEEE-TTEEEECCT------------------TTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE--E
T ss_pred             CCCcEEE-CCEEEEEcC------------------CCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE--E
Confidence            1223333 678998753                  37899999988876532221 111             11122  2


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      ++.+|++. .++.++.++....+.    .+..... ....+..+ ++++|+++..+                        
T Consensus       239 ~~~v~~~~-~~g~l~~~d~~tG~~----~w~~~~~-~~~~~~~~-~~~l~~~~~~g------------------------  287 (376)
T 3q7m_A          239 NGVVFALA-YNGNLTALDLRSGQI----MWKRELG-SVNDFIVD-GNRIYLVDQND------------------------  287 (376)
T ss_dssp             TTEEEEEC-TTSCEEEEETTTCCE----EEEECCC-CEEEEEEE-TTEEEEEETTC------------------------
T ss_pred             CCEEEEEe-cCcEEEEEECCCCcE----EeeccCC-CCCCceEE-CCEEEEEcCCC------------------------
Confidence            34577775 456899998653321    1221111 22334443 77899998754                        


Q ss_pred             hhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          309 IKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                 .++.+|+ +|+.........+   .........+++||+++.. ..|..++..
T Consensus       288 -----------~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~l~v~~~~-g~l~~~d~~  336 (376)
T 3q7m_A          288 -----------RVMALTIDGGVTLWTQSDLLH---RLLTSPVLYNGNLVVGDSE-GYLHWINVE  336 (376)
T ss_dssp             -----------CEEEEETTTCCEEEEECTTTT---SCCCCCEEETTEEEEECTT-SEEEEEETT
T ss_pred             -----------eEEEEECCCCcEEEeecccCC---CcccCCEEECCEEEEEeCC-CeEEEEECC
Confidence                       3788884 6887766543222   1233444567899999974 358877765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.86  E-value=1.5e-06  Score=76.44  Aligned_cols=172  Identities=10%  Similarity=0.051  Sum_probs=101.3

Q ss_pred             CCEEEEe---cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cC-C-cEEEeeccCCcccc
Q 017317           88 GVLYTAT---RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-G-VTVLASHVNGSRIN  160 (373)
Q Consensus        88 G~l~v~~---~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~-g-~~~l~~~~~~~~~~  160 (373)
                      |.+|.+.   .++.|+.++ .+++...+........ +++++++|+.++......++.++ .+ + ...+...   ....
T Consensus        10 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~   85 (297)
T 2ojh_A           10 TRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTG---FATI   85 (297)
T ss_dssp             --------CCCCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCT---TCCC
T ss_pred             eeEeecCCCCcceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccc---cccc
Confidence            4455432   456788888 4555555544455667 89999999866554456788888 66 6 5443321   1223


Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                      .+.++++.+||+.++....             .......||.++..+++...+... .....++++||++.++++.....
T Consensus        86 ~~~~~~~spdg~~l~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDK-------------VEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             BCSCCEECTTSSEEEEEEC-------------TTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred             cccceEECCCCCEEEEEEe-------------CCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence            5678899999975444321             011346899999877765554332 33677899999998886655455


Q ss_pred             e--EEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEE
Q 017317          241 R--CLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAI  281 (373)
Q Consensus       241 ~--i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~  281 (373)
                      .  |+.++..+..   ...+. .....+..++++++|+. +++.
T Consensus       152 ~~~l~~~~~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          152 VFDIYSMDIDSGV---ETRLT-HGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEEEEEEETTTCC---EEECC-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEEECCCCc---ceEcc-cCCCccccceECCCCCEEEEEe
Confidence            4  4444443322   22222 22334567888999974 4444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.85  E-value=4.9e-07  Score=78.67  Aligned_cols=153  Identities=10%  Similarity=0.042  Sum_probs=106.0

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .+..+|.++ ++.||++++.                 .|.|.++|++++++... ...-.+..|+++  +++.||+++..
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~-----------------~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~  114 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGH-----------------QGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGERLYQLTWT  114 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETT-----------------TTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSSCEEEEESS
T ss_pred             cccceEEEE-CCEEEEEcCC-----------------CCEEEEEECCCCcEEeEECCCCcceeEEEE--eCCEEEEEEcc
Confidence            355788887 5799999864                 36799999998875432 333334456665  55679999988


Q ss_pred             CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317          239 KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK  318 (373)
Q Consensus       239 ~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  318 (373)
                      ++.+++||.+..  .....+.  .++.+.+++.|. ++||++....                                  
T Consensus       115 ~~~v~V~D~~Tl--~~~~ti~--~~~eGwGLt~Dg-~~L~vSdGs~----------------------------------  155 (268)
T 3nok_A          115 EGLLFTWSGMPP--QRERTTR--YSGEGWGLCYWN-GKLVRSDGGT----------------------------------  155 (268)
T ss_dssp             SCEEEEEETTTT--EEEEEEE--CSSCCCCEEEET-TEEEEECSSS----------------------------------
T ss_pred             CCEEEEEECCcC--cEEEEEe--CCCceeEEecCC-CEEEEECCCC----------------------------------
Confidence            999999996532  2222332  123456777652 3688886322                                  


Q ss_pred             EEEEEECCC-CcEEEEEeC-CCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          319 AAVVNVAAN-GIVIRKFED-PNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       319 g~v~~~~~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                       .+..+|++ .+++..+.. .++..+..+..+...+|+||+..+.++.|.++++..
T Consensus       156 -~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~T  210 (268)
T 3nok_A          156 -MLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPAT  210 (268)
T ss_dssp             -EEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTT
T ss_pred             -EEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCC
Confidence             47888965 577776654 244545566777777899999999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.83  E-value=5.2e-06  Score=75.92  Aligned_cols=234  Identities=8%  Similarity=-0.006  Sum_probs=134.8

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEE-cCCc---eEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT---WENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTV  149 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~---~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~  149 (373)
                      ...++++.++|.+. ++..++.|..++ .+++   ...+........ .+++.++|++++ +...+.+..++ .++ ...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            35678899988766 666899999998 4443   223333334456 899999987555 45445577777 555 322


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe----EEEeecC-CCCcceEE
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSILLDS-LFFANGVA  224 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~~~~~~~-~~~~~gi~  224 (373)
                      .... .+ ....+.++++.++|.+.++.+.                 .+.|..+|.++++    ....... ......++
T Consensus        89 ~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           89 TLVI-LR-INRAARCVRWAPNEKKFAVGSG-----------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEEC-CC-CSSCEEEEEECTTSSEEEEEET-----------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             eEEe-ec-CCCceeEEEECCCCCEEEEEeC-----------------CCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            2111 11 1235778999999976555432                 2455554444333    1222222 33457899


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCC---------------CcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchh
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGES---------------KEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGL  289 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~  289 (373)
                      ++++++.++.+ ..++.|..|++....               .+..........+....++++++|++.++....     
T Consensus       150 ~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  223 (372)
T 1k8k_C          150 WHPNSVLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----  223 (372)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred             EcCCCCEEEEE-cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----
Confidence            99999855555 456678888854211               111111111122345668888999755554322     


Q ss_pred             hhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEE
Q 017317          290 EFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGK  367 (373)
Q Consensus       290 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~  367 (373)
                                                   +.+..+|. +++.+..+....+    .+..+... ++++.+++ ....|..
T Consensus       224 -----------------------------~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~i  269 (372)
T 1k8k_C          224 -----------------------------STVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPVL  269 (372)
T ss_dssp             -----------------------------TEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred             -----------------------------CEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEEE
Confidence                                         23566663 5777777765432    45666655 56665555 5566766


Q ss_pred             eeCC
Q 017317          368 LPLK  371 (373)
Q Consensus       368 ~~l~  371 (373)
                      +++.
T Consensus       270 ~~~~  273 (372)
T 1k8k_C          270 FTYD  273 (372)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            6654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=1.5e-06  Score=81.28  Aligned_cols=190  Identities=11%  Similarity=0.059  Sum_probs=114.7

Q ss_pred             CCCEEEEe-cCCeEEEEEc---CCceEEe--e-------e-ecCccccCeEECCCCcEEEEECC-------CcEEEEe-c
Q 017317           87 NGVLYTAT-RDGWIKRLHK---NGTWENW--K-------L-IGGDTLLGITTTQENEILVCDAD-------KGLLKVT-E  144 (373)
Q Consensus        87 ~G~l~v~~-~~g~I~~~~~---~g~~~~~--~-------~-~~~~p~~gl~~d~~g~L~va~~~-------~gl~~~~-~  144 (373)
                      ...||+.. .+++|+.+|.   ..+.+..  .       . ...+|+ ++...++| +||+..+       ++++.+| .
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            45677765 6789999992   2222221  1       1 123788 89999999 9986332       4688898 5


Q ss_pred             CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccc------cccccccccCCceEEEEeCCCCeEEEeecC
Q 017317          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHN------WGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (373)
Q Consensus       145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~------~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  216 (373)
                      ++  +..+.  ....+.....++.+.+++++.++..   ||...      ...++.. ....+|..||.++++......-
T Consensus       173 T~~v~~~~~--~~~~~~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~-~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          173 SFEPLGKWE--IDRGDQYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKD-RYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             TCCEEEECC--SBCTTCCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHH-HSCCEEEEEETTTTEEEEEEES
T ss_pred             CCeEEEEEc--cCCCCccccceEEECCCCCEEEEcc---CcCccccccccchhhhhh-ccCCEEEEEECCCCcEeeEEec
Confidence            44  22221  1222334566788899997666542   22111      1112222 4567899999887754432222


Q ss_pred             ---CCCcceEEE--ccCCCEEEEEeC-----CCCeEEEEEecCCCCcceeEE-------ecCC----------CCCCCce
Q 017317          217 ---LFFANGVAL--SKDEDYLVVCET-----FKFRCLKYWLKGESKEQTEIF-------VENL----------PGGPDNI  269 (373)
Q Consensus       217 ---~~~~~gi~~--~~dg~~l~v~~~-----~~~~i~~~~~~~~~~~~~~~~-------~~~~----------~g~p~~i  269 (373)
                         ...|..+.|  +|++++.|++..     ..+.|.+|..++.......+.       ...+          +..|.+|
T Consensus       247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence               235667766  999999999988     778888776654221111111       0011          3578899


Q ss_pred             eECCCCC-EEEEEecC
Q 017317          270 KLAPDGS-FWIAILQL  284 (373)
Q Consensus       270 ~~d~dG~-lwva~~~~  284 (373)
                      .+++||+ |||++++.
T Consensus       327 ~lS~DGrfLYVSnrg~  342 (462)
T 2ece_A          327 DISLDDKFLYLSLWGI  342 (462)
T ss_dssp             EECTTSCEEEEEETTT
T ss_pred             EECCCCCEEEEEeCCC
Confidence            9999996 78887764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.81  E-value=2.2e-06  Score=80.67  Aligned_cols=204  Identities=11%  Similarity=0.057  Sum_probs=128.7

Q ss_pred             CcceEEEecCCCEE-EEecC---CeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC-C--CcEEEEe-cCC-
Q 017317           78 GPEDVCVDRNGVLY-TATRD---GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA-D--KGLLKVT-EEG-  146 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~---g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~-~--~gl~~~~-~~g-  146 (373)
                      ...++++.|+|+.. +++.+   ..|+.++ .+|+...+....+... .+++.+||+ |+++.. .  ..|+.++ .++ 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            45678889988744 45444   4889998 5666655544445566 899999997 443432 2  2388888 666 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~  225 (373)
                      ...+...     ......+++.|||+ |+++...               .....||.+|.++++.+.+.........++|
T Consensus       259 ~~~l~~~-----~~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          259 IRQVTDG-----RSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADV  318 (415)
T ss_dssp             EEECCCC-----SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EEeCcCC-----CCcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEE
Confidence            5443221     12456789999996 6555421               1224799999988776654433344567899


Q ss_pred             ccCCCEEEEEeCC--CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecCCCchhhhccCChHHHHHH
Q 017317          226 SKDEDYLVVCETF--KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQLSSPGLEFVHTSKATKHLL  302 (373)
Q Consensus       226 ~~dg~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~~~~~~~~~~~~p~~~~~~  302 (373)
                      +|||+.|+++...  ...|+.+++.+...   ..+..  ......++++++|+. +++.....                 
T Consensus       319 spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~--~~~~~~~~~spdg~~l~~~s~~~~-----------------  376 (415)
T 2hqs_A          319 SSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSS--TFLDETPSLAPNGTMVIYSSSQGM-----------------  376 (415)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCC--SSSCEEEEECTTSSEEEEEEEETT-----------------
T ss_pred             CCCCCEEEEEECcCCceEEEEEECCCCCE---EEecC--CCCcCCeEEcCCCCEEEEEEcCCC-----------------
Confidence            9999988887654  35788888765432   22221  124566889999984 44443321                 


Q ss_pred             HhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCC
Q 017317          303 AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG  339 (373)
Q Consensus       303 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g  339 (373)
                                     ...+..++.+|+....+....+
T Consensus       377 ---------------~~~l~~~d~~g~~~~~l~~~~~  398 (415)
T 2hqs_A          377 ---------------GSVLNLVSTDGRFKARLPATDG  398 (415)
T ss_dssp             ---------------EEEEEEEETTSCCEEECCCSSS
T ss_pred             ---------------ccEEEEEECCCCcEEEeeCCCC
Confidence                           1347778888887777765544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.80  E-value=2.7e-06  Score=85.42  Aligned_cols=199  Identities=11%  Similarity=0.041  Sum_probs=113.0

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cC-----C-cE
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-----G-VT  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~-----g-~~  148 (373)
                      ..+.++++.+++.+.++ .++.|+.++ .+++............ .+++++||+..+......|+.++ .+     | ..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            45778999999555554 458999999 4555544444445566 89999999754433446688888 66     7 44


Q ss_pred             EEeeccCC----------ccccccceeEEcCCCc-EEEEeCCccccccccc----------------cccccccCCceEE
Q 017317          149 VLASHVNG----------SRINLADDLIAATDGS-IYFSVASTKFGLHNWG----------------LDLLEAKPHGKLL  201 (373)
Q Consensus       149 ~l~~~~~~----------~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~----------------~~~~~~~~~g~l~  201 (373)
                      .+......          .....+.+++++|||+ |+++.... -+...+.                ....+......|+
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ-SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC-TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            43221111          0011247889999996 44443110 0000000                0000112345799


Q ss_pred             EEeCCCCeEEEeecC---CCCcceEEEccCCCEEEEEeCCC----CeEEEEEecCCCCcceeEEe-cCCCC---CCCcee
Q 017317          202 KYDPSLNETSILLDS---LFFANGVALSKDEDYLVVCETFK----FRCLKYWLKGESKEQTEIFV-ENLPG---GPDNIK  270 (373)
Q Consensus       202 ~~d~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~~~----~~i~~~~~~~~~~~~~~~~~-~~~~g---~p~~i~  270 (373)
                      .+|.++++...+...   ......++|+|||+.++++...+    ..|+.++..+..  ...... .....   ....++
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCSCCE
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccCCce
Confidence            999988876655422   12345789999999888865433    367788865431  111111 11111   235678


Q ss_pred             ECC--CCCEEEE
Q 017317          271 LAP--DGSFWIA  280 (373)
Q Consensus       271 ~d~--dG~lwva  280 (373)
                      +.+  ||++.++
T Consensus       317 ~sp~~dg~~l~~  328 (706)
T 2z3z_A          317 FLPGSNNQFIWQ  328 (706)
T ss_dssp             ECTTCSSEEEEE
T ss_pred             eecCCCCEEEEE
Confidence            888  8875443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.79  E-value=2.1e-05  Score=72.93  Aligned_cols=245  Identities=12%  Similarity=0.025  Sum_probs=135.6

Q ss_pred             eEeccCCcCCcceEEEecCC-CEEEEec----------CCeEEEEEc-CCceEEeeee--------cCccccCeEECCCC
Q 017317           69 TRLGEGILNGPEDVCVDRNG-VLYTATR----------DGWIKRLHK-NGTWENWKLI--------GGDTLLGITTTQEN  128 (373)
Q Consensus        69 ~~~~~g~~~~P~~ia~d~~G-~l~v~~~----------~g~I~~~~~-~g~~~~~~~~--------~~~p~~gl~~d~~g  128 (373)
                      ..+..|  ..| .+++++|| .+|+.+.          ++.|.++|. +++.......        ...|. ++++++||
T Consensus        61 ~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG  136 (373)
T 2mad_H           61 GHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNN  136 (373)
T ss_pred             EEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCC
Confidence            344445  468 99999977 4788752          467889984 4443221111        23578 99999999


Q ss_pred             c-EEEEECC--CcEEEEecCCcEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEe
Q 017317          129 E-ILVCDAD--KGLLKVTEEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (373)
Q Consensus       129 ~-L~va~~~--~gl~~~~~~g~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d  204 (373)
                      + ||+++..  ..|..+| ...+.+....+     .+..+.+.++| +.|++..                 ..|.+..+|
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~-----------------~dg~~~~vd  193 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLC-----------------AQGGLAKTD  193 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCCCEEeEEcC-----CCceEEEEeCCCceEEEEc-----------------CCCCEEEEE
Confidence            5 8888642  4577787 43222211011     11123444555 5666643                 247788888


Q ss_pred             CCCCeEEEeec-----CCCCc--ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe--c----CCCCCCCc---
Q 017317          205 PSLNETSILLD-----SLFFA--NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV--E----NLPGGPDN---  268 (373)
Q Consensus       205 ~~~~~~~~~~~-----~~~~~--~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~----~~~g~p~~---  268 (373)
                      . +++......     ....|  ....++++++.+|+.. ..+.++.+++.+........+.  .    .....|.+   
T Consensus       194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  271 (373)
T 2mad_H          194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ  271 (373)
T ss_pred             C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence            7 555442111     11111  2234566666666665 4567888887543221111110  0    01124666   


Q ss_pred             eeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC-CcEEEEEeCCCCceeccee
Q 017317          269 IKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN-GIVIRKFEDPNGKVMSFVT  346 (373)
Q Consensus       269 i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~~  346 (373)
                      +++++|| ++|++...+....                         .....+.+..+|.+ ++++..+....     .+.
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~-------------------------~~~~~~~V~VID~~t~~vv~~i~~g~-----~p~  321 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWK-------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVD  321 (373)
T ss_pred             EEECCCCCEEEEEeccCCccc-------------------------ccCCCCeEEEEECCCCEEEEEEECCC-----CcC
Confidence            7889887 5899875321000                         00012347778854 67777775432     244


Q ss_pred             EEEEe--CC-EEEEeeCCCCeEEEeeCCC
Q 017317          347 SALEF--DD-HLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       347 ~~~~~--~g-~L~vgs~~~~~i~~~~l~~  372 (373)
                      .+...  +. .+|+++..++.|.++++..
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            55544  34 5777777789999998763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.78  E-value=8.9e-06  Score=76.49  Aligned_cols=160  Identities=13%  Similarity=0.093  Sum_probs=100.6

Q ss_pred             CeEEEEEcCC-ceEEeeeecCccccCeEECCCCc-EEEEECC---CcEEEEe-cCC-cEEEeeccCCccccccceeEEcC
Q 017317           97 GWIKRLHKNG-TWENWKLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT  169 (373)
Q Consensus        97 g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~  169 (373)
                      +.|+.++.+| ....+........ ++++.++|+ |..+...   ..|+.++ .+| ...+... .    ..+..+++.|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECT
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcC
Confidence            6788888655 3444444445566 899999997 4444433   2578888 667 5444321 1    2467889999


Q ss_pred             CCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC--CeEEEEE
Q 017317          170 DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK--FRCLKYW  246 (373)
Q Consensus       170 dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~  246 (373)
                      ||+ |+++.+.               .....|+.+|..+++...+.........++|+|||+.|+++....  ..|+.++
T Consensus       233 dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          233 DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            996 6655432               123569999998887766544444456799999999888776432  3788888


Q ss_pred             ecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          247 LKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       247 ~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      +.+...   ..+. ........+++++||+..+..
T Consensus       298 ~~~~~~---~~l~-~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          298 INGGAP---QRIT-WEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             TTSSCC---EECC-CSSSEEEEEEECTTSSEEEEE
T ss_pred             CCCCCE---EEEe-cCCCcccCeEECCCCCEEEEE
Confidence            765432   1111 112234457889999754443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.75  E-value=8.3e-06  Score=74.71  Aligned_cols=228  Identities=10%  Similarity=0.016  Sum_probs=135.2

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceE-Eee----eecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cE
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWK----LIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VT  148 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~-~~~----~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~  148 (373)
                      -.++++.+++.+.+++.+|.|..++ .+++.. ...    ...+... .+++.++|+++++ ...+.|..++ .++  ..
T Consensus        85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~-~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS-TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4568888899999999999999998 444321 111    1123455 8999999986654 5445577777 666  33


Q ss_pred             EEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec---CCCCcceEE
Q 017317          149 VLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFANGVA  224 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~~gi~  224 (373)
                      .+..+     ...+..+++.+++ .++++.+.                 .+.|..+|..+++......   .......++
T Consensus       164 ~~~~h-----~~~V~~~~~~~~~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          164 SYRAH-----AAQVTCVAASPHKDSVFLSCSE-----------------DNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EECCC-----SSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEcCc-----CCceEEEEecCCCCCceeeecc-----------------ccccccccccccceeeeeecceeeccceeee
Confidence            33211     2356789999988 57666432                 4678888887665433221   123356789


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEE-ecCCCchhhhccCChHHHHHH
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI-LQLSSPGLEFVHTSKATKHLL  302 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~-~~~~~~~~~~~~~~p~~~~~~  302 (373)
                      +++++..++++...++.|..||+...+.  ...+. .-......+++.++|. +.++. ..+                  
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~------------------  280 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSVPFLASLSEDC------------------  280 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSSCCEEEEETTS------------------
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCCeEEEEEeCCC------------------
Confidence            9987665777766777888898764322  12222 1122345678888885 43332 223                  


Q ss_pred             HhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          303 AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       303 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                                       .|..+|.+...+..+...    ...+..+.+. + .+|..+.-....|...+++
T Consensus       281 -----------------~i~vwd~~~~~~~~~~~H----~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          281 -----------------SLAVLDSSLSELFRSQAH----RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             -----------------CEEEECTTCCEEEEECCC----SSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             -----------------eEEEEECCCCcEEEEcCC----CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence                             356667554444444332    2457777775 3 3455433233446666554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.75  E-value=2e-05  Score=70.66  Aligned_cols=181  Identities=12%  Similarity=0.040  Sum_probs=110.9

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEc-CCc----eEEee--eecCccccCeEECCCCcEE-EEECCCcEEEEe-cCC-
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-NGT----WENWK--LIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~----~~~~~--~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g-  146 (373)
                      ....++++.++|.+.+...+|.|..++. .++    ...+.  ....... .+++.++++++ ++...+.+..++ .++ 
T Consensus        52 ~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  130 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence            4567899999888775444899999983 322    12221  1223455 88999999754 455545567777 444 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~  225 (373)
                      ....... .+ ....+..+++.++|...++.+.                 .+.|..+|..+++....... ......+++
T Consensus       131 ~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~-----------------dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          131 PRIKAEL-TS-SAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEEE-EC-SSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cceeeec-cc-CCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            3222211 11 1234678899999976555332                 47788999887765444332 344578999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +++++.++.+. .++.|..|++...+.  ...+  ...+....++++++|++.++..
T Consensus       192 ~~~~~~l~~~~-~dg~i~~~d~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~  243 (337)
T 1gxr_A          192 SNDGTKLWTGG-LDNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTGEWLAVGM  243 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCEEEEEe-cCCcEEEEECCCCce--Eeee--cCCCceEEEEECCCCCEEEEEc
Confidence            99998666554 567899998754321  1111  1234456788889997655543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.74  E-value=6.2e-06  Score=76.32  Aligned_cols=239  Identities=17%  Similarity=0.084  Sum_probs=128.3

Q ss_pred             eEeccCCcCCcceEEEecCCC-EEEEec----------CCeEEEEE-cCCceEEeeee--------cCccccCeEECCCC
Q 017317           69 TRLGEGILNGPEDVCVDRNGV-LYTATR----------DGWIKRLH-KNGTWENWKLI--------GGDTLLGITTTQEN  128 (373)
Q Consensus        69 ~~~~~g~~~~P~~ia~d~~G~-l~v~~~----------~g~I~~~~-~~g~~~~~~~~--------~~~p~~gl~~d~~g  128 (373)
                      .++..|  ..|. ++++++|+ +|+++.          ++.|.++| .+++.......        ...|. ++++++||
T Consensus        73 ~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDG  148 (386)
T 3sjl_D           73 GMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDG  148 (386)
T ss_dssp             EEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTS
T ss_pred             EEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCC
Confidence            344445  4585 99999775 888762          45688998 44543322222        23688 99999999


Q ss_pred             c-EEEEEC--CCcEEEEe-cCC--cEEEeeccCCccccccce----eEEcCCCcEEEEeCCccccccccccccccccCCc
Q 017317          129 E-ILVCDA--DKGLLKVT-EEG--VTVLASHVNGSRINLADD----LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (373)
Q Consensus       129 ~-L~va~~--~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~----l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g  198 (373)
                      + |||++.  .+.+..+| .++  ...+.  .++.....|.+    ++..+||++                         
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~tI~--v~g~~~~~P~g~~~~~~~~~DG~~-------------------------  201 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLD--VPDCYHIFPTAPDTFFMHCRDGSL-------------------------  201 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEETTSCE-------------------------
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEEEEE--CCCcceeecCCCceeEEECCCCCE-------------------------
Confidence            5 899975  35577888 566  33331  11111111111    244455543                         


Q ss_pred             eEEEEeCCC-CeEEE----eecCCCCc--ceEEEc-cCCCEEEEEeCCCCeEEEEEecCCCCcc---eeEEec------C
Q 017317          199 KLLKYDPSL-NETSI----LLDSLFFA--NGVALS-KDEDYLVVCETFKFRCLKYWLKGESKEQ---TEIFVE------N  261 (373)
Q Consensus       199 ~l~~~d~~~-~~~~~----~~~~~~~~--~gi~~~-~dg~~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~------~  261 (373)
                        ..++..+ +++..    .......+  +-.+|+ ++|+.+|++.  .++++.++..+.....   ...+..      .
T Consensus       202 --~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~  277 (386)
T 3sjl_D          202 --AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGW  277 (386)
T ss_dssp             --EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred             --EEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceeccccccccccc
Confidence              3333322 22111    11110111  223554 6886555554  4689999986653211   111110      0


Q ss_pred             CCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCC
Q 017317          262 LPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNG  339 (373)
Q Consensus       262 ~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g  339 (373)
                      .++....+++++++ ++|++.......    -                     .-.+...+..+|. .++++..+.... 
T Consensus       278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~----~---------------------hk~~~~~V~viD~~t~kv~~~i~vg~-  331 (386)
T 3sjl_D          278 RPGGWQQVAYHRALDRIYLLVDQRDEW----R---------------------HKTASRFVVVLDAKTGERLAKFEMGH-  331 (386)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECCTT----C---------------------TTSCEEEEEEEETTTCCEEEEEEEEE-
T ss_pred             cCCCcceeeECCCCCeEEEEecccccc----c---------------------cCCCCCEEEEEECCCCeEEEEEECCC-
Confidence            11222337888777 589987532100    0                     0112245788884 678888775422 


Q ss_pred             ceecceeEEEEe-CC--EEEEeeCCCCeEEEeeCCC
Q 017317          340 KVMSFVTSALEF-DD--HLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       340 ~~~~~~~~~~~~-~g--~L~vgs~~~~~i~~~~l~~  372 (373)
                          .+.++..+ ++  .||+++..++.|+.++...
T Consensus       332 ----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          332 ----EIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             ----EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             ----CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                24455554 33  5888888889999998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.74  E-value=7.1e-07  Score=82.21  Aligned_cols=182  Identities=15%  Similarity=0.063  Sum_probs=105.3

Q ss_pred             cceEEEecCCCEEEE-ec------CCeEEEEE-cCCceE-----EeeeecCccccCeEECCCCcEEEEECCCcEEEEe-c
Q 017317           79 PEDVCVDRNGVLYTA-TR------DGWIKRLH-KNGTWE-----NWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (373)
Q Consensus        79 P~~ia~d~~G~l~v~-~~------~g~I~~~~-~~g~~~-----~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~  144 (373)
                      -.++++.|||.+.+. +.      ++.|..++ .++...     .......... .+++.+++.++++...+.|..++ .
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~dg~v~lWd~~  123 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASDSGAVELWEIL  123 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEETTSCEEEC---
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEECCCEEEEeecc
Confidence            467899999998854 33      56777776 333211     1111223355 88999999988887665566666 4


Q ss_pred             CC-cEE-EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcc
Q 017317          145 EG-VTV-LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFAN  221 (373)
Q Consensus       145 ~g-~~~-l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~  221 (373)
                      ++ ... ......+ ....+.++++.|+|+..++.+.                 .+.|..+|..+++....... ....+
T Consensus       124 ~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs~-----------------dg~v~iwd~~~~~~~~~~~~h~~~v~  185 (357)
T 4g56_B          124 EKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGK-----------------DFSVKVWDLSQKAVLKSYNAHSSEVN  185 (357)
T ss_dssp             -----CCCCEEECC-CSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             ccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCCCCCEE
Confidence            44 211 1111111 1235788999999987776432                 46788889887776544433 33457


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEE
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIA  280 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva  280 (373)
                      .++++++++.++++...++.|..+++...+........ .....+..+++.+++ ++.++
T Consensus       186 ~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          186 CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEE
T ss_pred             EEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEEE
Confidence            89999998767777666778888886543221111111 112334557777765 44443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.74  E-value=3.8e-05  Score=69.85  Aligned_cols=185  Identities=13%  Similarity=0.078  Sum_probs=112.5

Q ss_pred             cCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-
Q 017317           73 EGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-  146 (373)
Q Consensus        73 ~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-  146 (373)
                      .|....-.++++.++|.+. +++.+|.|..++ .+++. ..+........ .+++.++|++.++ ...+.+..++ .++ 
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            3444556788999988766 677899999999 44543 23322233455 8889999986654 4434455555 332 


Q ss_pred             --cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceE
Q 017317          147 --VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGV  223 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi  223 (373)
                        .+... ...+. ...+..+.+.+++.+..+..                  .+.|..+|..+++......+ ......+
T Consensus       131 ~~~~~~~-~~~~h-~~~v~~~~~~~~~~l~s~s~------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          131 GNVRVSR-ELAGH-TGYLSCCRFLDDNQIVTSSG------------------DTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             BSCEEEE-EEECC-SSCEEEEEEEETTEEEEEET------------------TSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CcceeEE-EecCC-CccEEEEEECCCCcEEEEEC------------------CCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence              22221 11111 12456777777887655543                  36788889887765544333 2345689


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +++|+++ ++++...++.|..|++....  ....+. ........+++.++|++.++..
T Consensus       191 ~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s  245 (340)
T 1got_B          191 SLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEc
Confidence            9999998 55555567788888875432  112222 2223456688999998766554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.73  E-value=2.2e-05  Score=71.29  Aligned_cols=247  Identities=13%  Similarity=-0.008  Sum_probs=138.5

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEE-ECC-----CcEEEEe-cCC-
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVC-DAD-----KGLLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~-----~gl~~~~-~~g-  146 (373)
                      ....++++.++|..+ +++.+|.|..++ .+++............ .+++.++++.+++ ...     +.+..++ ..+ 
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            445678898877655 677899999999 5555443333445566 8999999976654 333     3455565 322 


Q ss_pred             -cEEEeecc--------CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEeec-
Q 017317          147 -VTVLASHV--------NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILLD-  215 (373)
Q Consensus       147 -~~~l~~~~--------~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~~-  215 (373)
                       ...+....        .......+..++++++|...++..                 ..|.|..+|..+ ++...... 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-----------------KDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-----------------TTSEEEEEETTTTTEEEEEEEC
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc-----------------CCCEEEEEECCCCcEeEEEEec
Confidence             11111100        000112567888999997655532                 247899999876 44333332 


Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCC
Q 017317          216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTS  295 (373)
Q Consensus       216 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~  295 (373)
                      .......++++++++.++.+. .++.|..|++.....  ...+.  .......++++++|.+.+..............  
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  289 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQV--LKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS--  289 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred             CCCceeEEEECCCCCEEEEec-CCceEEEEECCCCce--eeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEe--
Confidence            334457899999999666554 567888998764321  12222  22345568889999765554432111000000  


Q ss_pred             hHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CC-EEEEeeCCCCeEEEeeCC
Q 017317          296 KATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DD-HLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       296 p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~vgs~~~~~i~~~~l~  371 (373)
                                        .......+..++ ..++.+..+....    ..++.+... ++ .|..++. ...|...++.
T Consensus       290 ------------------~~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~  345 (369)
T 3zwl_B          290 ------------------ANEGKFEARFYHKIFEEEIGRVQGHF----GPLNTVAISPQGTSYASGGE-DGFIRLHHFE  345 (369)
T ss_dssp             -----------------------CEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSEEEEEET-TSEEEEEEEC
T ss_pred             ------------------cCCCcceeEEEecCCCcchhheeccc----CcEEEEEECCCCCEEEEEcC-CCeEEEEECc
Confidence                              011111345555 4567777776544    346777765 34 4555554 4457666654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.72  E-value=1.9e-06  Score=79.51  Aligned_cols=101  Identities=10%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             eeEEcCCC-cEEEEeC-CccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCe
Q 017317          164 DLIAATDG-SIYFSVA-STKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFR  241 (373)
Q Consensus       164 ~l~~~~dG-~l~v~~~-~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  241 (373)
                      .+++++|| ++|++.. ....+.        .......|+.+|..+++......... |.+++++|||++||+++.  +.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~  326 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GN  326 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SC
T ss_pred             EEEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--Ce
Confidence            37888885 6888753 100000        00123589999999887665444444 999999999999999874  78


Q ss_pred             EEEEEecCCCCcceeEEecCCCCCCCceeECCCCC
Q 017317          242 CLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       242 i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~  276 (373)
                      |..||....++.....+ ......|.+++++++|+
T Consensus       327 v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred             EEEEECCCCcceeeEEe-ccCCCCcEEEEecCCCC
Confidence            99998654321222222 12345799999999985

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.71  E-value=1e-06  Score=85.30  Aligned_cols=192  Identities=10%  Similarity=0.088  Sum_probs=114.0

Q ss_pred             CCEEEEe-cCCeEEEEEc-CCceEEeeee--cCccccCeEE-C-CCC-cEEEEEC-----------------CCc-EEEE
Q 017317           88 GVLYTAT-RDGWIKRLHK-NGTWENWKLI--GGDTLLGITT-T-QEN-EILVCDA-----------------DKG-LLKV  142 (373)
Q Consensus        88 G~l~v~~-~~g~I~~~~~-~g~~~~~~~~--~~~p~~gl~~-d-~~g-~L~va~~-----------------~~g-l~~~  142 (373)
                      ..+|+.+ .+++|.++|. ..+...+...  ...|+ |+++ . +++ .+|++..                 +.+ +-.+
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            4588866 5788999994 3343332222  35689 9997 3 666 5777742                 112 3334


Q ss_pred             e-cCCcEEEeeccCCccccccceeEEcCCC-cEEEEeCCcccccc---------ccc--------cccc-cc--cCCceE
Q 017317          143 T-EEGVTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLH---------NWG--------LDLL-EA--KPHGKL  200 (373)
Q Consensus       143 ~-~~g~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~---------~~~--------~~~~-~~--~~~g~l  200 (373)
                      | .+. ++...-.-+   ..+..+++++|| .+|+++..++.+..         ++.        .... .+  ...+.|
T Consensus       181 D~~t~-~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          181 DADKW-EVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             ETTTT-EEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             ECCCC-eEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            4 332 222221111   146788999998 57877755432211         000        0000 00  112458


Q ss_pred             EEEeCCC--CeE-EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC------CCc-ceeEEec-CCCCCCCce
Q 017317          201 LKYDPSL--NET-SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE------SKE-QTEIFVE-NLPGGPDNI  269 (373)
Q Consensus       201 ~~~d~~~--~~~-~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~------~~~-~~~~~~~-~~~g~p~~i  269 (373)
                      -.+|..+  ++. .........|.|+.++|||+++|+++...+.+..|+....      ++. ...+..+ .....|..+
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~  336 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  336 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE
T ss_pred             EEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE
Confidence            8899886  332 2233334689999999999999999999999999997632      111 1112222 233479999


Q ss_pred             eECCCCCEEEEEecC
Q 017317          270 KLAPDGSFWIAILQL  284 (373)
Q Consensus       270 ~~d~dG~lwva~~~~  284 (373)
                      ++|++|++|++..-.
T Consensus       337 aF~~dG~aY~t~~ld  351 (595)
T 1fwx_A          337 AFDGRGNAYTSLFLD  351 (595)
T ss_dssp             EECTTSEEEEEETTT
T ss_pred             EECCCCeEEEEEecC
Confidence            999999989987643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.70  E-value=4.1e-06  Score=76.74  Aligned_cols=181  Identities=12%  Similarity=0.032  Sum_probs=105.8

Q ss_pred             cceEEEecCCCEEEEecCC-------eEEEEEc--CC----ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-c
Q 017317           79 PEDVCVDRNGVLYTATRDG-------WIKRLHK--NG----TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-E  144 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g-------~I~~~~~--~g----~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~  144 (373)
                      -+++++.+||.+.++..++       .+..++.  .+    ............. .+++.+++.|.++...+.|..+| .
T Consensus        33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~l~~~s~dg~v~lWd~~  111 (344)
T 4gqb_B           33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA-DLTWVGERGILVASDSGAVELWELD  111 (344)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE-EEEEETTTEEEEEETTSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEE-EEEEeCCCeEEEEECCCEEEEEecc
Confidence            3578888999988765433       3333331  11    0111111122345 78898998888887665566677 5


Q ss_pred             CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcc
Q 017317          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFAN  221 (373)
Q Consensus       145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~  221 (373)
                      ++  .........+ ....+.++++.++|+..++.+.                 .+.|..+|..+++......+ .....
T Consensus       112 ~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sgs~-----------------d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          112 ENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSK-----------------DICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             TTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCceeEeeccccC-CCCCEEEEEECCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEcCcCCceE
Confidence            55  3332211111 1235789999999987776543                 46788889887776554443 23446


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCC-CCCCceeECCCC-CEEEE
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDG-SFWIA  280 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~dG-~lwva  280 (373)
                      .+++++++..++++...++.|..+|+...+..  ..+..... ..+..+++.+++ ++.++
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPA--SQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCE--EECC----CCCEEEEEECSSCTTEEEE
T ss_pred             EEEecCCCCCceeeecccccccccccccccee--eeeecceeeccceeeeecCCCCcceEE
Confidence            78999998778887777788999987543211  11111111 234456777644 56554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.70  E-value=1.7e-05  Score=73.07  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=54.0

Q ss_pred             CCEEEEe------cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC----------CCcEEEEe-cCC--
Q 017317           88 GVLYTAT------RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA----------DKGLLKVT-EEG--  146 (373)
Q Consensus        88 G~l~v~~------~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~----------~~gl~~~~-~~g--  146 (373)
                      ..+|+.+      .++.|+++| .+++..........|  ++++++||+ ||+++.          ...|..+| .++  
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~   93 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF   93 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence            4677754      257899999 556554322222333  789999995 899863          12377788 454  


Q ss_pred             cEEEeeccC-CccccccceeEEcCCC-cEEEEeC
Q 017317          147 VTVLASHVN-GSRINLADDLIAATDG-SIYFSVA  178 (373)
Q Consensus       147 ~~~l~~~~~-~~~~~~~~~l~~~~dG-~l~v~~~  178 (373)
                      ...+..... ......|.++++++|| .||+++.
T Consensus        94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A           94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred             EEEEEcCccccccCCCcceEEECCCCCEEEEECC
Confidence            333321100 0012468899999999 5888863

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.70  E-value=3.6e-06  Score=85.03  Aligned_cols=137  Identities=12%  Similarity=-0.006  Sum_probs=86.3

Q ss_pred             CCcceEEEecCCC-EEEEec-CC-----eEEEEE-cCCceEEeeeec-C------------------------ccccCeE
Q 017317           77 NGPEDVCVDRNGV-LYTATR-DG-----WIKRLH-KNGTWENWKLIG-G------------------------DTLLGIT  123 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~-~g-----~I~~~~-~~g~~~~~~~~~-~------------------------~p~~gl~  123 (373)
                      ..+.++++.+||+ |+++.. ++     .|+.++ .+|+........ .                        ... +++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeE
Confidence            3477889999987 445555 66     799998 455554433221 1                        145 899


Q ss_pred             ECCCCcE-EEEECCCcEEEEe-cCCc--EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCc
Q 017317          124 TTQENEI-LVCDADKGLLKVT-EEGV--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHG  198 (373)
Q Consensus       124 ~d~~g~L-~va~~~~gl~~~~-~~g~--~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g  198 (373)
                      +++||+. +++.. ..|+.++ .++.  +..  .... ....+..+++.|||+ |.++.                   .+
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~-~~~~~~~~~~SPDG~~la~~~-------------------~~  172 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTH-GEGFATDAKLSPKGGFVSFIR-------------------GR  172 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCC--BCCC-SSSCEEEEEECTTSSEEEEEE-------------------TT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEE--Eccc-CCcccccccCCCCCCEEEEEe-------------------CC
Confidence            9999974 44443 5678887 4331  111  0111 112467889999997 44442                   14


Q ss_pred             eEEEEeCCCCeEEEeecCCCC-----------------cceEEEccCCCEEEEEeC
Q 017317          199 KLLKYDPSLNETSILLDSLFF-----------------ANGVALSKDEDYLVVCET  237 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~~~~~~-----------------~~gi~~~~dg~~l~v~~~  237 (373)
                      .|+.+|.++++...+......                 ..+++|+|||+.|+++..
T Consensus       173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            799999888776654332221                 467999999998888753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.70  E-value=1.2e-05  Score=73.29  Aligned_cols=219  Identities=12%  Similarity=0.057  Sum_probs=133.0

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEc-CC--ceEE---eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cE
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NG--TWEN---WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g--~~~~---~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~  148 (373)
                      ..++++.++|.+. ++..++.|..++. .+  ....   +....+... .+.+.+++.+..+...+.+..++ .++  ..
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~  178 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE-EEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE-EEEECCCCcEEEEECCCcEEEEECCCCcEEE
Confidence            4567788887766 6778888888883 22  1121   112223344 66777778887777766677788 666  22


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~  227 (373)
                      .+.    + ....+..+++.++|.++++.+.                 .+.|..+|..+++......+ ....+.++|+|
T Consensus       179 ~~~----~-h~~~v~~~~~~~~~~~l~sg~~-----------------d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p  236 (340)
T 1got_B          179 TFT----G-HTGDVMSLSLAPDTRLFVSGAC-----------------DASAKLWDVREGMCRQTFTGHESDINAICFFP  236 (340)
T ss_dssp             EEC----C-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred             EEc----C-CCCceEEEEECCCCCEEEEEeC-----------------CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence            221    1 1124678999999988777543                 46788888877665443332 33457899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcc
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFP  306 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~  306 (373)
                      +++.++ +...++.|..|++....  ....+.. ........++++++|++.++....                      
T Consensus       237 ~~~~l~-s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----------------------  291 (340)
T 1got_B          237 NGNAFA-TGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD----------------------  291 (340)
T ss_dssp             TSSEEE-EEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETT----------------------
T ss_pred             CCCEEE-EEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCC----------------------
Confidence            998554 44556778888865421  1112211 111123457889999877665432                      


Q ss_pred             hhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeCC
Q 017317          307 KLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSLN  361 (373)
Q Consensus       307 ~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~~  361 (373)
                                  +.+..+| ..++.+..+....    ..++.+.+.. + .|.-|+..
T Consensus       292 ------------~~i~vwd~~~~~~~~~~~~h~----~~v~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          292 ------------FNCNVWDALKADRAGVLAGHD----NRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             ------------SEEEEEETTTCCEEEEEECCS----SCEEEEEECTTSSCEEEEETT
T ss_pred             ------------CeEEEEEcccCcEeeEeecCC----CcEEEEEEcCCCCEEEEEcCC
Confidence                        2356666 4577777776544    3467777763 3 45555543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.70  E-value=4.7e-06  Score=73.16  Aligned_cols=180  Identities=12%  Similarity=0.025  Sum_probs=110.2

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEc-C-CceEEeeeec--CccccCeEECCCCcEEEE-EC----CCcEEEEe-cCC
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-N-GTWENWKLIG--GDTLLGITTTQENEILVC-DA----DKGLLKVT-EEG  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~-~-g~~~~~~~~~--~~p~~gl~~d~~g~L~va-~~----~~gl~~~~-~~g  146 (373)
                      ....++++.++|..++...++.|+.++. + ++........  ..+. .+++.++|+.++. ..    ...|+.++ .++
T Consensus        42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            4467889999998775556889999994 4 5544433222  3456 8999999975443 31    24577777 445


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                       .+.+...      .....+++.+||+ |+++...               ...-.||.++..+++...+.........++
T Consensus       121 ~~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          121 TPRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             CCEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ceEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccce
Confidence             4443221      1256788999996 5544321               112368888887777766555445567899


Q ss_pred             EccCCCEEEEEeC--CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE-EEEe
Q 017317          225 LSKDEDYLVVCET--FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW-IAIL  282 (373)
Q Consensus       225 ~~~dg~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw-va~~  282 (373)
                      +++|++.++++..  ...+|+.++..+..   ...+. ........++++++|+.. ++..
T Consensus       180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERIT-DSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECC-CCSEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEe-cCCcccCCeEECCCCCEEEEEEc
Confidence            9999998887754  33456666544322   11221 111223457788999754 4443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.69  E-value=1.3e-05  Score=74.35  Aligned_cols=231  Identities=10%  Similarity=0.035  Sum_probs=136.8

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEcCCceEE-eeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEe
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNGTWEN-WKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLA  151 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~~~~-~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~  151 (373)
                      ...++++.++|.++ ++..+|.|..++.+++... +........ .+++.++++ |+++...+.+..++ .++  ...+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            45678899888755 7778899999996665433 322234456 899999987 45556556677777 566  23222


Q ss_pred             eccCC----------ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCc
Q 017317          152 SHVNG----------SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFA  220 (373)
Q Consensus       152 ~~~~~----------~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~  220 (373)
                      .....          .....+..+.+.+++.++++..                  .+.|..+|..+++...... .....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------------------KGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEECG------------------GGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC------------------CCeEEEEEcCCCceeeeeccCCCce
Confidence            11100          0001166788888888766643                  3788889887665433222 22344


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHH
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKH  300 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~  300 (373)
                      ..++++++++.++.+. .++.|..|++.....  ...+. ........+++.++|.++.+...+                
T Consensus       251 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~l~~~~~d~----------------  310 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNS--QNCFY-GHSQSIVSASWVGDDKVISCSMDG----------------  310 (425)
T ss_dssp             EEEEEETTTTEEEEEE-TTSCEEEECSSSBSC--SEEEC-CCSSCEEEEEEETTTEEEEEETTS----------------
T ss_pred             EEEEECCCCCEEEEEc-CCCEEEEEECCCCcc--ceEec-CCCccEEEEEECCCCEEEEEeCCC----------------
Confidence            6799999999555554 566788888654321  12221 222345667888888333333333                


Q ss_pred             HHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          301 LLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                                         .+..++. +++.+..+....+    .+..+... + ..|..++. ...|..+++.
T Consensus       311 -------------------~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~  360 (425)
T 1r5m_A          311 -------------------SVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAFM-DGQVNVYDLK  360 (425)
T ss_dssp             -------------------EEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEET-TSCEEEEECH
T ss_pred             -------------------cEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEEC-CCeEEEEECC
Confidence                               4666663 5666666654332    45666665 2 35666664 3457766653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.66  E-value=1.3e-05  Score=73.83  Aligned_cols=186  Identities=10%  Similarity=-0.023  Sum_probs=114.9

Q ss_pred             cCCcceEEEecCC-C-EEEEecCCeEEEEEc-CCceEEeee---ecCccccCeEECC-CCcE-EEEECCCcEEEEe-cCC
Q 017317           76 LNGPEDVCVDRNG-V-LYTATRDGWIKRLHK-NGTWENWKL---IGGDTLLGITTTQ-ENEI-LVCDADKGLLKVT-EEG  146 (373)
Q Consensus        76 ~~~P~~ia~d~~G-~-l~v~~~~g~I~~~~~-~g~~~~~~~---~~~~p~~gl~~d~-~g~L-~va~~~~gl~~~~-~~g  146 (373)
                      -....++++.++| . |.+++.+|.|..++. +++......   ..+... ++++.+ ++++ +.+...+.+..++ .+.
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGS  151 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence            3456778899887 4 557888999999993 444333322   234455 889988 5554 4455545566677 444


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEE
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVAL  225 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~  225 (373)
                       ...+.... + ....+..+++.++|.+.++.+.                 .+.|..+|..+.....+.........+++
T Consensus       152 ~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          152 VIQVFAKTD-S-WDYWYCCVDVSVSRQMLATGDS-----------------TGRLLLLGLDGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             EEEEEECCC-C-SSCCEEEEEEETTTTEEEEEET-----------------TSEEEEEETTSCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEeccC-C-CCCCeEEEEECCCCCEEEEECC-----------------CCCEEEEECCCCEEEEeccCCCcEEEEEE
Confidence             44433211 1 1134678999999986665432                 47888899865555554444455678999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCC-cceeEEecCCCCCCCceeECC-CCCEEEEEe
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAP-DGSFWIAIL  282 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~  282 (373)
                      +++++.++++...++.|..|++...+. ....... ...+....+++++ +|++.++..
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence            999985555555677899999864221 1111111 1234456788888 887655543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.65  E-value=2.7e-05  Score=73.74  Aligned_cols=178  Identities=13%  Similarity=0.130  Sum_probs=106.1

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEE-cCCc---e-EEeeee----------------------------------------
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGT---W-ENWKLI----------------------------------------  114 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~---~-~~~~~~----------------------------------------  114 (373)
                      .++++.++|++.++..++.|..++ .+|+   . ..+...                                        
T Consensus         8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (450)
T 2vdu_B            8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT   87 (450)
T ss_dssp             CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred             EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence            467888899977777788999988 5665   1 111100                                        


Q ss_pred             --------------cCccccCeEECCCCcEE-EEE-CCCcEEEEe-c--CC--cEEEeeccCCccccccceeEEcCCCcE
Q 017317          115 --------------GGDTLLGITTTQENEIL-VCD-ADKGLLKVT-E--EG--VTVLASHVNGSRINLADDLIAATDGSI  173 (373)
Q Consensus       115 --------------~~~p~~gl~~d~~g~L~-va~-~~~gl~~~~-~--~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l  173 (373)
                                    .+... +++++++|+.+ ++. ..+.+..++ .  ++  ...+.....   ...+.+++++++|..
T Consensus        88 ~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           88 AAKVPSPGLGAPPIYSYIR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---SKRPNAISIAEDDTT  163 (450)
T ss_dssp             ------------CCCCCEE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---SSCEEEEEECTTSSE
T ss_pred             CccccCCCCCCCccCCceE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC---CCCceEEEEcCCCCE
Confidence                          00245 78899999864 443 334466666 5  55  344322111   135678999999965


Q ss_pred             EEEeCCccccccccccccccccCCceEEEEeCCCCeEE-----EeecCCCCcceEEEccC---CCEEEEEeCCCCeEEEE
Q 017317          174 YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-----ILLDSLFFANGVALSKD---EDYLVVCETFKFRCLKY  245 (373)
Q Consensus       174 ~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-----~~~~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~  245 (373)
                      .++..                 ..|.++.++..+++..     .+.........++|+|+   ++.++.+ ..++.|..|
T Consensus       164 l~~~~-----------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-~~d~~i~vw  225 (450)
T 2vdu_B          164 VIIAD-----------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS-DRDEHIKIS  225 (450)
T ss_dssp             EEEEE-----------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE-ETTSCEEEE
T ss_pred             EEEEe-----------------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE-cCCCcEEEE
Confidence            54432                 2478888887655432     11222234567899999   7755544 456789999


Q ss_pred             EecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          246 WLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++.....  ...+...-.+....+++. +|++.++..
T Consensus       226 d~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          226 HYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             EESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEE
T ss_pred             ECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEe
Confidence            8764321  222221222345678888 888666544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.65  E-value=0.0001  Score=66.88  Aligned_cols=185  Identities=15%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cE
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~  148 (373)
                      -....++++.++|.+. +++.+|.|..++ .+++... +....+... ++++.+++++++ +...+.+..++ .++  ..
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  110 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA  110 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            3556789999988755 677899999998 5555433 322334456 899999887555 45444577777 556  33


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe----E--------EEeec-
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----T--------SILLD-  215 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~--------~~~~~-  215 (373)
                      .+.  .    ...+..+++.++|...++....            .....+.|..+|..++.    .        ..+.. 
T Consensus       111 ~~~--~----~~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B          111 TWK--S----PVPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             EEE--C----SSCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             Eee--c----CCCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            332  1    1346789999999766654320            00112456555543221    0        11111 


Q ss_pred             -CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          216 -SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       216 -~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                       .......++++++++.++++. .++.|..|++.... .....+. ...+....++++++|++.++..
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEec
Confidence             112456789999999666654 56789999875421 1122222 2233456788899998655543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.65  E-value=7.4e-06  Score=82.69  Aligned_cols=198  Identities=13%  Similarity=0.054  Sum_probs=110.0

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCC---ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEee
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNG---TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g---~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      ..++++.+||+..+...++.|+.++ .++   +...+........ .+++.+||+..+......|+.++ .++ ...+..
T Consensus       111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            4678899999855433348999999 444   4444433334566 88999999844433345688888 566 444322


Q ss_pred             ccCCc------------cccccceeEEcCCCc-EEEEeCCcccccccc----------------ccccccccCCceEEEE
Q 017317          153 HVNGS------------RINLADDLIAATDGS-IYFSVASTKFGLHNW----------------GLDLLEAKPHGKLLKY  203 (373)
Q Consensus       153 ~~~~~------------~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~----------------~~~~~~~~~~g~l~~~  203 (373)
                      .....            .+..+.+++++|||+ |+++..... ....+                .....+......|+.+
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            11100            011246789999995 666532110 00000                0000001112378889


Q ss_pred             eCCC-CeEEEeecC---CCCcceEEEccCCCEEEEEeC----CCCeEEEEEecCCCCcceeEEecCCCC---CCCceeEC
Q 017317          204 DPSL-NETSILLDS---LFFANGVALSKDEDYLVVCET----FKFRCLKYWLKGESKEQTEIFVENLPG---GPDNIKLA  272 (373)
Q Consensus       204 d~~~-~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~g---~p~~i~~d  272 (373)
                      |.++ ++...+...   ......++| |||+.|+++..    ....|+.+++.+.....  .+.....+   ....+++.
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV--LAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE--EEEEECSSCCCCCSCCEEC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE--EEEcCCCCcCCcCCceEEC
Confidence            9887 766554321   233467899 99998887653    23467777765433221  11111111   23578889


Q ss_pred             CCCCEEEEE
Q 017317          273 PDGSFWIAI  281 (373)
Q Consensus       273 ~dG~lwva~  281 (373)
                      +||+++++.
T Consensus       346 pdg~~~~~~  354 (741)
T 2ecf_A          346 DDGSILWSS  354 (741)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCeEEEEe
Confidence            999855544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.64  E-value=6.5e-05  Score=69.80  Aligned_cols=147  Identities=15%  Similarity=0.128  Sum_probs=91.7

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeee-ecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEEee
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      ..++++.++|.+. ++..++.|..++ .+++...... ...... .+++.++|+.++ +...+.+..++ .++ ......
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            3578888988766 677899999999 4444332222 233455 899999987554 45445566677 666 322211


Q ss_pred             ccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--------CCCCcceE
Q 017317          153 HVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--------SLFFANGV  223 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--------~~~~~~gi  223 (373)
                      .     ...+..+++.+ +|++.++.+.                 .+.|..+|..+++......        .......+
T Consensus       205 ~-----~~~v~~~~~~~~~~~~l~~~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v  262 (393)
T 1erj_A          205 I-----EDGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  262 (393)
T ss_dssp             C-----SSCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             c-----CCCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence            1     12456788888 7877666432                 4678888887665433221        11234679


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +|+++++.++ +...++.|..|++..
T Consensus       263 ~~~~~g~~l~-s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          263 VFTRDGQSVV-SGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EECTTSSEEE-EEETTSEEEEEEC--
T ss_pred             EECCCCCEEE-EEeCCCEEEEEECCC
Confidence            9999999554 445667888888753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.64  E-value=0.00015  Score=64.74  Aligned_cols=150  Identities=17%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cE
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~  148 (373)
                      -....++++.++|++. ++..++.|..++ .+++.. .+........ .+++.+++++++ +...+.+..++ .++  ..
T Consensus        65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  143 (312)
T 4ery_A           65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK  143 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence            3446778899988766 677899999998 445432 3332234455 888999887655 45555577777 555  33


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-c-CCCCcceEEEc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-D-SLFFANGVALS  226 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~-~~~~~~gi~~~  226 (373)
                      .+...     ...+..+++.++|.+.++.+.                 .+.|..+|..+++..... . .......++++
T Consensus       144 ~~~~~-----~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  201 (312)
T 4ery_A          144 TLPAH-----SDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS  201 (312)
T ss_dssp             EECCC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCSSCCCEEEEEEC
T ss_pred             EecCC-----CCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeeEEeccCCCceEEEEEC
Confidence            33211     124678899999987666432                 467888888766543322 2 22234568999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecC
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ++++.++.+ ..++.|..|++..
T Consensus       202 ~~~~~l~~~-~~d~~i~iwd~~~  223 (312)
T 4ery_A          202 PNGKYILAA-TLDNTLKLWDYSK  223 (312)
T ss_dssp             TTSSEEEEE-ETTTEEEEEETTT
T ss_pred             CCCCEEEEE-cCCCeEEEEECCC
Confidence            999966555 4567888888754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.63  E-value=2e-05  Score=73.47  Aligned_cols=173  Identities=13%  Similarity=0.086  Sum_probs=103.8

Q ss_pred             EEecCCCEE-EEecCCeEEEEEc-CCceEEee-eecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEEeeccC
Q 017317           83 CVDRNGVLY-TATRDGWIKRLHK-NGTWENWK-LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVLASHVN  155 (373)
Q Consensus        83 a~d~~G~l~-v~~~~g~I~~~~~-~g~~~~~~-~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l~~~~~  155 (373)
                      ++.++|.++ +++.+|.|..++. .++..... ...+... .+++.++|++++ +...+.+..++ .++  ...+...  
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--  180 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH--  180 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC--
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC--
Confidence            445677655 6778899999983 44433332 2234456 899999997554 45545577777 555  4444211  


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-------------------
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-------------------  216 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-------------------  216 (373)
                         ...+.++++.++|...++.+.                 .+.|..+|..+++.......                   
T Consensus       181 ---~~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          181 ---RATVTDIAIIDRGRNVLSASL-----------------DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             ---SSCEEEEEEETTTTEEEEEET-----------------TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred             ---CCcEEEEEEcCCCCEEEEEcC-----------------CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence               135778999999986665432                 36788888776664433321                   


Q ss_pred             ------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEE
Q 017317          217 ------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       217 ------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~  281 (373)
                            ......++++++++.++.+ ..++.|..|++....  ....+..........++++++|. +.++.
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAG-HVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEE-ETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             eeeecccCcccceEEcCCCCEEEEE-cCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                  1223456778999855555 456678899875432  11122211223456688899997 44443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.63  E-value=5.4e-05  Score=67.68  Aligned_cols=150  Identities=9%  Similarity=0.033  Sum_probs=94.8

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cE
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~  148 (373)
                      -..-.++++.|+|.+. ++..+|.|..++ .+++.. .+........ .+++.+++++.+ +...+.+..++ .++  ..
T Consensus        13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~   91 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (304)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            3456789999988765 677899999999 444332 2222223334 778888887555 45445566677 566  33


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEEeecC-CCCcceEEEc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDS-LFFANGVALS  226 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~-~~~~~gi~~~  226 (373)
                      .+...     ...+.++++.|++.+.++.+.                 .+.|..+|..++ .......+ ......++|+
T Consensus        92 ~~~~h-----~~~v~~~~~~~~~~~l~sgs~-----------------D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~  149 (304)
T 2ynn_A           92 DFEAH-----PDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (304)
T ss_dssp             EEECC-----SSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred             EEeCC-----CCcEEEEEEcCCCCEEEEECC-----------------CCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence            33211     135788999999987776543                 467777776554 33333332 3345789999


Q ss_pred             c-CCCEEEEEeCCCCeEEEEEecC
Q 017317          227 K-DEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       227 ~-dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      | +++ ++++...++.|..|++..
T Consensus       150 p~~~~-~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          150 PKDPS-TFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             TTCTT-EEEEEETTSEEEEEETTC
T ss_pred             CCCCC-EEEEEeCCCeEEEEECCC
Confidence            8 455 566666677888888753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.62  E-value=1.2e-05  Score=74.73  Aligned_cols=237  Identities=12%  Similarity=0.055  Sum_probs=137.1

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEcCC------ceEEeeeecCccccCeEECCC-CcEEE-EECCCcEEEEe-cCCc
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG------TWENWKLIGGDTLLGITTTQE-NEILV-CDADKGLLKVT-EEGV  147 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g------~~~~~~~~~~~p~~gl~~d~~-g~L~v-a~~~~gl~~~~-~~g~  147 (373)
                      ...++++.++|.++ ++..+|.|..++...      ....+........ .+++.++ +++++ +...+.+..++ .++.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            35678888877654 677889999998332      1222222234455 8899987 66554 44444566666 3332


Q ss_pred             ------EEEeeccCCccccccceeEEcCC-CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC----
Q 017317          148 ------TVLASHVNGSRINLADDLIAATD-GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----  216 (373)
Q Consensus       148 ------~~l~~~~~~~~~~~~~~l~~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----  216 (373)
                            ..............+.++++.++ +.++++.+.                 .+.|..+|..+++.......    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----------------SNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----------------SSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----------------CCCEEEEECCCCCcceEEeccccc
Confidence                  22111001112235778999998 577666442                 47788999887765443332    


Q ss_pred             ---CCCcceEEEccCCCEEEEEeCCCC---eEEEEEecCCCCcceeEEecCCCCCCCceeECC-CCCEEEEEecCCCchh
Q 017317          217 ---LFFANGVALSKDEDYLVVCETFKF---RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAILQLSSPGL  289 (373)
Q Consensus       217 ---~~~~~gi~~~~dg~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~~~~~~~~  289 (373)
                         ......++++|++..++++...++   .|..|++...... ...+..........+++++ +|++.++....     
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----  284 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-----  284 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEEEESS-----
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEEEeCC-----
Confidence               234578999999854565555555   7888987643211 1111101123345678887 77655554322     


Q ss_pred             hhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeCCCCeEE
Q 017317          290 EFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSLNTNFIG  366 (373)
Q Consensus       290 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~~~~~i~  366 (373)
                                                   +.+..+| .+++.+..+....+    .+..+.... + ++++..-....|.
T Consensus       285 -----------------------------g~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          285 -----------------------------NTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             -----------------------------SEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             -----------------------------CCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEE
Confidence                                         2466677 45777777765442    466666653 3 4444444455677


Q ss_pred             EeeCC
Q 017317          367 KLPLK  371 (373)
Q Consensus       367 ~~~l~  371 (373)
                      .+++.
T Consensus       332 iw~~~  336 (416)
T 2pm9_A          332 VQTLQ  336 (416)
T ss_dssp             EEESC
T ss_pred             EEEcc
Confidence            77765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.62  E-value=2.7e-06  Score=77.94  Aligned_cols=183  Identities=19%  Similarity=0.172  Sum_probs=108.9

Q ss_pred             cccceeEEcCCCcEEEEeCCccc-cccccccccccccCCceEEEEeCCC--CeEEEe-ecC------CCCcceEEEcc--
Q 017317          160 NLADDLIAATDGSIYFSVASTKF-GLHNWGLDLLEAKPHGKLLKYDPSL--NETSIL-LDS------LFFANGVALSK--  227 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~-~~~~~~~~~~~~~~~g~l~~~d~~~--~~~~~~-~~~------~~~~~gi~~~~--  227 (373)
                      ..+.+|+++++|.+|++... .+ ++..+     .....|.|+++|+++  .+.+.+ ..+      ...|.|+.+.+  
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~-~~pg~~~~-----~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~  123 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGL-KYPGIMSF-----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD  123 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECC-C----------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred             CCcceeEEcCCCeEEEEecc-ccCCCccc-----CCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence            46889999999999999732 11 11111     113468999999873  344433 222      24789999977  


Q ss_pred             CCC-EEEEEeCC--CCeEEEEEec--CCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHH
Q 017317          228 DED-YLVVCETF--KFRCLKYWLK--GESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLL  302 (373)
Q Consensus       228 dg~-~l~v~~~~--~~~i~~~~~~--~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~  302 (373)
                      |++ +|||++..  +.++..|.++  +........+.......|+++++|++|++|+++..-        ...|..+. .
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~--------ftd~~~~~-~  194 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY--------FIDPYLKS-W  194 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS--------CSSHHHHH-H
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE--------eCCccccc-c
Confidence            343 69999876  4455555543  322222222222233478999999999999997531        01122221 1


Q ss_pred             HhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          303 AAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       303 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                      ..       . ...+.|.++++++. +......   +  +..+.++..+ + .+||++......|.++++.
T Consensus       195 e~-------~-~~~~~g~vyr~d~~-~~~~~~~---~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          195 EM-------H-LGLAWSFVTYYSPN-DVRVVAE---G--FDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             HH-------H-TTCCCEEEEEECTT-CCEEEEE---E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             hh-------h-ccCCccEEEEEECC-eEEEeec---C--CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            10       0 13456889999984 4333222   1  3456667766 3 4899999999999999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.60  E-value=0.00029  Score=63.46  Aligned_cols=180  Identities=13%  Similarity=0.062  Sum_probs=107.5

Q ss_pred             cCCcceEEEecC----CC-EEEEecCCeEEEEE-cCCceEEe---eeecCccccCeEECCCCcEEEE-ECCCcEEEEe-c
Q 017317           76 LNGPEDVCVDRN----GV-LYTATRDGWIKRLH-KNGTWENW---KLIGGDTLLGITTTQENEILVC-DADKGLLKVT-E  144 (373)
Q Consensus        76 ~~~P~~ia~d~~----G~-l~v~~~~g~I~~~~-~~g~~~~~---~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~  144 (373)
                      -..-.++++.++    +. |..|+.++.|..++ .+++....   ........ .+.+.+++.+.++ ...+.+..++ .
T Consensus        32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~-~~~~~~~~~~l~s~s~D~~i~lWd~~  110 (321)
T 3ow8_A           32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRLWDLE  110 (321)
T ss_dssp             SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE-EEEECCCCCEEEEEeCCCcEEEEECC
Confidence            344566777653    33 55788899888888 34433221   11123345 7788888876654 4444566677 6


Q ss_pred             CC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcc
Q 017317          145 EG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (373)
Q Consensus       145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~  221 (373)
                      ++  ...+...     ...+..+++.|+|...++.+.                 .+.+..+|..+++..... .......
T Consensus       111 ~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~g~~-----------------dg~v~i~~~~~~~~~~~~~~~~~~v~  168 (321)
T 3ow8_A          111 NGKQIKSIDAG-----PVDAWTLAFSPDSQYLATGTH-----------------VGKVNIFGVESGKKEYSLDTRGKFIL  168 (321)
T ss_dssp             TTEEEEEEECC-----TTCCCCEEECTTSSEEEEECT-----------------TSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred             CCCEEEEEeCC-----CccEEEEEECCCCCEEEEEcC-----------------CCcEEEEEcCCCceeEEecCCCceEE
Confidence            66  3333211     124567899999987766542                 477888887766554332 3334457


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      .++++||++.+..+ ..++.|..|++...+  ....+. ........++++++|++.++..
T Consensus       169 ~~~~spdg~~lasg-~~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          169 SIAYSPDGKYLASG-AIDGIINIFDIATGK--LLHTLE-GHAMPIRSLTFSPDSQLLVTAS  225 (321)
T ss_dssp             EEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEEC-CCSSCCCEEEECTTSCEEEEEC
T ss_pred             EEEECCCCCEEEEE-cCCCeEEEEECCCCc--EEEEEc-ccCCceeEEEEcCCCCEEEEEc
Confidence            89999999965555 456678888865432  111221 2223456788999998766544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.60  E-value=1.8e-05  Score=73.30  Aligned_cols=203  Identities=14%  Similarity=0.107  Sum_probs=109.5

Q ss_pred             CCcceEEEecCCC-EEEEec--CCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cC-C-cE
Q 017317           77 NGPEDVCVDRNGV-LYTATR--DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EE-G-VT  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~--~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~-g-~~  148 (373)
                      ..|+.+++++||+ +|+++.  ++.|..+| .++++......++. . ++ +....+.| .....+.+..++ .+ + ..
T Consensus       137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~-~~-~P~g~~~~~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-Y-HI-FPTAPDTFFMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-E-EE-EEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-c-ee-ecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence            3699999999875 788873  68899999 45554322222221 1 11 11111222 222223344444 22 3 31


Q ss_pred             EEeec-cCCccccccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec----------C
Q 017317          149 VLASH-VNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD----------S  216 (373)
Q Consensus       149 ~l~~~-~~~~~~~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~----------~  216 (373)
                      ..... .........+...++ ++|++|+...                  .|.|+.+|..++..+....          .
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~------------------~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~  275 (386)
T 3sjl_D          214 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY------------------TGKIHQIDLSSGDAKFLPAVEALTEAERAD  275 (386)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEEEBT------------------TSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred             EeecceeccccccccccceeEcCCCcEEEEeC------------------CCEEEEEECCCCcceeecceeccccccccc
Confidence            11110 110001111223554 7887655432                  3789999987655433211          1


Q ss_pred             CCCcce---EEEccCCCEEEEEeC---------CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEec
Q 017317          217 LFFANG---VALSKDEDYLVVCET---------FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (373)
Q Consensus       217 ~~~~~g---i~~~~dg~~l~v~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~  283 (373)
                      ...|.|   ++++++++.+|++..         ..+.|..+|....+....  +.  +...|.++++++||+ ++++++.
T Consensus       276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~--i~--vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK--FE--MGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE--EE--EEEEECEEEECSSSSCEEEEEET
T ss_pred             cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE--EE--CCCCcceEEECCCCCeEEEEEcC
Confidence            122333   888999999999853         135799999765432221  11  123578999999996 5444433


Q ss_pred             CCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCC
Q 017317          284 LSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDP  337 (373)
Q Consensus       284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~  337 (373)
                      ..                                 +.+..+| ..++.+..+..+
T Consensus       352 ~~---------------------------------~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          352 GD---------------------------------KTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             TT---------------------------------TEEEEEETTTCCEEEEECCC
T ss_pred             CC---------------------------------CeEEEEECCCCcEEEEecCC
Confidence            21                                 2467778 578888888654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.59  E-value=1.3e-05  Score=73.61  Aligned_cols=176  Identities=11%  Similarity=0.076  Sum_probs=104.4

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEE---ee--eecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cE
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN---WK--LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~---~~--~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~  148 (373)
                      -.++++.+++.+.++..+|.|..++ .+++...   +.  ...+... .+++.++|++++ +...+.|..++ .++  ..
T Consensus        97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~  175 (357)
T 4g56_B           97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK-TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK  175 (357)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4678899999999999999998887 3333211   11  1123445 899999997655 45545577777 566  22


Q ss_pred             EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec---CCCCcceEE
Q 017317          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFANGVA  224 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~~gi~  224 (373)
                      .+..     ....++.+++.+++. ++++.+.                 .+.|..+|..+++......   .......++
T Consensus       176 ~~~~-----h~~~v~~v~~s~~~~~~~~s~~~-----------------dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~  233 (357)
T 4g56_B          176 SYNA-----HSSEVNCVAACPGKDTIFLSCGE-----------------DGRILLWDTRKPKPATRIDFCASDTIPTSVT  233 (357)
T ss_dssp             EECC-----CSSCEEEEEECTTCSSCEEEEET-----------------TSCEEECCTTSSSCBCBCCCTTCCSCEEEEE
T ss_pred             EEcC-----CCCCEEEEEEccCCCceeeeecc-----------------CCceEEEECCCCceeeeeeeccccccccchh
Confidence            2211     123567889988874 5555432                 4678888877665332221   122356789


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva  280 (373)
                      ++|++..++++...++.|..|++...+.  ...+. ........+++.++|.-+++
T Consensus       234 ~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~-~~~~~v~~l~~sp~~~~~la  286 (357)
T 4g56_B          234 WHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSA-VHSQNITGLAYSYHSSPFLA  286 (357)
T ss_dssp             ECTTSTTEEEEEESSSCEEEEESSCGGG--CEEEC-CCSSCEEEEEECSSSSCCEE
T ss_pred             hhhcccceEEEeecccceeEEECCCCcE--eEEEe-ccceeEEEEEEcCCCCCEEE
Confidence            9998766777666677899998754322  12222 12223456788888853333

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.58  E-value=4.3e-06  Score=82.08  Aligned_cols=178  Identities=11%  Similarity=0.032  Sum_probs=103.2

Q ss_pred             ceEEEecCCCEEEEec---CC--eEEEEEc--CCceEEeeeecCccccCeEECCCC--cEEEEECCCcEEEEe-cCC-cE
Q 017317           80 EDVCVDRNGVLYTATR---DG--WIKRLHK--NGTWENWKLIGGDTLLGITTTQEN--EILVCDADKGLLKVT-EEG-VT  148 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~---~g--~I~~~~~--~g~~~~~~~~~~~p~~gl~~d~~g--~L~va~~~~gl~~~~-~~g-~~  148 (373)
                      .++++.++..+|+++.   +.  .|+.++.  +|....+... .... ..++.++|  .+|++....++..++ .+| .+
T Consensus        68 ~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~  145 (582)
T 3o4h_A           68 LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGGLR  145 (582)
T ss_dssp             CEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             ccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCce-eeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence            4455666634444443   22  5666765  6654433221 1222 23444444  466666556667777 667 55


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      .+....      . .+++++|||+.+++.+.             .......|+++|.++++.+.+.........++|+||
T Consensus       146 ~l~~~~------~-~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpD  205 (582)
T 3o4h_A          146 ELARLP------G-FGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPG  205 (582)
T ss_dssp             EEEEES------S-CEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTT
T ss_pred             EeecCC------C-ceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCCCCceEeecCCCccccceECCC
Confidence            554321      1 68899999976554322             001124699999888887766544444578999999


Q ss_pred             CCEEEEEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCcee--------ECCCCCEEEEEec
Q 017317          229 EDYLVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIK--------LAPDGSFWIAILQ  283 (373)
Q Consensus       229 g~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~--------~d~dG~lwva~~~  283 (373)
                      |+.|+.++... ..|+++++++...   . ........+.+++        +++||.++++...
T Consensus       206 G~~l~~~~~~~~~~i~~~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          206 MKVTAGLETAREARLVTVDPRDGSV---E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             SCEEEEEECSSCEEEEEECTTTCCE---E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEccCCCeeEEEEEcCCCCcE---E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence            99888555433 2788888765432   2 2212222234456        8999988777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.58  E-value=2.7e-05  Score=72.27  Aligned_cols=178  Identities=9%  Similarity=0.026  Sum_probs=110.4

Q ss_pred             CCcceEEEecCCCE-EEEecCCeEEEEE-cCCceEEeeeec-Cc---------------cccCeEECCCCcEEEEECCCc
Q 017317           77 NGPEDVCVDRNGVL-YTATRDGWIKRLH-KNGTWENWKLIG-GD---------------TLLGITTTQENEILVCDADKG  138 (373)
Q Consensus        77 ~~P~~ia~d~~G~l-~v~~~~g~I~~~~-~~g~~~~~~~~~-~~---------------p~~gl~~d~~g~L~va~~~~g  138 (373)
                      ....++++.++|.. +++..+|.|..++ .+++........ ..               .. .+.+.+++.++++...+.
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  228 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDDDKFVIPGPKGA  228 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS-CCEEEETTEEEEECGGGC
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee-EEEEcCCCEEEEEcCCCe
Confidence            44667888887764 4777889999998 445432221111 11               55 888888888888776666


Q ss_pred             EEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317          139 LLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (373)
Q Consensus       139 l~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  215 (373)
                      +..++ .++  ...+..     ....+..+++.++|.++++.+.                 .+.|..+|..+++......
T Consensus       229 i~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~  286 (425)
T 1r5m_A          229 IFVYQITEKTPTGKLIG-----HHGPISVLEFNDTNKLLLSASD-----------------DGTLRIWHGGNGNSQNCFY  286 (425)
T ss_dssp             EEEEETTCSSCSEEECC-----CSSCEEEEEEETTTTEEEEEET-----------------TSCEEEECSSSBSCSEEEC
T ss_pred             EEEEEcCCCceeeeecc-----CCCceEEEEECCCCCEEEEEcC-----------------CCEEEEEECCCCccceEec
Confidence            88888 555  333321     1134678999999976665432                 4678888876654333222


Q ss_pred             -CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          216 -SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       216 -~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                       .......+++++++  ++++...++.|..|++....  ....+. ........++++++|++.++..
T Consensus       287 ~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          287 GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEE
Confidence             23345789999998  44444567789999875432  112222 2223456788899998665544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.57  E-value=5.4e-05  Score=77.02  Aligned_cols=181  Identities=10%  Similarity=0.066  Sum_probs=111.0

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCC--cE
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g--~~  148 (373)
                      -....++++.|+|... ++..+|.|..++ .+|+.. .+....+... ++++.++|++. ++...+.+..++ .++  ..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            3557889999988765 677889999999 555433 3332334456 89999999755 455545566777 666  33


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEEeec-CCCCcceEEEc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLD-SLFFANGVALS  226 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~-~~~~~~gi~~~  226 (373)
                      .+...     ...+..+++.++|...++.+.                 .|.|..+|.+++ ....... .......++|+
T Consensus        92 ~~~~~-----~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           92 DFEAH-----PDYIRSIAVHPTKPYVLSGSD-----------------DLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEECC-----SSCEEEEEECSSSSEEEEEET-----------------TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE
T ss_pred             EEecC-----CCCEEEEEEeCCCCEEEEEcC-----------------CCEEEEEECCCCceEEEEEcCCCCcEEEEEEE
Confidence            33211     135778999999975554322                 367878886655 3333332 23345789999


Q ss_pred             c-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC--CCCEEEEEe
Q 017317          227 K-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP--DGSFWIAIL  282 (373)
Q Consensus       227 ~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~--dG~lwva~~  282 (373)
                      | +++ ++++...++.|..|++......  ..+..........+++.+  +|.+.++..
T Consensus       150 p~~~~-~l~~~~~dg~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          150 PKDPS-TFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             TTEEE-EEEEEETTSEEEEEETTCSSCS--EEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             cCCCC-EEEEEeCCCeEEEEECCCCcce--eEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            9 666 5555556678989987543221  122212223455677776  787655543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.57  E-value=4.8e-05  Score=70.15  Aligned_cols=184  Identities=11%  Similarity=0.002  Sum_probs=109.1

Q ss_pred             CCcceEEEecC----C---CE-EEEecCCeEEEEE-cCCc------eEEeeee-----cCccccCeEEC----CCCcE-E
Q 017317           77 NGPEDVCVDRN----G---VL-YTATRDGWIKRLH-KNGT------WENWKLI-----GGDTLLGITTT----QENEI-L  131 (373)
Q Consensus        77 ~~P~~ia~d~~----G---~l-~v~~~~g~I~~~~-~~g~------~~~~~~~-----~~~p~~gl~~d----~~g~L-~  131 (373)
                      ....++++.++    |   .+ +++..+|.|..++ ..++      ...+...     ..... .+++.    ++++. +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            34577888887    7   54 4677889998888 3333      3333332     24456 88998    88875 4


Q ss_pred             -EEECCCcEEEEe-cC------C--cE-----EEee--ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccc
Q 017317          132 -VCDADKGLLKVT-EE------G--VT-----VLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEA  194 (373)
Q Consensus       132 -va~~~~gl~~~~-~~------g--~~-----~l~~--~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~  194 (373)
                       ++...+.+..++ ..      +  ..     .+..  .........+..+++.++| ++++.+                
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----------------  204 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----------------  204 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe----------------
Confidence             455555577777 55      3  33     2211  0001122357889999999 555543                


Q ss_pred             cCCceEEEEeCCCCeEEEeecC-------CCCcceEEEccCCCEEEEEeCCC---CeEEEEEecCCCCcceeEEecC---
Q 017317          195 KPHGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLVVCETFK---FRCLKYWLKGESKEQTEIFVEN---  261 (373)
Q Consensus       195 ~~~g~l~~~d~~~~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~---  261 (373)
                       ..+.|..+|..+++.......       ......++++++++.++++. .+   +.|..|++...+  ....+...   
T Consensus       205 -~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~--~~~~~~~~~~~  280 (397)
T 1sq9_A          205 -NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE--RIGSLSVPTHS  280 (397)
T ss_dssp             -TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC--EEEEECBC---
T ss_pred             -CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc--ccceeccCccc
Confidence             247899999887765544443       34557899999999666554 34   678888875432  12222210   


Q ss_pred             ---------CCCCCCceeECCCCCEEEEEe
Q 017317          262 ---------LPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       262 ---------~~g~p~~i~~d~dG~lwva~~  282 (373)
                               .......++++++|++.++..
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEe
Confidence                     123455688889998666544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.56  E-value=2.1e-05  Score=73.20  Aligned_cols=183  Identities=10%  Similarity=-0.012  Sum_probs=111.8

Q ss_pred             CCcceEEEec-CCCEE-EEecCCeEEEEE-cCCc--------eEEeeeecCccccCeEECCCC-cEE-EEECCCcEEEEe
Q 017317           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLH-KNGT--------WENWKLIGGDTLLGITTTQEN-EIL-VCDADKGLLKVT  143 (373)
Q Consensus        77 ~~P~~ia~d~-~G~l~-v~~~~g~I~~~~-~~g~--------~~~~~~~~~~p~~gl~~d~~g-~L~-va~~~~gl~~~~  143 (373)
                      ....++++.+ ++.++ +++.+|.|..++ .++.        ...+........ .+++.++| +++ .+...+.+..++
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEE
Confidence            3456788988 77666 677899999998 3432        223332334456 89999997 454 455555677788


Q ss_pred             -cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCC-
Q 017317          144 -EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLF-  218 (373)
Q Consensus       144 -~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~-  218 (373)
                       .++  ...+..  .+ ....+.++++.++|.++++.+.                 .+.|..+|..+++..... .... 
T Consensus       161 ~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~  220 (402)
T 2aq5_A          161 VGTGAAVLTLGP--DV-HPDTIYSVDWSRDGALICTSCR-----------------DKRVRVIEPRKGTVVAEKDRPHEG  220 (402)
T ss_dssp             TTTTEEEEEECT--TT-CCSCEEEEEECTTSSCEEEEET-----------------TSEEEEEETTTTEEEEEEECSSCS
T ss_pred             CCCCCccEEEec--CC-CCCceEEEEECCCCCEEEEEec-----------------CCcEEEEeCCCCceeeeeccCCCC
Confidence             666  222210  11 1235778999999976555432                 478999998877655433 2222 


Q ss_pred             -CcceEEEccCCCEEEEEe--CCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          219 -FANGVALSKDEDYLVVCE--TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       219 -~~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                       ....++++++++.++++.  ..++.|..|++...... ..............++++++|++.+.+
T Consensus       221 ~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          221 TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-LSLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-SEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-ceEEeccCCCceeEEEEcCCCCEEEEE
Confidence             357899999988444442  45678888887543221 111111122345667889999866443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.56  E-value=0.00012  Score=68.46  Aligned_cols=149  Identities=12%  Similarity=0.090  Sum_probs=96.8

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTV  149 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~  149 (373)
                      ....++++.+++.+. +++.+|.|..++ .+++.. .+........ .++++++|+++++ ...+.+..++ .++  ...
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence            445678899987766 677899999999 555543 3322234456 8999999986654 4444566666 444  222


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~d  228 (373)
                      +    .+ ....+..+++.|+|...++.+.                 .+.|..+|..+++...... .......+.++++
T Consensus       188 ~----~~-h~~~V~~v~~~p~~~~l~s~s~-----------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          188 M----HG-HDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             C----CC-CSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             E----cC-CCCCEEEEEEeCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence            2    11 1235788999999987766442                 4788888987776443332 2334567889999


Q ss_pred             CCEEEEEeCCCCeEEEEEecC
Q 017317          229 EDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ++ ++++...++.|..|++..
T Consensus       246 g~-~l~s~s~D~~v~vwd~~~  265 (410)
T 1vyh_C          246 GT-LIASCSNDQTVRVWVVAT  265 (410)
T ss_dssp             SS-EEEEEETTSCEEEEETTT
T ss_pred             CC-EEEEEcCCCeEEEEECCC
Confidence            98 455545567788888654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.56  E-value=1e-05  Score=72.62  Aligned_cols=214  Identities=12%  Similarity=0.138  Sum_probs=130.0

Q ss_pred             cceEEEecCCCEEE-Eec-------------CCeEEEEEcCCce-EEeeeecCccccCeEECCCCcEEEEE----CCCcE
Q 017317           79 PEDVCVDRNGVLYT-ATR-------------DGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENEILVCD----ADKGL  139 (373)
Q Consensus        79 P~~ia~d~~G~l~v-~~~-------------~g~I~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va~----~~~gl  139 (373)
                      +..+.++ ++.||. ...             ...|++++.+|.. +.+...  ... .++.+ .+.||.++    ....|
T Consensus        57 ~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--~~~-~~s~~-g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--PCI-YASLI-GNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--CEE-EEEEE-TTEEEEEEESSSSCEEE
T ss_pred             eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--Ccc-EEEEe-CCEEEEEeecCCCCceE
Confidence            3455555 567774 333             2478999977753 333221  111 23332 34688876    23468


Q ss_pred             EEEecCC--cEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC
Q 017317          140 LKVTEEG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (373)
Q Consensus       140 ~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  216 (373)
                      ++++.+|  .+.+.....         ++++++| .||+++..                 ...|++.+.+++..+.+..+
T Consensus       132 y~~~~dGs~~~~lt~~~~---------~~~~~~g~~iy~t~~g-----------------~~~Iy~~~l~g~~~~~l~~~  185 (302)
T 3s25_A          132 YRIRIDGEEKKKIKNHYL---------FTCNTSDRYFYYNNPK-----------------NGQLYRYDTASQSEALFYDC  185 (302)
T ss_dssp             EEEETTSCCCEEEESSCC---------CCSEEETTEEEEECTT-----------------TCCEEEEETTTTEEEEEECS
T ss_pred             EEEECCCCCeEEEeCCCc---------eEeeEECCEEEEEeCC-----------------CceEEEEECCCCCEEEEeCC
Confidence            8888444  555543211         2335555 79998642                 35799999887776666443


Q ss_pred             CCCcceEEEccCCCEEEEEeCCC-CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccC
Q 017317          217 LFFANGVALSKDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHT  294 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~  294 (373)
                         +....++|+++.|||++... ..|++.+++|...   .++...  ..|   .++++| .||.+.....         
T Consensus       186 ---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---~~Lt~~--~~~---~~~~~g~~Iy~~~~~~~---------  245 (302)
T 3s25_A          186 ---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---VVLTEA--NIE---HYNVYGSLIFYQRGGDN---------  245 (302)
T ss_dssp             ---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCC---EECSCS--CEE---EEEEETTEEEEEECSSS---------
T ss_pred             ---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCe---EEEeCC--Ccc---eEEECCCEEEEEECCCC---------
Confidence               22345679999999998653 6899999887532   222211  112   255556 4655543321         


Q ss_pred             ChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCCC
Q 017317          295 SKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKAT  373 (373)
Q Consensus       295 ~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~~  373 (373)
                                              ..|..++.+|...+.+...+      ...+...+++||........|.+++++++
T Consensus       246 ------------------------~~i~~~~~DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i~~~~~dGs  294 (302)
T 3s25_A          246 ------------------------PALCVVKNDGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKEYCTSTQNP  294 (302)
T ss_dssp             ------------------------CEEEEEETTSCCCEEEEESC------EEEEEECSSEEEEEETTTCCEEEEESSSC
T ss_pred             ------------------------cEEEEEECCCCccEEeeCCc------cceEEEeCCEEEEEECCCCeEEEEECCCC
Confidence                                    35788888887655554321      33566678999999998888999998753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.56  E-value=1.2e-05  Score=74.20  Aligned_cols=186  Identities=11%  Similarity=0.094  Sum_probs=110.7

Q ss_pred             cceEEEecCCCEE-EEe--cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEee
Q 017317           79 PEDVCVDRNGVLY-TAT--RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~--~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      ...+++.|||++. +++  .++.|..++ .+++........+... ++++.++|++++.....++..++ .++ ......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            4578999999865 555  568888888 4554433333345566 99999999987766667788887 555 222111


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-----eecCCCCcceEEEcc
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-----LLDSLFFANGVALSK  227 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-----~~~~~~~~~gi~~~~  227 (373)
                       ..+ ....+..+++.|+|...++.+..             ......++.++........     +.........++|+|
T Consensus       215 -~~~-~~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          215 -DFD-KNWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             -CCC-TTEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             -cCC-CCCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence             111 12346789999999876664320             0011245555544443321     222233346789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ||+.|..+ ..++.|..|++...+  ....+...-.+....+++.+||++.++...
T Consensus       280 dg~~lasg-s~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          280 KGELAVLA-SNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             TSCEEEEE-ETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             CCCceEEE-cCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            99955444 456778888865321  112222111234567899999998776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.55  E-value=6.3e-06  Score=76.09  Aligned_cols=203  Identities=12%  Similarity=-0.054  Sum_probs=109.2

Q ss_pred             eeEeccCCcCCcceEEEecCC-CEEEEe----------cCCeEEEEE-cCCceEEeeeec--------CccccCeEECCC
Q 017317           68 VTRLGEGILNGPEDVCVDRNG-VLYTAT----------RDGWIKRLH-KNGTWENWKLIG--------GDTLLGITTTQE  127 (373)
Q Consensus        68 ~~~~~~g~~~~P~~ia~d~~G-~l~v~~----------~~g~I~~~~-~~g~~~~~~~~~--------~~p~~gl~~d~~  127 (373)
                      +.++..|  ..| .++++++| .+|+++          .++.|.++| .+++.......+        ..|. ++++++|
T Consensus        59 ~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpD  134 (368)
T 1mda_H           59 LGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCAS  134 (368)
T ss_dssp             EEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTT
T ss_pred             EEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            3445555  458 89999966 688886          256799999 455543322222        4699 9999999


Q ss_pred             C-cEEEEECC-Cc-EEE--Ee-cCCcEEEeeccCCccccccc----eeEEcCCCcEEEEeCCc------ccccc---cc-
Q 017317          128 N-EILVCDAD-KG-LLK--VT-EEGVTVLASHVNGSRINLAD----DLIAATDGSIYFSVAST------KFGLH---NW-  187 (373)
Q Consensus       128 g-~L~va~~~-~g-l~~--~~-~~g~~~l~~~~~~~~~~~~~----~l~~~~dG~l~v~~~~~------~~~~~---~~-  187 (373)
                      | .|||++.. .. +..  +| .+ ...+..  .+.....+.    -++..+||++.+.+...      +....   .. 
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t-v~~i~v--~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~  211 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKS--ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE-EEEEEC--SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh-ceEEEC--CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence            9 59999753 33 444  45 22 222211  110000111    13334555433333221      00000   00 


Q ss_pred             ----------ccccccccCCceEEEEeCCCCeEEEeec----------CCCCcce---EEEccCCCEEEEEeC---C---
Q 017317          188 ----------GLDLLEAKPHGKLLKYDPSLNETSILLD----------SLFFANG---VALSKDEDYLVVCET---F---  238 (373)
Q Consensus       188 ----------~~~~~~~~~~g~l~~~d~~~~~~~~~~~----------~~~~~~g---i~~~~dg~~l~v~~~---~---  238 (373)
                                ......... +.++.+|..++..+....          ....|.|   +++++|++++||+..   .   
T Consensus       212 vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          212 CSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             BCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             CCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence                      000011112 567778875433222111          1223555   899999999999864   3   


Q ss_pred             --CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          239 --KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       239 --~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                        .+.+..+|....+...  .+  .....|.++++++||+ +|+++.
T Consensus       291 ~~~~~~~ViD~~t~~vv~--~i--~vg~~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSG--PI--SNGHDSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             SCEEEEEEEESSSCCEEE--CC--EEEEEECEEEECCSSSCEEEEEE
T ss_pred             ccCCCEEEEECCCCeEEE--EE--ECCCCcceEEECCCCCEEEEEcc
Confidence              3467788865433211  11  1123699999999996 899987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.53  E-value=0.00021  Score=66.36  Aligned_cols=180  Identities=12%  Similarity=0.014  Sum_probs=109.0

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeec-------------------CccccCeEECCCCcEEEE-EC
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIG-------------------GDTLLGITTTQENEILVC-DA  135 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~-------------------~~p~~gl~~d~~g~L~va-~~  135 (373)
                      ....++++.++|.+++...++.+..++ .+|+........                   .... .+++.++|+++++ ..
T Consensus        65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAE  143 (393)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcC
Confidence            345789999999987655567787777 455432211100                   0134 7889999976554 54


Q ss_pred             CCcEEEEe-cCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          136 DKGLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       136 ~~gl~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      .+.|..++ .++ . ..+.    + ....+.++++.++|...++.+.                 .+.|..+|..+++...
T Consensus       144 d~~i~iwd~~~~~~~~~~~----~-h~~~v~~~~~~p~~~~l~s~s~-----------------d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          144 DRLIRIWDIENRKIVMILQ----G-HEQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             TSCEEEEETTTTEEEEEEC----C-CSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEc----c-CCCCEEEEEEcCCCCEEEEecC-----------------CCcEEEEECCCCeeEE
Confidence            45566677 555 2 2221    1 1135778999999987666443                 4788888988777654


Q ss_pred             eecCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEe------cCCCCCCCceeECCCCCEEEEEe
Q 017317          213 LLDSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFV------ENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       213 ~~~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ..........+++++ +++ ++++...++.|..|+......  ...+.      ..-......++++++|++.++..
T Consensus       202 ~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             EEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence            444334456788998 777 445545667788888654321  11110      01112345578899998666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.53  E-value=2.9e-05  Score=71.55  Aligned_cols=195  Identities=16%  Similarity=0.194  Sum_probs=107.7

Q ss_pred             EEEecCCC-EEEEec-CC--eEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEEeec
Q 017317           82 VCVDRNGV-LYTATR-DG--WIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASH  153 (373)
Q Consensus        82 ia~d~~G~-l~v~~~-~g--~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l~~~  153 (373)
                      .++.|||+ |++... +|  .|+.++. .|+...+.........+.++.+||+ |+++.....++.++ .++ .+.+...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            35677886 444443 45  4888884 4555444333332221678999996 66666556788899 666 5444332


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCc--cccc-ccc--ccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc-
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVAST--KFGL-HNW--GLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK-  227 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~--~~~~-~~~--~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~-  227 (373)
                      ..+  .........++||++.++....  .+.. ..+  ............|+.+|.++++.+.+.........++++| 
T Consensus       121 ~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          121 PAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             CTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             hhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence            111  1111123457888776642110  0000 000  0011123344789999999888777665545567899999 


Q ss_pred             CCCEEEEEeCC-----CCeEEEEEecCCCCcceeEEecCCCC-CCCceeECCCCC-EEEEE
Q 017317          228 DEDYLVVCETF-----KFRCLKYWLKGESKEQTEIFVENLPG-GPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       228 dg~~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~dG~-lwva~  281 (373)
                      ||+.++++...     ..+|+.++.++....   .+.....+ .....++++||+ |+...
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~spdg~~l~~~~  256 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMR---KVKTHAEGESCTHEFWVPDGSALVYVS  256 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCCE---ESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCceE---EeeeCCCCcccccceECCCCCEEEEEe
Confidence            99877666543     347888887654321   12111111 122457889996 53433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.53  E-value=5.4e-05  Score=74.06  Aligned_cols=187  Identities=11%  Similarity=0.013  Sum_probs=108.8

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEE-cCC----c-eEEeeeecCc-cccCeEECC--CCcEEE-EECCCcEEEEe-cC
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNG----T-WENWKLIGGD-TLLGITTTQ--ENEILV-CDADKGLLKVT-EE  145 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g----~-~~~~~~~~~~-p~~gl~~d~--~g~L~v-a~~~~gl~~~~-~~  145 (373)
                      ..+.+++++++|++.+...++.|..++ .++    + ...+...... .. .+++.+  +|++++ +...+.+..++ .+
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            456789999999877544478899888 444    3 3333333344 56 899999  997555 45444455555 32


Q ss_pred             C------cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCC
Q 017317          146 G------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFF  219 (373)
Q Consensus       146 g------~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~  219 (373)
                      +      .........+ ....+.++++.++|+..++.+..             ....+.|+.+|.. .....+......
T Consensus        98 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~~-~~~~~~~~~~~~  162 (615)
T 1pgu_A           98 DKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDSG-NSLGEVSGHSQR  162 (615)
T ss_dssp             EGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTTC-CEEEECCSCSSC
T ss_pred             Ccccccccccccchhhc-ccccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEECC-CcceeeecCCcc
Confidence            2      1111111111 12357889999999766554320             1123678888732 333333333344


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCC---CCCceeECCC-CCEEEEEe
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPG---GPDNIKLAPD-GSFWIAIL  282 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g---~p~~i~~d~d-G~lwva~~  282 (373)
                      ...++|+++++.++++...++.|..|+....+  ....+. ....   ....++++++ |++.++..
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEe
Confidence            57899999998566666667788888854321  111221 1122   3456788999 87655443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.52  E-value=0.00034  Score=64.53  Aligned_cols=259  Identities=11%  Similarity=0.043  Sum_probs=128.0

Q ss_pred             CCcCCcceEEEecCCC-EEEEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEEEC-CCcEEEEe-cC---
Q 017317           74 GILNGPEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDA-DKGLLKVT-EE---  145 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~-~~gl~~~~-~~---  145 (373)
                      |--..-.++++.++|. |..++.+|.|..++ .+++.. .+........ .+++.++|++.++.. ...+..++ .+   
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~-~~~~s~~g~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM-ECAFAPNGQSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCC-CCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEE-EEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence            4334567888988776 44778899999999 444432 2222233455 788888887665432 23344443 21   


Q ss_pred             --C-c---EEEeeccC---Ccccc--cccee-EEcCCCcEEEEeCCcc-----c------cccc----------cccccc
Q 017317          146 --G-V---TVLASHVN---GSRIN--LADDL-IAATDGSIYFSVASTK-----F------GLHN----------WGLDLL  192 (373)
Q Consensus       146 --g-~---~~l~~~~~---~~~~~--~~~~l-~~~~dG~l~v~~~~~~-----~------~~~~----------~~~~~~  192 (373)
                        + .   ..+..+..   ...+.  ...-+ .-..||.+.+=|....     +      +-..          ....+.
T Consensus       143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  222 (380)
T 3iz6_a          143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI  222 (380)
T ss_dssp             CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred             ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence              1 0   00100000   00000  00112 2234554433221100     0      0000          001122


Q ss_pred             cccCCceEEEEeCC-CCe-EEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC------CCC
Q 017317          193 EAKPHGKLLKYDPS-LNE-TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN------LPG  264 (373)
Q Consensus       193 ~~~~~g~l~~~d~~-~~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~g  264 (373)
                      .+...+.|..+|.. +++ ...+.......+.++|+|+++ .+++...++.|..+++....  ....+...      ...
T Consensus       223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~  299 (380)
T 3iz6_a          223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELP  299 (380)
T ss_dssp             EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSC
T ss_pred             EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCc--EEEEecccccccccccC
Confidence            23345677777764 222 223322233457899999998 55666667788888875432  11222111      011


Q ss_pred             CCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceec
Q 017317          265 GPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMS  343 (373)
Q Consensus       265 ~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~  343 (373)
                      ....++++++|++.++....                                  +.+..+| ..++.+..+......+..
T Consensus       300 ~v~~~~~s~~g~~l~~g~~d----------------------------------g~i~vwd~~~~~~~~~~~~~~~~h~~  345 (380)
T 3iz6_a          300 IVTSVAFSISGRLLFAGYSN----------------------------------GDCYVWDTLLAEMVLNLGTLQNSHEG  345 (380)
T ss_dssp             SCSEEEECSSSSEEEEECTT----------------------------------SCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred             ceEEEEECCCCCEEEEEECC----------------------------------CCEEEEECCCCceEEEEecccCCCCC
Confidence            24568899999877665432                                  2356666 356666666332222234


Q ss_pred             ceeEEEEe-CC-EEEEeeCCCCeEEEeeCC
Q 017317          344 FVTSALEF-DD-HLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       344 ~~~~~~~~-~g-~L~vgs~~~~~i~~~~l~  371 (373)
                      .++.+... ++ .|..|+. ...|...++.
T Consensus       346 ~v~~l~~s~dg~~l~sgs~-D~~i~iW~~~  374 (380)
T 3iz6_a          346 RISCLGLSSDGSALCTGSW-DKNLKIWAFS  374 (380)
T ss_dssp             CCCEEEECSSSSEEEEECT-TSCEEEEECC
T ss_pred             ceEEEEECCCCCEEEEeeC-CCCEEEEecC
Confidence            57777776 34 4555554 3346666554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.51  E-value=9.1e-05  Score=68.58  Aligned_cols=139  Identities=6%  Similarity=-0.176  Sum_probs=86.2

Q ss_pred             CCEEEEec--CC---eEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC----------CCcEEEEe-cCC--c
Q 017317           88 GVLYTATR--DG---WIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA----------DKGLLKVT-EEG--V  147 (373)
Q Consensus        88 G~l~v~~~--~g---~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~----------~~gl~~~~-~~g--~  147 (373)
                      ..+|+.+.  .+   .|.++| .+++...... .+... ++++++||+ |||++.          .+.+..+| .+.  .
T Consensus        33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~-~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~  110 (373)
T 2mad_H           33 RRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI  110 (373)
T ss_pred             CEEEEeCCcccCCccEEEEEECCCCeEEEEec-CCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE
Confidence            34777653  22   778888 4455432222 23445 899999995 899863          23466787 444  2


Q ss_pred             EEEeeccCCc--cccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEE
Q 017317          148 TVLASHVNGS--RINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA  224 (373)
Q Consensus       148 ~~l~~~~~~~--~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~  224 (373)
                      ..+.......  ....|..++++||| .||+++..                ..+.|..+| ++++....  -...+..+.
T Consensus       111 ~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----------------~~~~v~viD-~t~~~~~~--~i~~~~~~~  171 (373)
T 2mad_H          111 ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVV-QGGSSDDQ--LLSSPTCYH  171 (373)
T ss_pred             EEEECCCccccccCCCccceEECCCCCEEEEEecC----------------CCCeEEEEE-CCCCEEeE--EcCCCceEE
Confidence            2221110000  01357899999999 58988632                135799999 88765432  023445567


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEe
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~  247 (373)
                      +.++++..|++.+..+++..++.
T Consensus       172 ~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          172 IHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EEeCCCceEEEEcCCCCEEEEEC
Confidence            77888778888888888888876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.50  E-value=0.00021  Score=66.45  Aligned_cols=177  Identities=8%  Similarity=-0.001  Sum_probs=111.7

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cC-C--cEEE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EE-G--VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~-g--~~~l  150 (373)
                      ...++++.++|.+. +++.+|.|..++ .+++. ..+........ .+.+++ ..|+.+...+.+..++ .. +  ...+
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~  213 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG-CLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTL  213 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEEET-TEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE-EEEECC-CEEEEEcCCCCEEEEecccCcceeeEE
Confidence            35678888877655 777899999998 44443 33332234445 777743 3455566555567777 42 3  2222


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~gi~~~~dg  229 (373)
                      ...     ...+.++++.++|.+.++.+.                 .+.|..+|..+++..... ........++++|++
T Consensus       214 ~~~-----~~~v~~~~~~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          214 QGH-----SSEVCGLAWRSDGLQLASGGN-----------------DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred             cCC-----CCCeeEEEEcCCCCEEEEEeC-----------------CCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence            211     135778999999987666432                 467888998766554333 333456789999988


Q ss_pred             CEEEEEeC--CCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          230 DYLVVCET--FKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       230 ~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ..++++..  .++.|..|++.....  ...+.  .......+++.++|++.+++.
T Consensus       272 ~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          272 SNLLATGGGTMDKQIHFWNAATGAR--VNTVD--AGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             TTEEEEECCTTTCEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             CCEEEEecCCCCCEEEEEECCCCCE--EEEEe--CCCcEEEEEECCCCCeEEEEe
Confidence            87888754  577888898754321  12221  223466788899998777754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.50  E-value=4.8e-06  Score=76.89  Aligned_cols=88  Identities=3%  Similarity=-0.217  Sum_probs=55.9

Q ss_pred             CCEEEEec-CC----eEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEEC----------CCcEEEEe-cCC--c
Q 017317           88 GVLYTATR-DG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDA----------DKGLLKVT-EEG--V  147 (373)
Q Consensus        88 G~l~v~~~-~g----~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~----------~~gl~~~~-~~g--~  147 (373)
                      .++|+.+. .+    .|..+| .+++.......+..|  ++++++|| .+||++.          .+.|..+| .++  .
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            56887664 33    788898 445544333344555  79999999 5999973          23477788 555  3


Q ss_pred             EEEeeccCCc---cccccceeEEcCCC-cEEEEeC
Q 017317          148 TVLASHVNGS---RINLADDLIAATDG-SIYFSVA  178 (373)
Q Consensus       148 ~~l~~~~~~~---~~~~~~~l~~~~dG-~l~v~~~  178 (373)
                      ..+... .+.   ....|..++++||| .+||++.
T Consensus       110 ~~I~v~-~~~~~~~g~~P~~ia~SpDGk~lyVan~  143 (368)
T 1mda_H          110 ADIELP-DAPRFSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             EEEEET-TSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             EEEECC-CccccccCCCcceEEEcCCCCEEEEEcc
Confidence            333211 011   12468899999999 6999864

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.49  E-value=4.5e-05  Score=68.44  Aligned_cols=213  Identities=13%  Similarity=0.197  Sum_probs=126.9

Q ss_pred             EEEecCCCEEEEe--cCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCcEEEEECC--------------CcEEEEec
Q 017317           82 VCVDRNGVLYTAT--RDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENEILVCDAD--------------KGLLKVTE  144 (373)
Q Consensus        82 ia~d~~G~l~v~~--~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~--------------~gl~~~~~  144 (373)
                      ++.+ ++.||+..  .+++|++++.+|. .+.+..  ..+. .|..+ ++.||.+...              ..|++++.
T Consensus        21 ~~~~-g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCES-DGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DTAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEEE-TTEEEEEEGGGTTEEEEEETTSCSCEEEEE--EEEE-EEEEC-SSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEEe-CCEEEEEeCCCCceEEEEcCCCCCCEEccC--Ccee-eEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            4444 88999765  4689999998874 343332  2234 55554 3457665332              35788884


Q ss_pred             CC--cEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc
Q 017317          145 EG--VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (373)
Q Consensus       145 ~g--~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~  221 (373)
                      +|  .+.+... .        +.++.++| .||+++.+              ......|++++.++...+.+.....   
T Consensus        96 dg~~~~~l~~~-~--------~~~~s~~g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~~~~---  149 (302)
T 3s25_A           96 NGHGSTVLDPD-P--------CIYASLIGNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKNHYL---  149 (302)
T ss_dssp             TSCCCEEEECS-C--------EEEEEEETTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEESSCC---
T ss_pred             CCCcceEeecC-C--------ccEEEEeCCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeCCCc---
Confidence            44  4554321 1        12344444 79998710              0124689999998766666544322   


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHH
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKH  300 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~  300 (373)
                       .+++++++.|||++.+...|++.+++|..   .+.+...    +....+.++| .||.+.+...               
T Consensus       150 -~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~---~~~l~~~----~~~~~~~P~g~~iy~t~~~~~---------------  206 (302)
T 3s25_A          150 -FTCNTSDRYFYYNNPKNGQLYRYDTASQS---EALFYDC----NCYKPVVLDDTNVYYMDVNRD---------------  206 (302)
T ss_dssp             -CCSEEETTEEEEECTTTCCEEEEETTTTE---EEEEECS----CEEEEEEEETTEEEEEEGGGT---------------
T ss_pred             -eEeeEECCEEEEEeCCCceEEEEECCCCC---EEEEeCC----CccceeeecCCEEEEEEcCCC---------------
Confidence             45688999999999878899999987642   2222211    2233455545 5666655431               


Q ss_pred             HHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEee-CCCCeEEEeeCCC
Q 017317          301 LLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGS-LNTNFIGKLPLKA  372 (373)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs-~~~~~i~~~~l~~  372 (373)
                                        ..|.+.+.+|.....+.+..      ...+...+++||..+ ...+.|.+++++.
T Consensus       207 ------------------~~I~~~~ldG~~~~~Lt~~~------~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          207 ------------------NAIVHVNINNPNPVVLTEAN------IEHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             ------------------TEEEEECSSSCCCEECSCSC------EEEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             ------------------cEEEEEECCCCCeEEEeCCC------cceEEECCCEEEEEECCCCcEEEEEECCC
Confidence                              13677787777666654311      123555567787763 3457788877765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.49  E-value=5.1e-05  Score=76.08  Aligned_cols=164  Identities=14%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             CeEEEEEc-CCceEEeeee---cCccccCeEECCCCc-EEEEECCC-----cEEEEe-cCC--cEEEeeccCCccccccc
Q 017317           97 GWIKRLHK-NGTWENWKLI---GGDTLLGITTTQENE-ILVCDADK-----GLLKVT-EEG--VTVLASHVNGSRINLAD  163 (373)
Q Consensus        97 g~I~~~~~-~g~~~~~~~~---~~~p~~gl~~d~~g~-L~va~~~~-----gl~~~~-~~g--~~~l~~~~~~~~~~~~~  163 (373)
                      ..|+.++. +++.......   ...+. .+++.+||+ |+++....     .++.++ .+|  .+.+.............
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLT-NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEE-EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEe-eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence            56788884 4444333211   12345 788999997 66543322     577788 555  33333221111111235


Q ss_pred             eeEEcC--CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcce-EEEccCCCEEEEEeCCCC
Q 017317          164 DLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANG-VALSKDEDYLVVCETFKF  240 (373)
Q Consensus       164 ~l~~~~--dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~g-i~~~~dg~~l~v~~~~~~  240 (373)
                      .+++.+  ||+++++...               .....||.++.+++..+.+..+...... +++++||+.++++....+
T Consensus       314 ~~~~sp~~dg~~l~~~~~---------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRR---------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             CCEECTTCSSEEEEEECT---------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             CceeecCCCCEEEEEEcc---------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            789999  9975544321               1235799999766666555433222334 789999999998876654


Q ss_pred             ----eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          241 ----RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       241 ----~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                          .|++++.++...   ..+. . ......+++++||+.++..
T Consensus       379 ~~~~~l~~~d~~~~~~---~~l~-~-~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          379 PLERHFYCIDIKGGKT---KDLT-P-ESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             TTCBEEEEEETTCCCC---EESC-C-SSSEEEEEECTTSSEEEEE
T ss_pred             CceEEEEEEEcCCCCc---eecc-C-CCceEEEEECCCCCEEEEE
Confidence                788887655321   2221 1 1224457788899865544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.48  E-value=1.2e-05  Score=75.10  Aligned_cols=176  Identities=14%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             EecCCCEEEEecCCeEEEEEc-C-C-ceEEee--eecCccccCeEECC--CCcEEEEECCC----cEEEEecCC--cEEE
Q 017317           84 VDRNGVLYTATRDGWIKRLHK-N-G-TWENWK--LIGGDTLLGITTTQ--ENEILVCDADK----GLLKVTEEG--VTVL  150 (373)
Q Consensus        84 ~d~~G~l~v~~~~g~I~~~~~-~-g-~~~~~~--~~~~~p~~gl~~d~--~g~L~va~~~~----gl~~~~~~g--~~~l  150 (373)
                      .|.+|.||+++..| +++++. + | .++...  ....... +|++|+  ++.||++....    +|++.+..|  .+.+
T Consensus        19 ~d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~   96 (394)
T 3b7f_A           19 ESGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEA   96 (394)
T ss_dssp             CCSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEEC
T ss_pred             CCCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceEC
Confidence            45578999999765 777764 3 2 455432  1123456 899998  78999987544    688776544  4544


Q ss_pred             eec--cCCc-------cccccceeEEcC---CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--
Q 017317          151 ASH--VNGS-------RINLADDLIAAT---DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--  216 (373)
Q Consensus       151 ~~~--~~~~-------~~~~~~~l~~~~---dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--  216 (373)
                      ...  ....       ....+.+|++++   .+.||++...                  ++|++.+..+...+.+...  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~------------------ggl~~S~DgG~tW~~~~~~~~  158 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP------------------QGLFRSTDHGASWEPVAGFND  158 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET------------------TEEEEESSTTSBCEECHHHHT
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecC------------------CcEEEEcCCCCCeEECcCccC
Confidence            321  1111       112345688885   5789997532                  6899987665555554221  


Q ss_pred             ---------------CC--CcceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC-----C-------CCC
Q 017317          217 ---------------LF--FANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL-----P-------GGP  266 (373)
Q Consensus       217 ---------------~~--~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~-------g~p  266 (373)
                                     ..  ....|++++ +.+.+|++.. ...|++..-.|.   +.+.+....     +       ...
T Consensus       159 ~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~---tW~~~~~~~~~~~~p~~~~~~g~~~  234 (394)
T 3b7f_A          159 HPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGT---DWKPLNRGCAANFLPDPNVEFGHDP  234 (394)
T ss_dssp             CTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTS---SCEECCTTCCCTTSSSSSSSSCBCE
T ss_pred             CccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCC---CceECCCCccccccCCCccccCcce
Confidence                           00  113577776 3455888753 345777642232   222221111     1       012


Q ss_pred             CceeECCC--CCEEEEEec
Q 017317          267 DNIKLAPD--GSFWIAILQ  283 (373)
Q Consensus       267 ~~i~~d~d--G~lwva~~~  283 (373)
                      ..++++++  +.+|+++..
T Consensus       235 ~~i~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          235 HCVVQHPAAPDILYQQNHC  253 (394)
T ss_dssp             EEEEECSSSTTEEEEEETT
T ss_pred             eEEEECCCCCCEEEEEcCC
Confidence            34677776  789998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=7.8e-05  Score=70.55  Aligned_cols=152  Identities=8%  Similarity=0.042  Sum_probs=93.8

Q ss_pred             CcceEEEecCCCEE--EEecCCeEEEEE-c--CCceE-Eee--eecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-
Q 017317           78 GPEDVCVDRNGVLY--TATRDGWIKRLH-K--NGTWE-NWK--LIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-  146 (373)
Q Consensus        78 ~P~~ia~d~~G~l~--v~~~~g~I~~~~-~--~g~~~-~~~--~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-  146 (373)
                      ...++++.++|..+  ++..+|.|..++ .  +++.. .+.  .....+. +++++++|+ |++++....++.++ .++ 
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN-AISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-EEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            46788999988763  566889999888 3  45433 222  2235566 899999996 55566545577777 444 


Q ss_pred             cEE-EeeccCCccccccceeEEcCC---CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-Eee-cCCCCc
Q 017317          147 VTV-LASHVNGSRINLADDLIAATD---GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL-DSLFFA  220 (373)
Q Consensus       147 ~~~-l~~~~~~~~~~~~~~l~~~~d---G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~-~~~~~~  220 (373)
                      ... ......+ ....+.++++.++   |.+.++.+.                 .+.|..+|..+++.. .+. ......
T Consensus       183 ~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~-----------------d~~i~vwd~~~~~~~~~~~~~h~~~v  244 (450)
T 2vdu_B          183 EEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDR-----------------DEHIKISHYPQCFIVDKWLFGHKHFV  244 (450)
T ss_dssp             CSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEET-----------------TSCEEEEEESCTTCEEEECCCCSSCE
T ss_pred             cccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcC-----------------CCcEEEEECCCCceeeeeecCCCCce
Confidence            211 0001111 1235778999999   866665432                 356777776655433 323 223445


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      ..++|+ +++.++.+ ..++.|..|++...
T Consensus       245 ~~~~~s-d~~~l~s~-~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          245 SSICCG-KDYLLLSA-GGDDKIFAWDWKTG  272 (450)
T ss_dssp             EEEEEC-STTEEEEE-ESSSEEEEEETTTC
T ss_pred             EEEEEC-CCCEEEEE-eCCCeEEEEECCCC
Confidence            789999 99855555 46678888887643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.47  E-value=6.9e-05  Score=70.54  Aligned_cols=185  Identities=11%  Similarity=0.073  Sum_probs=111.3

Q ss_pred             CCcceEEEecC-CCEE-EEecCCeEEEEEc-C----------Cc-eEEeeeecCccccCeEECCCCc-EEE-EECCCcEE
Q 017317           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLHK-N----------GT-WENWKLIGGDTLLGITTTQENE-ILV-CDADKGLL  140 (373)
Q Consensus        77 ~~P~~ia~d~~-G~l~-v~~~~g~I~~~~~-~----------g~-~~~~~~~~~~p~~gl~~d~~g~-L~v-a~~~~gl~  140 (373)
                      ..+.++++.++ +.++ +++.+|.|..++. .          .+ ...+........ ++++++++. +++ +...+.|.
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEE
Confidence            45788999986 5454 6778899999982 2          11 222222334456 999998886 555 44444566


Q ss_pred             EEe-cCC---cEEEe--eccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe----
Q 017317          141 KVT-EEG---VTVLA--SHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----  209 (373)
Q Consensus       141 ~~~-~~g---~~~l~--~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----  209 (373)
                      .++ ..+   ...+.  ....+ ....+.++++.+ ++.++++.+.                 .+.|..+|..++.    
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~~-----------------dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVAD-----------------DQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCSCSSSC
T ss_pred             EEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCCCCcc
Confidence            777 442   11111  11111 123578899998 5677766543                 4788888887552    


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          210 TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       210 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      ...+.......+.++|+++++.++++....+.|..|++..... ....+. ...+....+++.++|. ++++..
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFE-SHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEE-CCSSCEEEEEECSSCTTEEEEEE
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEee-cCCCCEEEEEECCCCCCEEEEEe
Confidence            2223233345678999999987787777788899999764221 122222 1223456688889884 455443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.47  E-value=0.00013  Score=68.26  Aligned_cols=226  Identities=12%  Similarity=0.108  Sum_probs=132.8

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEc-CCce-EEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~-~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l  150 (373)
                      ...++++.++|.+. +++.++.|..++. .++. ..+........ .+++.++|+.++ +...+.+..++ .++  ...+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            35678888888766 6778899999984 3332 22222233455 889999987555 45545566677 666  3333


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccC-
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKD-  228 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~d-  228 (373)
                      ...     ...+..+.+.++|.+.++.+.                 .+.|..+|..+++....... ......++|+|+ 
T Consensus       231 ~~h-----~~~v~~~~~~~~g~~l~s~s~-----------------D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  288 (410)
T 1vyh_C          231 TGH-----REWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPES  288 (410)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             eCC-----CccEEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence            211     124678889999988777543                 46787888776665443322 233456778775 


Q ss_pred             -------------------CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchh
Q 017317          229 -------------------EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGL  289 (373)
Q Consensus       229 -------------------g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~  289 (373)
                                         +. ++++...++.|..|++....  ....+. .-......++++++|++.++....     
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D-----  359 (410)
T 1vyh_C          289 SYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCADD-----  359 (410)
T ss_dssp             GGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEETT-----
T ss_pred             cccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEeCC-----
Confidence                               44 45555567788888865421  112222 122335568889999765554322     


Q ss_pred             hhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeCCCCeEE
Q 017317          290 EFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSLNTNFIG  366 (373)
Q Consensus       290 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~~~~~i~  366 (373)
                                                   +.+..+|. .++.+..+....    ..++.+.... + .|..|+. ...|.
T Consensus       360 -----------------------------~~i~vwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~l~sgs~-D~~i~  405 (410)
T 1vyh_C          360 -----------------------------KTLRVWDYKNKRCMKTLNAHE----HFVTSLDFHKTAPYVVTGSV-DQTVK  405 (410)
T ss_dssp             -----------------------------TEEEEECCTTSCCCEEEECCS----SCEEEEEECSSSSCEEEEET-TSEEE
T ss_pred             -----------------------------CeEEEEECCCCceEEEEcCCC----CcEEEEEEcCCCCEEEEEeC-CCcEE
Confidence                                         23566663 456566665433    3477777764 3 4554554 33454


Q ss_pred             Eee
Q 017317          367 KLP  369 (373)
Q Consensus       367 ~~~  369 (373)
                      ..+
T Consensus       406 vW~  408 (410)
T 1vyh_C          406 VWE  408 (410)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.47  E-value=1.5e-06  Score=83.38  Aligned_cols=74  Identities=18%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             ccccccceeEEcCCCcEEE-EeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEE
Q 017317          157 SRINLADDLIAATDGSIYF-SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLV  233 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v-~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~  233 (373)
                      ..++.|++|++|++|+||| +|.+  ++..    ...+...+..||++++++++++.++..  ...++|++|+||++.||
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~--~~~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGD--SSNA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCC--CCCS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCC--cCcc----ccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence            4678999999999999999 6654  2211    111222445899999998998887754  46789999999999999


Q ss_pred             EEe
Q 017317          234 VCE  236 (373)
Q Consensus       234 v~~  236 (373)
                      |+-
T Consensus       547 V~v  549 (592)
T 4a9v_A          547 VGI  549 (592)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.46  E-value=0.00036  Score=62.74  Aligned_cols=183  Identities=14%  Similarity=0.079  Sum_probs=106.1

Q ss_pred             CCcCCcceEEEecCC-C-EEEEecCCeEEEEEcCC---c----eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe
Q 017317           74 GILNGPEDVCVDRNG-V-LYTATRDGWIKRLHKNG---T----WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT  143 (373)
Q Consensus        74 g~~~~P~~ia~d~~G-~-l~v~~~~g~I~~~~~~g---~----~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~  143 (373)
                      |--....++++.+++ + |..++.++.|..++..+   +    ...+........ .+++.++|++.++ ...+.+..++
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEEE
Confidence            434445678888743 4 55788899998887321   1    112222223445 7889999976554 5445566677


Q ss_pred             -cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc
Q 017317          144 -EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA  220 (373)
Q Consensus       144 -~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~  220 (373)
                       .++  ...+...     ...+.++++.++|.+.++.+.                 .+.|..+|..+.....+.......
T Consensus        94 ~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~-----------------D~~i~vwd~~~~~~~~~~~h~~~v  151 (319)
T 3frx_A           94 VATGETYQRFVGH-----KSDVMSVDIDKKASMIISGSR-----------------DKTIKVWTIKGQCLATLLGHNDWV  151 (319)
T ss_dssp             TTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTSCEEEEECCCSSCE
T ss_pred             CCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCeEEEEeccCCcE
Confidence             666  3333211     134678999999987777543                 366777777655444443333344


Q ss_pred             ceEEEccCCC-----EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          221 NGVALSKDED-----YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       221 ~gi~~~~dg~-----~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ..+.+.|.+.     .++++...++.|..+++....  ....+. .-......+++.++|++.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~  215 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAG  215 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEe
Confidence            5677776432     145555566778888865321  111221 1123345678899998766544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.45  E-value=9.1e-05  Score=73.19  Aligned_cols=186  Identities=10%  Similarity=0.015  Sum_probs=108.1

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEc-CCce-EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cEEEe
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~~l~  151 (373)
                      ..|..++++|+|+..+...++.|..++. +++. ..+........ .+++.++|++.++ ...+.+..+| .++ .....
T Consensus        19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            4578889999998775444668888883 4443 33333334456 8999999987664 4444455666 444 21111


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCE
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDY  231 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~  231 (373)
                      . ..+. ...+.+++++|||...++.+..             ....+.|+.+|.. .....+.......+.++|+|++..
T Consensus        98 ~-~~~~-~~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~  161 (611)
T 1nr0_A           98 T-IPVF-SGPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPF  161 (611)
T ss_dssp             E-EECS-SSCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             e-eccc-CCceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCe
Confidence            1 1111 1357899999999876654320             0112567777743 222222222234578999999886


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++++...++.|..|+....  .....+. .-......+++.++|++.++..
T Consensus       162 ~l~s~s~D~~v~lwd~~~~--~~~~~l~-~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPF--KFKSTFG-EHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             EEEEEETTSCEEEEETTTB--EEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCC--eEeeeec-cccCceEEEEECCCCCEEEEEE
Confidence            6777667777888874321  1111221 1123455688999998766554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.44  E-value=3.4e-05  Score=71.07  Aligned_cols=154  Identities=10%  Similarity=-0.046  Sum_probs=90.2

Q ss_pred             eEEEecCCC-EEEEecCCeEEEEE-cCCceEEeeeecCc-cc-cCeEECCCCcEEEEE----------------------
Q 017317           81 DVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGD-TL-LGITTTQENEILVCD----------------------  134 (373)
Q Consensus        81 ~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~-p~-~gl~~d~~g~L~va~----------------------  134 (373)
                      ++++.++|+ |++...++.|+.++ ..|+.+.+...... .. ....++++|+++++.                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            467888886 55666677899999 44554433322221 11 023347888876642                      


Q ss_pred             -CCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcC-CCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCe
Q 017317          135 -ADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT-DGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (373)
Q Consensus       135 -~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~-dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  209 (373)
                       ....|+.++ .+| .+.+....     ....++.++| ||. |.+.....            .......|+.+|.++++
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~~-----~~~~~~~~sp~dg~~l~~~~~~~------------~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQEN-----QWLGHPIYRPYDDSTVAFCHEGP------------HDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEES-----SCEEEEEEETTEEEEEEEEECSC------------TTTSSCSEEEEETTSCC
T ss_pred             CCcceEEEEECCCCceEEeecCC-----ccccccEECCCCCCEEEEEEecC------------CCCCcceEEEEeCCCCc
Confidence             123578888 667 55554321     2356789999 985 44443210            00113579999988776


Q ss_pred             EEEeecCCC--CcceEEEccCCCEEEE-EeCCCC---eEEEEEecCCC
Q 017317          210 TSILLDSLF--FANGVALSKDEDYLVV-CETFKF---RCLKYWLKGES  251 (373)
Q Consensus       210 ~~~~~~~~~--~~~gi~~~~dg~~l~v-~~~~~~---~i~~~~~~~~~  251 (373)
                      .+.+.....  .....+|+|||+.|++ +.....   .|+++++.+.+
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            666544321  2345789999997754 443222   38888876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.44  E-value=2.5e-06  Score=71.78  Aligned_cols=157  Identities=12%  Similarity=0.026  Sum_probs=96.3

Q ss_pred             cccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEEc-CCce-------EEeeeec-CccccCeEECCCCcEEEEE
Q 017317           64 DIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK-NGTW-------ENWKLIG-GDTLLGITTTQENEILVCD  134 (373)
Q Consensus        64 ~l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~~-------~~~~~~~-~~p~~gl~~d~~g~L~va~  134 (373)
                      .+.++.++..+.+.....++++|+|.||+. .+|.++++++ ++.-       +.+-... ..-. .+.+|++|.||+..
T Consensus        28 ~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~-a~~fD~~G~LYav~  105 (236)
T 1tl2_A           28 WLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ-FLFFDPNGYLYAVS  105 (236)
T ss_dssp             HHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS-EEEECTTSCEEEEE
T ss_pred             hhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccce-EEEECCCCCEEEeC
Confidence            445677888766778899999999999976 8899999984 4221       2221111 1113 78899999999985


Q ss_pred             CCCcEEEEe-c-CC-cEEEee--ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe
Q 017317          135 ADKGLLKVT-E-EG-VTVLAS--HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (373)
Q Consensus       135 ~~~gl~~~~-~-~g-~~~l~~--~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  209 (373)
                      . ..|++++ + ++ ...+..  .+..........|.++|+|.||..+ .                  +.+++-.+-++.
T Consensus       106 d-G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-d------------------g~lyr~~~P~~~  165 (236)
T 1tl2_A          106 K-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-G------------------QQFYKALPPVSN  165 (236)
T ss_dssp             T-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-T------------------TEEEEECCCSST
T ss_pred             C-CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-C------------------CcEEecCCCCCC
Confidence            4 6688998 3 33 322211  1111122345789999999999886 4                  556654332111


Q ss_pred             -------EEEee-cCCCCcceEEEccCCCEEEEEeCCCCeEEEE
Q 017317          210 -------TSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLKY  245 (373)
Q Consensus       210 -------~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  245 (373)
                             .+.+. .+...-.-+.+++++. ||.++  +.++++.
T Consensus       166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~  206 (236)
T 1tl2_A          166 QDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYED  206 (236)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEE
T ss_pred             CcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEec
Confidence                   11111 1111122355888887 77776  5577765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.43  E-value=0.00031  Score=64.63  Aligned_cols=243  Identities=13%  Similarity=0.014  Sum_probs=133.8

Q ss_pred             cCCcCCcceEEEecCCCEEEEecCCeEEEEE-cCCc-------eEEeeeecCccccCeEECCC----C---cEEE-EECC
Q 017317           73 EGILNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGT-------WENWKLIGGDTLLGITTTQE----N---EILV-CDAD  136 (373)
Q Consensus        73 ~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~-------~~~~~~~~~~p~~gl~~d~~----g---~L~v-a~~~  136 (373)
                      .+.-....++++++ ..|++++.+|.|..++ ..++       ...+........ .+++.++    |   ++++ +...
T Consensus        13 ~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           13 KAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEE-EEEEecccccCCccccEEEEEcCC
Confidence            34344567788887 6777888999999999 4444       333333334445 8888888    7   6554 4554


Q ss_pred             CcEEEEe-cCC-c--EEEeeccCCcc----ccccceeEEc----CCCcE-EEEeCCccccccccccccccccCCceEEEE
Q 017317          137 KGLLKVT-EEG-V--TVLASHVNGSR----INLADDLIAA----TDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (373)
Q Consensus       137 ~gl~~~~-~~g-~--~~l~~~~~~~~----~~~~~~l~~~----~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~  203 (373)
                      +.|..++ .++ .  ..+.....+..    ...+..+++.    ++|.. +++.+.                 .+.|..+
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~iw  153 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV-----------------KGTTYIW  153 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET-----------------TSCEEEE
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC-----------------CCcEEEE
Confidence            5566666 433 2  11111112111    2457889999    99976 555432                 3566666


Q ss_pred             eCCC------C-eEE-----Eee-------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC---
Q 017317          204 DPSL------N-ETS-----ILL-------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN---  261 (373)
Q Consensus       204 d~~~------~-~~~-----~~~-------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---  261 (373)
                      |..+      + ...     .+.       ........+++++++  ++++...++.|..|++...+  ....+. .   
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~  228 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFE-SQHS  228 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEE-CCC-
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEe-cccc
Confidence            6543      2 111     221       123346789999999  45555567789999875421  122222 1   


Q ss_pred             C---CCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCC
Q 017317          262 L---PGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDP  337 (373)
Q Consensus       262 ~---~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~  337 (373)
                      .   ......++++++|++.++....                               ...+.+..+| .+++.+..+..+
T Consensus       229 h~~~~~~i~~i~~~~~~~~l~~~~~d-------------------------------~~~g~i~i~d~~~~~~~~~~~~~  277 (397)
T 1sq9_A          229 MINNSNSIRSVKFSPQGSLLAIAHDS-------------------------------NSFGCITLYETEFGERIGSLSVP  277 (397)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEE-------------------------------TTEEEEEEEETTTCCEEEEECBC
T ss_pred             ccccCCccceEEECCCCCEEEEEecC-------------------------------CCCceEEEEECCCCcccceeccC
Confidence            1   3345678889999865554321                               0013466677 457777776541


Q ss_pred             CC---------ceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          338 NG---------KVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       338 ~g---------~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                      ..         .+...+..+... + ..|..++. ...|..+++.
T Consensus       278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~  321 (397)
T 1sq9_A          278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVK  321 (397)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETT
T ss_pred             cccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcC
Confidence            00         012356677765 3 35555553 4457777764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.43  E-value=6.8e-05  Score=68.97  Aligned_cols=189  Identities=11%  Similarity=0.069  Sum_probs=120.0

Q ss_pred             cCCcceEEEecCCCEEEEe-c---------------CCeEEEEE-cCC--ce-EEeeee------cCccccCeEEC-C--
Q 017317           76 LNGPEDVCVDRNGVLYTAT-R---------------DGWIKRLH-KNG--TW-ENWKLI------GGDTLLGITTT-Q--  126 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~-~---------------~g~I~~~~-~~g--~~-~~~~~~------~~~p~~gl~~d-~--  126 (373)
                      +.+...+.+|+.|+||+-+ .               ..+|+.+| .++  +. +.+...      ..... .|++| .  
T Consensus        86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~~~  164 (381)
T 3q6k_A           86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVANP  164 (381)
T ss_dssp             SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEESCT
T ss_pred             eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEecccC
Confidence            7788899999999999633 1               12688888 444  43 333211      12345 78888 2  


Q ss_pred             -----CCcEEEEECC-CcEEEEe-cCC--cEEEeec----------cCCccc---cccceeEEcCC----C-cEEEEeCC
Q 017317          127 -----ENEILVCDAD-KGLLKVT-EEG--VTVLASH----------VNGSRI---NLADDLIAATD----G-SIYFSVAS  179 (373)
Q Consensus       127 -----~g~L~va~~~-~gl~~~~-~~g--~~~l~~~----------~~~~~~---~~~~~l~~~~d----G-~l~v~~~~  179 (373)
                           ++..||+|.. .||+.+| .+|  .+++...          ..|..+   ..+.+|+.+++    + .||+.-.+
T Consensus       165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls  244 (381)
T 3q6k_A          165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS  244 (381)
T ss_dssp             TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred             CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence                 3568999864 6899999 777  4544211          122222   35678888886    4 68998654


Q ss_pred             ccccccccccccccccCCceEEEEeCC-------CCeEEEeecCCCCcc--eEEEc-cCCCEEEEEeCCCCeEEEEEecC
Q 017317          180 TKFGLHNWGLDLLEAKPHGKLLKYDPS-------LNETSILLDSLFFAN--GVALS-KDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~g~l~~~d~~-------~~~~~~~~~~~~~~~--gi~~~-~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                                       +..+|++..+       ...++.+........  +++++ .+|. ||+++...+.|.+++.++
T Consensus       245 -----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          245 -----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             -----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETTS
T ss_pred             -----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCCC
Confidence                             1356666421       133444444332334  56676 5664 999999999999999665


Q ss_pred             -C-CCcceeEEec-CCCCCCCceeECCCCCEEEEEec
Q 017317          250 -E-SKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       250 -~-~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                       + +......+.. ..-..|+++.+|.+|.||+.++.
T Consensus       307 ~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          307 MPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             CSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             CccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence             2 1133444443 23347999999999999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.43  E-value=0.00063  Score=68.10  Aligned_cols=184  Identities=13%  Similarity=0.106  Sum_probs=112.1

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEE-EEECCCcEEEEec-CC-cEEE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVTE-EG-VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~~-~g-~~~l  150 (373)
                      ....++++.++|.+. +++.+|.|..++ .+++. ..+........ +++++++|+.+ .+...+.|..++. .. ...+
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence            445678899988766 677899999999 45543 23333334456 89999998654 4555555666663 33 2222


Q ss_pred             eeccCCccccccceeEEcCCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEcc
Q 017317          151 ASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSK  227 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~  227 (373)
                      .....+ ....+..+++.+++  .+.++.+                 ..+.|..+|..+++......+ ......+++++
T Consensus       510 ~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          510 SEGGEG-HRDWVSCVRFSPNTLQPTIVSAS-----------------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP  571 (694)
T ss_dssp             CSSTTS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             ccCCCC-CCCcEEEEEEeCCCCcceEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence            221111 12346788999886  3444433                 246788888877665544333 33457899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +++ ++++...++.|..+++...+    ....-........++++++|.+.++....
T Consensus       572 dg~-~l~sg~~Dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          572 DGS-LCASGGKDGVVLLWDLAEGK----KLYSLEANSVIHALCFSPNRYWLCAATEH  623 (694)
T ss_dssp             TSS-EEEEEETTSBCEEEETTTTE----EEECCBCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCC-EEEEEeCCCeEEEEECCCCc----eEEEecCCCcEEEEEEcCCCcEEEEEcCC
Confidence            998 45555566788888865431    11111122345668888998877766543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.41  E-value=0.00021  Score=65.02  Aligned_cols=185  Identities=10%  Similarity=-0.043  Sum_probs=109.9

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEe---eeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCC--c
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENW---KLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG--V  147 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~---~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g--~  147 (373)
                      ....++++.++|.++ +++.+|.|..++ .+++....   ........ .+++.++++++ ++...+.+..++ ..+  .
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            446778999888765 677889999998 45543222   12233455 88999988754 455545566666 443  2


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC------------------CCe
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS------------------LNE  209 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~------------------~~~  209 (373)
                      ..... ........+..+++.++|.++++.+.                 .+.|..+|..                  .++
T Consensus       132 ~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          132 WVCKH-IKKPIRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEE-ECTTCCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eeeee-eecccCCCeeEEEEcCCCCEEEEEcC-----------------CCCEEEEEcccccccccccccccccccchhh
Confidence            22211 11111235788999999976665432                 3667777732                  233


Q ss_pred             EE-EeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          210 TS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       210 ~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .. .+.........++++++++.++.+. .++.|..|++...+  ....+. ........++++++|++.++...+
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~  265 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAGHDC  265 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEETTS
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEEEeCC
Confidence            32 2222233457899999998665554 56789999876432  122222 112234567888888876666444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.41  E-value=4.8e-05  Score=70.81  Aligned_cols=148  Identities=9%  Similarity=0.020  Sum_probs=89.9

Q ss_pred             cceEEEecCCC-EEEEecCCeEEEEEcC-CceEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEEeec
Q 017317           79 PEDVCVDRNGV-LYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLASH  153 (373)
Q Consensus        79 P~~ia~d~~G~-l~v~~~~g~I~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l~~~  153 (373)
                      ..+++++++|. |+++..+|.|..++.. ++...... ........++.++|++++ +...+.+..++ .++ ...... 
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-  136 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-  136 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT-
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc-
Confidence            45788888554 6688889999999833 22111111 112221335677887554 45545577777 555 322211 


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYL  232 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~dg~~l  232 (373)
                        + ....+.++++.++|.+.++.+.                 .+.|..+|..+++... +.........++++++++.+
T Consensus       137 --~-h~~~v~~~~~~~~~~~l~s~s~-----------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  196 (420)
T 3vl1_A          137 --A-HVSEITKLKFFPSGEALISSSQ-----------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV  196 (420)
T ss_dssp             --S-SSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEE
T ss_pred             --c-ccCccEEEEECCCCCEEEEEeC-----------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEE
Confidence              1 1235788999999986665432                 4788888887665433 32233445789999999955


Q ss_pred             EEEeCCCCeEEEEEecC
Q 017317          233 VVCETFKFRCLKYWLKG  249 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~~  249 (373)
                      +.+ ..++.|..|++..
T Consensus       197 ~s~-~~d~~v~iwd~~~  212 (420)
T 3vl1_A          197 LSA-SLDGTIRLWECGT  212 (420)
T ss_dssp             EEE-ETTSCEEEEETTT
T ss_pred             EEE-cCCCcEEEeECCC
Confidence            544 4566788888653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.41  E-value=1.1e-05  Score=81.00  Aligned_cols=136  Identities=7%  Similarity=-0.071  Sum_probs=84.6

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC----ccccCeEECCCCcEE-EEECC---------CcEEEEe
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG----DTLLGITTTQENEIL-VCDAD---------KGLLKVT  143 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~----~p~~gl~~d~~g~L~-va~~~---------~gl~~~~  143 (373)
                      +.++++.++|.+++.+.+|.|+.++ .+|+.........    ... ++++++||+.. .+...         ..++.++
T Consensus        19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            5667777888865556778899888 4555444333222    255 78999999844 34321         3466777


Q ss_pred             -cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCC--
Q 017317          144 -EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLF--  218 (373)
Q Consensus       144 -~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~--  218 (373)
                       .++ .+.+... .+ ....+..++++|||+ |.++.                   .+.|+.+|.++++...+.....  
T Consensus        98 ~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~~~  156 (723)
T 1xfd_A           98 IPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKEG  156 (723)
T ss_dssp             SSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBTT
T ss_pred             CCCCceEeccCC-cc-ccccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCCCC
Confidence             566 5444321 11 112356789999995 54442                   1479999988776555433211  


Q ss_pred             -----------------CcceEEEccCCCEEEEEe
Q 017317          219 -----------------FANGVALSKDEDYLVVCE  236 (373)
Q Consensus       219 -----------------~~~gi~~~~dg~~l~v~~  236 (373)
                                       ...+++|+|||+.|+++.
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                             125799999999888765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.40  E-value=9.1e-05  Score=66.69  Aligned_cols=180  Identities=13%  Similarity=0.018  Sum_probs=104.8

Q ss_pred             CCcceEEEecCCCE-EEEecCCeEEEEE-cCCc----eEEeeeecCccccCeEECCCCc--EEEEECCCcEEEEec-CC-
Q 017317           77 NGPEDVCVDRNGVL-YTATRDGWIKRLH-KNGT----WENWKLIGGDTLLGITTTQENE--ILVCDADKGLLKVTE-EG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l-~v~~~~g~I~~~~-~~g~----~~~~~~~~~~p~~gl~~d~~g~--L~va~~~~gl~~~~~-~g-  146 (373)
                      ....++++.++|.+ ++++.+|.|..++ ..++    ............ .+++.++++  |+++...+.|..++- .. 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            44677888887765 4777899998888 4444    333333334556 889998888  555565555777764 44 


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC---------CeEEEeecC
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL---------NETSILLDS  216 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---------~~~~~~~~~  216 (373)
                       ...+...   .....+..+++.+ +.++++.+.                 .+.|..+|..+         ++.......
T Consensus        91 ~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T 1yfq_A           91 SFQALTNN---EANLGICRICKYG-DDKLIAASW-----------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             SEEECBSC---CCCSCEEEEEEET-TTEEEEEET-----------------TSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ceEecccc---CCCCceEEEEeCC-CCEEEEEcC-----------------CCeEEEEcccccccccccccCCeeeEEee
Confidence             3222110   0123567889998 766655432                 36777777543         221111112


Q ss_pred             CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC-CCCcceeEEecCCCCCCCceeECC-CCCEEEEEe
Q 017317          217 LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAP-DGSFWIAIL  282 (373)
Q Consensus       217 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~-dG~lwva~~  282 (373)
                      ......+++++++  ++++ +.++.|..|++.. ..... ..........+..+++.+ +|+++++..
T Consensus       150 ~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          150 KNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             CCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             CCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEe
Confidence            2334678888876  5555 4567899999765 32211 112212233456788888 887655544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.39  E-value=0.00045  Score=67.44  Aligned_cols=230  Identities=11%  Similarity=0.097  Sum_probs=134.5

Q ss_pred             cceEEEec--CCCEE-EEecCCeEEEEEc-CC--------ceE-EeeeecCccccCeEECCCCcEEEEECCC----c-EE
Q 017317           79 PEDVCVDR--NGVLY-TATRDGWIKRLHK-NG--------TWE-NWKLIGGDTLLGITTTQENEILVCDADK----G-LL  140 (373)
Q Consensus        79 P~~ia~d~--~G~l~-v~~~~g~I~~~~~-~g--------~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~~----g-l~  140 (373)
                      ..++++.+  +|.+. +++.+|.|..++. ++        +.. .+........ .+++.++|+.+++....    + ++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            67899999  88766 6778899988884 33        211 2222234455 89999999765543222    2 33


Q ss_pred             EEecCC--cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC
Q 017317          141 KVTEEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (373)
Q Consensus       141 ~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  217 (373)
                      .++ .+  ...+.    + ....+..+++.++|. +.++.+                 ..+.|..+|..+++........
T Consensus       146 ~~d-~~~~~~~~~----~-~~~~v~~~~~~~~~~~~l~~~~-----------------~d~~v~vwd~~~~~~~~~~~~~  202 (615)
T 1pgu_A          146 SWD-SGNSLGEVS----G-HSQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPPFKFSASDRTH  202 (615)
T ss_dssp             ETT-TCCEEEECC----S-CSSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTTBEEEEEECSS
T ss_pred             EEE-CCCcceeee----c-CCccEEEEEECCCCCcEEEEEe-----------------CCCcEEEEeCCCcceeeeeccc
Confidence            333 33  22221    1 123577899999996 555433                 2478888998776655444332


Q ss_pred             C----CcceEEEccC-CCEEEEEeCCCCeEEEEEecCCCCcceeEEec---CCCCCCCceeECCCCCEEEEEecCCCchh
Q 017317          218 F----FANGVALSKD-EDYLVVCETFKFRCLKYWLKGESKEQTEIFVE---NLPGGPDNIKLAPDGSFWIAILQLSSPGL  289 (373)
Q Consensus       218 ~----~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~g~p~~i~~d~dG~lwva~~~~~~~~~  289 (373)
                      .    ....++++++ ++.++.+. .++.|..|++...+  ....+..   ...+....+++. +|++.++....     
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----  273 (615)
T 1pgu_A          203 HKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-----  273 (615)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-----
T ss_pred             CCCCceEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcCC-----
Confidence            2    3568999999 88555554 46678888875432  1122211   122344567788 88766655432     


Q ss_pred             hhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEE
Q 017317          290 EFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGK  367 (373)
Q Consensus       290 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~  367 (373)
                                                   +.+..++. +++.+..+..........+..+.. .++.|..++.. ..|..
T Consensus       274 -----------------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~i~~  323 (615)
T 1pgu_A          274 -----------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-GTLNF  323 (615)
T ss_dssp             -----------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT-SCEEE
T ss_pred             -----------------------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC-CCEEE
Confidence                                         23566664 477777776543222233444444 45677777754 34666


Q ss_pred             eeCC
Q 017317          368 LPLK  371 (373)
Q Consensus       368 ~~l~  371 (373)
                      +++.
T Consensus       324 ~d~~  327 (615)
T 1pgu_A          324 YELG  327 (615)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            6654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.39  E-value=0.00039  Score=64.58  Aligned_cols=181  Identities=8%  Similarity=-0.024  Sum_probs=112.9

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEcC--Cc-eEEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEEe
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHKN--GT-WENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVLA  151 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~~--g~-~~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l~  151 (373)
                      ..+++++ +..+++++.+|.|..++..  +. ...+....+... ++++.++|++++ +...+.+..++ .++  ...+.
T Consensus       179 v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          179 VGCLSWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             EEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             eEEEEEC-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            3445564 3455578889999999833  22 233333344556 899999887554 45555677777 555  22221


Q ss_pred             eccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317          152 SHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~  230 (373)
                      .     ....+.++++.++| .++++.++               ...+.|..+|..+++.............++++++++
T Consensus       257 ~-----~~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          257 N-----HNAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSK  316 (401)
T ss_dssp             C-----CSSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSS
T ss_pred             C-----CcceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCC
Confidence            1     12356789999987 56665431               124789999988776555444445568899999999


Q ss_pred             EEEEEe-CCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          231 YLVVCE-TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       231 ~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      .++++. ..++.|..|++..........+. ...+....++++++|.+.++..
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAA  368 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEEC
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEe
Confidence            777764 35678888887653222221121 2234566788999998665543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.39  E-value=5.7e-06  Score=76.06  Aligned_cols=149  Identities=5%  Similarity=-0.041  Sum_probs=85.2

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCCceEE---eeeecCccccCeEECCCCcEE-EEECCCcEEEEe-cCCc--EE
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN---WKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEGV--TV  149 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~---~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g~--~~  149 (373)
                      -.++++.++|.+. +++.++.|..++ .++..+.   +....+... .+++.++|+++ .+...+.+..++ .++.  ..
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred             EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence            4678899988866 455788888888 3442222   222233455 88999988644 455545566666 4332  11


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe----EEEeec-CCCCcceEE
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE----TSILLD-SLFFANGVA  224 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~----~~~~~~-~~~~~~gi~  224 (373)
                      ... ..+ ....+..+++.++|++.++.+.                 .+.|..+|.++++    ...+.. .......++
T Consensus        93 ~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           93 TLV-LLR-LNRAATFVRWSPNEDKFAVGSG-----------------ARVISVCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             EEE-CCC-CSSCEEEEECCTTSSCCEEEES-----------------SSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             eeE-ecc-cCCceEEEEECCCCCEEEEEec-----------------CCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence            111 111 1235678899999975554332                 3667777776554    233332 234457899


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEec
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      ++++++.++.+ ..++.|..|++.
T Consensus       154 ~~~~~~~l~~~-~~d~~i~iwd~~  176 (377)
T 3dwl_C          154 WHPNNVLLAAG-CADRKAYVLSAY  176 (377)
T ss_dssp             ECTTSSEEEEE-ESSSCEEEEEEC
T ss_pred             EcCCCCEEEEE-eCCCEEEEEEEE
Confidence            99999855554 456678888874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.39  E-value=1.2e-05  Score=85.97  Aligned_cols=182  Identities=11%  Similarity=0.050  Sum_probs=113.0

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEe
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~  151 (373)
                      ....++++.++|... +++.+|.|..++ .+++............ .+++.+++.++.+...+.+..++ .++  ...+.
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc
Confidence            445678999887654 677889999999 4554443333334455 78888888888887766677788 666  34332


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDED  230 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~  230 (373)
                      ..     ...+.++++.++|...++.+.                 .+.|..+|..+++......+ ......++|++|++
T Consensus      1083 ~~-----~~~v~~~~~s~d~~~l~s~s~-----------------d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A         1083 CH-----QGTVLSCAISSDATKFSSTSA-----------------DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp             CC-----SSCCCCEEECSSSSSCEEECC-----------------SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred             cc-----CCcEEEEEECCCCCEEEEEcC-----------------CCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence            21     124678999999976665432                 35677777665543222222 22346789999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCC-cceeEE-----ecCCCCCCCceeECCCCCEEEEEe
Q 017317          231 YLVVCETFKFRCLKYWLKGESK-EQTEIF-----VENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~-~~~~~~-----~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      .+..+. .++.|..|++..... ......     .....+....+++++||.+.++..
T Consensus      1141 ~lat~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1141 LLATGD-DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             EEEEEE-TTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             EEEEEe-CCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence            555554 566788888764322 111000     011223467789999998766553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.38  E-value=0.0005  Score=60.73  Aligned_cols=229  Identities=13%  Similarity=0.046  Sum_probs=124.4

Q ss_pred             CCcCCcceEEEecCC-CEEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--
Q 017317           74 GILNGPEDVCVDRNG-VLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--  146 (373)
Q Consensus        74 g~~~~P~~ia~d~~G-~l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--  146 (373)
                      +.-....++++ ++| .|.+++.+|.|..++ .+++... +........ .+++.+++++++ +...+.+..++ .+.  
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN-SVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEE-EEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEE-EEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            33345667788 544 566788999999999 4444332 222334456 899999997555 45444455555 222  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEc
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~  226 (373)
                      .+.+.. ..+ ....+..+.+  ++.+.++.+                 ..+.|..+|.. .....+.........+++.
T Consensus        94 ~~~~~~-~~~-~~~~i~~~~~--~~~~l~~~~-----------------~d~~i~~~d~~-~~~~~~~~~~~~v~~~~~~  151 (313)
T 3odt_A           94 EDPLYT-LIG-HQGNVCSLSF--QDGVVISGS-----------------WDKTAKVWKEG-SLVYNLQAHNASVWDAKVV  151 (313)
T ss_dssp             SCC-CE-ECC-CSSCEEEEEE--ETTEEEEEE-----------------TTSEEEEEETT-EEEEEEECCSSCEEEEEEE
T ss_pred             CCcccc-hhh-cccCEEEEEe--cCCEEEEEe-----------------CCCCEEEEcCC-cEEEecccCCCceeEEEEc
Confidence            111111 111 1124566777  454444432                 24778888832 2233333333444567777


Q ss_pred             c-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhc
Q 017317          227 K-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAF  305 (373)
Q Consensus       227 ~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~  305 (373)
                      + +++.++.+ ..++.|..|+..    .....+..........+++.++|.+.++...+                     
T Consensus       152 ~~~~~~l~~~-~~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg---------------------  205 (313)
T 3odt_A          152 SFSENKFLTA-SADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG---------------------  205 (313)
T ss_dssp             ETTTTEEEEE-ETTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETTS---------------------
T ss_pred             cCCCCEEEEE-ECCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCCC---------------------
Confidence            7 77755555 456678888721    11222222133445667888888866655544                     


Q ss_pred             chhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          306 PKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       306 ~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                    .+..+| .+++.+..+....+    .++.+... +++|..++. ...|..+++.
T Consensus       206 --------------~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l~~~~~-dg~v~iwd~~  254 (313)
T 3odt_A          206 --------------LIKLVDMHTGDVLRTYEGHES----FVYCIKLLPNGDIVSCGE-DRTVRIWSKE  254 (313)
T ss_dssp             --------------EEEEEETTTCCEEEEEECCSS----CEEEEEECTTSCEEEEET-TSEEEEECTT
T ss_pred             --------------eEEEEECCchhhhhhhhcCCc----eEEEEEEecCCCEEEEec-CCEEEEEECC
Confidence                          355566 34666666654332    35666665 345665554 3446665554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.38  E-value=9.1e-06  Score=78.65  Aligned_cols=142  Identities=14%  Similarity=0.072  Sum_probs=89.8

Q ss_pred             eecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCCc-----------EEEeeccCCccccccceeEEcCCCcEEEEeC
Q 017317          113 LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEGV-----------TVLASHVNGSRINLADDLIAATDGSIYFSVA  178 (373)
Q Consensus       113 ~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g~-----------~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~  178 (373)
                      ..+..|+ |+.+++||+ +||++.. ..+..++ .+..           .+......   ...|..+++++||++|++..
T Consensus       274 pvg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~  349 (595)
T 1fwx_A          274 PIANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRGNAYTSLF  349 (595)
T ss_dssp             EEESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTSEEEEEET
T ss_pred             ecCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCCeEEEEEe
Confidence            3456799 999999997 6777543 3466666 3210           12222222   24688999999999999864


Q ss_pred             CccccccccccccccccCCceEEEEeCCC----------CeEEEeecCCCC------cceEEEccCCCEEEEEeCCC-Ce
Q 017317          179 STKFGLHNWGLDLLEAKPHGKLLKYDPSL----------NETSILLDSLFF------ANGVALSKDEDYLVVCETFK-FR  241 (373)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~~----------~~~~~~~~~~~~------~~gi~~~~dg~~l~v~~~~~-~~  241 (373)
                      -                 .+.|.++|.++          .++....+....      ..|+++++||++||+++... +|
T Consensus       350 l-----------------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          350 L-----------------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             T-----------------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             c-----------------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            2                 34666666543          222222222223      36788899999999999876 67


Q ss_pred             E-----------EEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          242 C-----------LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       242 i-----------~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                      +           ..|++++.+........ . ...|..+.+++...|
T Consensus       413 ~~~~gp~~~~~~ql~dis~~~m~lv~d~p-~-~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          413 FLNVGPLKPENDQLIDISGDKMVLVHDGP-T-FAEPHDAIAVHPSIL  457 (595)
T ss_dssp             SCCCCSSCCEEEEEEECSSSSCEEEEEEE-E-SSCCCCEEEECTTTT
T ss_pred             cccCCCCCCCcceEEEcCCCcEEEEEEEc-C-CCCCCceEEccHHHc
Confidence            7           78888776544332222 1 356888888776544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.36  E-value=2.9e-05  Score=73.19  Aligned_cols=184  Identities=11%  Similarity=0.037  Sum_probs=109.0

Q ss_pred             cceEEEec-CCC-EEEEecCCeEEEEEc-CCceEEeee---ecCccccCeEECC-CCcEEE-EECCCcEEEEe-cCC-cE
Q 017317           79 PEDVCVDR-NGV-LYTATRDGWIKRLHK-NGTWENWKL---IGGDTLLGITTTQ-ENEILV-CDADKGLLKVT-EEG-VT  148 (373)
Q Consensus        79 P~~ia~d~-~G~-l~v~~~~g~I~~~~~-~g~~~~~~~---~~~~p~~gl~~d~-~g~L~v-a~~~~gl~~~~-~~g-~~  148 (373)
                      -.+|++.| ++. |.+|+.+|.|..++. .++......   ..+... +|++.+ ++++++ +...+.|..+| +.+ .+
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            56789987 555 558889999999983 333222221   223455 899986 566554 44444566677 555 44


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      .+.....  .......++++++|.+.++.+.                 .|.|..+|.+++....+.........++|+|+
T Consensus       201 ~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~-----------------dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          201 VFASSDT--INIWFCSLDVSASSRMVVTGDN-----------------VGNVILLNMDGKELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             EEECCSS--CSCCCCCEEEETTTTEEEEECS-----------------SSBEEEEESSSCBCCCSBCCSSCEEEEEECTT
T ss_pred             EEeccCC--CCccEEEEEECCCCCEEEEEeC-----------------CCcEeeeccCcceeEEEecccceEEeeeecCC
Confidence            4432211  1124567899999987766432                 47788888775544333222334568999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++.++++...++.|..|++..............-......++++++|++.++..
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            887777766777888888754321111000001112234567888887665543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.36  E-value=0.0001  Score=66.69  Aligned_cols=179  Identities=8%  Similarity=-0.031  Sum_probs=102.8

Q ss_pred             CcceEEEecC----CCEEEEecCCeEEEEE-cCCc--eEEeeeecCccccCe------EECCCCcEEE-EECCCcEEEEe
Q 017317           78 GPEDVCVDRN----GVLYTATRDGWIKRLH-KNGT--WENWKLIGGDTLLGI------TTTQENEILV-CDADKGLLKVT  143 (373)
Q Consensus        78 ~P~~ia~d~~----G~l~v~~~~g~I~~~~-~~g~--~~~~~~~~~~p~~gl------~~d~~g~L~v-a~~~~gl~~~~  143 (373)
                      ...++++.++    ..|+++..+|.|..++ .+++  ...+........ .+      ++.+++++++ +...+.+..++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            3466777776    4566788899999998 3333  333332223334 55      3467776544 45545577777


Q ss_pred             -cCC---cEEEeeccCCccccccceeE----EcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317          144 -EEG---VTVLASHVNGSRINLADDLI----AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (373)
Q Consensus       144 -~~g---~~~l~~~~~~~~~~~~~~l~----~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  215 (373)
                       .++   ...+.. ..+.....+..++    +.++|++.++...                 .+.|..+|..+++......
T Consensus       146 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          146 PRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCAGYD-----------------NGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             TTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEEEET-----------------TSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEEEcc-----------------CCeEEEEECccCceeeecC
Confidence             443   233321 1222223455666    5678876665432                 4789999988877654444


Q ss_pred             CCCCcceEEEcc---CCCEEEEEeCCCCeEEEEEecCCCC-cceeEE-ecCCCCCCCceeECCCCC
Q 017317          216 SLFFANGVALSK---DEDYLVVCETFKFRCLKYWLKGESK-EQTEIF-VENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       216 ~~~~~~gi~~~~---dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~-~~~~~g~p~~i~~d~dG~  276 (373)
                      .......++++|   +++.++++ ..++.|..|++..... ...... ..........+++.++|.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence            445567899999   88866665 4567888888754321 111110 001223455677888887

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.36  E-value=0.0013  Score=59.02  Aligned_cols=179  Identities=10%  Similarity=0.100  Sum_probs=107.6

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cEEE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~~l  150 (373)
                      ..-.++++.++|... .++.++.|..++ .+++. ..+........ .+++++++.++++ ...+.+..++ ... ...+
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~  144 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL  144 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            345567888888765 677899999999 55543 33333334456 8899999876554 5445566666 433 3333


Q ss_pred             eeccCCccccccceeEEcCC------CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceE
Q 017317          151 ASHVNGSRINLADDLIAATD------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGV  223 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~d------G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi  223 (373)
                      ...     ...+..+.+.++      +.+.++.+                 ..+.|..+|..+.+......+ ....+.+
T Consensus       145 ~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  202 (319)
T 3frx_A          145 LGH-----NDWVSQVRVVPNEKADDDSVTIISAG-----------------NDKMVKAWNLNQFQIEADFIGHNSNINTL  202 (319)
T ss_dssp             CCC-----SSCEEEEEECCC------CCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred             ecc-----CCcEEEEEEccCCCCCCCccEEEEEe-----------------CCCEEEEEECCcchhheeecCCCCcEEEE
Confidence            211     123456666653      33444433                 246788888876665443332 3345789


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      +++|+++. +++...++.|..+++...+.  ...+.  .......+++.++|.+.++...
T Consensus       203 ~~sp~g~~-l~s~~~dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          203 TASPDGTL-IASAGKDGEIMLWNLAAKKA--MYTLS--AQDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             EECTTSSE-EEEEETTCEEEEEETTTTEE--EEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred             EEcCCCCE-EEEEeCCCeEEEEECCCCcE--EEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence            99999994 44445567888888654321  11221  1233556889999987666543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.36  E-value=0.00026  Score=64.46  Aligned_cols=182  Identities=9%  Similarity=0.076  Sum_probs=105.3

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEc-CCceE--E-eee-ecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEE
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTWE--N-WKL-IGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTV  149 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~~--~-~~~-~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~  149 (373)
                      -..+++.++|.+. ++..++.|..++. .++..  . ... ...... .+++.++|++++ +...+.+..++ ..+ .+.
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            4578999988766 6778899998883 34322  1 111 123345 899999997655 45445566666 444 333


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe-EE---EeecCCCCcceEEE
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE-TS---ILLDSLFFANGVAL  225 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~-~~---~~~~~~~~~~gi~~  225 (373)
                      +.. ..+. ...+.++++.|+|++.++.+.                 .+.|..+|..++. .+   .+.........+++
T Consensus        98 ~~~-~~~h-~~~v~~v~~sp~~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           98 VTT-LEGH-ENEVKSVAWAPSGNLLATCSR-----------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEE-ECCC-SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EEE-ccCC-CCCceEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            221 1221 235788999999987776543                 3556666654332 11   12222233567899


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +|+++.+..+ ..++.|..|+...........+. .-.+....++++++|++.++..
T Consensus       159 ~p~~~~l~s~-s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          159 HPSQELLASA-SYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             CSSSSCEEEE-ETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCEEEEE-eCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEe
Confidence            9999855444 45667888876543211111111 1123455688899998666543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.35  E-value=0.00032  Score=64.11  Aligned_cols=218  Identities=13%  Similarity=0.069  Sum_probs=126.8

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEcC-C-------ceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHKN-G-------TWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-  146 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~-g-------~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-  146 (373)
                      ..++++.++|... ++..++.+..++.. +       ....+....+... .+++.+++. |..+...+.+..++ .++ 
T Consensus       109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~D~~v~lwd~~~~~  187 (354)
T 2pbi_B          109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGDGTCALWDVESGQ  187 (354)
T ss_dssp             CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence            4568888888776 56678888887621 1       1122222233445 788888886 55556555566777 666 


Q ss_pred             -cEEEeeccCCccccccceeEEcC--CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcce
Q 017317          147 -VTVLASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANG  222 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~--dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~g  222 (373)
                       ...+...     ...+..+++.+  +|++.++.+.                 .+.|..+|..+++....... ....+.
T Consensus       188 ~~~~~~~h-----~~~v~~~~~~~~~~g~~l~sgs~-----------------Dg~v~~wd~~~~~~~~~~~~h~~~v~~  245 (354)
T 2pbi_B          188 LLQSFHGH-----GADVLCLDLAPSETGNTFVSGGC-----------------DKKAMVWDMRSGQCVQAFETHESDVNS  245 (354)
T ss_dssp             EEEEEECC-----SSCEEEEEECCCSSCCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             EEEEEcCC-----CCCeEEEEEEeCCCCCEEEEEeC-----------------CCeEEEEECCCCcEEEEecCCCCCeEE
Confidence             3333211     12345666665  5666655432                 47888999887765444333 334578


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC-CCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHH
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHL  301 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~  301 (373)
                      ++++|+++.+ ++...++.|..|++....  ....+.... ......++++++|++.++....                 
T Consensus       246 v~~~p~~~~l-~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----------------  305 (354)
T 2pbi_B          246 VRYYPSGDAF-ASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYND-----------------  305 (354)
T ss_dssp             EEECTTSSEE-EEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------------
T ss_pred             EEEeCCCCEE-EEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECC-----------------
Confidence            9999999854 444566778888875431  112222111 1123457788999876665432                 


Q ss_pred             HHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeC
Q 017317          302 LAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSL  360 (373)
Q Consensus       302 ~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~  360 (373)
                                       +.+..+| .+++.+..+....    ..++.+.+.. + .|..|+.
T Consensus       306 -----------------~~i~vwd~~~~~~~~~l~~h~----~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          306 -----------------YTINVWDVLKGSRVSILFGHE----NRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             -----------------SCEEEEETTTCSEEEEECCCS----SCEEEEEECTTSSCEEEEET
T ss_pred             -----------------CcEEEEECCCCceEEEEECCC----CcEEEEEECCCCCEEEEEcC
Confidence                             1255666 4677777665433    3577777763 4 4555554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.34  E-value=8.6e-05  Score=68.99  Aligned_cols=183  Identities=12%  Similarity=0.046  Sum_probs=113.2

Q ss_pred             CCcceEEEecCC-C-EEEEecCCeEEEEE-cCCceEEee---eecCccccCeEECCCCcE-EEEECCCcEEEEe-cCC--
Q 017317           77 NGPEDVCVDRNG-V-LYTATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENEI-LVCDADKGLLKVT-EEG--  146 (373)
Q Consensus        77 ~~P~~ia~d~~G-~-l~v~~~~g~I~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g--  146 (373)
                      ....++++.++| + |++++.+|.|..++ .+++.....   ....... .+++.++|++ +++...+.+..++ .++  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            446678898876 4 45778899999999 455433222   1234456 8999999864 4555555577777 566  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE---EEeecCCCCcceE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET---SILLDSLFFANGV  223 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~---~~~~~~~~~~~gi  223 (373)
                      ...+..   +.....+..+++.++|.++++...              ....+.|..+|..+++.   ............+
T Consensus       211 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          211 VAEKDR---PHEGTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEEEEC---SSCSSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeeecc---CCCCCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            222211   111223678899999987766410              01247888888775432   1112233446788


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecCCC--CcceeEEecCCCCCCCceeECCCCCEEE
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKGES--KEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~dG~lwv  279 (373)
                      +++++++.++++...++.|..|++....  ......+.  ..+...++++.++|.+.+
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCG
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEecccccce
Confidence            9999999888888778889999987543  22222221  224567788887776543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.34  E-value=0.001  Score=60.24  Aligned_cols=184  Identities=9%  Similarity=0.087  Sum_probs=106.2

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCCcEEEe
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEGVTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g~~~l~  151 (373)
                      ..-.++++.+++.+. .++.++.|..++ .+++. ..+........ ++++.++|+..+ +...+.+..++ ........
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSS  155 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence            345678888888765 677899999999 45543 33333334456 899999997554 45555566676 32222111


Q ss_pred             eccCCccccccceeEEcCCC----------cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcc
Q 017317          152 SHVNGSRINLADDLIAATDG----------SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFAN  221 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG----------~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~  221 (373)
                      .... .....+..+++.+++          .++++.+                 ..+.|..+|........+........
T Consensus       156 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~h~~~v~  217 (343)
T 2xzm_R          156 AEKE-NHSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLKVWNTNFQIRYTFKAHESNVN  217 (343)
T ss_dssp             CTTT-SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEEEEETTTEEEEEEECCSSCEE
T ss_pred             eccc-CCCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEEEEcCCCceeEEEcCccccce
Confidence            1111 112345677787776          3444332                 24778888854322222322233457


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      .++|+|+|+.| ++...++.|..|++...... ...+.  .......++++++|.+..+...
T Consensus       218 ~~~~s~~g~~l-~sgs~dg~v~iwd~~~~~~~-~~~~~--~~~~v~~v~~sp~~~~la~~~d  275 (343)
T 2xzm_R          218 HLSISPNGKYI-ATGGKDKKLLIWDILNLTYP-QREFD--AGSTINQIAFNPKLQWVAVGTD  275 (343)
T ss_dssp             EEEECTTSSEE-EEEETTCEEEEEESSCCSSC-SEEEE--CSSCEEEEEECSSSCEEEEEES
T ss_pred             EEEECCCCCEE-EEEcCCCeEEEEECCCCccc-ceeec--CCCcEEEEEECCCCCEEEEECC
Confidence            89999999955 44456678888887332211 11221  1123566888999887655444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=0.00039  Score=63.24  Aligned_cols=185  Identities=17%  Similarity=0.147  Sum_probs=105.8

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEcC-CceEE---eeeecCccccCeEECCC--CcEE-EEECCCcEEEEe-cCC-
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GTWEN---WKLIGGDTLLGITTTQE--NEIL-VCDADKGLLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~-g~~~~---~~~~~~~p~~gl~~d~~--g~L~-va~~~~gl~~~~-~~g-  146 (373)
                      ....++++.++|.+. ++..+|.|..++.+ +....   +....+... .+++.++  ++++ .+...+.+..++ .++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            445778899988765 66788999988832 22222   222223445 8888755  6544 555555577777 555 


Q ss_pred             cEEEeeccCCccccccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeCCCCe---EEEeecCCCCcc
Q 017317          147 VTVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFAN  221 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~~  221 (373)
                      ...+... .+ ....+.++++.++  |.+.++.+.                 .+.|..+|..++.   ...+........
T Consensus        91 ~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           91 WSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             eeEeeee-cC-CCcceEEEEeCCCCCCCEEEEecC-----------------CCcEEEEecCCCCceeeEEecCCCCceE
Confidence            3333221 11 1235778999998  876655432                 4678888876552   222223333456


Q ss_pred             eEEEcc-------------CCCEEEEEeCCCCeEEEEEecCCCCcc-eeEEecCCCCCCCceeECCC---CCEEEEEe
Q 017317          222 GVALSK-------------DEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENLPGGPDNIKLAPD---GSFWIAIL  282 (373)
Q Consensus       222 gi~~~~-------------dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~d~d---G~lwva~~  282 (373)
                      .++++|             +++.++.+ ..++.|..|++....... .........+....++++++   |++.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEEcCccccccccccCCCCCCEEEEE-eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            788998             67755544 456688889876433211 11111112234556888888   66555443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.32  E-value=0.00065  Score=72.59  Aligned_cols=185  Identities=12%  Similarity=0.065  Sum_probs=112.6

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cE
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VT  148 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~  148 (373)
                      ...-.++++.++|.+. +++.+|.|..++ .+++. ..+....+... +++++++|++.++ ...+.+..++ .++  ..
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            3446678999988766 677889999999 45543 33333334556 8999999976554 4444577777 666  33


Q ss_pred             EEeeccCCccccccceeEEcCCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEE
Q 017317          149 VLASHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVAL  225 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~  225 (373)
                      .+..     ....+..+++.+++  .+.++.+                 ..+.|..+|..+++......+ ......+++
T Consensus       694 ~~~~-----~~~~v~~~~~~~~~~~~~l~sg~-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~  751 (1249)
T 3sfz_A          694 TYDE-----HSEQVNCCHFTNKSNHLLLATGS-----------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRF  751 (1249)
T ss_dssp             EEEC-----CSSCEEEEEECSSSSCCEEEEEE-----------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEE
T ss_pred             EEcC-----CCCcEEEEEEecCCCceEEEEEe-----------------CCCeEEEEECCCcchhheecCCCCCEEEEEE
Confidence            3321     12346788888854  4544433                 246788888877765443332 334578999


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE----------ecCCCCCCCceeECCCCCEEEEEecC
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF----------VENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +|+++.++. .+.++.|..|++...........          ..........+++.++|...++...+
T Consensus       752 sp~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          752 SPDDELLAS-CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             CSSTTEEEE-EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             ecCCCEEEE-EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            999995544 45567888888754321110000          00111234567888999877766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.30  E-value=0.0003  Score=71.44  Aligned_cols=179  Identities=11%  Similarity=0.014  Sum_probs=108.6

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--c-E
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--V-T  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~-~  148 (373)
                      ....++++.++|... +++.+|.|..++ .+++.. .+....+... .+++.++|. |.++...+.+..++ .++  . .
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence            345778899987755 777899999999 555543 3332344556 899999996 44555545566677 444  2 2


Q ss_pred             EEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecC-CCCcceEEE
Q 017317          149 VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDS-LFFANGVAL  225 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~-~~~~~gi~~  225 (373)
                      .+...     ...+..+++.| +|.++++.+.                 .+.|..+|..+++... +... ......+++
T Consensus       135 ~~~~~-----~~~v~~~~~~p~~~~~l~~~~~-----------------dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~  192 (814)
T 3mkq_A          135 TFEGH-----EHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDY  192 (814)
T ss_dssp             EEECC-----SSCEEEEEEETTEEEEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCCCEEEE
T ss_pred             EEcCC-----CCcEEEEEEEcCCCCEEEEEeC-----------------CCeEEEEECCCCcceeEEecCCCCCEEEEEE
Confidence            22111     13467889998 7766555432                 4788888876554322 2222 245678899


Q ss_pred             cc--CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          226 SK--DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       226 ~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++  +++.++ +...++.|..|+.....  ....+. ...+....+++.++|.+.++..
T Consensus       193 ~~~~~~~~l~-~~~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          193 YPLPDKPYMI-TASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             CCSTTCCEEE-EECTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred             EECCCCCEEE-EEeCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence            98  888444 44566788888865432  112222 1223345678888987555543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.30  E-value=0.0008  Score=63.51  Aligned_cols=173  Identities=10%  Similarity=0.039  Sum_probs=97.4

Q ss_pred             eEEEecCCCEEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccC
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVN  155 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~  155 (373)
                      ++..+ ++.|.+++.+|.|..++ .+++... +....+... .+++.+++.|..+...+.+..++ .++  ...+...  
T Consensus       127 ~~~~~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h--  202 (464)
T 3v7d_B          127 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH--  202 (464)
T ss_dssp             EEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCC--
T ss_pred             EEEEC-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE-EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCC--
Confidence            45554 45666888999999999 5554332 222234455 88888888666777666677788 666  3332211  


Q ss_pred             CccccccceeEEc--CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE---------------------
Q 017317          156 GSRINLADDLIAA--TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---------------------  212 (373)
Q Consensus       156 ~~~~~~~~~l~~~--~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---------------------  212 (373)
                         ...+..+++.  +++.+.++.+.                 .+.|..+|..+++...                     
T Consensus       203 ---~~~v~~l~~~~~~~~~~l~s~s~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          203 ---NSTVRCLDIVEYKNIKYIVTGSR-----------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             ---SSCEEEEEEEESSSCEEEEEEET-----------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             ---CCccEEEEEecCCCCCEEEEEcC-----------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence               1245666666  56665555432                 3566666655443110                     


Q ss_pred             --eecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          213 --LLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       213 --~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                        ... .....-.+++++++.++.+. .++.|..|++...+  ....+. ........++++++|++.++..
T Consensus       263 ~~~~~-~~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          263 VGVLR-GHMASVRTVSGHGNIVVSGS-YDNTLIVWDVAQMK--CLYILS-GHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EEEEC-CCSSCEEEEEEETTEEEEEE-TTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEcc-CccceEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--EEEEec-CCCCCEEEEEEcCCCCEEEEEe
Confidence              011 11122345678888555554 56678888875321  112221 1223345678889987655543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.30  E-value=0.00011  Score=66.01  Aligned_cols=181  Identities=10%  Similarity=0.094  Sum_probs=105.0

Q ss_pred             CCcceEEEecCCC--EEEEecCCeEEEEEc-CC-ceEEeee--ecCccccCeEECCCCc-EEEEECCCcEEEEe-cC--C
Q 017317           77 NGPEDVCVDRNGV--LYTATRDGWIKRLHK-NG-TWENWKL--IGGDTLLGITTTQENE-ILVCDADKGLLKVT-EE--G  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~--l~v~~~~g~I~~~~~-~g-~~~~~~~--~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~--g  146 (373)
                      ....++++.++|.  |++++.+|.|..++. .. +...+..  ...... .+++.+ ++ |+.+...+.+..++ .+  +
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            4567788988887  668888999999985 44 4444433  334455 888888 65 44555555566666 33  1


Q ss_pred             -c----EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC-Ce--EEEee-cCC
Q 017317          147 -V----TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NE--TSILL-DSL  217 (373)
Q Consensus       147 -~----~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~--~~~~~-~~~  217 (373)
                       .    ........  ....+.++++.+++ ++++..                  .+.|..+|..+ +.  ..... ...
T Consensus       135 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~~~~~  193 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGMN------------------NSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             BCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEES------------------TTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             ccccccCCeeeEEe--eCCceEEEEecCCc-EEEEeC------------------CCeEEEEECCccccccceeeecCCC
Confidence             1    00000111  12346788888887 666543                  36888888775 32  22222 223


Q ss_pred             CCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCC--C--CcceeEEecCC--------CCCCCceeECCCCCEEEEE
Q 017317          218 FFANGVALSK-DEDYLVVCETFKFRCLKYWLKGE--S--KEQTEIFVENL--------PGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       218 ~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~--------~g~p~~i~~d~dG~lwva~  281 (373)
                      .....+++++ +++.++++. .++.+..++++..  .  ......+....        .+....++++++|++.++.
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  269 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             CceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence            3457899999 998555554 5677888776543  1  11222222111        1134567888988754443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.29  E-value=0.00082  Score=59.33  Aligned_cols=224  Identities=13%  Similarity=0.071  Sum_probs=131.5

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEc-CC---c-eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC--cE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG---T-WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG--VT  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g---~-~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~  148 (373)
                      ....++++.++|.+. ++..+|.|..++. +.   + ...+........ .+.++ .+.|+++...+.+..++ .+  ..
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~l~~~~~d~~i~~~d-~~~~~~  136 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC-SLSFQ-DGVVISGSWDKTAKVWK-EGSLVY  136 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE-EEEEE-TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE-EEEec-CCEEEEEeCCCCEEEEc-CCcEEE
Confidence            445678898877765 6778898888872 21   2 222222233445 77774 33455566555555665 33  23


Q ss_pred             EEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEc
Q 017317          149 VLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALS  226 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~  226 (373)
                      .+...     ...+..+.+.+ ++...++.+.                 .+.|..+|.. .....+.. .......++++
T Consensus       137 ~~~~~-----~~~v~~~~~~~~~~~~l~~~~~-----------------d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~  193 (313)
T 3odt_A          137 NLQAH-----NASVWDAKVVSFSENKFLTASA-----------------DKTIKLWQND-KVIKTFSGIHNDVVRHLAVV  193 (313)
T ss_dssp             EEECC-----SSCEEEEEEEETTTTEEEEEET-----------------TSCEEEEETT-EEEEEECSSCSSCEEEEEEE
T ss_pred             ecccC-----CCceeEEEEccCCCCEEEEEEC-----------------CCCEEEEecC-ceEEEEeccCcccEEEEEEc
Confidence            22211     12456677766 6765555332                 4678888843 22222222 33445789999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcc
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFP  306 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~  306 (373)
                      +++. ++ +...++.|..|++...+  ....+. ...+....++++++|.+..+...+                      
T Consensus       194 ~~~~-~~-~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg----------------------  246 (313)
T 3odt_A          194 DDGH-FI-SCSNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGEDR----------------------  246 (313)
T ss_dssp             ETTE-EE-EEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETTS----------------------
T ss_pred             CCCe-EE-EccCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecCC----------------------
Confidence            9987 44 44456789999875432  122222 223345678899999877666554                      


Q ss_pred             hhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          307 KLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       307 ~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                   .+..+| .+++.+..+..+.+    .+..+... ++++..++. ...|..+++.
T Consensus       247 -------------~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~-dg~i~iw~~~  295 (313)
T 3odt_A          247 -------------TVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIVGSS-DNLVRIFSQE  295 (313)
T ss_dssp             -------------EEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEEEET-TSCEEEEESC
T ss_pred             -------------EEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEEEeC-CCcEEEEeCC
Confidence                         467777 56777777765543    46777765 456666665 4457777765

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.28  E-value=0.00067  Score=61.31  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=89.7

Q ss_pred             cceEEEecC----CC-EEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECC-CCcEEE-EECCCcEEEEe-cCC-c
Q 017317           79 PEDVCVDRN----GV-LYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQ-ENEILV-CDADKGLLKVT-EEG-V  147 (373)
Q Consensus        79 P~~ia~d~~----G~-l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~-~g~L~v-a~~~~gl~~~~-~~g-~  147 (373)
                      ..++++.++    |. |+++..+|.|..++ .+++... +........ .+++.+ ++++++ +...+.|..++ .++ .
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  150 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDTL  150 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence            566778776    44 45788899999998 4455433 322334456 899998 777554 45555677778 666 2


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec------------
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD------------  215 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~------------  215 (373)
                      ........+ ....+.++++.++|...++.+.                 .+.|..+|..+++......            
T Consensus       151 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  212 (366)
T 3k26_A          151 VAIFGGVEG-HRDEVLSADYDLLGEKIMSCGM-----------------DHSLKLWRINSKRMMNAIKESYDYNPNKTNR  212 (366)
T ss_dssp             EEEECSTTS-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred             EEEeccccc-ccCceeEEEECCCCCEEEEecC-----------------CCCEEEEECCCCccccccceeEEecCCCCcc
Confidence            222111111 1235788999999976665432                 3677777776543211000            


Q ss_pred             -----------------CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          216 -----------------SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       216 -----------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                                       .......++++  ++ ++++...++.|..|++...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESST
T ss_pred             cccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCc
Confidence                             12223567777  55 5555566788999987643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.28  E-value=0.00058  Score=63.91  Aligned_cols=186  Identities=10%  Similarity=0.108  Sum_probs=106.0

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEE-cCCc------------eEEeeeec------------CccccCeEECCCC--c
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT------------WENWKLIG------------GDTLLGITTTQEN--E  129 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~------------~~~~~~~~------------~~p~~gl~~d~~g--~  129 (373)
                      ...++++.++|.+. +|+.+|.|..++ .+++            ...+....            +... .+++.+++  .
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-~l~~~~~~~~~  108 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-KIRWLPQKNAA  108 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-EEEECCCCSSS
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-EEEEcCCCCcc
Confidence            35678899988766 677899999998 3332            12222211            3345 88999887  4


Q ss_pred             -EEEEECCCcEEEEe-cCC-cEEE-e-----------------------------------eccCCccccccceeEEcCC
Q 017317          130 -ILVCDADKGLLKVT-EEG-VTVL-A-----------------------------------SHVNGSRINLADDLIAATD  170 (373)
Q Consensus       130 -L~va~~~~gl~~~~-~~g-~~~l-~-----------------------------------~~~~~~~~~~~~~l~~~~d  170 (373)
                       |..+...+.+..++ .++ .... .                                   ..........+.++++.++
T Consensus       109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  188 (447)
T 3dw8_B          109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD  188 (447)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred             eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence             44555545566565 332 1100 0                                   0000111235678999999


Q ss_pred             CcEEEEeCCccccccccccccccccCCceEEEEeCCC-CeEEEee--------cCCCCcceEEEccCC-CEEEEEeCCCC
Q 017317          171 GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-NETSILL--------DSLFFANGVALSKDE-DYLVVCETFKF  240 (373)
Q Consensus       171 G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-~~~~~~~--------~~~~~~~gi~~~~dg-~~l~v~~~~~~  240 (373)
                      |.++++. .                 .+.|..+|..+ ++.....        ........++++|++ + ++++...++
T Consensus       189 ~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg  249 (447)
T 3dw8_B          189 YETYLSA-D-----------------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKG  249 (447)
T ss_dssp             SSEEEEE-C-----------------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTS
T ss_pred             CCEEEEe-C-----------------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCC
Confidence            9877764 2                 37788888763 2222211        112235679999998 6 555555677


Q ss_pred             eEEEEEecCCCCc--ceeEEecCCC-----------CCCCceeECCCCCEEEEEec
Q 017317          241 RCLKYWLKGESKE--QTEIFVENLP-----------GGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       241 ~i~~~~~~~~~~~--~~~~~~~~~~-----------g~p~~i~~d~dG~lwva~~~  283 (373)
                      .|..|++......  ....+.....           +....++++++|++.++...
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            8999997654321  1222321111           13456888999987776544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.27  E-value=0.0015  Score=58.15  Aligned_cols=231  Identities=10%  Similarity=-0.036  Sum_probs=128.6

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCCcEEEeec
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEGVTVLASH  153 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g~~~l~~~  153 (373)
                      -.++++.++|++. +++.++.|..++ .+++. ..+........ .+++.+++.+++ +...+.+..++ .++..... .
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-~  135 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-T  135 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-E
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-h
Confidence            3567777877655 778899999999 45543 33333344556 899999997655 45445567777 54411111 1


Q ss_pred             cCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecC-CCCcceEEEcc--C
Q 017317          154 VNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS-LFFANGVALSK--D  228 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~-~~~~~gi~~~~--d  228 (373)
                      ..+ ....+..+++.| ++.+.++.+.                 .+.|..+|..++... .+... ....+.+.+++  +
T Consensus       136 ~~~-h~~~v~~v~~~p~~~~~l~sgs~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (304)
T 2ynn_A          136 FEG-HEHFVMCVAFNPKDPSTFASGCL-----------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD  197 (304)
T ss_dssp             ECC-CCSCEEEEEECTTCTTEEEEEET-----------------TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT
T ss_pred             hcc-cCCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC
Confidence            111 123577899998 5676666432                 467878886544322 12222 12234566665  6


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      ++ ++++...++.|..+++....  ....+. .-......+++.+++.+.++....                        
T Consensus       198 ~~-~l~s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~D------------------------  249 (304)
T 2ynn_A          198 KP-YMITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSED------------------------  249 (304)
T ss_dssp             CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEETT------------------------
T ss_pred             CC-EEEEEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcCC------------------------
Confidence            66 45555567788888865431  112222 111233456788898866654432                        


Q ss_pred             hhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCC
Q 017317          309 IKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                                +.+..+| ..++....+....    ..+..+... + +..|+.+-..+.+..+.+.
T Consensus       250 ----------g~i~iWd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~  301 (304)
T 2ynn_A          250 ----------GTLKIWNSSTYKVEKTLNVGL----ERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (304)
T ss_dssp             ----------SCEEEEETTTCCEEEEECCSS----SSEEEEEECTTCGGGCEEEEETTEEEEEECC
T ss_pred             ----------CeEEEEECCCCceeeeccCCC----ccEEEEEECCCCCceEEEEecCCceEEEEec
Confidence                      1355566 3567777765433    234555543 2 3333434346667776665

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.26  E-value=6.9e-05  Score=69.82  Aligned_cols=181  Identities=13%  Similarity=0.129  Sum_probs=106.4

Q ss_pred             CcceEEEec--CCCEEEEecCC----eEEEEEcCC-ceEEeeeec--------------CccccCeEECC---CCcEEEE
Q 017317           78 GPEDVCVDR--NGVLYTATRDG----WIKRLHKNG-TWENWKLIG--------------GDTLLGITTTQ---ENEILVC  133 (373)
Q Consensus        78 ~P~~ia~d~--~G~l~v~~~~g----~I~~~~~~g-~~~~~~~~~--------------~~p~~gl~~d~---~g~L~va  133 (373)
                      ...+|++|+  .+.||+++..|    +|++.+..| .++.+....              .... +|++++   .+.||++
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEEE
Confidence            357899998  89999998777    888876444 344433210              1233 577874   6789998


Q ss_pred             ECCCcEEEEecCC--cEEEeecc--C------------CccccccceeEEcC--CCcEEEEeCCcccccccccccccccc
Q 017317          134 DADKGLLKVTEEG--VTVLASHV--N------------GSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAK  195 (373)
Q Consensus       134 ~~~~gl~~~~~~g--~~~l~~~~--~------------~~~~~~~~~l~~~~--dG~l~v~~~~~~~~~~~~~~~~~~~~  195 (373)
                      ....+|++.+..|  .+.+....  +            +.....+..|++++  .+.||++...                
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~----------------  198 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS----------------  198 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC----------------
Confidence            7667888887545  45442210  0            11122356788987  3689998643                


Q ss_pred             CCceEEEEeCCCCeEEEeecCC-------------CCcceEEEccC-CCEEEEEeCCCCeEEEEEecCCCCcceeEEecC
Q 017317          196 PHGKLLKYDPSLNETSILLDSL-------------FFANGVALSKD-EDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN  261 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~~~~~~-------------~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  261 (373)
                        ++|++.+..++..+.+....             .....++++++ .+.+|+..  ...|++.+-.+.   +.+.+...
T Consensus       199 --ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D~G~---tW~~~~~~  271 (394)
T 3b7f_A          199 --GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDRREG---VWKRIGDA  271 (394)
T ss_dssp             --BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEETTTT---EEECGGGG
T ss_pred             --CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCCCCC---cceECCCC
Confidence              57888876655565543221             11345778875 35688875  356888763332   12222111


Q ss_pred             CCC----CCCceeEC--CCCCEEEEEe
Q 017317          262 LPG----GPDNIKLA--PDGSFWIAIL  282 (373)
Q Consensus       262 ~~g----~p~~i~~d--~dG~lwva~~  282 (373)
                      ++.    +...+++|  ..+.+|+++.
T Consensus       272 l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          272 MPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             SCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCCCccceEEEEECCCCCCEEEEEec
Confidence            221    11236666  4578999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.25  E-value=0.00015  Score=72.04  Aligned_cols=178  Identities=11%  Similarity=-0.020  Sum_probs=99.9

Q ss_pred             cCCC--EEEEe-cCCeEEEEEcC----CceEEeeee-----cCccccCeEECCCCc-EEEEECC----------CcEEEE
Q 017317           86 RNGV--LYTAT-RDGWIKRLHKN----GTWENWKLI-----GGDTLLGITTTQENE-ILVCDAD----------KGLLKV  142 (373)
Q Consensus        86 ~~G~--l~v~~-~~g~I~~~~~~----g~~~~~~~~-----~~~p~~gl~~d~~g~-L~va~~~----------~gl~~~  142 (373)
                      |||+  |++.. .+..|+.++.+    ++...+...     ..... ++++++||+ |+.+...          ..|+.+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            6665  34443 46789998865    555544331     23445 788999996 4444322          257778


Q ss_pred             e-cC------C-cEEEe-eccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCC-CC---
Q 017317          143 T-EE------G-VTVLA-SHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LN---  208 (373)
Q Consensus       143 ~-~~------g-~~~l~-~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~---  208 (373)
                      + .+      + .+.+. ..     ......++++|||+ |+++..... +         ..-....|+.+|.+ ++   
T Consensus       167 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~SpDG~~la~~~~~~~-~---------~~~~~~~i~~~d~~~~g~~~  231 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSDDA-----HRFVTGPRLSPDGRQAVWLAWDHP-R---------MPWEGTELKTARVTEDGRFA  231 (662)
T ss_dssp             ETTSTTTTCGGGSEESSCSC-----SSEECCCEECTTSSEEEEEEECTT-C---------CTTTCEEEEEEEECTTSCEE
T ss_pred             ECCCCccccCCceeEEEecC-----CCcccCceECCCCCEEEEEECCCC-C---------CCCCCcEEEEEEECCCCccc
Confidence            8 55      6 55443 21     12455778999995 555542200 0         00012478989887 46   


Q ss_pred             eEEEeecC-CCCcceEEEccCCCEEEEEeCCCC--eEEEEEecCCCCcceeEEecCCC------CC--CCceeECCCCCE
Q 017317          209 ETSILLDS-LFFANGVALSKDEDYLVVCETFKF--RCLKYWLKGESKEQTEIFVENLP------GG--PDNIKLAPDGSF  277 (373)
Q Consensus       209 ~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~------g~--p~~i~~d~dG~l  277 (373)
                      +.+.+... ......++|+|||+ ++++....+  .|++++.++.+.   ........      ..  ...+++.++|++
T Consensus       232 ~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~  307 (662)
T 3azo_A          232 DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAA---TQLCRREEEFAGPLWTPGMRWFAPLANGLI  307 (662)
T ss_dssp             EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCE---EESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred             ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCce---eecccccccccCccccccCceEeEeCCCEE
Confidence            44444443 34567789999999 666554444  788887643321   11111100      01  235677778887


Q ss_pred             EEEEec
Q 017317          278 WIAILQ  283 (373)
Q Consensus       278 wva~~~  283 (373)
                      ++....
T Consensus       308 ~~~~~~  313 (662)
T 3azo_A          308 AVVHGK  313 (662)
T ss_dssp             EEEEBS
T ss_pred             EEEEEc
Confidence            766543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.23  E-value=0.0025  Score=58.41  Aligned_cols=150  Identities=10%  Similarity=-0.025  Sum_probs=89.5

Q ss_pred             CCcceEEEec-CCC-EEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECC---CCc-EEEEECCCcEEEEe-cCC--
Q 017317           77 NGPEDVCVDR-NGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ---ENE-ILVCDADKGLLKVT-EEG--  146 (373)
Q Consensus        77 ~~P~~ia~d~-~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~---~g~-L~va~~~~gl~~~~-~~g--  146 (373)
                      ....++++.+ ++. +.+++.+|.|..++ ..++............ .+.+.+   ++. ++++...+.+..++ .++  
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            3456788887 554 55777899999999 4444433333334444 666665   333 44555555677787 555  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEee---------
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILL---------  214 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~---------  214 (373)
                      ...+..     ....+..+++.++|. ++++.+.                 .|.|..+|..++.  ...+.         
T Consensus       179 ~~~~~~-----~~~~v~~~~~~~~~~~ll~~~~~-----------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          179 SHILQG-----HRQEILAVSWSPRYDYILATASA-----------------DSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             CEEECC-----CCSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             eeeecC-----CCCcEEEEEECCCCCcEEEEEcC-----------------CCcEEEEECCCCCccccccccccccccee
Confidence            333321     113467899999986 5555332                 3677778765443  11110         


Q ss_pred             ------cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          215 ------DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       215 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                            ........++++++++.++.+. .++.|..|++...
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~  277 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNG  277 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTC
T ss_pred             eccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCC
Confidence                  1112245789999999666654 4567889987643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.22  E-value=0.0019  Score=63.64  Aligned_cols=179  Identities=13%  Similarity=0.131  Sum_probs=106.1

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEc-CCce--E-EeeeecCccccCeEECCCCcEEEEECCC----c-EEEEecCC
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW--E-NWKLIGGDTLLGITTTQENEILVCDADK----G-LLKVTEEG  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~--~-~~~~~~~~p~~gl~~d~~g~L~va~~~~----g-l~~~~~~g  146 (373)
                      ..-.++++.|+|.+. .++.+|.|..++. +++.  . .+....+... .++++++|+..++....    + +..++ .+
T Consensus        60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~-~v~fs~dg~~l~~~~~~~~~~~~v~~wd-~~  137 (611)
T 1nr0_A           60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFD-TG  137 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETT-TC
T ss_pred             CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE-EEEECCCCCEEEEEECCCCceeEEEEee-CC
Confidence            345678999999876 6778999999984 3322  1 2222234456 89999999866543221    2 33333 33


Q ss_pred             --cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcce
Q 017317          147 --VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANG  222 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~g  222 (373)
                        ...+    .+ ....++.+++.|++. ..++.+                 ..+.|..+|..+++......+ ......
T Consensus       138 ~~~~~l----~g-h~~~v~~v~f~p~~~~~l~s~s-----------------~D~~v~lwd~~~~~~~~~l~~H~~~V~~  195 (611)
T 1nr0_A          138 TSNGNL----TG-QARAMNSVDFKPSRPFRIISGS-----------------DDNTVAIFEGPPFKFKSTFGEHTKFVHS  195 (611)
T ss_dssp             CBCBCC----CC-CSSCEEEEEECSSSSCEEEEEE-----------------TTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             CCccee----cC-CCCCceEEEECCCCCeEEEEEe-----------------CCCeEEEEECCCCeEeeeeccccCceEE
Confidence              2211    11 123578899999986 344433                 246777788766654433333 234578


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec------CCCCCCCceeECCCCCEEEEEe
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE------NLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++|+|||+ ++++...++.|..++....+.  ...+..      .-.+....++++++|++.++..
T Consensus       196 v~fspdg~-~las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s  258 (611)
T 1nr0_A          196 VRYNPDGS-LFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  258 (611)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCC-EEEEEECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence            99999998 555555677788888643221  111111      1122345678899998766554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00088  Score=64.79  Aligned_cols=182  Identities=12%  Similarity=0.010  Sum_probs=101.3

Q ss_pred             CCcceEEEecCCCEEEEe-cCCeE------------------EEEEcCCceEEee------------eecCccccCeEEC
Q 017317           77 NGPEDVCVDRNGVLYTAT-RDGWI------------------KRLHKNGTWENWK------------LIGGDTLLGITTT  125 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~-~~g~I------------------~~~~~~g~~~~~~------------~~~~~p~~gl~~d  125 (373)
                      .+-.++++.|||.+++.. .++.|                  +.+.++|....+.            ....... ++++.
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~-~vawS   94 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR-VCKPS   94 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE-EEEEC
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE-EEEEC
Confidence            346789999999999654 55655                  2333444211110            0012245 88899


Q ss_pred             CCCcEE-EEECCCcEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEE
Q 017317          126 QENEIL-VCDADKGLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (373)
Q Consensus       126 ~~g~L~-va~~~~gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~  203 (373)
                      ++|... +++..+.+..++.++ ...+. .........+.++++.|||++.++.+                 ..|.|..+
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-----------------~DGtVkIW  156 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-----------------EDGELQFF  156 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE-----------------TTSEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEc-----------------CCCEEEEE
Confidence            999755 455555566666444 33332 11111123577999999996544432                 24788888


Q ss_pred             eCCCCeE--------EEeecC----CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcc-eeEEecCCCCCCCcee
Q 017317          204 DPSLNET--------SILLDS----LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENLPGGPDNIK  270 (373)
Q Consensus       204 d~~~~~~--------~~~~~~----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~g~p~~i~  270 (373)
                      |..++..        ..+...    ......++|+|||  + ++...++.++.+++++..... ...+...-......++
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            8776642        332111    2345789999998  4 444457788888887654321 1122111113456677


Q ss_pred             ECCCCCEEEEEe
Q 017317          271 LAPDGSFWIAIL  282 (373)
Q Consensus       271 ~d~dG~lwva~~  282 (373)
                      +.  |+..+++.
T Consensus       234 Fs--g~~LASa~  243 (588)
T 2j04_A          234 IV--DYKVVLTC  243 (588)
T ss_dssp             EE--TTEEEEEC
T ss_pred             EE--CCEEEEEe
Confidence            75  55555543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.18  E-value=0.0037  Score=56.97  Aligned_cols=183  Identities=8%  Similarity=0.009  Sum_probs=109.0

Q ss_pred             cCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEEECCCcE-EEEe-cCC-
Q 017317           73 EGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDADKGL-LKVT-EEG-  146 (373)
Q Consensus        73 ~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~~gl-~~~~-~~g-  146 (373)
                      .|.-..-.++++.++|... +++.+|.|..++ ..++.. .+........ .+++.++|.++++....+. ..++ ..+ 
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM-ACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC-EEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE-EEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            3444556789999988755 677899999998 444433 2222334456 8899999987776544443 3343 211 


Q ss_pred             -------cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CC
Q 017317          147 -------VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LF  218 (373)
Q Consensus       147 -------~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~  218 (373)
                             ...+..     ....+..+.+.+++...++.+.                 .+.|..+|..+++......+ ..
T Consensus       140 ~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~s~-----------------D~~v~lwd~~~~~~~~~~~~h~~  197 (354)
T 2pbi_B          140 NENMAAKKKSVAM-----HTNYLSACSFTNSDMQILTASG-----------------DGTCALWDVESGQLLQSFHGHGA  197 (354)
T ss_dssp             TCCSGGGCEEEEE-----CSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSS
T ss_pred             cccccccceeeec-----cCCcEEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCCeEEEEEcCCCC
Confidence                   111111     1234678889999876555432                 47888889887765443332 22


Q ss_pred             CcceEEEcc--CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          219 FANGVALSK--DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       219 ~~~gi~~~~--dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ....+++++  +++ ++++...++.|..|++...+.  ...+. .-......+++.++|++.++..
T Consensus       198 ~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~~~p~~~~l~s~s  259 (354)
T 2pbi_B          198 DVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQC--VQAFE-THESDVNSVRYYPSGDAFASGS  259 (354)
T ss_dssp             CEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCcE--EEEec-CCCCCeEEEEEeCCCCEEEEEe
Confidence            335667766  466 455555667899998754321  12221 1223355678889998666544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.18  E-value=0.00011  Score=67.64  Aligned_cols=151  Identities=16%  Similarity=0.164  Sum_probs=94.5

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEEee--eecC-ccccCeEECCCCcEEEE-ECCC--c--EEEEe-cCC-c
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWK--LIGG-DTLLGITTTQENEILVC-DADK--G--LLKVT-EEG-V  147 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~--~~~~-~p~~gl~~d~~g~L~va-~~~~--g--l~~~~-~~g-~  147 (373)
                      ..++++.|+|.+.+...++.+.+++ .+++.....  .... ... .+++.++|..+++ ....  +  +..++ ..+ .
T Consensus       179 V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~  257 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLS-KINFIADDTVLIAASLKKGKGIVLTKISIKSGNT  257 (365)
T ss_dssp             CCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEE-EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred             eEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEE-EEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence            5679999999988666667787777 555433221  1112 234 7889999976654 3222  2  34444 344 2


Q ss_pred             EEEee-ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCC-CCcceEE
Q 017317          148 TVLAS-HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSL-FFANGVA  224 (373)
Q Consensus       148 ~~l~~-~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~-~~~~gi~  224 (373)
                      ..... ...+ ....+.++++.|||++.++.+.                 .+.|..+|..+++... +..+. .....++
T Consensus       258 ~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~-----------------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~  319 (365)
T 4h5i_A          258 SVLRSKQVTN-RFKGITSMDVDMKGELAVLASN-----------------DNSIALVKLKDLSMSKIFKQAHSFAITEVT  319 (365)
T ss_dssp             EEEEEEEEES-SCSCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEEETTSSSSCEEEEE
T ss_pred             cceeeeeecC-CCCCeEeEEECCCCCceEEEcC-----------------CCEEEEEECCCCcEEEEecCcccCCEEEEE
Confidence            22211 1111 1235788999999987766432                 4678889988777543 33332 3357899


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecC
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      |+|||+ ++++.+.++.|..+++..
T Consensus       320 fSpdg~-~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          320 ISPDST-YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ECTTSC-EEEEEETTSEEEEEECCT
T ss_pred             ECCCCC-EEEEEeCCCeEEEEEcCC
Confidence            999999 566666788888888753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.15  E-value=5.2e-05  Score=74.29  Aligned_cols=170  Identities=14%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             cceEEEecCC--CEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEE-ECC----CcEEEEe-cCC-cE
Q 017317           79 PEDVCVDRNG--VLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVC-DAD----KGLLKVT-EEG-VT  148 (373)
Q Consensus        79 P~~ia~d~~G--~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~----~gl~~~~-~~g-~~  148 (373)
                      ....++.++|  .+|+....+.+..++ .+|+.+.+.....  . .+++++||+.++. ...    ..|+.++ .+| .+
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            3344555554  466655556666777 4565555544333  5 8889999986653 221    3478888 667 66


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEE---
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVA---  224 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~---  224 (373)
                      .+... .    .....+++.|||+..++...               .....|+++|.++++.+ ..... .....++   
T Consensus       189 ~l~~~-~----~~~~~~~~SpDG~~l~~~~~---------------~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          189 VFDSG-E----GSFSSASISPGMKVTAGLET---------------AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             EECCS-S----CEEEEEEECTTSCEEEEEEC---------------SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             EeecC-C----CccccceECCCCCEEEEccC---------------CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence            55322 1    23478899999975443211               11237999999988877 43332 2234455   


Q ss_pred             -----EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          225 -----LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       225 -----~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                           |+||| .++++...++.+..|.+ |.    ...   ...+....++++ +|++++...
T Consensus       248 ~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~----~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          248 ITWLGYLPDG-RLAVVARREGRSAVFID-GE----RVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             EEEEEECTTS-CEEEEEEETTEEEEEET-TE----EEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             ccceeEcCCC-cEEEEEEcCCcEEEEEE-CC----eec---cCCCceEEEEec-CCEEEEEEc
Confidence                 99999 47777766777777876 32    111   112334457777 887665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.15  E-value=0.00035  Score=69.40  Aligned_cols=197  Identities=14%  Similarity=0.029  Sum_probs=106.1

Q ss_pred             CcceEEEecCCCEEEEe---cCCe--EEEEEcCCceEEeeeecCcccc---------CeEEC--CCCcE--EEEEC-CCc
Q 017317           78 GPEDVCVDRNGVLYTAT---RDGW--IKRLHKNGTWENWKLIGGDTLL---------GITTT--QENEI--LVCDA-DKG  138 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~---~~g~--I~~~~~~g~~~~~~~~~~~p~~---------gl~~d--~~g~L--~va~~-~~g  138 (373)
                      ...++++++++..|+..   .++.  |+....+|+.+.+.... ....         ..++.  +||+.  +++.. ...
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~  103 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR  103 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence            34566777666666544   2333  34433445444432211 1110         23233  77854  44432 346


Q ss_pred             EEEEe-c--C-C-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC-----
Q 017317          139 LLKVT-E--E-G-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL-----  207 (373)
Q Consensus       139 l~~~~-~--~-g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~-----  207 (373)
                      |+.++ .  . + .+.+.............+++++|||+ |+++.....        ..........|+++|.++     
T Consensus       104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A          104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT--------GEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC--------SSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc--------CCCCCCceeEEEEEECCCCcccc
Confidence            88888 4  3 6 55553311100112456789999996 555432100        000001225799999987     


Q ss_pred             -CeEEEee-cCCCCcceEEEccCCCEEEEEeCCC-------CeEEEEEecC-CCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          208 -NETSILL-DSLFFANGVALSKDEDYLVVCETFK-------FRCLKYWLKG-ESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       208 -~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~-------~~i~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                       ++.+.+. ........++++|||+.|+++....       ..|+.+++++ ........+..........++.++||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             6666665 4445567789999999888776432       4789999873 3222333333222234556778899997


Q ss_pred             EEEEec
Q 017317          278 WIAILQ  283 (373)
Q Consensus       278 wva~~~  283 (373)
                      ++....
T Consensus       256 ~~~~~~  261 (662)
T 3azo_A          256 IVATDR  261 (662)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            766543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.14  E-value=0.00069  Score=67.93  Aligned_cols=199  Identities=7%  Similarity=-0.039  Sum_probs=103.9

Q ss_pred             CcceEEEecCCCEE-EEec---------CCeEEEEE-cCCceEEeeeecC---ccccCeEECCCCcEEEEECCCcEEEEe
Q 017317           78 GPEDVCVDRNGVLY-TATR---------DGWIKRLH-KNGTWENWKLIGG---DTLLGITTTQENEILVCDADKGLLKVT  143 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~---------~g~I~~~~-~~g~~~~~~~~~~---~p~~gl~~d~~g~L~va~~~~gl~~~~  143 (373)
                      ...++++.|||+.. ++..         .+.|+.++ .+|+.+.+....+   ... .+++.+||+..+......|+.++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEECCeEEEEE
Confidence            36789999999854 4443         26788888 4455443332222   245 78899999644332335688888


Q ss_pred             -cCC-cEEEeec-cCCc-------------cccccceeEEcCCCc-EEEEeCCccccccccc------------cc----
Q 017317          144 -EEG-VTVLASH-VNGS-------------RINLADDLIAATDGS-IYFSVASTKFGLHNWG------------LD----  190 (373)
Q Consensus       144 -~~g-~~~l~~~-~~~~-------------~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~------------~~----  190 (373)
                       .+| ...+... ..+.             -+....++++.|||+ |.++.... -....+.            ..    
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-CccceEEeeccCCcCCCcceeccCC
Confidence             566 4444322 1110             011236789999996 54443210 0000000            00    


Q ss_pred             -cccccCCceEEEEeCCCCeE-EEeecC------CCCcceEEEccCCCEEEEE-eCC--CCeEEEEEecCCCCcceeEEe
Q 017317          191 -LLEAKPHGKLLKYDPSLNET-SILLDS------LFFANGVALSKDEDYLVVC-ETF--KFRCLKYWLKGESKEQTEIFV  259 (373)
Q Consensus       191 -~~~~~~~g~l~~~d~~~~~~-~~~~~~------~~~~~gi~~~~dg~~l~v~-~~~--~~~i~~~~~~~~~~~~~~~~~  259 (373)
                       .........|+.+|..+++. ..+...      ......++|+|||+.++.. +..  ...|+.+++.+.+...  ...
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~--~~~  297 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK--KHE  297 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE--EEE
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE--EEE
Confidence             00001123788999887763 333221      1223468999999866444 322  2357777765543221  111


Q ss_pred             cCCCCC----CCceeECCCCC-EEEE
Q 017317          260 ENLPGG----PDNIKLAPDGS-FWIA  280 (373)
Q Consensus       260 ~~~~g~----p~~i~~d~dG~-lwva  280 (373)
                      ....+.    +..+++++||+ |+++
T Consensus       298 ~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          298 DESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eccCCEEeccCCCceEcCCCCeEEEE
Confidence            111122    24678899997 5443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.14  E-value=0.00086  Score=67.14  Aligned_cols=180  Identities=11%  Similarity=0.049  Sum_probs=106.8

Q ss_pred             CCcceEEEecC-CCEE-EEecCCeEEEEEcC-C-c----e-EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cC
Q 017317           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLHKN-G-T----W-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EE  145 (373)
Q Consensus        77 ~~P~~ia~d~~-G~l~-v~~~~g~I~~~~~~-g-~----~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~  145 (373)
                      ..-.+|++.++ +.++ +++.++.|..++.+ + .    . ..+........ .+++.++|++.++ ...+.|..++ .+
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd~~~  461 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWDLAA  461 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            34566777764 3444 77889999998832 1 1    1 12222233455 8899999986654 4444566677 56


Q ss_pred             C--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC----CCC
Q 017317          146 G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS----LFF  219 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~----~~~  219 (373)
                      +  ...+..+     ...+.++++.++|+..++.+.                 .+.|..+|..+.....+...    ...
T Consensus       462 ~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~-----------------D~~i~iwd~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          462 GVSTRRFVGH-----TKDVLSVAFSLDNRQIVSASR-----------------DRTIKLWNTLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             TEEEEEEECC-----SSCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred             CcceeEEeCC-----CCCEEEEEEeCCCCEEEEEeC-----------------CCEEEEEECCCCcceeeccCCCCCCCc
Confidence            6  3333211     124678999999976666442                 36777777654433333221    122


Q ss_pred             cceEEEccCCC-EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          220 ANGVALSKDED-YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       220 ~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ...+++++++. .++++...++.|..+++...+.  ...+. ...+....++++++|++.++..
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~-~h~~~v~~v~~spdg~~l~sg~  580 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLA-GHTGYVSTVAVSPDGSLCASGG  580 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEc-CCCCCEEEEEEeCCCCEEEEEe
Confidence            46788999863 3566666677888888764321  11221 2223456688999998766654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.13  E-value=0.00079  Score=60.03  Aligned_cols=181  Identities=18%  Similarity=0.133  Sum_probs=97.2

Q ss_pred             cCCcCCcceEEEecCCCEE-EEecCCeEEEEEcC-Cc--eEE---eeeecCccccCeEECC--CCcEEE-EECCCcEEEE
Q 017317           73 EGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKN-GT--WEN---WKLIGGDTLLGITTTQ--ENEILV-CDADKGLLKV  142 (373)
Q Consensus        73 ~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~-g~--~~~---~~~~~~~p~~gl~~d~--~g~L~v-a~~~~gl~~~  142 (373)
                      .|.-....++++.++|.+. +++.+|.|..++.. +.  .+.   +........ .+++.+  ++++++ +...+.+..+
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            3434556788999988755 67789999999832 21  122   222234455 889987  476554 5554556666


Q ss_pred             e-cCC-c-------EEEeeccCCccccccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          143 T-EEG-V-------TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       143 ~-~~g-~-------~~l~~~~~~~~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                      + ..+ .       +.+.. ..+ ....+.++++.++  |.+.++.+.                 .+.|..+|..+++..
T Consensus        87 d~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~l~~~~~-----------------dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCT-LND-SKGSLYSVKFAPAHLGLKLACLGN-----------------DGILRLYDALEPSDL  147 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEE-ECC-CSSCEEEEEECCGGGCSEEEEEET-----------------TCEEEEEECSSTTCT
T ss_pred             ecCCCcccccccCcceeee-ecc-cCCceeEEEEcCCCCCcEEEEecC-----------------CCcEEEecCCChHHh
Confidence            6 443 1       22222 111 1235778999998  876655432                 467888886654311


Q ss_pred             E------ee--------cCCCCcceEEEccC---CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317          212 I------LL--------DSLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (373)
Q Consensus       212 ~------~~--------~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d  274 (373)
                      .      ..        ........++++|+   ++.++++. .++.+..++...........+. ...+....+++.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPS  225 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCC
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCC
Confidence            0      00        11223457889887   77555554 3444433332222111111111 11233456778888


Q ss_pred             C
Q 017317          275 G  275 (373)
Q Consensus       275 G  275 (373)
                      |
T Consensus       226 ~  226 (351)
T 3f3f_A          226 I  226 (351)
T ss_dssp             S
T ss_pred             C
Confidence            7

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.12  E-value=0.0023  Score=62.63  Aligned_cols=41  Identities=20%  Similarity=0.409  Sum_probs=27.2

Q ss_pred             EEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCC
Q 017317          320 AVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNT  362 (373)
Q Consensus       320 ~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~  362 (373)
                      .+..+| .+|+.+..+....+.. ..+. +...+|++|++...+
T Consensus       486 ~l~a~D~~tG~~lw~~~~~~~~~-~~p~-~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          486 YLKALDNKDGKELWNFKMPSGGI-GSPM-TYSFKGKQYIGSMYG  527 (571)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEEEEEC
T ss_pred             eEEEEECCCCCEEEEEeCCCCcE-eeeE-EEEECCEEEEEEECC
Confidence            578888 5799998887665431 2122 223689999988654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.11  E-value=0.00046  Score=69.75  Aligned_cols=169  Identities=8%  Similarity=-0.035  Sum_probs=88.3

Q ss_pred             eEEEecCCCEE-EEecC---------CeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-c
Q 017317           81 DVCVDRNGVLY-TATRD---------GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-V  147 (373)
Q Consensus        81 ~ia~d~~G~l~-v~~~~---------g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~  147 (373)
                      ++++.|||+.. +++.+         +.++.++ .+|+.+.+....+... ..++.|||+..+......|+.++ .+| .
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEEECCeEEEEECCCCce
Confidence            37788988743 44432         5677888 4555444333334455 77899999633332345688888 556 5


Q ss_pred             EEEeec-cCCcc-------------ccccceeEEcCCCc-EEEEeCCcccccccccc-------------------cccc
Q 017317          148 TVLASH-VNGSR-------------INLADDLIAATDGS-IYFSVASTKFGLHNWGL-------------------DLLE  193 (373)
Q Consensus       148 ~~l~~~-~~~~~-------------~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~-------------------~~~~  193 (373)
                      ..+... ..+..             +....++++.|||+ |.++.... -....+..                   ...+
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~-~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND-TEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC-TTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc-cCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            444321 11100             12234588999996 54442110 00000000                   0001


Q ss_pred             ccCCceEEEEeCCC---C---eEEEeec------CCCCcceEEEccCCCEEEE-EeCCC--CeEEEEEecCCC
Q 017317          194 AKPHGKLLKYDPSL---N---ETSILLD------SLFFANGVALSKDEDYLVV-CETFK--FRCLKYWLKGES  251 (373)
Q Consensus       194 ~~~~g~l~~~d~~~---~---~~~~~~~------~~~~~~gi~~~~dg~~l~v-~~~~~--~~i~~~~~~~~~  251 (373)
                      ......|+.+|.++   +   +...+..      .......++|+|||+.++. .....  ..|+.+++++.+
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            12233688899887   6   4444432      1222346789999984333 33322  257788876543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.11  E-value=0.0019  Score=58.29  Aligned_cols=158  Identities=9%  Similarity=0.058  Sum_probs=98.2

Q ss_pred             eeEeccCCcCCcceEEEecC---C--CEEEEecCCeEEEEE-cCCc-eEEeeee-----cCccccCeEECCC----CcE-
Q 017317           68 VTRLGEGILNGPEDVCVDRN---G--VLYTATRDGWIKRLH-KNGT-WENWKLI-----GGDTLLGITTTQE----NEI-  130 (373)
Q Consensus        68 ~~~~~~g~~~~P~~ia~d~~---G--~l~v~~~~g~I~~~~-~~g~-~~~~~~~-----~~~p~~gl~~d~~----g~L-  130 (373)
                      ...+.++.-....++++.|+   +  .++++..++.|..++ .+++ ...+...     ..... .+++.++    |.+ 
T Consensus        10 ~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           10 VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEE
T ss_pred             EEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEE
Confidence            33455554455678888862   3  366777788898888 3333 2222211     13345 7888777    544 


Q ss_pred             EEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCC
Q 017317          131 LVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS  206 (373)
Q Consensus       131 ~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  206 (373)
                      +++...+.|..++ .++  ...+..     ....+.++++.+ ++.+.++.+.                 .+.|..+|..
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~  146 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVG-----HGNAINELKFHPRDPNLLLSVSK-----------------DHALRLWNIQ  146 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEES-----CCSCEEEEEECSSCTTEEEEEET-----------------TSCEEEEETT
T ss_pred             EEecCCCEEEEEEchhceEeeeecC-----CCCcEEEEEECCCCCCEEEEEeC-----------------CCeEEEEEee
Confidence            4455544566677 555  333321     123578899999 8877666432                 4788889988


Q ss_pred             CCeEEEee----cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          207 LNETSILL----DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       207 ~~~~~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +++.....    ........++++++++.++.+. .++.|..|++..
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINS  192 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCS
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCC
Confidence            77655544    2233457899999999665554 466888888753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.11  E-value=0.00023  Score=65.39  Aligned_cols=187  Identities=14%  Similarity=0.086  Sum_probs=97.2

Q ss_pred             cceEEEecCCCE-E-EEec--CCeEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEE
Q 017317           79 PEDVCVDRNGVL-Y-TATR--DGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        79 P~~ia~d~~G~l-~-v~~~--~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l  150 (373)
                      +.++++.++|+. . +...  ...|+.++. .++...+.........++.+.+||+ |+.+.....++.++ .++ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            455677788864 3 3333  246888884 4444444332333331478899996 54554445688888 556 5444


Q ss_pred             eeccCCccccccceeE----------------EcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317          151 ASHVNGSRINLADDLI----------------AATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~----------------~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  213 (373)
                      .....+. ...-..|+                +.|+|+ +.+..             .........|+.+|.++++.+.+
T Consensus       118 ~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~-------------~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          118 YTVDEEW-KGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE-------------FYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             EECCTTE-EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH-------------HHHTCCCEEEEEEETTTCCEEEE
T ss_pred             Eeccccc-CCCCCEEEeccCCccccccccccccCCCCcceeeee-------------eccCCCcceEEEEECCCCcEEee
Confidence            3311110 00000111                112221 00000             00012346799999988877766


Q ss_pred             ecCCCCcceEEEcc-CCCEEEEEeCCC-----CeEEEEEecCCCCcceeEEecCC-CCCCCceeECCCCC-EEEEEe
Q 017317          214 LDSLFFANGVALSK-DEDYLVVCETFK-----FRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       214 ~~~~~~~~gi~~~~-dg~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~dG~-lwva~~  282 (373)
                      .........+.++| |++.++++....     .+|+.++.++...   ....... ...+..+++++||+ |+++..
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCCccccceEECCCCCEEEEEec
Confidence            55444556789999 787666654332     4788888765432   1111111 11234467889996 555544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.0052  Score=55.48  Aligned_cols=142  Identities=12%  Similarity=0.071  Sum_probs=85.8

Q ss_pred             ccccCeEECC--CCcEEE-EECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccc
Q 017317          117 DTLLGITTTQ--ENEILV-CDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL  191 (373)
Q Consensus       117 ~p~~gl~~d~--~g~L~v-a~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~  191 (373)
                      ... .+++++  ++++++ +...+.+..++ .++ .......   .....+..+++.|+|.+.++.+.            
T Consensus       127 ~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~------------  190 (343)
T 3lrv_A          127 EII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSP------------  190 (343)
T ss_dssp             CEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECT------------
T ss_pred             CEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcC------------
Confidence            345 888988  888766 45555677777 666 3222111   11224778999999988776432            


Q ss_pred             ccccCCceEEEEeCCCCeEE--Eeec-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCC-cceeEEecCCCCCC-
Q 017317          192 LEAKPHGKLLKYDPSLNETS--ILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGP-  266 (373)
Q Consensus       192 ~~~~~~g~l~~~d~~~~~~~--~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p-  266 (373)
                           .+.|..+|..+++..  .+.. .......++|+|+++.|..+.  .+.|..|++..... .....+.  ....+ 
T Consensus       191 -----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~--~~~~~~  261 (343)
T 3lrv_A          191 -----DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYT--IPEFKT  261 (343)
T ss_dssp             -----TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCB--C-----
T ss_pred             -----CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccc--cccccc
Confidence                 478888888776543  3322 234457899999999777666  33888898764322 1111111  01122 


Q ss_pred             --CceeECCCCCEEEEEec
Q 017317          267 --DNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       267 --~~i~~d~dG~lwva~~~  283 (373)
                        ..++++++|++.++...
T Consensus       262 ~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          262 GTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             CCEEEEECTTSSEEEEEET
T ss_pred             cceEEEECCCCCEEEEecC
Confidence              23899999987776543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.10  E-value=0.00079  Score=70.83  Aligned_cols=142  Identities=15%  Similarity=0.113  Sum_probs=84.5

Q ss_pred             EEEecCCC-EEEEecCCeEE-EEEc-CCceEEeeeecCccccCeEECCCCcE-EEEECCCcEEEEe-cCC-cEEEeeccC
Q 017317           82 VCVDRNGV-LYTATRDGWIK-RLHK-NGTWENWKLIGGDTLLGITTTQENEI-LVCDADKGLLKVT-EEG-VTVLASHVN  155 (373)
Q Consensus        82 ia~d~~G~-l~v~~~~g~I~-~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g-~~~l~~~~~  155 (373)
                      +++. +|. |++.+.++.|+ .++. .++...+........ .+++++||+. +++.....++.++ .+| ...+.....
T Consensus       343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~  420 (1045)
T 1k32_A          343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  420 (1045)
T ss_dssp             ECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             eeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence            4444 443 34444456777 7774 344444432234456 8899999974 4555555688888 677 554432211


Q ss_pred             CccccccceeEEcCCCcEEEEeCCcc-ccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEE
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTK-FGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVV  234 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~-~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v  234 (373)
                          ..+..++++|||+..+...... +.        ......+.|+.+|.++++...+.........++|++||+.|++
T Consensus       421 ----~~v~~~~~SpDG~~la~~~~~~~~~--------~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          421 ----AMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             ----SCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             ----CCccceEECCCCCeEEEEecCcccc--------ccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence                2356889999997443322100 00        0001235799999988876655554455667899999998888


Q ss_pred             EeC
Q 017317          235 CET  237 (373)
Q Consensus       235 ~~~  237 (373)
                      ...
T Consensus       489 ~s~  491 (1045)
T 1k32_A          489 LSY  491 (1045)
T ss_dssp             EES
T ss_pred             Eec
Confidence            764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.09  E-value=0.0039  Score=61.01  Aligned_cols=63  Identities=11%  Similarity=0.124  Sum_probs=40.9

Q ss_pred             EEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC-----ccccCeEECCCCcEEEEEC------CCcEEEEe-cCC
Q 017317           82 VCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----DTLLGITTTQENEILVCDA------DKGLLKVT-EEG  146 (373)
Q Consensus        82 ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-----~p~~gl~~d~~g~L~va~~------~~gl~~~~-~~g  146 (373)
                      ++++ +|+||+++.++.|+.+| .+|+..-......     .......+. +|.+|++..      ...++.+| .+|
T Consensus       111 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          111 LAYG-AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             cEEE-CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCC
Confidence            4665 78999999999999999 5786543222221     111022332 678998865      34688899 678

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.06  E-value=0.0031  Score=63.30  Aligned_cols=187  Identities=10%  Similarity=0.082  Sum_probs=101.4

Q ss_pred             ceEEEecCCCEE-EEe-cCC----eEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCc-------------
Q 017317           80 EDVCVDRNGVLY-TAT-RDG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKG-------------  138 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~-~~g----~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~g-------------  138 (373)
                      .++++.|||+.. ++. .+|    .|+.++ .+|+............ ++++.+||+ |+++.....             
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~  206 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCC
Confidence            356788888754 333 333    788888 4555443222122245 799999996 665543333             


Q ss_pred             ---EEEEe-cCC-c--EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCC---
Q 017317          139 ---LLKVT-EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL---  207 (373)
Q Consensus       139 ---l~~~~-~~g-~--~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~---  207 (373)
                         |++++ .++ .  ..+..... . .....++.+++||+ |+++....             ......|+.+|.++   
T Consensus       207 ~~~v~~~~l~t~~~~~~~v~~~~~-~-~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          207 HQKLYYHVLGTDQSEDILCAEFPD-E-PKWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTT-C-TTCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSS
T ss_pred             CCEEEEEECCCCcccceEEeccCC-C-CeEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECccccc
Confidence               77777 444 2  23322211 1 12345788999996 55543210             01135788888765   


Q ss_pred             ---C--eEEEeecCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEecCCCCcceeEEecCCC-CCCCceeECCCCCEE
Q 017317          208 ---N--ETSILLDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDGSFW  278 (373)
Q Consensus       208 ---~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~dG~lw  278 (373)
                         +  ..+.+..... .....+++||+.+|+....   +.+|+++++++......+.+..... ....+++...++.++
T Consensus       272 ~~~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          272 GITGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             SSCSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             ccCCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence               3  3444433322 2233588999988887653   3479999876543222233332222 123345555566666


Q ss_pred             EEEec
Q 017317          279 IAILQ  283 (373)
Q Consensus       279 va~~~  283 (373)
                      +....
T Consensus       351 ~~~~~  355 (710)
T 2xdw_A          351 LCYLH  355 (710)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.05  E-value=0.0016  Score=60.84  Aligned_cols=157  Identities=8%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             CCcCCcceEEEecCCCEEEEecCCeEEEEEcC--CceEE-e-------eeecCccccCeEECCCC-cEEE-EECCCcEEE
Q 017317           74 GILNGPEDVCVDRNGVLYTATRDGWIKRLHKN--GTWEN-W-------KLIGGDTLLGITTTQEN-EILV-CDADKGLLK  141 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~--g~~~~-~-------~~~~~~p~~gl~~d~~g-~L~v-a~~~~gl~~  141 (373)
                      +.-....++++.++|.+++...++.|..++..  ++... +       ........ .++++++| ++++ +...+.|..
T Consensus       175 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~i  253 (447)
T 3dw8_B          175 AHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYSSSKGTIRL  253 (447)
T ss_dssp             CCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEEeCCCeEEE
Confidence            33445678999999888754478999999844  22211 1       11223355 88999998 6554 455455777


Q ss_pred             Ee-cCC-c-----EEEeeccCCcc-------ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317          142 VT-EEG-V-----TVLASHVNGSR-------INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       142 ~~-~~g-~-----~~l~~~~~~~~-------~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      ++ .++ .     ..+........       ...+..+++.++|.+.++.+                 . +.|..+|..+
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~-~~v~iwd~~~  315 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----------------Y-LSVKVWDLNM  315 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----------------S-SEEEEEETTC
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----------------C-CeEEEEeCCC
Confidence            77 555 3     22221110000       01577899999998777643                 2 6788888764


Q ss_pred             -CeEEEeecCCCC----------------cceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          208 -NETSILLDSLFF----------------ANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       208 -~~~~~~~~~~~~----------------~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                       ++..........                ...++|+++++.| ++...++.|..|++...
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          316 ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTC
T ss_pred             CccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCC
Confidence             332211111111                1138999999955 66667788999987654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.003  Score=58.92  Aligned_cols=162  Identities=12%  Similarity=0.101  Sum_probs=93.5

Q ss_pred             eEeccCCcCCcceEEEec-CCCEE-EEecCCeEEEEEc-C---Cc-e--EEeeeecCccccCeEECCCCcEEE-EECCCc
Q 017317           69 TRLGEGILNGPEDVCVDR-NGVLY-TATRDGWIKRLHK-N---GT-W--ENWKLIGGDTLLGITTTQENEILV-CDADKG  138 (373)
Q Consensus        69 ~~~~~g~~~~P~~ia~d~-~G~l~-v~~~~g~I~~~~~-~---g~-~--~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~g  138 (373)
                      ..+.++.-....++++.+ +|.++ +++.+|.|..++. +   +. .  .......+... .+++.+++++++ +...+.
T Consensus        56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVT-QITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEE-EEEECTTSSEEEEEETTSE
T ss_pred             eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEE-EEEEeCCCCEEEEEeCCCE
Confidence            344344445678899999 88766 6778999999982 2   32 1  11112234456 899999887554 454444


Q ss_pred             EEEEe-c---CC-c-EEEeec----cCCc---cccccceeE--EcCCCcEEEEeCCccccccccccccccccCCceEEEE
Q 017317          139 LLKVT-E---EG-V-TVLASH----VNGS---RINLADDLI--AATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKY  203 (373)
Q Consensus       139 l~~~~-~---~g-~-~~l~~~----~~~~---~~~~~~~l~--~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~  203 (373)
                      +..++ .   ++ . ......    ..-.   ....+..+.  ..+++.+.++.+                 ..+.|..+
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~iw  197 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-----------------NLSRVIIF  197 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-----------------TTSEEEEE
T ss_pred             EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-----------------CCCeEEEE
Confidence            55554 2   34 2 211100    0000   111233343  446776655543                 24789999


Q ss_pred             eCCCCeEEEeecC---CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          204 DPSLNETSILLDS---LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       204 d~~~~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      |..+++.......   ......++++++++.++.+ ..++.|..|++..
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~  245 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILG-TTRGIIDIWDIRF  245 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE-ETTSCEEEEETTT
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE-cCCCeEEEEEcCC
Confidence            9887765443332   3456789999999855555 4566788888754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.03  E-value=0.0017  Score=59.64  Aligned_cols=150  Identities=12%  Similarity=0.049  Sum_probs=90.1

Q ss_pred             CCcceEEEec-CCCEE-EEecCCeEEEEEc-CCceEE-ee-------------eecCccccCeEECC-CCc-EEEEECCC
Q 017317           77 NGPEDVCVDR-NGVLY-TATRDGWIKRLHK-NGTWEN-WK-------------LIGGDTLLGITTTQ-ENE-ILVCDADK  137 (373)
Q Consensus        77 ~~P~~ia~d~-~G~l~-v~~~~g~I~~~~~-~g~~~~-~~-------------~~~~~p~~gl~~d~-~g~-L~va~~~~  137 (373)
                      ....++++.+ +|.+. +++.+|.|..++. +++... +.             ....... .+++.+ +++ |+.+...+
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEEETTS
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEEeCCC
Confidence            4457788988 77766 6778999999983 332111 10             0223345 888888 554 44455445


Q ss_pred             cEEEEe-cCC-cEEEeeccCCccccccceeEEcC---CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          138 GLLKVT-EEG-VTVLASHVNGSRINLADDLIAAT---DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       138 gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~---dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      .+..++ .++ ....... .    ..+..+.+.+   ++.+.++..                 ..+.|..+|..+++...
T Consensus       123 ~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNF-E----ETVYSHHMSPVSTKHCLVAVGT-----------------RGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             EEEEEETTTTEEEEEEEC-S----SCEEEEEECSSCSSCCEEEEEE-----------------SSSSEEEEESSSSCCCE
T ss_pred             eEEEeeCCCCccceeccC-C----CceeeeEeecCCCCCcEEEEEc-----------------CCCeEEEEeCCCcceee
Confidence            567777 555 3222221 1    2345666665   344555432                 24678888877665433


Q ss_pred             eec-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          213 LLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       213 ~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ... .......++++++++.++++...++.|..|++..
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            333 2334568999999987666666677899998754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.02  E-value=0.00067  Score=64.44  Aligned_cols=164  Identities=12%  Similarity=0.120  Sum_probs=93.4

Q ss_pred             eEEeeeecCccccCeEECCCCc--EEEEECCCcEEEEecCC-c--EEEeec---c-CC---ccccccceeEEcCC----C
Q 017317          108 WENWKLIGGDTLLGITTTQENE--ILVCDADKGLLKVTEEG-V--TVLASH---V-NG---SRINLADDLIAATD----G  171 (373)
Q Consensus       108 ~~~~~~~~~~p~~gl~~d~~g~--L~va~~~~gl~~~~~~g-~--~~l~~~---~-~~---~~~~~~~~l~~~~d----G  171 (373)
                      ++.++.....|. +|++.++|.  |||++....|+.++.+| .  +.+...   . .+   .....+.+|+++|+    |
T Consensus         6 v~~va~gL~~P~-~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~   84 (463)
T 2wg3_C            6 IQEVVSGLRQPV-GALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG   84 (463)
T ss_dssp             EEEEEEEESSEE-EEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred             EEEeccCCCCce-EEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence            456666678899 999999985  99999866677776444 2  122111   1 11   11245678999985    8


Q ss_pred             cEEEEeCCccccccccccccccccCCceEEEEeCCCC--------eEEEeec-----CCCCcceEEEccCCCEEEEEeCC
Q 017317          172 SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--------ETSILLD-----SLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       172 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--------~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .|||+-+...-+...   .  ......+|.|+....+        ..+++..     ...+...|+|+|||. |||+...
T Consensus        85 ~lYv~yt~~~~~~~~---~--~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           85 KLYVSYTTNQERWAI---G--PHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             EEEEEEEECCCSSCS---S--SSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             EEEEEEeCCCCCccc---C--CcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence            999984320000000   0  0000135666653211        1222221     233445799999996 9997432


Q ss_pred             -----------------CCeEEEEEecCCC------C-----------cceeEEecCCCCCCCceeECCC-----CCEEE
Q 017317          239 -----------------KFRCLKYWLKGES------K-----------EQTEIFVENLPGGPDNIKLAPD-----GSFWI  279 (373)
Q Consensus       239 -----------------~~~i~~~~~~~~~------~-----------~~~~~~~~~~~g~p~~i~~d~d-----G~lwv  279 (373)
                                       ..+|+|++.++..      .           ...++|... ...|-++++|++     |+||+
T Consensus       159 ~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G-~RNp~gla~dp~tg~~~G~l~~  237 (463)
T 2wg3_C          159 GMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHG-LHDPGRCAVDRHPTDININLTI  237 (463)
T ss_dssp             TTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEEC-CSSCCBEEEESSCSSTTCSEEE
T ss_pred             CCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEEC-CCCcceEEECCCCCCcccceEE
Confidence                             3479999987731      0           022445422 235889999987     66554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.00  E-value=7.2e-05  Score=68.60  Aligned_cols=186  Identities=8%  Similarity=-0.081  Sum_probs=100.7

Q ss_pred             CcceEEEecCCC-EEEEecCCeEEEEE-cCCc----eEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-c-
Q 017317           78 GPEDVCVDRNGV-LYTATRDGWIKRLH-KNGT----WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-V-  147 (373)
Q Consensus        78 ~P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~----~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~-  147 (373)
                      ...++++.++|. |.+++.++.|..++ .+++    ...+........ .+++.++|+ |+.+...+.+..++ ..+ . 
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            356788888776 44777889999888 3333    222222234455 888998886 44555545566666 433 1 


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC------------------e
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN------------------E  209 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~------------------~  209 (373)
                      ... ....+.....+.++++.++|.+.++.+.                 .+.|..+|...+                  +
T Consensus       136 ~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          136 WVS-KHLKRPLRSTILSLDWHPNNVLLAAGCA-----------------DRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             CCC-EEECSSCCSCEEEEEECTTSSEEEEEES-----------------SSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             eee-eEeecccCCCeEEEEEcCCCCEEEEEeC-----------------CCEEEEEEEEecccCCCccccccccccchhh
Confidence            111 1111112245788999999986665432                 355666664321                  1


Q ss_pred             EEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcc--eeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          210 TSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ--TEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       210 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .............++|+|+++.++.+ ..++.|..|++.......  ...+. ........+++.++|++.++....
T Consensus       198 ~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          198 VCAEYPSGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             EEECCCCSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSS
T ss_pred             hhhcccCCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCC
Confidence            11111222234678999999955555 456788888876543210  11111 112234567888888877665443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.003  Score=56.88  Aligned_cols=152  Identities=10%  Similarity=0.033  Sum_probs=86.8

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEcCC--------ce-EEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-c
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNG--------TW-ENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-E  144 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g--------~~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~  144 (373)
                      ..-.++++.++|.+. +++.++.|..++...        +. ..+........ ++++.++|+++++ ...+.+..++ .
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEecc
Confidence            345678999988866 677889998887421        11 11112223455 8999999976554 5445566676 3


Q ss_pred             C-C--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE--EeecC-CC
Q 017317          145 E-G--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS--ILLDS-LF  218 (373)
Q Consensus       145 ~-g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~--~~~~~-~~  218 (373)
                      . +  .+.+.. ..+ ....+..+++.|+|.+.++.+.                 .+.|..+|..++..+  ....+ ..
T Consensus       138 ~~~~~~~~~~~-~~~-h~~~v~~v~~~p~~~~l~s~s~-----------------D~~i~iW~~~~~~~~~~~~~~~h~~  198 (330)
T 2hes_X          138 ESGEEYECISV-LQE-HSQDVKHVIWHPSEALLASSSY-----------------DDTVRIWKDYDDDWECVAVLNGHEG  198 (330)
T ss_dssp             TTCCCCEEEEE-ECC-CSSCEEEEEECSSSSEEEEEET-----------------TSCEEEEEEETTEEEEEEEECCCSS
T ss_pred             CCCCCeEEEEE-ecc-CCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEECCCCCeeEEEEccCCCC
Confidence            2 2  232221 111 1235778999999987777543                 345555554434222  22222 23


Q ss_pred             CcceEEEccC--CCEEEEEeCCCCeEEEEEecC
Q 017317          219 FANGVALSKD--EDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       219 ~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ....++|+++  +. .+++...++.|..+++.+
T Consensus       199 ~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          199 TVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CEEEEEECCSSSSC-EEEEEETTSCEEEEEEEE
T ss_pred             cEEEEEecCCCCee-EEEEEeCCCeEEEEEecC
Confidence            3467889998  44 445555566777777643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.99  E-value=0.00066  Score=62.29  Aligned_cols=179  Identities=11%  Similarity=-0.007  Sum_probs=101.9

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEcCCce-EEeeeecCccccCeEECCCCc-EEE-EECCCcEEEEe-cCC---cEEE
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-ENWKLIGGDTLLGITTTQENE-ILV-CDADKGLLKVT-EEG---VTVL  150 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~~-~~~~~~~~~p~~gl~~d~~g~-L~v-a~~~~gl~~~~-~~g---~~~l  150 (373)
                      ..++++.++|... +++.++.|..++.+++. ..+........ .+++.+++. +++ +...+.+..++ .++   ...+
T Consensus       166 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  244 (383)
T 3ei3_B          166 YCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT-HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI  244 (383)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEE-EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred             eEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEE-EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence            4567788877655 67788999999865543 33333344556 899999997 554 45445566677 441   1111


Q ss_pred             eeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-EeecC------CCCcc-
Q 017317          151 ASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILLDS------LFFAN-  221 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~~~------~~~~~-  221 (373)
                      ....   ....+..+++++ +|.+.++.+.                 .+.|..+|..+++.. .+...      ...+. 
T Consensus       245 ~~~~---~~~~v~~~~~s~~~~~~l~~~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  304 (383)
T 3ei3_B          245 AEMP---HEKPVNAAYFNPTDSTKLLTTDQ-----------------RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK  304 (383)
T ss_dssp             EEEE---CSSCEEEEEECTTTSCEEEEEES-----------------SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred             EEec---CCCceEEEEEcCCCCCEEEEEcC-----------------CCcEEEEECCCCccccccccccccccccccceE
Confidence            1111   123577899999 9976665432                 467888887654321 11100      01111 


Q ss_pred             ----------eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCCEEEEEec
Q 017317          222 ----------GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       222 ----------gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~lwva~~~  283 (373)
                                .+++++|++.   +...++.|..|++...+.  ...+... ..+....++++++|++.++..+
T Consensus       305 ~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd  372 (383)
T 3ei3_B          305 ATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFSPTGDVLASGMG  372 (383)
T ss_dssp             CEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEECTTSSEEEEEET
T ss_pred             EeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEecCccEEEEecC
Confidence                      1445555552   334567788888754321  2222211 1234555689999987766643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.98  E-value=0.0057  Score=61.12  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             EEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEee
Q 017317          320 AVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGS  359 (373)
Q Consensus       320 ~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs  359 (373)
                      .+..+| .+|+++..+..+.+.....+ .. ..+|+.|+..
T Consensus       499 ~l~a~D~~tG~~lw~~~~~~~~~~~p~-~y-~~~G~~~v~~  537 (677)
T 1kb0_A          499 RLVAYHAATGEKLWEAPTGTGVVAAPS-TY-MVDGRQYVSV  537 (677)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCE-EE-EETTEEEEEE
T ss_pred             cEEEEECCCCceeeeeeCCCCcccCCE-EE-EeCCEEEEEE
Confidence            578888 57999999987665422222 22 3578888764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.97  E-value=0.00064  Score=70.36  Aligned_cols=180  Identities=12%  Similarity=0.028  Sum_probs=109.4

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEEcCCc-eEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEE
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGT-WENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTV  149 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g~-~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~  149 (373)
                      -....+++++++|.+. +|+.+|.|..++..+. ............ .+++.+ |+ |..+...+.+..++ .++  ...
T Consensus        17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~-~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~   94 (902)
T 2oaj_A           17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK-EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT   94 (902)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE-EEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE-EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence            3457889999998876 7788999999985433 222212223345 889988 77 55566656677777 566  333


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-----------c-CC
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-----------D-SL  217 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-----------~-~~  217 (373)
                      +.  ..    ..+..++++|+|...++.+                 ..|.|..+|.++++...+.           . ..
T Consensus        95 ~~--~~----~~V~~v~~sp~g~~l~sgs-----------------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~  151 (902)
T 2oaj_A           95 VF--VP----GKITSIDTDASLDWMLIGL-----------------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL  151 (902)
T ss_dssp             EE--CS----SCEEEEECCTTCSEEEEEE-----------------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred             Ec--CC----CCEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCccccceeccccccccccccCC
Confidence            32  11    2477899999997555432                 2478888888877643211           0 11


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC-C----------------CCCCCceeECCCCCEEEE
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN-L----------------PGGPDNIKLAPDGSFWIA  280 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~----------------~g~p~~i~~d~dG~lwva  280 (373)
                      .....++|+|++..++++...++.+ .+++...+.  ...+... .                ......+++.++|++.++
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las  228 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT  228 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence            2346899999754455566667777 888754321  1122111 0                022455788899986666


Q ss_pred             Eec
Q 017317          281 ILQ  283 (373)
Q Consensus       281 ~~~  283 (373)
                      ...
T Consensus       229 gs~  231 (902)
T 2oaj_A          229 IHE  231 (902)
T ss_dssp             EET
T ss_pred             EEC
Confidence            543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.97  E-value=0.0084  Score=53.40  Aligned_cols=183  Identities=11%  Similarity=0.005  Sum_probs=103.4

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEcCC-ceEEee-eecCccccCeEECCCCcE-EEEECCCcEEEEe-cCCcEEEe
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENWK-LIGGDTLLGITTTQENEI-LVCDADKGLLKVT-EEGVTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g-~~~~~~-~~~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g~~~l~  151 (373)
                      ....++++.++|.+. ++..++.|..++... ...... ....... ...+.+++.. +.+...+.+..++ ........
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            446778899988765 677889998888433 222222 2223334 5566677754 4455544555566 33322211


Q ss_pred             eccCCccccccceeEEcCCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccC
Q 017317          152 SHVNGSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKD  228 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~d  228 (373)
                      . ..+ ....+..+++.+++  .+.++.+                 ..+.|..+|..+++......+. .....++++|+
T Consensus       166 ~-~~~-~~~~v~~~~~~~~~~~~~~~s~~-----------------~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~  226 (340)
T 4aow_A          166 Q-DES-HSEWVSCVRFSPNSSNPIIVSCG-----------------WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD  226 (340)
T ss_dssp             C-SSS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             E-ecc-ccCcccceEEccCCCCcEEEEEc-----------------CCCEEEEEECCCCceeeEecCCCCcEEEEEECCC
Confidence            1 111 12245566776654  4555533                 2367888888877655444332 23467999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ++.++ +...++.|..|++....  ....+.  .......+++.+++.+.++...+
T Consensus       227 ~~~l~-s~s~Dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          227 GSLCA-SGGKDGQAMLWDLNEGK--HLYTLD--GGDIINALCFSPNRYWLCAATGP  277 (340)
T ss_dssp             SSEEE-EEETTCEEEEEETTTTE--EEEEEE--CSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCEEE-EEeCCCeEEEEEeccCc--eeeeec--CCceEEeeecCCCCceeeccCCC
Confidence            99554 44456788888865432  112221  12234556777888877776554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.96  E-value=0.0094  Score=53.74  Aligned_cols=182  Identities=15%  Similarity=0.167  Sum_probs=99.1

Q ss_pred             CcceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeee---cCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEe
Q 017317           78 GPEDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLA  151 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~  151 (373)
                      ...+|++..++.+|+....|.|++-...| .++.....   ...+..++++++ +++|++....++++-...|  .+.+.
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~  115 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIP  115 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCEECC
T ss_pred             cEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCceECc
Confidence            45667776678889766677777654334 34443221   122222788875 7888875444455543444  44432


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDED  230 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~  230 (373)
                      ... ..+ ..+..|++.+++++|++..                  .|.|++-+-.+...+.+.... ....+++++++++
T Consensus       116 ~~~-~~~-~~~~~i~~~~~~~~~~~~~------------------~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~  175 (327)
T 2xbg_A          116 LDP-KLP-GSPRLIKALGNGSAEMITN------------------VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE  175 (327)
T ss_dssp             CCT-TCS-SCEEEEEEEETTEEEEEET------------------TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC
T ss_pred             ccc-CCC-CCeEEEEEECCCCEEEEeC------------------CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc
Confidence            211 011 1245677777888888753                  256777654444555543322 2235678888887


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                       +|+... ...+++-+-.+..  ...............++++++|++|++...+
T Consensus       176 -~~~~g~-~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          176 -YVAVSS-RGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             -EEEEET-TSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTTSCEEEEETTT
T ss_pred             -EEEEEC-CCcEEEEeCCCCC--ceeECCCCCCCccceeEECCCCCEEEEeCCc
Confidence             454443 3456665422111  1122211122234457778899999887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.95  E-value=0.0026  Score=57.23  Aligned_cols=184  Identities=11%  Similarity=0.033  Sum_probs=101.1

Q ss_pred             EeccCCcCCcceEEEecCCCEE--EEec---CCeEEEEE-cCCceEEee--eecCccccCeEECCC---Cc-EEEEECCC
Q 017317           70 RLGEGILNGPEDVCVDRNGVLY--TATR---DGWIKRLH-KNGTWENWK--LIGGDTLLGITTTQE---NE-ILVCDADK  137 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~--v~~~---~g~I~~~~-~~g~~~~~~--~~~~~p~~gl~~d~~---g~-L~va~~~~  137 (373)
                      .+..+.-....++++.++|..+  +++.   +|.|..++ .+++.....  ....... .+++.++   |+ |+++...+
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK-CGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE-EEECTTCCTTTCCEEEEETTS
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE-EEEEcCCCCCCceEEEecCCC
Confidence            3333434557789999988544  3434   78898888 445443222  2233455 8889887   44 55666555


Q ss_pred             cEEEEe-cCC---cEEEeeccCCcccccccee------EEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCC
Q 017317          138 GLLKVT-EEG---VTVLASHVNGSRINLADDL------IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL  207 (373)
Q Consensus       138 gl~~~~-~~g---~~~l~~~~~~~~~~~~~~l------~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~  207 (373)
                      .+..++ .++   ...+...     ...+..+      ++.++|...++.+.                 .+.|..+|..+
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~s~~~~~l~~~~~-----------------d~~i~vwd~~~  148 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGH-----KEIINAIDGIGGLGIGEGAPEIVTGSR-----------------DGTVKVWDPRQ  148 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCC-----SSCEEEEEEESGGGCC-CCCEEEEEET-----------------TSCEEEECTTS
T ss_pred             eEEEEeCCCCCccEEEEEec-----ccceEEEeeccccccCCCccEEEEEeC-----------------CCeEEEEeCCC
Confidence            677777 443   2222211     1234455      45678876665432                 46788888776


Q ss_pred             Ce--EEEeecCC----CCcceEE----EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC---C
Q 017317          208 NE--TSILLDSL----FFANGVA----LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP---D  274 (373)
Q Consensus       208 ~~--~~~~~~~~----~~~~gi~----~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~---d  274 (373)
                      ++  ...+....    .....++    ++++++.++.+ ..++.|..|++.....   .... ........+++++   +
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~---~~~~-~~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          149 KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNMAL---RWET-NIKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTTEE---EEEE-ECSSCEEEEEESCSSSS
T ss_pred             CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccCce---eeec-CCCCceEEEEcCCCCCC
Confidence            54  22221111    1223444    67899855555 4567899998765432   1111 2234456688887   7


Q ss_pred             CCEEEEE
Q 017317          275 GSFWIAI  281 (373)
Q Consensus       275 G~lwva~  281 (373)
                      |++.++.
T Consensus       224 ~~~l~~~  230 (357)
T 3i2n_A          224 MNKLVAT  230 (357)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEE
Confidence            7755544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.93  E-value=0.011  Score=53.34  Aligned_cols=178  Identities=10%  Similarity=0.023  Sum_probs=101.0

Q ss_pred             CCcceEEE-----ec-CCCEE-EEecCCeEEEEEcC-Cc-------e-EEeeeecCccccCeEECCCCcEEEE-ECCCcE
Q 017317           77 NGPEDVCV-----DR-NGVLY-TATRDGWIKRLHKN-GT-------W-ENWKLIGGDTLLGITTTQENEILVC-DADKGL  139 (373)
Q Consensus        77 ~~P~~ia~-----d~-~G~l~-v~~~~g~I~~~~~~-g~-------~-~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl  139 (373)
                      ..-.++++     .+ +|.+. .++.++.|..++.. ++       . ..+........ .+++.+++.+.++ ...+.+
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~~~~~~~l~s~s~D~~v  100 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-DLALSQENCFAISSSWDKTL  100 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE-EEEECSSTTEEEEEETTSEE
T ss_pred             hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE-EEEECCCCCEEEEEcCCCcE
Confidence            33456776     44 66655 67788999888832 11       1 11111223345 8899999986654 444456


Q ss_pred             EEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-
Q 017317          140 LKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-  215 (373)
Q Consensus       140 ~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-  215 (373)
                      ..++ .++  ...+...     ...+.++++.|+|+..++.+.                 .+.|..+|..+........ 
T Consensus       101 ~lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~  158 (343)
T 2xzm_R          101 RLWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAGA-----------------EREIKLWNILGECKFSSAEK  158 (343)
T ss_dssp             EEEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEET-----------------TSCEEEEESSSCEEEECCTT
T ss_pred             EEEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEcC-----------------CCEEEEEeccCCceeeeecc
Confidence            6667 566  3333211     135778999999987666432                 3667777766433322221 


Q ss_pred             --CCCCcceEEEccCC----------CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          216 --SLFFANGVALSKDE----------DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       216 --~~~~~~gi~~~~dg----------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                        .......++++|++          . ++++...++.|..|+...   .....+. ...+....++++++|++.++..
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNTNF---QIRYTFK-AHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEETTT---EEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcCCC---ceeEEEc-CccccceEEEECCCCCEEEEEc
Confidence              11223567888876          4 455555677888887322   1111222 2223455688899998665543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.93  E-value=0.0017  Score=58.76  Aligned_cols=172  Identities=11%  Similarity=0.011  Sum_probs=96.1

Q ss_pred             CCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECC-------CCcEEEEECCCcEEEEe-cCC--cEEEeeccCC
Q 017317           88 GVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ-------ENEILVCDADKGLLKVT-EEG--VTVLASHVNG  156 (373)
Q Consensus        88 G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~-------~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~~  156 (373)
                      ..+..|..+|.|..++ .+++...... ..... .+.+.+       |+.+.+-+....+..++ ..+  .+.+..   +
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~-~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~---~  123 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTIT-TPNPR-TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV---D  123 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEE-EECCC-TTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC---C
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEe-cCCce-eeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeec---C
Confidence            3455788999999999 4554322111 12223 433333       34444433333333334 233  111111   1


Q ss_pred             ccccccceeEEcC--CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEE
Q 017317          157 SRINLADDLIAAT--DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYL  232 (373)
Q Consensus       157 ~~~~~~~~l~~~~--dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l  232 (373)
                       ....+..+++.+  +|.++++.+.                 .+.|..+|..+++.......  ......++++||++ +
T Consensus       124 -~~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~  184 (343)
T 3lrv_A          124 -SANEIIYMYGHNEVNTEYFIWADN-----------------RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-L  184 (343)
T ss_dssp             -CSSCEEEEECCC---CCEEEEEET-----------------TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-E
T ss_pred             -CCCCEEEEEcCCCCCCCEEEEEeC-----------------CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-E
Confidence             112467889999  8988776542                 47788888887766443322  22467899999998 5


Q ss_pred             EEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          233 VVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      +++...++.|..|++....... ..+...-.+....++++++|++.++...+
T Consensus       185 lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          185 LALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             EEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            5555567789999976543220 12221112345678899999877666544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.92  E-value=0.0056  Score=55.24  Aligned_cols=226  Identities=10%  Similarity=0.026  Sum_probs=121.3

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEEcCC-ceEEeeee---cCccccCeEECCCCcEEEEECCCcEEEEecCC--cEEEeec
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLHKNG-TWENWKLI---GGDTLLGITTTQENEILVCDADKGLLKVTEEG--VTVLASH  153 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~~~g-~~~~~~~~---~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g--~~~l~~~  153 (373)
                      .+|++++ +.+|+....|.|++-...| .++.....   ++.+. +|++..++++|++....++++-...|  .+.+...
T Consensus        83 ~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~  160 (327)
T 2xbg_A           83 NSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPR-LIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQE  160 (327)
T ss_dssp             EEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEE-EEEEEETTEEEEEETTCCEEEESSTTSSEEEEECS
T ss_pred             EEEEecC-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeE-EEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecC
Confidence            4577775 7889766678787754334 34443321   23456 77776778899887655566655445  4444322


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCC-CCeEEEeecC-CCCcceEEEccCCCE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPS-LNETSILLDS-LFFANGVALSKDEDY  231 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-~~~~~~~~~~-~~~~~gi~~~~dg~~  231 (373)
                      ..    ....+++++++|.+|+...                  .|.+++-+.. +...+.+... ......++++++++ 
T Consensus       161 ~~----~~~~~~~~~~~~~~~~~g~------------------~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-  217 (327)
T 2xbg_A          161 AI----GVMRNLNRSPSGEYVAVSS------------------RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-  217 (327)
T ss_dssp             CC----CCEEEEEECTTSCEEEEET------------------TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-
T ss_pred             CC----cceEEEEEcCCCcEEEEEC------------------CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-
Confidence            11    2456788889998887653                  2677776533 2333433221 12335677888887 


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecC-CCC--CCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVEN-LPG--GPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~g--~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      +|++.. ...+++...++.  ......... ++.  ....+++++++.+|++...+                        
T Consensus       218 ~~~~~~-~G~~~~s~~D~G--~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g------------------------  270 (327)
T 2xbg_A          218 LWMIVN-GGKIAFSDPDNS--ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG------------------------  270 (327)
T ss_dssp             EEEEET-TTEEEEEETTEE--EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT------------------------
T ss_pred             EEEEeC-CceEEEecCCCC--CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCC------------------------
Confidence            676654 344554422211  011111100 111  11235567788999987654                        


Q ss_pred             hhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEE-eCCEEEEeeCCCCeEEEeeC
Q 017317          309 IKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALE-FDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~L~vgs~~~~~i~~~~l  370 (373)
                                 .+++-...|+....+....+.. ..+..+.. .++++|+.+..+ .|.+++-
T Consensus       271 -----------~i~~S~DgG~tW~~~~~~~~~~-~~~~~v~~~~~~~~~~~G~~G-~i~~~~~  320 (327)
T 2xbg_A          271 -----------ALLCSQDGGQTWQQDVDVKKVP-SNFYKILFFSPDQGFILGQKG-ILLRYVT  320 (327)
T ss_dssp             -----------CEEEESSTTSSCEECGGGTTSS-SCCCEEEEEETTEEEEECSTT-EEEEECC
T ss_pred             -----------eEEEeCCCCcccEEcCccCCCC-CCeEEEEEECCCceEEEcCCc-eEEEEcC
Confidence                       1333334466655544221111 12334443 467888888755 5766653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.92  E-value=0.0017  Score=59.75  Aligned_cols=152  Identities=13%  Similarity=0.167  Sum_probs=95.8

Q ss_pred             cceEEEec-CCCEE-EEecCCeEEEEEc--CCc-eEEeeeecCccccCeEECCCCcEEEEE-CCCcEEEEe-cCC--cEE
Q 017317           79 PEDVCVDR-NGVLY-TATRDGWIKRLHK--NGT-WENWKLIGGDTLLGITTTQENEILVCD-ADKGLLKVT-EEG--VTV  149 (373)
Q Consensus        79 P~~ia~d~-~G~l~-v~~~~g~I~~~~~--~g~-~~~~~~~~~~p~~gl~~d~~g~L~va~-~~~gl~~~~-~~g--~~~  149 (373)
                      ..++++.+ ++.++ .++.++.|..+|.  .++ ...+....+... .+++.++|+.+++. ..+.+..+| .++  ...
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            34456655 66655 6778999999983  222 333333344556 89999999866654 334566677 666  333


Q ss_pred             EeeccC--CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----CCCCcce
Q 017317          150 LASHVN--GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----SLFFANG  222 (373)
Q Consensus       150 l~~~~~--~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----~~~~~~g  222 (373)
                      +.....  ......+..+++.++|.+.++.+.                 .|.|+.+|..+++......     .......
T Consensus       287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             ECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------------TSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             ecccccccccccCceEEEEECCCCCEEEEEEC-----------------CCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            322111  111234678999999988777543                 4789999987665443221     1223467


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ++++|||+ .+++...++.|..+++.+
T Consensus       350 l~~s~dg~-~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          350 LGLSSDGS-ALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEECSSSS-EEEEECTTSCEEEEECCS
T ss_pred             EEECCCCC-EEEEeeCCCCEEEEecCC
Confidence            99999999 555666677888887665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.91  E-value=0.0025  Score=57.48  Aligned_cols=99  Identities=11%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             cCCcCCcceEEEecC---CC-EEEEecCCeEEEEEc-C-Cce--EEeeeecCccccCeEECCCCcEE-EEECCCcEEEEe
Q 017317           73 EGILNGPEDVCVDRN---GV-LYTATRDGWIKRLHK-N-GTW--ENWKLIGGDTLLGITTTQENEIL-VCDADKGLLKVT  143 (373)
Q Consensus        73 ~g~~~~P~~ia~d~~---G~-l~v~~~~g~I~~~~~-~-g~~--~~~~~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~  143 (373)
                      .+.-..-.++++.++   |. |.+++.+|.|..++. + +..  ..+....+... .+++.++++++ .+...+.+..++
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEE
Confidence            333455678999987   45 447788999999983 3 433  22333344556 89999999755 455545566677


Q ss_pred             -cCC-cEEEeeccCCccccccceeEE--cCCCcEEEEe
Q 017317          144 -EEG-VTVLASHVNGSRINLADDLIA--ATDGSIYFSV  177 (373)
Q Consensus       144 -~~g-~~~l~~~~~~~~~~~~~~l~~--~~dG~l~v~~  177 (373)
                       .++ ...+...     ...+..+++  .++|.++++.
T Consensus       115 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~  147 (368)
T 3mmy_A          115 LSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTG  147 (368)
T ss_dssp             TTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEc
Confidence             556 3332221     124567777  7788655543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=97.89  E-value=0.0013  Score=59.70  Aligned_cols=145  Identities=8%  Similarity=0.034  Sum_probs=79.4

Q ss_pred             ccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccc
Q 017317          117 DTLLGITTTQENEILVC-DADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLE  193 (373)
Q Consensus       117 ~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~  193 (373)
                      ... .+++.++|++.++ ...+.|..++ .++ .........+ ....+..+++.|+|++.++.+.              
T Consensus        18 ~v~-~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~s~--------------   81 (345)
T 3fm0_A           18 RCW-FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-HQRTVRKVAWSPCGNYLASASF--------------   81 (345)
T ss_dssp             CEE-EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSS-CSSCEEEEEECTTSSEEEEEET--------------
T ss_pred             cEE-EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc-cCCcEEEEEECCCCCEEEEEEC--------------
Confidence            345 7899999986654 4444566666 444 2211111111 1235788999999987766432              


Q ss_pred             ccCCceEEEEeCCCCeEE--EeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCcee
Q 017317          194 AKPHGKLLKYDPSLNETS--ILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIK  270 (373)
Q Consensus       194 ~~~~g~l~~~d~~~~~~~--~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~  270 (373)
                         .+.+..+|..++..+  ....+ ......++|+|+++.|+ +...++.|..+++..............-......++
T Consensus        82 ---D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           82 ---DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLA-TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             ---TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             ---CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEE-EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence               244555554434322  22222 23457899999999544 444567788888764322111111111122345577


Q ss_pred             ECCCCCEEEEE
Q 017317          271 LAPDGSFWIAI  281 (373)
Q Consensus       271 ~d~dG~lwva~  281 (373)
                      +.++|++.++.
T Consensus       158 ~~p~~~~l~s~  168 (345)
T 3fm0_A          158 WHPSQELLASA  168 (345)
T ss_dssp             ECSSSSCEEEE
T ss_pred             ECCCCCEEEEE
Confidence            88888755443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.89  E-value=0.00094  Score=67.66  Aligned_cols=185  Identities=17%  Similarity=0.155  Sum_probs=104.8

Q ss_pred             CCcceEEEecCCC-EEEEecCCeEEEEEcC-CceEE---eeeecCccccCeEECCC--CcEE-EEECCCcEEEEe-cCC-
Q 017317           77 NGPEDVCVDRNGV-LYTATRDGWIKRLHKN-GTWEN---WKLIGGDTLLGITTTQE--NEIL-VCDADKGLLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~~g~I~~~~~~-g~~~~---~~~~~~~p~~gl~~d~~--g~L~-va~~~~gl~~~~-~~g-  146 (373)
                      ....++++.++|. |.+++.+|.|..++.. +....   +....+... ++++.++  ++++ .+...+.|..++ .++ 
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            3456677777776 5577789999999832 32222   222223445 8888766  7654 455545577777 555 


Q ss_pred             cEEEeeccCCccccccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeCCCCe---EEEeecCCCCcc
Q 017317          147 VTVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFAN  221 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~~  221 (373)
                      ...+... .+ ....+..+++.++  |.+.++.+.                 .|.|..+|..++.   ............
T Consensus        89 ~~~~~~~-~~-h~~~V~~v~~sp~~~~~~l~sgs~-----------------dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           89 WSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             EEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             ccccccc-cC-CCCCeEEEEECCCCCCCEEEEEeC-----------------CCcEEEEEeecCCCcceeEeecCCCceE
Confidence            3333221 11 1235778999998  876665432                 4778888876552   222222233456


Q ss_pred             eEEEcc-------------CCCEEEEEeCCCCeEEEEEecCCCCc-ceeEEecCCCCCCCceeECCC---CCEEEEEe
Q 017317          222 GVALSK-------------DEDYLVVCETFKFRCLKYWLKGESKE-QTEIFVENLPGGPDNIKLAPD---GSFWIAIL  282 (373)
Q Consensus       222 gi~~~~-------------dg~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~g~p~~i~~d~d---G~lwva~~  282 (373)
                      .++++|             +++.++.+ ..++.|..|++...... ........-.+....+++.++   |++.++..
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            788888             47745444 45677888887653221 111111112234556788888   66555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.88  E-value=0.015  Score=57.03  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=27.1

Q ss_pred             cEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCC
Q 017317          318 KAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLN  361 (373)
Q Consensus       318 ~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~  361 (373)
                      .+.+..+| .+|+.+..+..+.+.....++ . ..+|++|++...
T Consensus       493 dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~-y-~~~G~qyv~~~~  535 (599)
T 1w6s_A          493 DGYLKARDSDTGDLLWKFKIPSGAIGYPMT-Y-THKGTQYVAIYY  535 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEE-E-EETTEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEeeCCCCcEeccEE-E-EeCCEEEEEEEc
Confidence            34678888 569999888776654322222 1 357888886543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.003  Score=57.22  Aligned_cols=185  Identities=11%  Similarity=0.115  Sum_probs=101.7

Q ss_pred             CcceEEEecC--CCE-EEEecCCeEEEEE-cCCceEEe---eeecCccccCeEECCC--CcEE-EEECCCcEEEEe-cCC
Q 017317           78 GPEDVCVDRN--GVL-YTATRDGWIKRLH-KNGTWENW---KLIGGDTLLGITTTQE--NEIL-VCDADKGLLKVT-EEG  146 (373)
Q Consensus        78 ~P~~ia~d~~--G~l-~v~~~~g~I~~~~-~~g~~~~~---~~~~~~p~~gl~~d~~--g~L~-va~~~~gl~~~~-~~g  146 (373)
                      ...++++.++  +.+ ++++.+|.|..++ .+++....   ........ .+++.++  +.++ ++...+.+..++ .++
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            3466777644  554 4777899999998 45542222   22233455 8899888  7654 555555566677 433


Q ss_pred             --cEEEeeccCCccccccceeEEcC-------------CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--
Q 017317          147 --VTVLASHVNGSRINLADDLIAAT-------------DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--  209 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~-------------dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--  209 (373)
                        ........   ....+..+++.+             ++.+.++.+.                 .+.|..+|..+++  
T Consensus       136 ~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          136 GTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQT  195 (379)
T ss_dssp             SCCCEEEEEC---CTTCEEEEEECCCC----------CTTCEEEEEET-----------------TSCEEEEEEETTTTE
T ss_pred             CceeeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeC-----------------CCeEEEEEecCCCcc
Confidence              22211111   112467888888             5766555432                 3566666654332  


Q ss_pred             EEE--eec-CCCCcceEEEccC---CCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCCCCEEE-E
Q 017317          210 TSI--LLD-SLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPDGSFWI-A  280 (373)
Q Consensus       210 ~~~--~~~-~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~dG~lwv-a  280 (373)
                      ...  ... .......++++|+   ++ ++++...++.|..|++..............  .......++++++|++.+ +
T Consensus       196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          196 YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             eeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence            111  112 2234568999999   66 455555667788888765322111122111  223345577888887544 4


Q ss_pred             EecC
Q 017317          281 ILQL  284 (373)
Q Consensus       281 ~~~~  284 (373)
                      ...+
T Consensus       275 ~~dg  278 (379)
T 3jrp_A          275 GGDN  278 (379)
T ss_dssp             ESSS
T ss_pred             cCCC
Confidence            4444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.87  E-value=0.018  Score=53.98  Aligned_cols=152  Identities=13%  Similarity=0.117  Sum_probs=87.0

Q ss_pred             cCCcceEEEecCCCEEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEEC--CCCc-EEEEECCCcEEEEe-cCC--c
Q 017317           76 LNGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTT--QENE-ILVCDADKGLLKVT-EEG--V  147 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d--~~g~-L~va~~~~gl~~~~-~~g--~  147 (373)
                      -....++++.+++.+.+++.+|.|..++ .+++... +........ .+++.  +++. ++.+...+.+..++ .++  .
T Consensus       162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR-CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccE-EEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence            3446678888888777888999999999 4554332 222233344 66665  4655 44555555566677 443  2


Q ss_pred             EEEee-------------------ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC
Q 017317          148 TVLAS-------------------HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (373)
Q Consensus       148 ~~l~~-------------------~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  208 (373)
                      .....                   ...+   +...-..+.++|.+.++.+                 ..+.|..+|..++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-----------------~d~~i~vwd~~~~  300 (464)
T 3v7d_B          241 PDHGEEHDYPLVFHTPEENPYFVGVLRG---HMASVRTVSGHGNIVVSGS-----------------YDNTLIVWDVAQM  300 (464)
T ss_dssp             ------CCSSEEESCGGGCTTEEEEECC---CSSCEEEEEEETTEEEEEE-----------------TTSCEEEEETTTT
T ss_pred             ccccccCCcceEeeccCCCeEEEEEccC---ccceEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCC
Confidence            11100                   0000   0111123345565444432                 2478888998777


Q ss_pred             eEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          209 ETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       209 ~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +......+ ......++++++++.++.+ ..++.|..|++..
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~  341 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLEN  341 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTT
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Confidence            65443332 3345678999999965555 4566788898753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.0011  Score=61.18  Aligned_cols=152  Identities=11%  Similarity=0.081  Sum_probs=96.5

Q ss_pred             CCcceEEEecC-CCEE-EEecCCeEEEEE-cCCceEEeeee-------cCccccCeEECCCC-cEEE-EECCC---cEEE
Q 017317           77 NGPEDVCVDRN-GVLY-TATRDGWIKRLH-KNGTWENWKLI-------GGDTLLGITTTQEN-EILV-CDADK---GLLK  141 (373)
Q Consensus        77 ~~P~~ia~d~~-G~l~-v~~~~g~I~~~~-~~g~~~~~~~~-------~~~p~~gl~~d~~g-~L~v-a~~~~---gl~~  141 (373)
                      ....++++.++ +.++ ++..+|.|..++ ..++.......       ..... .+++.++| .+++ +....   .+..
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS-VVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE-EEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE-EEEECCCCCCEEEEEECCCCCceEEE
Confidence            34567899887 5655 667889999999 44443222222       23355 89999987 4444 44433   5777


Q ss_pred             Ee-cCC---cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-
Q 017317          142 VT-EEG---VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-  215 (373)
Q Consensus       142 ~~-~~g---~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-  215 (373)
                      ++ .++   ...+.   .+ ....+..+++.+ +|.++++.+.                 .+.|..+|..+++...... 
T Consensus       245 ~d~~~~~~~~~~~~---~~-~~~~v~~~~~s~~~~~~l~s~~~-----------------dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          245 WDLRNANTPLQTLN---QG-HQKGILSLDWCHQDEHLLLSSGR-----------------DNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EETTSTTSCSBCCC---SC-CSSCEEEEEECSSCSSCEEEEES-----------------SSEEEEECSSSCCEEEEEEC
T ss_pred             EeCCCCCCCcEEee---cC-ccCceeEEEeCCCCCCeEEEEeC-----------------CCCEEEeeCCCCccceeecC
Confidence            77 443   22221   01 123567899998 7876665432                 4788889987766443332 


Q ss_pred             CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          216 SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       216 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      .......++|+|++..++++...++.|..|++...
T Consensus       304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence            23445789999999447777777888999987643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.84  E-value=0.00048  Score=72.45  Aligned_cols=177  Identities=7%  Similarity=-0.010  Sum_probs=108.3

Q ss_pred             CcceEEEe-cCCCEEEEecCCeEEEEEc-CCceEEeeeecC-ccccCeEECCCCc-EEEEECCCcEE-EEe-cCC-cEEE
Q 017317           78 GPEDVCVD-RNGVLYTATRDGWIKRLHK-NGTWENWKLIGG-DTLLGITTTQENE-ILVCDADKGLL-KVT-EEG-VTVL  150 (373)
Q Consensus        78 ~P~~ia~d-~~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~-~p~~gl~~d~~g~-L~va~~~~gl~-~~~-~~g-~~~l  150 (373)
                      ...++++. ++|...+...++.|+.++. .++...+....+ ... .+++. +|+ |+.+.....++ .++ ..+ .+.+
T Consensus       297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l  374 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF  374 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEE-EECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEE-eeeEc-CCCeEEEEECCCceEEEEECCCCCceEe
Confidence            36789999 9887443333788988884 444444333333 445 67777 775 55544445677 677 445 4443


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg  229 (373)
                      . .    ....+..++++|||+..+....                 .+.|+.+|.++++...+.... .....++|+|||
T Consensus       375 ~-~----~~~~~~~~~~SpDG~~la~~~~-----------------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG  432 (1045)
T 1k32_A          375 E-E----NLGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNS  432 (1045)
T ss_dssp             C-C----CCCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS
T ss_pred             c-C----CccceeeeEECCCCCEEEEECC-----------------CCeEEEEECCCCceEEeccCCCCCccceEECCCC
Confidence            2 1    1134678899999964443221                 368999999888877665333 334789999999


Q ss_pred             CEEEEEeCCC---------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEe
Q 017317          230 DYLVVCETFK---------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       230 ~~l~v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      +++.++....         ..|+.+++.+.+   ...+. ........+++++||+ |++++.
T Consensus       433 ~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~-~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          433 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT-TENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             CEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECS-CSSSBEEEEEECTTSCEEEEEES
T ss_pred             CeEEEEecCccccccCCCCCeEEEEECCCCc---EEEee-CCCcccCCceEcCCCCEEEEEec
Confidence            9887765422         478888876532   22221 1112234577899997 555554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.83  E-value=0.00025  Score=71.19  Aligned_cols=129  Identities=9%  Similarity=-0.036  Sum_probs=81.3

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC----ccccCeEECCCCcEE-EEEC---------CCcEEEEe-
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG----DTLLGITTTQENEIL-VCDA---------DKGLLKVT-  143 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~----~p~~gl~~d~~g~L~-va~~---------~~gl~~~~-  143 (373)
                      .++.+.++|.++....++.|+.++ .+|+.+.+.....    ... .+++.+||+.. ++..         ...++.++ 
T Consensus        19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            356777788766666788999999 4555544433221    145 78899999743 3332         13466677 


Q ss_pred             cCC-c---EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-
Q 017317          144 EEG-V---TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-  217 (373)
Q Consensus       144 ~~g-~---~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-  217 (373)
                      .+| .   ..+    .    ..+..+++.|||+ |.++.                   .+.|+.++..+++...+.... 
T Consensus        98 ~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           98 SNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             TTTEECCSSCC----C----SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCCB
T ss_pred             CCCccccceec----C----cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCCC
Confidence            555 3   222    1    2356789999995 54442                   257888988777655443111 


Q ss_pred             ------------------CCcceEEEccCCCEEEEEe
Q 017317          218 ------------------FFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       218 ------------------~~~~gi~~~~dg~~l~v~~  236 (373)
                                        ....+++|+|||+.|+++.
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence                              1124799999999888765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.81  E-value=0.002  Score=60.43  Aligned_cols=184  Identities=10%  Similarity=0.007  Sum_probs=111.5

Q ss_pred             CCcceEEEecCCC--EEEEecCCeEEEEEcCC-c--------eEEeeeecCccccCeEECC-CCcEEEE-ECCCcEEEEe
Q 017317           77 NGPEDVCVDRNGV--LYTATRDGWIKRLHKNG-T--------WENWKLIGGDTLLGITTTQ-ENEILVC-DADKGLLKVT  143 (373)
Q Consensus        77 ~~P~~ia~d~~G~--l~v~~~~g~I~~~~~~g-~--------~~~~~~~~~~p~~gl~~d~-~g~L~va-~~~~gl~~~~  143 (373)
                      ....++++.+++.  |.++..+|.|..++... .        ...+........ .+++.+ ++.++++ ...+.|..++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            3467899988665  55778899999999322 1        112222233456 889988 5566654 4444566677


Q ss_pred             -cCC-----cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCC-e-EEEee
Q 017317          144 -EEG-----VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-E-TSILL  214 (373)
Q Consensus       144 -~~g-----~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~-~~~~~  214 (373)
                       .++     ...+..     ....++.+++.++|. ++++.+.                 .|.|..+|..+. + ...+.
T Consensus       261 ~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~-----------------dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSA-----------------DKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             TTCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEET-----------------TSEEEEEETTCTTSCSEEEE
T ss_pred             CCCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeC-----------------CCeEEEEeCCCCCCCeEEee
Confidence             432     222211     123578999999985 6665432                 477888887652 2 23333


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcc----------eeEEe-cCCCCCCCceeECCCCC-EEEEEe
Q 017317          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQ----------TEIFV-ENLPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~----------~~~~~-~~~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      ........++|+|+++.++++....+.|..|++.......          ...+. ......+..++++++|. +.++..
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            3334457899999998788888778889999976421100          11111 11123467788999998 665554


Q ss_pred             c
Q 017317          283 Q  283 (373)
Q Consensus       283 ~  283 (373)
                      .
T Consensus       399 ~  399 (430)
T 2xyi_A          399 E  399 (430)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.80  E-value=0.0007  Score=56.95  Aligned_cols=141  Identities=11%  Similarity=0.009  Sum_probs=80.4

Q ss_pred             ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEE---eeccCCccccccceeEEcCCCcEEEEeCCcccccccccccc
Q 017317          117 DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVL---ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDL  191 (373)
Q Consensus       117 ~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l---~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~  191 (373)
                      +.. .|+++++|.||+. ....|++.+ .++ -+..   ...+.....+.-.++.+|++|.||+..              
T Consensus        42 ~~~-~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~--------------  105 (236)
T 1tl2_A           42 NFK-FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS--------------  105 (236)
T ss_dssp             TCS-EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE--------------
T ss_pred             cce-eEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC--------------
Confidence            345 7999999999998 445689988 452 1111   111111122234688999999999983              


Q ss_pred             ccccCCceEEEEeCCCCe-E------EEeec-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEec-CCCCc---ceeEEe
Q 017317          192 LEAKPHGKLLKYDPSLNE-T------SILLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLK-GESKE---QTEIFV  259 (373)
Q Consensus       192 ~~~~~~g~l~~~d~~~~~-~------~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-~~~~~---~~~~~~  259 (373)
                           +|.|||+++-+.. -      ..+.. +-..-.-|.++|+|. ||.+.  +.++++-... +....   ....+.
T Consensus       106 -----dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g  177 (236)
T 1tl2_A          106 -----KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIG  177 (236)
T ss_dssp             -----TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred             -----CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceec
Confidence                 2799999974321 1      11111 222336788999998 89887  4567663321 11111   111111


Q ss_pred             cCCCCCCCceeECCCCCEEEEE
Q 017317          260 ENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       260 ~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      ...-..-.-+.++++|+||...
T Consensus       178 ~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          178 QGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             SSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEEEEECCCCcEEEEe
Confidence            0000011115588999999988

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.80  E-value=0.0047  Score=61.70  Aligned_cols=111  Identities=12%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecC------------ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEe
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG------------DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~------------~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~  151 (373)
                      +|.||+++.++.|+.+| .+|+..-......            ... +++++ +++||+++....|+.+| .+| ...-.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCC-CceEE-CCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            79999999889999999 5776432211111            113 56664 67899998777799999 788 43322


Q ss_pred             ecc-CCcc-ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          152 SHV-NGSR-INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       152 ~~~-~~~~-~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ... .... ........+. +|.+|++....++            ...+.|+.+|..+++...
T Consensus       155 ~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEY------------GVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             cCCcCcCcCcccccCcEEE-CCEEEEEeccccc------------CCCCEEEEEECCCCcEEE
Confidence            211 1000 0111122232 6789998653111            124789999988887553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.79  E-value=0.0032  Score=56.99  Aligned_cols=179  Identities=12%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             ecCCCEEEEe-cCCeEEEEEcCCceEEeeeecCccccCeEECC----CC----cEEEEECC---CcE--EEEe-cCC-cE
Q 017317           85 DRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQ----EN----EILVCDAD---KGL--LKVT-EEG-VT  148 (373)
Q Consensus        85 d~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~----~g----~L~va~~~---~gl--~~~~-~~g-~~  148 (373)
                      |+...+++++ ..++++.++.+|+...... .++++ ++.+.+    .|    .+++++..   +.|  +.++ .++ ++
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~-~g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYN-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEETTSCEEEEEC-CSCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CCCccEEEEEcCCCCEEEEcCCCcEEEEcc-CCCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            3455566665 5678999998887655432 25555 554432    12    23555654   334  4445 344 44


Q ss_pred             EEeec--cCCccccccceeEE--cCC-Cc--EEEEeCCccccccccccccccccCCceEEEEeC---CCCeEE----Eee
Q 017317          149 VLASH--VNGSRINLADDLIA--ATD-GS--IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP---SLNETS----ILL  214 (373)
Q Consensus       149 ~l~~~--~~~~~~~~~~~l~~--~~d-G~--l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~---~~~~~~----~~~  214 (373)
                      .+...  ..+.....+.+|+.  +++ |.  +|+++.                  .|.+..|+.   ..++..    .-+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k------------------~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK------------------EGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS------------------SSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC------------------CCeEEEEEEEeCCCCcccceEEEEe
Confidence            44221  00122356788887  764 54  555543                  255554332   223221    112


Q ss_pred             cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE--e--cCCCCCCCceeE--CCCCC-EEEEEecC
Q 017317          215 DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF--V--ENLPGGPDNIKL--APDGS-FWIAILQL  284 (373)
Q Consensus       215 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~--~~~~g~p~~i~~--d~dG~-lwva~~~~  284 (373)
                      .....+.|++.++....||+++.. .+|++|+.+.....+....  .  ..+..-+.||++  .++|+ +++++..+
T Consensus       177 ~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          177 KMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             cCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            334578899999988889999986 5799999653321111111  1  122234678887  45554 55555443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.79  E-value=0.025  Score=52.90  Aligned_cols=136  Identities=13%  Similarity=0.050  Sum_probs=70.5

Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC--CCCCCCceeECCC
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN--LPGGPDNIKLAPD  274 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~d  274 (373)
                      .+.|..+|..+++......... ..-.++..+++.++ +...++.|..|++...+  ....+...  ..+....+++  +
T Consensus       298 d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~--~  371 (445)
T 2ovr_B          298 DTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILV-SGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQF--N  371 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEE-EEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEE--C
T ss_pred             CCeEEEEECCCCCEEEEEcCCc-ccEEEEEEeCCEEE-EEeCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEE--C
Confidence            4678888887766543333221 12233445666444 44456788889875432  12222210  1122333455  3


Q ss_pred             CCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCC-CCceecceeEEEEeC
Q 017317          275 GSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDP-NGKVMSFVTSALEFD  352 (373)
Q Consensus       275 G~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~-~g~~~~~~~~~~~~~  352 (373)
                      +++.++....                                  +.+..++ .+|+.+..+... .+.....+..+...+
T Consensus       372 ~~~l~s~~~d----------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          372 KNFVITSSDD----------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             SSEEEEEETT----------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             CCEEEEEeCC----------------------------------CeEEEEECCCCceeeeeeccccCCCCceEEEEEecC
Confidence            5554443322                                  2466677 567877777321 122234577777775


Q ss_pred             CE--EEEeeCCCC---eEEEeeCCC
Q 017317          353 DH--LYLGSLNTN---FIGKLPLKA  372 (373)
Q Consensus       353 g~--L~vgs~~~~---~i~~~~l~~  372 (373)
                      +.  |..|+..+.   +|..+++..
T Consensus       418 ~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          418 TKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEEcccCCCCccEEEEEECCC
Confidence            43  445554443   588887764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.77  E-value=0.0001  Score=68.16  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=60.6

Q ss_pred             EEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC-cE-EEeeccCCc
Q 017317           83 CVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG-VT-VLASHVNGS  157 (373)
Q Consensus        83 a~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g-~~-~l~~~~~~~  157 (373)
                      +++ ++.+|+++.+|.|+.+| .+|+....... +... +..+..+|.+|++ ...+.++.+| .+| .. .........
T Consensus         6 ~v~-~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            6 TLP-ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             --C-TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eee-CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            554 78999999999999999 67865432222 3333 3333356777776 3445688888 567 32 221110000


Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                       .  ....++..++.+|++..                  .+.|+.+|.++|+......   ......++++++.+|++. 
T Consensus        83 -~--~~sp~~~~~~~v~~g~~------------------dg~v~a~D~~tG~~~w~~~---~~~~~~~~p~~~~v~~~~-  137 (369)
T 2hz6_A           83 -V--QASPCRSSDGILYMGKK------------------QDIWYVIDLLTGEKQQTLS---SAFADSLSPSTSLLYLGR-  137 (369)
T ss_dssp             -H--TTCSCC-----CCCCEE------------------EEEEEEECCC-------------------------EEEEE-
T ss_pred             -c--ccCceEecCCEEEEEeC------------------CCEEEEEECCCCcEEEEec---CCCcccccccCCEEEEEe-
Confidence             0  01112223567777643                  3689999998887543221   112244556777677764 


Q ss_pred             CCCeEEEEEecCC
Q 017317          238 FKFRCLKYWLKGE  250 (373)
Q Consensus       238 ~~~~i~~~~~~~~  250 (373)
                      .++.|+.++....
T Consensus       138 ~dg~v~a~d~~tG  150 (369)
T 2hz6_A          138 TEYTITMYDTKTR  150 (369)
T ss_dssp             EEEEEECCCSSSS
T ss_pred             cCCEEEEEECCCC
Confidence            3457888886543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.77  E-value=0.019  Score=51.06  Aligned_cols=185  Identities=11%  Similarity=0.031  Sum_probs=100.2

Q ss_pred             cCCcCCcceEEEecC-CCEE-EEecCCeEEEEEc-CCc------eEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEE
Q 017317           73 EGILNGPEDVCVDRN-GVLY-TATRDGWIKRLHK-NGT------WENWKLIGGDTLLGITTTQENEILVC-DADKGLLKV  142 (373)
Q Consensus        73 ~g~~~~P~~ia~d~~-G~l~-v~~~~g~I~~~~~-~g~------~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~  142 (373)
                      .|--..-.+|++.|+ +++. .++.++.|..++. .++      ...+........ .+++.++|++.++ .....+..+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEE
Confidence            344455678999985 5655 6778999998882 221      111111223455 8899999986554 444445555


Q ss_pred             e-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cC-CC
Q 017317          143 T-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DS-LF  218 (373)
Q Consensus       143 ~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~-~~  218 (373)
                      + ..+ ........    ......+.+.+++...++.+.                 .+.+..+|.......... .. ..
T Consensus       114 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~s~s~-----------------d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A          114 DLTTGTTTRRFVGH----TKDVLSVAFSSDNRQIVSGSR-----------------DKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             ETTTTEEEEEEECC----SSCEEEEEECTTSSCEEEEET-----------------TSCEEEECTTSCEEEEECSSSCSS
T ss_pred             eecccceeeeecCC----CCceeEEEEeecCccceeecC-----------------CCeEEEEEeCCCceEEEEeccccC
Confidence            5 333 22221111    123445567777765555332                 356777776544333221 11 22


Q ss_pred             CcceEEEccCCCE-EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          219 FANGVALSKDEDY-LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       219 ~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ....+++++++.. ++++...+..|..+++....  ....+. .-.+....++++++|++.++..
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHI-GHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEec-CCCCcEEEEEECCCCCEEEEEe
Confidence            3356777776543 45555556678888765432  111221 2223345678899998766543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.74  E-value=0.0039  Score=56.10  Aligned_cols=201  Identities=11%  Similarity=-0.010  Sum_probs=103.2

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeeecCccccCeEE--CCCCcEE-EEECCCcEEEEe-cCC--cE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLIGGDTLLGITT--TQENEIL-VCDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~--d~~g~L~-va~~~~gl~~~~-~~g--~~  148 (373)
                      ....++++.++|... +++.+|.|..++ .+++............ .+++  +++++++ .+...+.+..++ .++  ..
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence            345678888887654 777899999999 4555444433344556 8888  8888744 455545567777 555  33


Q ss_pred             EEeeccCC--ccccccceeEEcCCCcEEEEeCCcccc------------ccc---------cccccccccCCceEEEEeC
Q 017317          149 VLASHVNG--SRINLADDLIAATDGSIYFSVASTKFG------------LHN---------WGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       149 ~l~~~~~~--~~~~~~~~l~~~~dG~l~v~~~~~~~~------------~~~---------~~~~~~~~~~~g~l~~~d~  205 (373)
                      .+......  .......-+....++.+.+-+......            ...         ....+..+...+.|..+|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          166 VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred             EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence            33211000  000011112222334333322211000            000         0000333444566777776


Q ss_pred             CCCeE----EEeecCCC------------CcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCce
Q 017317          206 SLNET----SILLDSLF------------FANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNI  269 (373)
Q Consensus       206 ~~~~~----~~~~~~~~------------~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i  269 (373)
                      +....    ..+.....            ....++++|+++.++.+. .++.|..|++....  ....+. ...+....+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~-~~~~~v~~~  321 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDART--KLKTSE-QLDQPISAC  321 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTE--EEEECC-CCSSCEEEE
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCc--EEEEec-CCCCCceEE
Confidence            54421    11111111            356799999998665554 56778889875421  111111 222345678


Q ss_pred             eECCCCCEEEEEe
Q 017317          270 KLAPDGSFWIAIL  282 (373)
Q Consensus       270 ~~d~dG~lwva~~  282 (373)
                      +++++|.+.++..
T Consensus       322 ~~s~~g~~l~~~s  334 (368)
T 3mmy_A          322 CFNHNGNIFAYAS  334 (368)
T ss_dssp             EECTTSSCEEEEE
T ss_pred             EECCCCCeEEEEe
Confidence            8999997655543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.71  E-value=0.0055  Score=55.14  Aligned_cols=146  Identities=8%  Similarity=0.011  Sum_probs=83.7

Q ss_pred             CcceEEEecCCC-EEEEe-cC--C--eEEEEEc-CCceEEeeeecCccccCeEECCCCc-EEEEEC--------------
Q 017317           78 GPEDVCVDRNGV-LYTAT-RD--G--WIKRLHK-NGTWENWKLIGGDTLLGITTTQENE-ILVCDA--------------  135 (373)
Q Consensus        78 ~P~~ia~d~~G~-l~v~~-~~--g--~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~--------------  135 (373)
                      ...++++.|+|+ |.+.. ..  +  .|+.++. .|+...+..... .. ++++.+||+ |+++..              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            345678888886 43333 22  3  4888884 455444433333 56 889999996 554431              


Q ss_pred             -------------CCcEEEEe-cCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCce
Q 017317          136 -------------DKGLLKVT-EEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGK  199 (373)
Q Consensus       136 -------------~~gl~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~  199 (373)
                                   ...|+.++ .+| . +.+..     +  .+..+++.+|| ++++.....-       .. .......
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~~-------~~-~~~~~~~  201 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHREI-------IP-QYFKFWD  201 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCCS-------SC-CSSCCEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEecccc-------cc-ccccccc
Confidence                         13477777 566 4 55432     1  35678899999 7665422000       00 0001357


Q ss_pred             EEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC-------CCeEEEEE
Q 017317          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF-------KFRCLKYW  246 (373)
Q Consensus       200 l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~  246 (373)
                      ||.+|  +++.+.+... . . -..++|||+.++++...       ...|+.++
T Consensus       202 l~~~d--~~~~~~l~~~-~-~-~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK-V-S-FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             EEEEE--TTEEEEEEEE-E-S-EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             EEEeC--CCceEEeccC-c-c-eeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            99999  5666655443 2 1 22348999988776543       24787777

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.0033  Score=60.83  Aligned_cols=149  Identities=7%  Similarity=-0.026  Sum_probs=91.6

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEc-CCc-e-EEeeeecCccccCe--EECCCC-cEEEE-ECCCcEEEEe-cCC--cE
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHK-NGT-W-ENWKLIGGDTLLGI--TTTQEN-EILVC-DADKGLLKVT-EEG--VT  148 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~-~g~-~-~~~~~~~~~p~~gl--~~d~~g-~L~va-~~~~gl~~~~-~~g--~~  148 (373)
                      ..++++.+++.|.+|+.+|.|..++. ++. . ..+........ ++  ++.++| .++++ ...+.+..+| .++  ..
T Consensus       269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred             EEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence            45677777778889999999999994 342 2 22222233345 77  456777 66554 4444456666 555  33


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-EEeecCCCCcceEEEcc
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-SILLDSLFFANGVALSK  227 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-~~~~~~~~~~~gi~~~~  227 (373)
                      .+.....+   ..+..+++.|+|..+++.+.                 .+.|..+|..++.. ..+.........++|+|
T Consensus       348 ~~~~~~~~---~~v~~v~fsp~~~~l~s~~~-----------------d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          348 TTVSRFRG---SNLVPVVYCPQIYSYIYSDG-----------------ASSLRAVPSRAAFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             EEEEECSC---CSCCCEEEETTTTEEEEECS-----------------SSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred             cccccccc---CcccceEeCCCcCeEEEeCC-----------------CCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence            33222111   12568899999988776543                 35677778766543 33333334567899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecC
Q 017317          228 DEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +|+. +++...++.|..++...
T Consensus       408 ~g~~-l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          408 LHPM-VLAGSADGSLIITNAAR  428 (524)
T ss_dssp             SCCB-CEEEETTTEEECCBSCS
T ss_pred             CCCe-EEEEECCCEEEEEechH
Confidence            9984 45555677788777544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.68  E-value=0.0065  Score=54.98  Aligned_cols=133  Identities=16%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             eEEEEeCCCCeEEEee-------cCCCCcceEEE--ccC-CC-EEEEEeCCCCeEEEEEecCCC---Cc--ceeEEecCC
Q 017317          199 KLLKYDPSLNETSILL-------DSLFFANGVAL--SKD-ED-YLVVCETFKFRCLKYWLKGES---KE--QTEIFVENL  262 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~-------~~~~~~~gi~~--~~d-g~-~l~v~~~~~~~i~~~~~~~~~---~~--~~~~~~~~~  262 (373)
                      .+|.+|++++....+.       ..+..|.|+++  +++ ++ ++|+++. ..++..|.+....   ..  ..+.+  .+
T Consensus       102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k-~G~~~q~~l~~~~~g~~~~~lVR~f--~l  178 (355)
T 3amr_A          102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK-EGEFEQYELKADKNGYISGKKVRAF--KM  178 (355)
T ss_dssp             EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS-SSEEEEEEEEECTTSCEEEEEEEEE--EC
T ss_pred             EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC-CCeEEEEEEEeCCCCcccceEEEEe--cC
Confidence            4566688887776652       33477899999  664 43 4666665 4788888774221   11  11222  34


Q ss_pred             CCCCCceeECC-CCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCC------CcEEEEEe
Q 017317          263 PGGPDNIKLAP-DGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAAN------GIVIRKFE  335 (373)
Q Consensus       263 ~g~p~~i~~d~-dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~------g~~~~~~~  335 (373)
                      ++-|.+++.|+ .|+||++....                                   .|.+|+.+      ++.+..+.
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~-----------------------------------GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDE-----------------------------------AIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTT-----------------------------------EEEEEECSTTSCSCCEEEEEBS
T ss_pred             CCCcceEEEcCCCCeEEEecccc-----------------------------------eEEEEeCCcCCCCCceEEEEec
Confidence            56788899885 67899998764                                   36777733      33443332


Q ss_pred             CCCCceecceeEEEE--e-C--CEEEEeeCCCCeEEEeeCC
Q 017317          336 DPNGKVMSFVTSALE--F-D--DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       336 ~~~g~~~~~~~~~~~--~-~--g~L~vgs~~~~~i~~~~l~  371 (373)
                        .+.....+..+..  . +  ++|++++.+.+...+|+..
T Consensus       224 --~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          224 --GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             --SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             --CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence              2221223555543  2 1  4799999888899988875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.66  E-value=0.011  Score=59.19  Aligned_cols=183  Identities=11%  Similarity=0.104  Sum_probs=96.8

Q ss_pred             ceEEEecCCCEEE--Eec----CCeEEEEE-cCCceEEeeeecCc-cccCeEECCCCc-EEEEECCCc------------
Q 017317           80 EDVCVDRNGVLYT--ATR----DGWIKRLH-KNGTWENWKLIGGD-TLLGITTTQENE-ILVCDADKG------------  138 (373)
Q Consensus        80 ~~ia~d~~G~l~v--~~~----~g~I~~~~-~~g~~~~~~~~~~~-p~~gl~~d~~g~-L~va~~~~g------------  138 (373)
                      .++++.|||+..+  .+.    ...|+.++ .+|+.......... .. ++++.+||+ |+.+.....            
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            4567888888653  222    24688888 44543301111111 25 889999997 444443222            


Q ss_pred             -EEEEe-cCC-c--EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          139 -LLKVT-EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       139 -l~~~~-~~g-~--~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                       |++++ .++ .  +.+... .+. .....++.+++||+ |.++...              ......||.++..+++.+.
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~-~~~-~~~~~~~~~SpDG~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~~  266 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHER-TGD-PTTFLQSDLSRDGKYLFVYILR--------------GWSENDVYWKRPGEKDFRL  266 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECC-CCC-TTCEEEEEECTTSCCEEEEEEE--------------TTTEEEEEEECTTCSSCEE
T ss_pred             EEEEEECCCCchhceEEEec-CCC-CEEEEEEEECCCCCEEEEEEeC--------------CCCceEEEEEcCCCCceEE
Confidence             78877 445 2  233222 111 12345788999995 5554321              0023478888876666665


Q ss_pred             eecCCCCcceEEEccCCCEEEEEeC---CCCeEEEEEecCCCCcceeEEecCC-CCCCCceeECCCCCEEEEEe
Q 017317          213 LLDSLFFANGVALSKDEDYLVVCET---FKFRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       213 ~~~~~~~~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~dG~lwva~~  282 (373)
                      +...........+ ++|+ +|+...   .+.+|+++++++........+.... .....+++++ ++.+++...
T Consensus       267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            5544333333433 7887 777654   3578999987654322223333221 1123345555 566666544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.63  E-value=0.043  Score=53.69  Aligned_cols=40  Identities=28%  Similarity=0.314  Sum_probs=26.7

Q ss_pred             EEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeC
Q 017317          319 AAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSL  360 (373)
Q Consensus       319 g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~  360 (373)
                      +.+..+| .+|+.+..+..+.+.....++ . ..+|++|++..
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~-y-~~~G~qYv~~~  547 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIVSPPIT-W-EQDGEQYLGVT  547 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEE-E-EETTEEEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCCcccCceE-E-EECCEEEEEEE
Confidence            3578898 579999998877654222222 1 36889888854

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.63  E-value=0.024  Score=56.72  Aligned_cols=177  Identities=11%  Similarity=0.054  Sum_probs=90.8

Q ss_pred             ceEEEecCCCEE--EEecC----CeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCC-------------c
Q 017317           80 EDVCVDRNGVLY--TATRD----GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADK-------------G  138 (373)
Q Consensus        80 ~~ia~d~~G~l~--v~~~~----g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~-------------g  138 (373)
                      .++++.|||+..  ..+..    ..|+.++ .+|+............ ++++. ||+ |+++....             .
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            345778888744  33322    3577777 4565433211111124 67787 775 66654331             2


Q ss_pred             EEEEe-cCC---cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCC--eEE
Q 017317          139 LLKVT-EEG---VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ETS  211 (373)
Q Consensus       139 l~~~~-~~g---~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~~~  211 (373)
                      |++++ .++   .+.+.......+ ....++.+++||+ |+++...              ......||.+|.+++  ..+
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQH-HRYVGATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGC-CSEEEEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTTCCCE
T ss_pred             EEEEECCCCcccceEEEecCCCCC-eEEEEEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCCCceE
Confidence            66666 333   133322111001 1234678899996 5555332              112247899987654  444


Q ss_pred             EeecCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE
Q 017317          212 ILLDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       212 ~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l  277 (373)
                      .+...... .--.++++|+.+|+....   +.+|+++++++......+.+.......   +.++.+|+.
T Consensus       275 ~l~~~~~~-~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~~~s~~g~~  339 (693)
T 3iuj_A          275 TVQGDLDA-DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV---LTVHSGSGY  339 (693)
T ss_dssp             EEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC---EEEEEETTE
T ss_pred             EEeCCCCc-eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE---EEEEEECCE
Confidence            44433222 112267788878877543   368999998765443334444322222   245555653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.61  E-value=0.0025  Score=63.83  Aligned_cols=162  Identities=6%  Similarity=-0.020  Sum_probs=85.2

Q ss_pred             cceEEEecCCCEE-EEec---------CCeEEEEEc-CCce---EEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-
Q 017317           79 PEDVCVDRNGVLY-TATR---------DGWIKRLHK-NGTW---ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-  143 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~---------~g~I~~~~~-~g~~---~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-  143 (373)
                      ..++++.|||+.. ++..         ++.|+.++. +|+.   ..+   ..... .+++.+||+..+......|+.++ 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeC
Confidence            5678999999854 4443         478888884 4444   222   23456 88999999744333345688888 


Q ss_pred             cCC-cEEEeecc-CC-----cc--------ccccceeEEcCCCc-EEEEeCCccccccccc-----------------cc
Q 017317          144 EEG-VTVLASHV-NG-----SR--------INLADDLIAATDGS-IYFSVASTKFGLHNWG-----------------LD  190 (373)
Q Consensus       144 ~~g-~~~l~~~~-~~-----~~--------~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~-----------------~~  190 (373)
                      .+| ...+.... ..     .+        +....++++.|||+ |.++.... -....+.                 ..
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND-TDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC-TTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCccceeecCCC
Confidence            566 44432111 00     00        01224789999996 44432110 0000000                 00


Q ss_pred             cccccCCceEEEEeCCCCeEE---Eee------cCCCCcceEEEccCCCEEEEE--eCCC--CeEEEEE
Q 017317          191 LLEAKPHGKLLKYDPSLNETS---ILL------DSLFFANGVALSKDEDYLVVC--ETFK--FRCLKYW  246 (373)
Q Consensus       191 ~~~~~~~g~l~~~d~~~~~~~---~~~------~~~~~~~gi~~~~dg~~l~v~--~~~~--~~i~~~~  246 (373)
                      .........|+.+|.++++..   .+.      ........++|+||++ ++++  +...  ..|+.++
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEc
Confidence            001112337888888766531   221      1112235789999976 5554  2222  3477777

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.59  E-value=0.0095  Score=55.76  Aligned_cols=148  Identities=11%  Similarity=0.053  Sum_probs=86.1

Q ss_pred             CcceEEEec-CCC-EEEEecCCeEEEEEcCCc-eEEeeeec---CccccCeEECCCCcEEEE-ECCCcEEEEecCC--cE
Q 017317           78 GPEDVCVDR-NGV-LYTATRDGWIKRLHKNGT-WENWKLIG---GDTLLGITTTQENEILVC-DADKGLLKVTEEG--VT  148 (373)
Q Consensus        78 ~P~~ia~d~-~G~-l~v~~~~g~I~~~~~~g~-~~~~~~~~---~~p~~gl~~d~~g~L~va-~~~~gl~~~~~~g--~~  148 (373)
                      .-.+|++.| ++. |+.++.+|.|..+|..+. ...+....   .... .++++++|.++++ ...+.|..++.++  +.
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~  244 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILLNMDGKELW  244 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETTTTEEEEECSSSBEEEEESSSCBCC
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCCCCEEEEEeCCCcEeeeccCcceeE
Confidence            356788986 565 557778999999995443 33332211   1234 7889999986665 4434466666333  22


Q ss_pred             EEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-Eee--cC-CCCcceE
Q 017317          149 VLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-ILL--DS-LFFANGV  223 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-~~~--~~-~~~~~gi  223 (373)
                      .+.    + ....+.++++.|++. +.++.+.                 .+.|..+|..+.+.. .+.  .+ ......+
T Consensus       245 ~~~----~-h~~~v~~v~~~p~~~~~~~s~s~-----------------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  302 (435)
T 4e54_B          245 NLR----M-HKKKVTHVALNPCCDWFLATASV-----------------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAA  302 (435)
T ss_dssp             CSB----C-CSSCEEEEEECTTCSSEEEEEET-----------------TSBCCEEETTTCCSSSCCSBCCBCSSCEEEC
T ss_pred             EEe----c-ccceEEeeeecCCCceEEEEecC-----------------cceeeEEecccccccceEEEeeeccccccce
Confidence            221    1 113577899999885 5444322                 355666665543211 111  11 1223578


Q ss_pred             EEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          224 ALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       224 ~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +|+|||+.|+.+ ..++.|..|++..
T Consensus       303 ~~spdg~~l~s~-~~D~~i~iwd~~~  327 (435)
T 4e54_B          303 CFSPDGARLLTT-DQKSEIRVYSASQ  327 (435)
T ss_dssp             CBCTTSSEEEEE-ESSSCEEEEESSS
T ss_pred             eECCCCCeeEEE-cCCCEEEEEECCC
Confidence            899999955544 4567788888754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.55  E-value=0.053  Score=54.20  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             EEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeC
Q 017317          319 AAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSL  360 (373)
Q Consensus       319 g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~  360 (373)
                      +.+..+| .+|+.+..+..+.+.....++.  ..+|+.|++..
T Consensus       496 g~l~a~D~~tG~~lw~~~~~~~~~~~p~ty--~~~G~qyv~~~  536 (689)
T 1yiq_A          496 GRVIAYAADTGEKLWEQPAASGVMAAPVTY--SVDGEQYVTFM  536 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEE
T ss_pred             CcEEEEECCCCccceeeeCCCCcccCceEE--EECCEEEEEEE
Confidence            3588898 5699999888776543222222  46889998865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.55  E-value=0.026  Score=50.29  Aligned_cols=150  Identities=14%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEE-cCCceE---EeeeecCccccCeEECC--CCc-EEEEECCCcEEEEe-cCC-c
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE---NWKLIGGDTLLGITTTQ--ENE-ILVCDADKGLLKVT-EEG-V  147 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~---~~~~~~~~p~~gl~~d~--~g~-L~va~~~~gl~~~~-~~g-~  147 (373)
                      .-.+++++++|++. +++.++.|..++ .+++..   .+....+... .+++.+  +|+ |..+...+.+..++ +++ .
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~   93 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGTW   93 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence            34678898888765 677899999988 444322   2222233455 788864  355 55556556677777 555 3


Q ss_pred             EEEeeccCCccccccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEEe--ecC-CCCcc
Q 017317          148 TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSIL--LDS-LFFAN  221 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~--~~~-~~~~~  221 (373)
                      +.... ..+. ...++++++.|+  |.+.++.+.                 .+.|..+|..++ .....  ... ....+
T Consensus        94 ~~~~~-~~~h-~~~V~~v~~~p~~~g~~lasgs~-----------------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           94 EKSHE-HAGH-DSSVNSVCWAPHDYGLILACGSS-----------------DGAISLLTYTGEGQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             CEEEE-ECCC-SSCCCEEEECCTTTCSCEEEECS-----------------SSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred             eEEEE-ccCC-CCceEEEEECCCCCCcEEEEEcC-----------------CCCEEEEecCCCCCcceeeeeccccCCcc
Confidence            32221 1111 135788999987  665555432                 355665655433 22211  111 12235


Q ss_pred             eEEEccCC-----------------CEEEEEeCCCCeEEEEEec
Q 017317          222 GVALSKDE-----------------DYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       222 gi~~~~dg-----------------~~l~v~~~~~~~i~~~~~~  248 (373)
                      .++++|+.                 + ++++...++.|..+++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEEC
T ss_pred             eEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeC
Confidence            67777762                 3 45555556677777764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.54  E-value=0.03  Score=56.38  Aligned_cols=184  Identities=10%  Similarity=0.074  Sum_probs=95.2

Q ss_pred             ceEEEecCCCEE-EE-ecCC----eEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEEECCC--------------c
Q 017317           80 EDVCVDRNGVLY-TA-TRDG----WIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVCDADK--------------G  138 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~-~~~g----~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~--------------g  138 (373)
                      .++++.|||+.. ++ +.+|    .|+.++ .+|+............ ++++.+|..|+++....              .
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~  244 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQT  244 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCE
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCE
Confidence            346778888754 32 3333    488888 4555433211111224 78898884466654322              2


Q ss_pred             EEEEe-cCC-c--EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCC--e-E
Q 017317          139 LLKVT-EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--E-T  210 (373)
Q Consensus       139 l~~~~-~~g-~--~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~-~  210 (373)
                      |++++ .++ .  ..+... .+.+ ....++.+++||+ |.++....             ......|+.+|.+++  + .
T Consensus       245 v~~~~lgt~~~~~~lv~~~-~~~~-~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~  309 (741)
T 1yr2_A          245 VWLHRLGTPQSADQPVFAT-PELP-KRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPV  309 (741)
T ss_dssp             EEEEETTSCGGGCEEEECC-TTCT-TCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCC
T ss_pred             EEEEECCCCchhCEEEecc-CCCC-eEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCccc
Confidence            66666 444 2  233222 1111 1345778999995 55543210             012357888887766  4 4


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEeCC---CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          211 SILLDSLFFANGVALSKDEDYLVVCETF---KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       211 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +.+.......... +++||+.+|+....   +.+|+++++++.. .....+.........++..+ ++.+++...
T Consensus       310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred             EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence            5544333222223 45899988887642   4579999876532 23333332222222344554 455555543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.54  E-value=0.057  Score=50.40  Aligned_cols=221  Identities=14%  Similarity=0.082  Sum_probs=116.6

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeec
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH  153 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~  153 (373)
                      ..+++++ ++.+++++.+|.|..++ .+++... +........ .+.++ ++.++++...+.+..++ .++  ...+...
T Consensus       162 v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          162 VWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-CMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             EEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE-EEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            3445555 44566777888888888 4444322 222223344 66675 33566666655567777 555  3333211


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcceEEEccCCCEE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANGVALSKDEDYL  232 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~gi~~~~dg~~l  232 (373)
                           ...+..+.+  +|..+++.+                 ..+.|..+|..+++........ .....+++  +++.+
T Consensus       239 -----~~~v~~~~~--~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  292 (445)
T 2ovr_B          239 -----VAAVRCVQY--DGRRVVSGA-----------------YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHV  292 (445)
T ss_dssp             -----SSCEEEEEE--CSSCEEEEE-----------------TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEE
T ss_pred             -----cccEEEEEE--CCCEEEEEc-----------------CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEE
Confidence                 123455666  554444332                 2467888887766544333322 22334555  77755


Q ss_pred             EEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE-ecCCCchhhhccCChHHHHHHHhcchhhhh
Q 017317          233 VVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI-LQLSSPGLEFVHTSKATKHLLAAFPKLIKL  311 (373)
Q Consensus       233 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  311 (373)
                      +.+. .++.|..|++...+.  ...+. ........+..  +|++.++. ..+                           
T Consensus       293 ~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg---------------------------  339 (445)
T 2ovr_B          293 VSGS-LDTSIRVWDVETGNC--IHTLT-GHQSLTSGMEL--KDNILVSGNADS---------------------------  339 (445)
T ss_dssp             EEEE-TTSCEEEEETTTCCE--EEEEC-CCCSCEEEEEE--ETTEEEEEETTS---------------------------
T ss_pred             EEEe-CCCeEEEEECCCCCE--EEEEc-CCcccEEEEEE--eCCEEEEEeCCC---------------------------
Confidence            5554 567788898754321  11221 11122233443  45544443 333                           


Q ss_pred             ccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          312 VAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       312 ~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                              .+..+| .+++.+..+..+... ...++.+..+++.|..|+. ...|..+++.
T Consensus       340 --------~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~-dg~v~iwd~~  390 (445)
T 2ovr_B          340 --------TVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSD-DGTVKLWDLK  390 (445)
T ss_dssp             --------CEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEET-TSEEEEEETT
T ss_pred             --------eEEEEECCCCcEEEEEccCCCC-CCCEEEEEECCCEEEEEeC-CCeEEEEECC
Confidence                    355666 367777777653322 3456777766666766664 3457666654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.022  Score=51.11  Aligned_cols=142  Identities=9%  Similarity=0.060  Sum_probs=74.6

Q ss_pred             CeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCc
Q 017317          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHG  198 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g  198 (373)
                      .+.++++ .|..+...+.+..++ ..+ .+.+.....+.....+.++++.|+|.+.++.+.                 .+
T Consensus        19 ~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-----------------D~   80 (330)
T 2hes_X           19 SFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-----------------DS   80 (330)
T ss_dssp             EEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-----------------TS
T ss_pred             eeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-----------------CC
Confidence            6777665 444455545566666 444 333221111112235788999999987766542                 35


Q ss_pred             eEEEEeCCCC-------eEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC-CCcc-eeEEecCCCCCCCc
Q 017317          199 KLLKYDPSLN-------ETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE-SKEQ-TEIFVENLPGGPDN  268 (373)
Q Consensus       199 ~l~~~d~~~~-------~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~-~~~~-~~~~~~~~~g~p~~  268 (373)
                      .|..+|....       +......+ ......++|+|+++.|. +...++.|..+++... .... ...+. .-......
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~la-s~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~  158 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA-TCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKH  158 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEE-EEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEE-EEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEE
Confidence            5666665321       11111222 23346799999998544 4445677888887421 1111 11221 11223456


Q ss_pred             eeECCCCCEEEEEe
Q 017317          269 IKLAPDGSFWIAIL  282 (373)
Q Consensus       269 i~~d~dG~lwva~~  282 (373)
                      +++.++|++.++..
T Consensus       159 v~~~p~~~~l~s~s  172 (330)
T 2hes_X          159 VIWHPSEALLASSS  172 (330)
T ss_dssp             EEECSSSSEEEEEE
T ss_pred             EEECCCCCEEEEEc
Confidence            77888888666544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.52  E-value=0.058  Score=50.00  Aligned_cols=226  Identities=11%  Similarity=-0.021  Sum_probs=121.5

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC---cEEE
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG---VTVL  150 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g---~~~l  150 (373)
                      -.+|++.++|... +|+.+|.|..++ .+++... +........ .+..  ++.+.+ +.....+..++ ...   ...+
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEee--CCCEEEEEeCCCceeEeeecccceeeEEe
Confidence            4678899988766 788999999998 4454322 222223334 5555  455444 45444455555 332   2222


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE-----EEeecCCCCcceEEE
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET-----SILLDSLFFANGVAL  225 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~-----~~~~~~~~~~~gi~~  225 (373)
                      ...     ...+..+.+.++|...++...                 .+.+..++..+++.     ............+++
T Consensus       227 ~~h-----~~~~~~~~~~~~g~~l~s~~~-----------------D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~  284 (420)
T 4gga_A          227 SGH-----SQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW  284 (420)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred             ccc-----ccceeeeeecCCCCeeeeeec-----------------cccceEEeeccccccceeeeeecccCCceeeeee
Confidence            111     124567788889987666432                 35666666654431     111122223456888


Q ss_pred             ccCCCEEEEEe--CCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHH
Q 017317          226 SKDEDYLVVCE--TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLA  303 (373)
Q Consensus       226 ~~dg~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~  303 (373)
                      ++++..++++.  +.++.|..|++.....  ...+.  .......+...++++..++..+..                  
T Consensus       285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~--~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~------------------  342 (420)
T 4gga_A          285 CPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVD--AHSQVCSILWSPHYKELISGHGFA------------------  342 (420)
T ss_dssp             CTTCTTEEEEEECTTTCEEEEEETTTTEE--EEEEE--CSSCEEEEEEETTTTEEEEEECTT------------------
T ss_pred             CCCcccEEEEEeecCCCEEEEEeCCcccc--ceeec--cccceeeeeecCCCCeEEEEEecC------------------
Confidence            88776566543  3456677777653321  11111  122345566778887666554321                  


Q ss_pred             hcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CC-EEEEeeCCCCeEEEeeC
Q 017317          304 AFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DD-HLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       304 ~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~vgs~~~~~i~~~~l  370 (373)
                                    .+.|..+| ++++.+..+....    ..++.+... +| .|.-|+. ...|..-++
T Consensus       343 --------------d~~I~iwd~~~~~~v~~l~gH~----~~V~~l~~spdg~~l~S~s~-D~tvriWdv  393 (420)
T 4gga_A          343 --------------QNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAA-DETLRLWRC  393 (420)
T ss_dssp             --------------TCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEET-TTEEEEECC
T ss_pred             --------------CCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEec-CCeEEEEEC
Confidence                          12355566 5678888776443    347777776 34 3444443 233444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.44  E-value=0.048  Score=54.28  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=26.3

Q ss_pred             EEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCC
Q 017317          320 AVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNT  362 (373)
Q Consensus       320 ~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~  362 (373)
                      .+..+| .+|+.+..+..+.+.....++.  ..+|++|++..++
T Consensus       480 ~l~a~d~~tG~~l~~~~~~~~~~~~p~~~--~~~G~~yva~~~G  521 (668)
T 1kv9_A          480 QMHAYSADKGEALWQFEAQSGIVAAPMTF--ELAGRQYVAIMAG  521 (668)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEEEC
T ss_pred             cchhhhhhcChhheEecCCCCcccCceEE--EECCEEEEEEEec
Confidence            578888 4699998887765532222222  4578888876543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.43  E-value=0.029  Score=49.39  Aligned_cols=183  Identities=12%  Similarity=0.119  Sum_probs=95.4

Q ss_pred             cceEEEec--CCCEE-EEecCCeEEEEE-cCCceE---EeeeecCccccCeEECCC--CcEE-EEECCCcEEEEe-cCC-
Q 017317           79 PEDVCVDR--NGVLY-TATRDGWIKRLH-KNGTWE---NWKLIGGDTLLGITTTQE--NEIL-VCDADKGLLKVT-EEG-  146 (373)
Q Consensus        79 P~~ia~d~--~G~l~-v~~~~g~I~~~~-~~g~~~---~~~~~~~~p~~gl~~d~~--g~L~-va~~~~gl~~~~-~~g-  146 (373)
                      -.++++.+  +|.+. .++.++.|..++ .+++..   .+........ .+++.++  |.++ .+...+.+..++ .++ 
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            45677753  36554 777899999998 344322   2222223445 7888876  6544 455544455566 433 


Q ss_pred             -cEEEeeccCCccccccceeEEcCC-------------CcEEEEeCCccccccccccccccccCCceEEEEeCCCCe---
Q 017317          147 -VTVLASHVNGSRINLADDLIAATD-------------GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---  209 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~d-------------G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---  209 (373)
                       .....  ..+ ....++.+++.|+             ++++++.+.                 .+.|..+|..+++   
T Consensus       135 ~~~~~~--~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~-----------------D~~v~lwd~~~~~~~~  194 (297)
T 2pm7_B          135 TTSPII--IDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQTY  194 (297)
T ss_dssp             CBCCEE--EEC-CSSCEEEEEECCCC------------CCEEEEEET-----------------TSCEEEEEEETTTTEE
T ss_pred             ceeeee--eec-ccCccceEeecCCcccccccCCCCCCcceEEEEcC-----------------CCcEEEEEEcCCCceE
Confidence             21111  011 1124567777776             344444322                 3445555443332   


Q ss_pred             -EEEeecC-CCCcceEEEccCC--CEEEEEeCCCCeEEEEEecCCCCcceeEEe--cCCCCCCCceeECCCCCEEEEEe
Q 017317          210 -TSILLDS-LFFANGVALSKDE--DYLVVCETFKFRCLKYWLKGESKEQTEIFV--ENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       210 -~~~~~~~-~~~~~gi~~~~dg--~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                       ......+ ......++|+|++  ..++++...++.|..+++............  .........++++++|++.++..
T Consensus       195 ~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          195 VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence             1111222 2345789999986  346666666778888887643211111111  11122344577889998666543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.012  Score=60.94  Aligned_cols=150  Identities=8%  Similarity=-0.009  Sum_probs=92.7

Q ss_pred             cceEEEecCCC-EEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEEee-
Q 017317           79 PEDVCVDRNGV-LYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLAS-  152 (373)
Q Consensus        79 P~~ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l~~-  152 (373)
                      -.++++.+ |. |..++.++.|..++ .+++........+... .++++++|+ |+++...+.+..++ +++ ...+.. 
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            46788888 66 66778899999999 4454322222334556 889999996 55566656677777 555 322211 


Q ss_pred             ------ccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC--------
Q 017317          153 ------HVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL--------  217 (373)
Q Consensus       153 ------~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~--------  217 (373)
                            .........+.++++.|++ .+.++.+                 ..+.| .+|..+++........        
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-----------------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~  200 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-----------------EYVTL-TYSLVENEIKQSFIYELPPFAPGG  200 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-----------------SSCEE-EEETTTTEEEEEECCCBCTTCCCS
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEe-----------------CCCcE-EEECCCCceEEEEecccCCcCCCc
Confidence                  0011112357899999964 4444332                 24677 8888777654333221        


Q ss_pred             -----------CCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          218 -----------FFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       218 -----------~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                                 .....++|+|||+.+ ++...++.|..|++..
T Consensus       201 ~~~~~~~~~h~~~V~~v~fspdg~~l-asgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          201 DFSEKTNEKRTPKVIQSLYHPNSLHI-ITIHEDNSLVFWDANS  242 (902)
T ss_dssp             TTCCCTTSCBCCCEEEEEECTTSSEE-EEEETTCCEEEEETTT
T ss_pred             ccccccccccCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCC
Confidence                       235679999999844 4445567788888753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.024  Score=52.68  Aligned_cols=150  Identities=11%  Similarity=0.061  Sum_probs=86.1

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEc----CCceEEeee-------------ecCccccCeE--ECCCCcEE-EEECC
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHK----NGTWENWKL-------------IGGDTLLGIT--TTQENEIL-VCDAD  136 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~----~g~~~~~~~-------------~~~~p~~gl~--~d~~g~L~-va~~~  136 (373)
                      ...++++.+++..+ +++.+|.|..++.    .++......             ...... .+.  +.+++.++ .+...
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            35678888877655 7778899888873    443322111             111122 333  44667654 45555


Q ss_pred             CcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317          137 KGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (373)
Q Consensus       137 ~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  213 (373)
                      +.|..+| .++  ...+...   .....+.+++++++|.+.++.+.                 .|.|..+|..+++....
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILGTT-----------------RGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEEET-----------------TSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEEcC-----------------CCeEEEEEcCCccEEEE
Confidence            5577777 555  3333221   01235789999999987666432                 47788888877665433


Q ss_pred             e--cCCCCcceEEEc----cCCCEEEEEeCCCCeEEEEEecC
Q 017317          214 L--DSLFFANGVALS----KDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       214 ~--~~~~~~~gi~~~----~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      .  ........++++    ++++ ++++...++.|..|++..
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred             EecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence            2  222233566444    4565 555555666788888753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.38  E-value=0.022  Score=51.95  Aligned_cols=137  Identities=12%  Similarity=0.052  Sum_probs=78.6

Q ss_pred             CCeEEEEE-cCCceEEeeeecCccccCeEECC-CCc-EEEEECC------CcEEEEe-cCC-cEEEeeccCCccccccce
Q 017317           96 DGWIKRLH-KNGTWENWKLIGGDTLLGITTTQ-ENE-ILVCDAD------KGLLKVT-EEG-VTVLASHVNGSRINLADD  164 (373)
Q Consensus        96 ~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~-~g~-L~va~~~------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~  164 (373)
                      ...|+.++ ..|+.+.+........ .+.+.+ +|. |+++...      ..|+.++ ..+ .+.+...   .+...+..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCccccc
Confidence            34678888 4555555444334455 678888 665 5444322      2578888 444 4444321   11123566


Q ss_pred             eEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEcc-CCCEEEEEeC-----
Q 017317          165 LIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSK-DEDYLVVCET-----  237 (373)
Q Consensus       165 l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~-----  237 (373)
                      +++.|||+ |+++...             .+...+.|+.+|..+++.+.+... ...+ +++++ ||+.++.+..     
T Consensus       243 ~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             EEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC---
T ss_pred             eEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeC-CCCC-CCccCCCCceEEEecCCccee
Confidence            79999996 6555321             011124599999988876654321 1122 88999 9995555431     


Q ss_pred             ----------CCCeEEEEEecCCC
Q 017317          238 ----------FKFRCLKYWLKGES  251 (373)
Q Consensus       238 ----------~~~~i~~~~~~~~~  251 (373)
                                ....|+++++.+..
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTB
T ss_pred             eccccccccCCCCcEEEEecccCc
Confidence                      34678888876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.015  Score=58.82  Aligned_cols=182  Identities=12%  Similarity=0.132  Sum_probs=99.6

Q ss_pred             CcceEEEecC--CCEE-EEecCCeEEEEE-cCCceEEe---eeecCccccCeEECCC--CcEE-EEECCCcEEEEe-cCC
Q 017317           78 GPEDVCVDRN--GVLY-TATRDGWIKRLH-KNGTWENW---KLIGGDTLLGITTTQE--NEIL-VCDADKGLLKVT-EEG  146 (373)
Q Consensus        78 ~P~~ia~d~~--G~l~-v~~~~g~I~~~~-~~g~~~~~---~~~~~~p~~gl~~d~~--g~L~-va~~~~gl~~~~-~~g  146 (373)
                      ...++++.++  |... +++.+|.|..++ .+++....   ........ .+++.++  |+++ ++...+.+..++ .++
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            3566788765  6554 778899999998 44542222   22233445 8899887  7654 455545566666 433


Q ss_pred             --cEEEeeccCCccccccceeEEcC-------------CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--
Q 017317          147 --VTVLASHVNGSRINLADDLIAAT-------------DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--  209 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~-------------dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--  209 (373)
                        ......  .+ ....+..+++.|             +|.+.++.+.                 .|.|..+|..++.  
T Consensus       134 ~~~~~~~~--~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-----------------dg~I~iwd~~~~~~~  193 (753)
T 3jro_A          134 GTTSPIII--DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-----------------DNLVKIWKYNSDAQT  193 (753)
T ss_dssp             SCCCCEEE--EC-CSSCEEEEEECCCC---------CGGGCCEEEEET-----------------TSCEEEEEEETTTTE
T ss_pred             CCcceeEe--ec-CCCceEEEEecCcccccccccccCCCCCEEEEEEC-----------------CCeEEEEeccCCccc
Confidence              111111  11 112466788887             4654444322                 3566666654332  


Q ss_pred             --EEEeec-CCCCcceEEEccC---CCEEEEEeCCCCeEEEEEecCCCCcceeEEec--CCCCCCCceeECCCCCEEEEE
Q 017317          210 --TSILLD-SLFFANGVALSKD---EDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       210 --~~~~~~-~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~  281 (373)
                        ...... .......++++|+   ++ ++++...++.|..|++.............  ...+....++++++|++.++.
T Consensus       194 ~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          194 YVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             ceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence              111122 2234568999999   66 55555566788889876532111111110  122345667888888754443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.0032  Score=60.91  Aligned_cols=135  Identities=14%  Similarity=0.036  Sum_probs=85.9

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEc-CCce--------EEeeee----cCccccCeEECCCCcEEEEECCCcEEEEe-
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHK-NGTW--------ENWKLI----GGDTLLGITTTQENEILVCDADKGLLKVT-  143 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g~~--------~~~~~~----~~~p~~gl~~d~~g~L~va~~~~gl~~~~-  143 (373)
                      -.++++.|+|++. +|+.+|.|..++. ++..        ..+...    ..... .+++.++| +.++..++.+..++ 
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-EEEEeCCCeEEEEEC
Confidence            5679999977655 7889999999993 3431        232111    13456 89999999 76777777788888 


Q ss_pred             cCC-cE-EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCc
Q 017317          144 EEG-VT-VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFA  220 (373)
Q Consensus       144 ~~g-~~-~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~  220 (373)
                      .++ .. ....-..+ ....+.++++.  |...++.+                  .+.|..+|..+++..... ......
T Consensus       210 ~~~~~~~~~~tL~~~-h~~~V~svaFs--g~~LASa~------------------~~tIkLWd~~~~~~~~~~~gh~~~V  268 (588)
T 2j04_A          210 SASSHQPVSRMIQNA-SRRKITDLKIV--DYKVVLTC------------------PGYVHKIDLKNYSISSLKTGSLENF  268 (588)
T ss_dssp             CSSSSCCCEEEEECC-CSSCCCCEEEE--TTEEEEEC------------------SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred             CCCccccceeeeccc-ccCcEEEEEEE--CCEEEEEe------------------CCeEEEEECCCCeEEEEEcCCCceE
Confidence            444 32 11110011 11357788887  45544433                  268999998877775544 334456


Q ss_pred             ceEEE--ccCCCEEEEEe
Q 017317          221 NGVAL--SKDEDYLVVCE  236 (373)
Q Consensus       221 ~gi~~--~~dg~~l~v~~  236 (373)
                      .++++  ++|+..+.++.
T Consensus       269 ~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          269 HIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CEEEETTCSSCEEEEECS
T ss_pred             EEEEeeeCCCCCEEEEEc
Confidence            78999  99997555554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.35  E-value=0.023  Score=56.68  Aligned_cols=111  Identities=13%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecC-----------c-cccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEe
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGG-----------D-TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-----------~-p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~  151 (373)
                      +|.||+++.++.|+.+| .+|+..-......           . .. +++++ ++++|++.....|+.+| .+| ...-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEE-CCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            79999999999999999 6776432211110           0 12 45664 67899998767799999 788 43322


Q ss_pred             eccCCc-cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          152 SHVNGS-RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       152 ~~~~~~-~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ...... .........+. +|.+|++.....+            ...|.|+.+|..+++...
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-KGKVIIGNGGAEY------------GVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             ccCCCCCcceecCCCEEE-CCEEEEeCCCCCc------------CCCCEEEEEECCCCcEEE
Confidence            211100 01111111222 6789987643111            124789999988887653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.32  E-value=0.0081  Score=60.59  Aligned_cols=131  Identities=6%  Similarity=-0.060  Sum_probs=75.9

Q ss_pred             eEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecC-ccc----cCeEECCCCcE-EEEECC---------CcEEEEe-
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGG-DTL----LGITTTQENEI-LVCDAD---------KGLLKVT-  143 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~-~p~----~gl~~d~~g~L-~va~~~---------~gl~~~~-  143 (373)
                      ++...++|.+++.. +|.|+.++ .+|+.+.+..... ...    .++.+++||+. .++...         ..++.++ 
T Consensus        21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            56777888766554 88999999 4555444322111 111    02677999974 333221         2345677 


Q ss_pred             cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CC---
Q 017317          144 EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SL---  217 (373)
Q Consensus       144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~---  217 (373)
                      .+| .+.+... .    ......++.|||+ |.++.                   .+.|+.++..+++...+.. +.   
T Consensus       100 ~~~~~~~l~~~-~----~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~~~~  155 (740)
T 4a5s_A          100 NKRQLITEERI-P----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKEDI  155 (740)
T ss_dssp             TTTEECCSSCC-C----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             CCCcEEEcccC-C----CcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCCccc
Confidence            556 4333211 1    1355778999995 55442                   2478888877766554321 11   


Q ss_pred             ---------------CCcceEEEccCCCEEEEEe
Q 017317          218 ---------------FFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       218 ---------------~~~~gi~~~~dg~~l~v~~  236 (373)
                                     ....+++|||||+.|.+..
T Consensus       156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                           1223588999999887763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.32  E-value=0.075  Score=46.83  Aligned_cols=113  Identities=12%  Similarity=-0.036  Sum_probs=66.1

Q ss_pred             ccccCeEECCCCcEEE-EECCCcEEEEe-cCC---cEEEeeccCCccccccceeEEcC--CCcEEEEeCCcccccccccc
Q 017317          117 DTLLGITTTQENEILV-CDADKGLLKVT-EEG---VTVLASHVNGSRINLADDLIAAT--DGSIYFSVASTKFGLHNWGL  189 (373)
Q Consensus       117 ~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g---~~~l~~~~~~~~~~~~~~l~~~~--dG~l~v~~~~~~~~~~~~~~  189 (373)
                      ... .++++++|++++ +...+.+..++ .++   .+.+.. ..+ ....+.++++.+  ||.+.++.+.          
T Consensus        13 ~v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~d~~~l~s~~~----------   79 (351)
T 3f3f_A           13 LVH-DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS-WRA-HDSSIVAIDWASPEYGRIIASASY----------   79 (351)
T ss_dssp             CEE-EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEE-EEC-CSSCEEEEEECCGGGCSEEEEEET----------
T ss_pred             cee-EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecce-ecc-CCCcEEEEEEcCCCCCCEEEEEcC----------
Confidence            345 889999997554 44444466666 433   233221 111 123577889988  5876666432          


Q ss_pred             ccccccCCceEEEEeCCCCe----------EEEeecCCCCcceEEEccC--CCEEEEEeCCCCeEEEEEecCC
Q 017317          190 DLLEAKPHGKLLKYDPSLNE----------TSILLDSLFFANGVALSKD--EDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       190 ~~~~~~~~g~l~~~d~~~~~----------~~~~~~~~~~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~~~  250 (373)
                             .+.|..+|..+++          ...+.........++++++  ++.++.+ ..++.|..|++...
T Consensus        80 -------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           80 -------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL-GNDGILRLYDALEP  144 (351)
T ss_dssp             -------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE-ETTCEEEEEECSST
T ss_pred             -------CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe-cCCCcEEEecCCCh
Confidence                   3566666655442          2222222344578999999  8855554 45678999987644

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.30  E-value=0.041  Score=55.06  Aligned_cols=104  Identities=10%  Similarity=-0.026  Sum_probs=60.8

Q ss_pred             cceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC-
Q 017317          162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK-  239 (373)
Q Consensus       162 ~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-  239 (373)
                      ..++++.|||+ |.++...             .+.....|+.+|.++++............+++|+|||+.++++.... 
T Consensus       127 ~~~~~~SPDg~~la~~~~~-------------~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc
Confidence            45788999996 4444221             01112379999998887654221111246799999999898876432 


Q ss_pred             --------------CeEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCCEE
Q 017317          240 --------------FRCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       240 --------------~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~lw  278 (373)
                                    ..|+++++.+.......++... .+....++.+++||+..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEE
Confidence                          3488888755432222222211 12233467889999743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.30  E-value=0.11  Score=48.29  Aligned_cols=145  Identities=13%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeecc
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHV  154 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~  154 (373)
                      ..+++++ +..|++++.+|.|..++ .+++... +........ .++++ ++.++.+...+.+..++ .++ ........
T Consensus       176 v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          176 VLCLQYD-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             EEEEECC-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             EEEEEEC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence            3445553 34455788899999999 4554332 222233344 77775 34666666666677777 544 21111111


Q ss_pred             CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEE
Q 017317          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLV  233 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~  233 (373)
                      .+. ...+..+.+  +|...++.+                 ..+.|..+|..+++....... ......+++  +++ ++
T Consensus       253 ~~~-~~~v~~~~~--~~~~l~s~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l  309 (435)
T 1p22_A          253 VGH-RAAVNVVDF--DDKYIVSAS-----------------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDR-LV  309 (435)
T ss_dssp             CCC-SSCEEEEEE--ETTEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETT-EE
T ss_pred             cCC-CCcEEEEEe--CCCEEEEEe-----------------CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCC-EE
Confidence            111 123556666  555444432                 247888999887765443332 222334555  556 44


Q ss_pred             EEeCCCCeEEEEEecC
Q 017317          234 VCETFKFRCLKYWLKG  249 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~  249 (373)
                      ++...++.|..|++..
T Consensus       310 ~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          310 VSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             EEEETTSCEEEEETTT
T ss_pred             EEEeCCCeEEEEECCC
Confidence            4445567899998754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.30  E-value=0.12  Score=50.61  Aligned_cols=111  Identities=16%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             CCCEEEEec-CCeEEEEEc--CCceEEeeeecC------------ccccCeEEC-CCCc----EEEEECCCcEEEEe-cC
Q 017317           87 NGVLYTATR-DGWIKRLHK--NGTWENWKLIGG------------DTLLGITTT-QENE----ILVCDADKGLLKVT-EE  145 (373)
Q Consensus        87 ~G~l~v~~~-~g~I~~~~~--~g~~~~~~~~~~------------~p~~gl~~d-~~g~----L~va~~~~gl~~~~-~~  145 (373)
                      +|.||+++. ++.|+.+|.  +|+..-......            ... ++++. .++.    ||+++....|+.+| .+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccccccc-ceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            789999998 899999996  676432211111            113 56763 2566    99998767799999 78


Q ss_pred             C-cEEEeeccCCcc-c-cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          146 G-VTVLASHVNGSR-I-NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       146 g-~~~l~~~~~~~~-~-~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      | ...-.. ..... . .....-.+. +|.+|++....++            ...|.|+.+|.++++...
T Consensus       141 G~~~W~~~-~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          141 GETVWKVE-NSDIKVGSTLTIAPYVV-KDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQVW  196 (599)
T ss_dssp             CCEEEEEE-CCCGGGTCBCCSCCEEE-TTEEEECCBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred             CCEEEeec-CCCCCccceeecCCEEE-CCEEEEEeccccc------------CCCCeEEEEECCCCcEEE
Confidence            8 432221 11100 0 011111222 6789887643111            124789999988887543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.26  E-value=0.1  Score=47.20  Aligned_cols=223  Identities=10%  Similarity=0.004  Sum_probs=114.2

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEcC-CceEEeeeecCccccCeEECCCCcEE-EE-ECCCcEEEEe-cCC--cEEE
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHKN-GTWENWKLIGGDTLLGITTTQENEIL-VC-DADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~~-g~~~~~~~~~~~p~~gl~~d~~g~L~-va-~~~~gl~~~~-~~g--~~~l  150 (373)
                      ..-.++++.++|.+++...+.++..++.+ ++.. ......... .+.+..++++. ++ ...+.+..+| .++  ...+
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~   97 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHI-MSQEMRHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI   97 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEE-EEEECSCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCccee-eeeecCCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE
Confidence            34578999999998854444567777733 2222 111112222 44555555544 33 3233566677 566  2222


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC-eE-EEeecCCCCcce-EEEcc
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ET-SILLDSLFFANG-VALSK  227 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~-~~~~~~~~~~~g-i~~~~  227 (373)
                      .  ..    ..+.++.+.+++.+ ++.                   .+.+..+|..++ +. ..+..    +.+ .++++
T Consensus        98 ~--~~----~~v~~v~~~~~~~~-~~~-------------------~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~  147 (355)
T 3vu4_A           98 K--VD----APVKDLFLSREFIV-VSY-------------------GDVISVFKFGNPWKRITDDIR----FGGVCEFSN  147 (355)
T ss_dssp             E--CS----SCEEEEEECSSEEE-EEE-------------------TTEEEEEESSTTCCBSSCCEE----EEEEEEEET
T ss_pred             E--CC----CceEEEEEcCCEEE-EEE-------------------cCEEEEEECCCCceeeEEecc----CCceEEEEc
Confidence            1  11    24567777766433 332                   146777776654 21 11111    333 34555


Q ss_pred             CCCEEEEE-eCCCCeEEEEEecCCCCc-------------c-eeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhc
Q 017317          228 DEDYLVVC-ETFKFRCLKYWLKGESKE-------------Q-TEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFV  292 (373)
Q Consensus       228 dg~~l~v~-~~~~~~i~~~~~~~~~~~-------------~-~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~  292 (373)
                        +.+.++ ....+.|..+++......             . ...+. .-.+....++++++|++.++....        
T Consensus       148 --~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d--------  216 (355)
T 3vu4_A          148 --GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQD--------  216 (355)
T ss_dssp             --TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred             --cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCC--------
Confidence              445555 456677888887643200             0 11221 112345668899999877665432        


Q ss_pred             cCChHHHHHHHhcchhhhhccCCCccEE-EEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-CE-EEEeeCCCCeEEEe
Q 017317          293 HTSKATKHLLAAFPKLIKLVAPLHKKAA-VVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-DH-LYLGSLNTNFIGKL  368 (373)
Q Consensus       293 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~-v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g~-L~vgs~~~~~i~~~  368 (373)
                                                +. +..+| .+++.+..+..  |.+...+..+.+.. ++ |..++ ....|...
T Consensus       217 --------------------------~~~v~iwd~~~~~~~~~~~~--g~h~~~v~~~~~s~~~~~l~s~s-~d~~v~iw  267 (355)
T 3vu4_A          217 --------------------------GTIIRVFKTEDGVLVREFRR--GLDRADVVDMKWSTDGSKLAVVS-DKWTLHVF  267 (355)
T ss_dssp             --------------------------CSEEEEEETTTCCEEEEEEC--TTCCSCEEEEEECTTSCEEEEEE-TTCEEEEE
T ss_pred             --------------------------CCEEEEEECCCCcEEEEEEc--CCCCCcEEEEEECCCCCEEEEEE-CCCEEEEE
Confidence                                      22 44555 35777777752  11123567777663 43 44444 34456666


Q ss_pred             eCC
Q 017317          369 PLK  371 (373)
Q Consensus       369 ~l~  371 (373)
                      ++.
T Consensus       268 ~~~  270 (355)
T 3vu4_A          268 EIF  270 (355)
T ss_dssp             ESS
T ss_pred             Ecc
Confidence            654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.23  E-value=0.048  Score=48.48  Aligned_cols=183  Identities=11%  Similarity=0.041  Sum_probs=93.5

Q ss_pred             CcceEEEec--CC-CEEEEecCCeEEEEE-cCCceE---EeeeecCccccCeEECCC--CcEEE-EECCCcEEEEe-cCC
Q 017317           78 GPEDVCVDR--NG-VLYTATRDGWIKRLH-KNGTWE---NWKLIGGDTLLGITTTQE--NEILV-CDADKGLLKVT-EEG  146 (373)
Q Consensus        78 ~P~~ia~d~--~G-~l~v~~~~g~I~~~~-~~g~~~---~~~~~~~~p~~gl~~d~~--g~L~v-a~~~~gl~~~~-~~g  146 (373)
                      .-.++++.+  +| .|..++.++.|..++ .+++..   .+........ ++++.++  |.+++ +...+.+..++ ..+
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            345677753  34 455788899999998 444322   2222233455 8899876  65444 44444455566 333


Q ss_pred             -cEEEeeccCCccccccceeEEcCCC-----------------cEEEEeCCccccccccccccccccCCceEEEEeCCCC
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDG-----------------SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG-----------------~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  208 (373)
                       .........+ ....++.+++.|++                 .++++.                 ...+.|..+|..+.
T Consensus       138 ~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-----------------s~D~~v~lWd~~~~  199 (316)
T 3bg1_A          138 GQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-----------------GCDNLIKLWKEEED  199 (316)
T ss_dssp             SCEEECCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-----------------BTTSBCCEEEECTT
T ss_pred             CCcceeeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEe-----------------cCCCeEEEEEeCCC
Confidence             2111111111 11245667777763                 233322                 12344444444322


Q ss_pred             -eEEE--eecC-CCCcceEEEccCC----CEEEEEeCCCCeEEEEEecCCCCcc--eeEEecCCCCCCCceeECCCCCEE
Q 017317          209 -ETSI--LLDS-LFFANGVALSKDE----DYLVVCETFKFRCLKYWLKGESKEQ--TEIFVENLPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       209 -~~~~--~~~~-~~~~~gi~~~~dg----~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~g~p~~i~~d~dG~lw  278 (373)
                       +...  ...+ ......++|+|++    + ++++...++.|..+++.......  ...+. ...+....+++.++|++.
T Consensus       200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~l  277 (316)
T 3bg1_A          200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANIL  277 (316)
T ss_dssp             SCEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCE
T ss_pred             CccceeeecccCCCceEEEEecCCCCCCCc-eEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEE
Confidence             2221  1222 2234678999986    4 56666667788888875421111  11111 122344567888888765


Q ss_pred             EEE
Q 017317          279 IAI  281 (373)
Q Consensus       279 va~  281 (373)
                      ++.
T Consensus       278 as~  280 (316)
T 3bg1_A          278 AVS  280 (316)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.23  E-value=0.13  Score=47.73  Aligned_cols=210  Identities=13%  Similarity=0.094  Sum_probs=110.1

Q ss_pred             cCCC-EEEEecCCeEEEEE-cCCceEEeee-ecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC--cEEEeeccCCcc
Q 017317           86 RNGV-LYTATRDGWIKRLH-KNGTWENWKL-IGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG--VTVLASHVNGSR  158 (373)
Q Consensus        86 ~~G~-l~v~~~~g~I~~~~-~~g~~~~~~~-~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~  158 (373)
                      .+|. +.+|+.+|.|..++ .+++...... ..+... .+.+  +++ |+++...+.+..++ .++  ...+...     
T Consensus       141 ~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-----  212 (435)
T 1p22_A          141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH-----  212 (435)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC-----
T ss_pred             ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC-----
Confidence            3444 55788999999999 4554433222 223344 6776  454 55566555677777 666  3333211     


Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE---EeecC-CCCcceEEEccCCCEEEE
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS---ILLDS-LFFANGVALSKDEDYLVV  234 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~---~~~~~-~~~~~gi~~~~dg~~l~v  234 (373)
                      ...+.++++++ +.++.+..                  .+.|..+|..+++..   ....+ ......+++  +++.++.
T Consensus       213 ~~~v~~l~~~~-~~l~s~s~------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s  271 (435)
T 1p22_A          213 CEAVLHLRFNN-GMMVTCSK------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS  271 (435)
T ss_dssp             CSCEEEEECCT-TEEEEEET------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred             CCcEEEEEEcC-CEEEEeeC------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence            12355666642 33333332                  367777887655422   11221 222344555  6775555


Q ss_pred             EeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEE-EecCCCchhhhccCChHHHHHHHhcchhhhhcc
Q 017317          235 CETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA-ILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVA  313 (373)
Q Consensus       235 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  313 (373)
                      + ..++.|..|++.....  ...+. ........+..  +|++.++ ...+                             
T Consensus       272 ~-~~dg~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~--~~~~l~~g~~dg-----------------------------  316 (435)
T 1p22_A          272 A-SGDRTIKVWNTSTCEF--VRTLN-GHKRGIACLQY--RDRLVVSGSSDN-----------------------------  316 (435)
T ss_dssp             E-ETTSEEEEEETTTCCE--EEEEE-CCSSCEEEEEE--ETTEEEEEETTS-----------------------------
T ss_pred             E-eCCCeEEEEECCcCcE--EEEEc-CCCCcEEEEEe--CCCEEEEEeCCC-----------------------------
Confidence            5 4567888888754321  12222 11122233444  4554444 3333                             


Q ss_pred             CCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeC
Q 017317          314 PLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       314 ~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l  370 (373)
                            .+..+| .+++.+..+....    ..+..+..++..|..|+..+ .|..+++
T Consensus       317 ------~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~l~sg~~dg-~i~vwd~  363 (435)
T 1p22_A          317 ------TIRLWDIECGACLRVLEGHE----ELVRCIRFDNKRIVSGAYDG-KIKVWDL  363 (435)
T ss_dssp             ------CEEEEETTTCCEEEEECCCS----SCEEEEECCSSEEEEEETTS-CEEEEEH
T ss_pred             ------eEEEEECCCCCEEEEEeCCc----CcEEEEEecCCEEEEEeCCC-cEEEEEC
Confidence                  356666 3477777775433    34666666556777777544 4666554

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.15  E-value=0.007  Score=58.92  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             cccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEEEE
Q 017317          158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~  235 (373)
                      .+..|..|+++++|+|||++.+.....     .....-.+..++.+++.+++...++..  .....|++|+||+++|||.
T Consensus       474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~-----~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNA-----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCS-----GGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CccCCcceEECCCCCEEEEecCCCccc-----ccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            466788999999999999865321100     011112345789999998988877654  3445799999999988876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.08  E-value=0.13  Score=44.93  Aligned_cols=229  Identities=11%  Similarity=-0.028  Sum_probs=116.2

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcEEEEECCCcEEE-Ee-cCC-cEEEee
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLK-VT-EEG-VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~-~~-~~g-~~~l~~  152 (373)
                      -.++++.++|+.. +|+.+|.|..++ .+++....... ..... .+.  .++.+.++....+..+ ++ ..+ ......
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~-~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~  146 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATL  146 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEE--EETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE-Eee--cCCCEEEEEecCCceEeeecCCCceeEEEE
Confidence            4578899988766 678899999998 45543322221 12222 333  3455444333344444 44 333 221111


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE-----EeecCCCCcceEEEcc
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS-----ILLDSLFFANGVALSK  227 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~-----~~~~~~~~~~gi~~~~  227 (373)
                      .  + .......+.+.++|+..++...                 .+.|..+|..+++..     ...........+++.+
T Consensus       147 ~--~-~~~~~~~~~~~~~~~~l~s~~~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~  206 (318)
T 4ggc_A          147 S--G-HSQEVCGLRWAPDGRHLASGGN-----------------DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP  206 (318)
T ss_dssp             E--C-CSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECT
T ss_pred             c--C-ccCceEEEEEcCCCCEEEEEec-----------------CcceeEEECCCCcccccceeeecccCCceEEEEecC
Confidence            1  1 1124567788888877666432                 366777776654321     1111112234567777


Q ss_pred             CCCEEEE-Ee-CCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhc
Q 017317          228 DEDYLVV-CE-TFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAF  305 (373)
Q Consensus       228 dg~~l~v-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~  305 (373)
                      ++..++. +. .....|..++......  .....  .......+++.+++...++..+..                    
T Consensus       207 ~~~~~~~~~~~~~~~~i~lwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~--------------------  262 (318)
T 4ggc_A          207 WQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVD--AHSQVCSILWSPHYKELISGHGFA--------------------  262 (318)
T ss_dssp             TSTTEEEEEECTTTCEEEEEETTTCCE--EEEEE--CSSCEEEEEEETTTTEEEEEECTT--------------------
T ss_pred             CCCcEEEEEecCCCCEEEEEecccccc--ccccc--ceeeeeeeeecccccceEEEEEcC--------------------
Confidence            6654543 33 3334555555433221  11111  112234456677776555433211                    


Q ss_pred             chhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CC-EEEEeeCCCCeEEEeeCC
Q 017317          306 PKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DD-HLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       306 ~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~vgs~~~~~i~~~~l~  371 (373)
                                  .+.+..+| .+++.+..+....    ..++.+.+. ++ .|.-|+. ...|..-++.
T Consensus       263 ------------d~~i~iwd~~~~~~~~~l~gH~----~~V~~l~~spdg~~l~S~s~-D~~v~iWd~~  314 (318)
T 4ggc_A          263 ------------QNQLVIWKYPTMAKVAELKGHT----SRVLSLTMSPDGATVASAAA-DETLRLWRCF  314 (318)
T ss_dssp             ------------TCCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSCEEEEET-TTEEEEECCS
T ss_pred             ------------CCEEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEec-CCeEEEEECC
Confidence                        12356666 5688888886543    357888876 34 4544443 3346555553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.07  E-value=0.034  Score=50.43  Aligned_cols=134  Identities=14%  Similarity=0.069  Sum_probs=76.1

Q ss_pred             EecCCeEEEEE-cCCc-----------------eEEeeeecCccccCeEECCCCcEEEE-ECCCc-EEEEe-cCC--cEE
Q 017317           93 ATRDGWIKRLH-KNGT-----------------WENWKLIGGDTLLGITTTQENEILVC-DADKG-LLKVT-EEG--VTV  149 (373)
Q Consensus        93 ~~~~g~I~~~~-~~g~-----------------~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~g-l~~~~-~~g--~~~  149 (373)
                      |..+|.|..++ .+++                 ...+....+... .++++++|++.++ ...+. +..+| .++  ...
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            35677888887 3332                 223332334456 8999999986655 44444 66677 666  333


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe---EEEeec-----------
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLD-----------  215 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~-----------  215 (373)
                      +..   +.....+.+++++|+|.+.++.+.                 .+.|..+|.....   ...+..           
T Consensus       234 ~~~---g~h~~~v~~~~~s~~~~~l~s~s~-----------------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (355)
T 3vu4_A          234 FRR---GLDRADVVDMKWSTDGSKLAVVSD-----------------KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW  293 (355)
T ss_dssp             EEC---TTCCSCEEEEEECTTSCEEEEEET-----------------TCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred             EEc---CCCCCcEEEEEECCCCCEEEEEEC-----------------CCEEEEEEccCCCCcccccccceeecccccccc
Confidence            321   111235789999999987776543                 3566666654321   111000           


Q ss_pred             ---------C-CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          216 ---------S-LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       216 ---------~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                               . ......+++++|++.+++. ..++.+..|++.
T Consensus       294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~-~~dg~~~~~~~~  335 (355)
T 3vu4_A          294 SLCNFKLSVDKHVRGCKIAWISESSLVVVW-PHTRMIETFKVV  335 (355)
T ss_dssp             CSEEEECCCCTTCCCCEEEESSSSEEEEEE-TTTTEEEEEEEE
T ss_pred             ceeEEEeccCCCCCceEEEEeCCCCEEEEE-eCCCeEEEEEEE
Confidence                     0 0011457899999855555 456778888764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.05  E-value=0.054  Score=48.42  Aligned_cols=100  Identities=18%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             cceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC--
Q 017317          162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF--  238 (373)
Q Consensus       162 ~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--  238 (373)
                      ...+.+.|||+ |+++...             .......||.++.++++...+..... ...++|+|||+.|+++...  
T Consensus        61 ~~~~~~SpDg~~la~~~~~-------------~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~  126 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRAN-------------EEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRR  126 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEE-------------TTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCC
T ss_pred             CCCeEECCCCCEEEEEEec-------------cCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCC
Confidence            45779999995 5554321             00122469999988887665543333 6789999999988887532  


Q ss_pred             ------------------------CCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          239 ------------------------KFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       239 ------------------------~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                                              ...|+++++.+...  ...+..  + ....++.++|| +.++.
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~--~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          127 EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK--P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             C---------CCCC---------CEEEEEEEETTTTEE--EEEEEE--E-TTCEEEEETTE-EEEEE
T ss_pred             CcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC--C-CcccccCCCCe-EEEEE
Confidence                                    24678888755322  022222  2 45677888999 65554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.01  E-value=0.0083  Score=57.66  Aligned_cols=124  Identities=15%  Similarity=0.243  Sum_probs=77.1

Q ss_pred             ccccccceeEEcC-CCcEEEEeCCccc-ccc---ccccccccccCCceEEEEeCCCC-------eEEEee-c--------
Q 017317          157 SRINLADDLIAAT-DGSIYFSVASTKF-GLH---NWGLDLLEAKPHGKLLKYDPSLN-------ETSILL-D--------  215 (373)
Q Consensus       157 ~~~~~~~~l~~~~-dG~l~v~~~~~~~-~~~---~~~~~~~~~~~~g~l~~~d~~~~-------~~~~~~-~--------  215 (373)
                      .++..|.+++++| +|.+|++-++..- +..   ............|.|+++..+.+       +++.++ .        
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            4566789999998 6899999654211 100   01111222345689999975432       123321 0        


Q ss_pred             -------------CCCCcceEEEccCCCEEEE-EeCC-----------CCeEEEEEecCCCCcceeEEecCC-CCCCCce
Q 017317          216 -------------SLFFANGVALSKDEDYLVV-CETF-----------KFRCLKYWLKGESKEQTEIFVENL-PGGPDNI  269 (373)
Q Consensus       216 -------------~~~~~~gi~~~~dg~~l~v-~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i  269 (373)
                                   .+..|+.++++++|+ ||+ ++..           ++.+++++..   .+....+.... ...|.|+
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~---tGel~~fl~~P~~aEpnGi  536 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPA---TGEIRRFMVGPIGCEVTGI  536 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTT---TCCEEEEEECCTTCEEEEE
T ss_pred             ccccCccCccccCccCCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCC---CCeEEEEEeCCCCccccCC
Confidence                         256789999999998 999 5432           3478887643   34455555322 2358999


Q ss_pred             eECCCCC-EEEEEecC
Q 017317          270 KLAPDGS-FWIAILQL  284 (373)
Q Consensus       270 ~~d~dG~-lwva~~~~  284 (373)
                      ++++|++ |||+....
T Consensus       537 afSPD~ktLfV~vQHP  552 (592)
T 4a9v_A          537 SFSPDQKTLFVGIQHP  552 (592)
T ss_dssp             EECTTSSEEEEEEEST
T ss_pred             EECCCCCEEEEEEeCC
Confidence            9999995 88887654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.01  E-value=0.21  Score=46.10  Aligned_cols=142  Identities=13%  Similarity=0.007  Sum_probs=83.0

Q ss_pred             eEEEecCCCEEEEecCCeEEEEE-cCCceEEeeee--c-CccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEEee
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI--G-GDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~--~-~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l~~  152 (373)
                      .|+..+++.|-+|. ++.|+.++ .+|+.......  . .... ++++.++|++++ +...+.+..++ .++  +..+. 
T Consensus       110 ~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~-sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-  186 (420)
T 4gga_A          110 LVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-  186 (420)
T ss_dssp             CEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred             eEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE-EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-
Confidence            46666655444654 78999999 66765543322  2 2345 899999997554 55555577777 666  22221 


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEeecCCCCcceEEEccCCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGVALSKDED  230 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~~gi~~~~dg~  230 (373)
                         +.. ..+..+  ..++.+.++.+                 ..+.+..+|.....  ...+........++.++++++
T Consensus       187 ---~h~-~~v~~~--s~~~~~l~sgs-----------------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~  243 (420)
T 4gga_A          187 ---SHS-ARVGSL--SWNSYILSSGS-----------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR  243 (420)
T ss_dssp             ---CCS-SCEEEE--EEETTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             ---CCC-CceEEE--eeCCCEEEEEe-----------------CCCceeEeeecccceeeEEecccccceeeeeecCCCC
Confidence               111 123333  44566655543                 24667777755432  223333344567889999998


Q ss_pred             EEEEEeCCCCeEEEEEecC
Q 017317          231 YLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~  249 (373)
                      .+... ..++.+..++...
T Consensus       244 ~l~s~-~~D~~v~i~~~~~  261 (420)
T 4gga_A          244 HLASG-GNDNLVNVWPSAP  261 (420)
T ss_dssp             EEEEE-ETTSCEEEEESSC
T ss_pred             eeeee-eccccceEEeecc
Confidence            55444 4566788887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.94  E-value=0.2  Score=48.91  Aligned_cols=112  Identities=16%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeecCc----------cccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeec
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIGGD----------TLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASH  153 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~----------p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~  153 (373)
                      +|.||+++..++|+.+| .+|+..-.......          .. +++++ ++++|+++....|+.+| .+| ...-...
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~-~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEE-CCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            79999998766799999 57764322111111          13 55653 67899998777899999 788 4332221


Q ss_pred             cC---CccccccceeEEc-CCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          154 VN---GSRINLADDLIAA-TDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       154 ~~---~~~~~~~~~l~~~-~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ..   +......-.+.-+ .+|  .+|++....+            ....+.|+.+|..+++...
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e------------~~~~g~v~alD~~tG~~~W  198 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE------------FGVVGRLFARDPDTGEEIW  198 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG------------GCCBCEEEEECTTTCCEEE
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccc------------cCCCCEEEEEECCCCCEEe
Confidence            11   0011111112211 123  6777653211            1124788999988877543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.89  E-value=0.2  Score=43.88  Aligned_cols=176  Identities=15%  Similarity=0.112  Sum_probs=96.2

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEEcCC---c-eEEeeeecCccccCeEECC--CCcEEE-EECCCcEEEEe-cCC-c
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLHKNG---T-WENWKLIGGDTLLGITTTQ--ENEILV-CDADKGLLKVT-EEG-V  147 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~~~g---~-~~~~~~~~~~p~~gl~~d~--~g~L~v-a~~~~gl~~~~-~~g-~  147 (373)
                      .-.+++++++|+.. ++..++.|..++.++   + ...+....+... .+++.+  +|++++ +...+.+..++ .++ .
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~   89 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGRW   89 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence            34678899988766 677899999998432   2 222322233445 788864  366554 45545566666 554 2


Q ss_pred             EEEeeccCCccccccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeCCCCe---EEEeecCCCCcce
Q 017317          148 TVLASHVNGSRINLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE---TSILLDSLFFANG  222 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~---~~~~~~~~~~~~g  222 (373)
                      ..+.. ..+ ....++++++.|+  |.+.++.+.                 .+.|..+|..++.   ...+.......+.
T Consensus        90 ~~~~~-~~~-h~~~v~~v~~~p~~~g~~l~s~s~-----------------d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           90 SQIAV-HAV-HSASVNSVQWAPHEYGPMLLVASS-----------------DGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             CCCEE-ECC-CSSCEEEEEECCGGGCSEEEEEET-----------------TSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             EEEEE-eec-CCCceeEEEeCcCCCCcEEEEEEC-----------------CCcEEEEEecCCCceeeeeeecccCccce
Confidence            22211 111 1235778999887  766555432                 3667777765432   1222222233466


Q ss_pred             EEEccC-------------CCEEEEEeCCCCeEEEEEecCCCCcc-e-eEEecCCCCCCCceeECCCC
Q 017317          223 VALSKD-------------EDYLVVCETFKFRCLKYWLKGESKEQ-T-EIFVENLPGGPDNIKLAPDG  275 (373)
Q Consensus       223 i~~~~d-------------g~~l~v~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~g~p~~i~~d~dG  275 (373)
                      ++|+|+             ++ ++++...++.|..+++....... . ..+. .-......+++++++
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTV  216 (297)
T ss_dssp             EEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCC
T ss_pred             EeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCC
Confidence            788886             34 55555566778888876432111 1 1111 112234567788875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.87  E-value=0.15  Score=50.72  Aligned_cols=108  Identities=18%  Similarity=0.058  Sum_probs=61.5

Q ss_pred             ccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc--ceEEEccCCCEEEEEeC
Q 017317          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA--NGVALSKDEDYLVVCET  237 (373)
Q Consensus       161 ~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~  237 (373)
                      ...++++.|||+ |.++...             .+.....|+.+|.++++... ...+...  .+++|++||+.++.+..
T Consensus       122 ~~~~~~~SPDG~~la~~~~~-------------~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~  187 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKP-------------NAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWL  187 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEE-------------TTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEECC-------------CCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEe
Confidence            356788999996 4333211             11223579999998877530 1112222  68999999998888764


Q ss_pred             C------------CCeEEEEEecCCCCcceeEEecC-CCCCCCceeECCCCC-EEEEEe
Q 017317          238 F------------KFRCLKYWLKGESKEQTEIFVEN-LPGGPDNIKLAPDGS-FWIAIL  282 (373)
Q Consensus       238 ~------------~~~i~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~dG~-lwva~~  282 (373)
                      .            ...|+++++.+.......++... .+....++.+++||+ |.++..
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  246 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYIL  246 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEe
Confidence            2            23488888765432222222211 112233577899996 444443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.022  Score=54.96  Aligned_cols=176  Identities=9%  Similarity=-0.058  Sum_probs=100.2

Q ss_pred             cceEEEecC------CCEE-EEecCCeEEEEEc-CCceE------------EeeeecCccccCeEECCCCcEEEEECCCc
Q 017317           79 PEDVCVDRN------GVLY-TATRDGWIKRLHK-NGTWE------------NWKLIGGDTLLGITTTQENEILVCDADKG  138 (373)
Q Consensus        79 P~~ia~d~~------G~l~-v~~~~g~I~~~~~-~g~~~------------~~~~~~~~p~~gl~~d~~g~L~va~~~~g  138 (373)
                      ..++++.|+      +.+. .++.+|.|..++. .+...            .+........ ++++.+++.|..+...+.
T Consensus       210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs~Dgt  288 (524)
T 2j04_B          210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGFKNGF  288 (524)
T ss_dssp             EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEETTSE
T ss_pred             EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEeCCCE
Confidence            456777764      3454 5778899988883 33211            1111123345 788877777777776566


Q ss_pred             EEEEe-cCC-c--EEEeeccCCcccccccee--EEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          139 LLKVT-EEG-V--TVLASHVNGSRINLADDL--IAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       139 l~~~~-~~g-~--~~l~~~~~~~~~~~~~~l--~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                      |..+| .++ .  ..+...     ...+.+|  ++.++| .+.++.+.                 .+.|..+|..+++..
T Consensus       289 V~lWD~~~~~~~~~~~~~H-----~~~V~sv~~~~s~~g~~~laS~S~-----------------D~tvklWD~~~~~~~  346 (524)
T 2j04_B          289 VAEFDLTDPEVPSFYDQVH-----DSYILSVSTAYSDFEDTVVSTVAV-----------------DGYFYIFNPKDIATT  346 (524)
T ss_dssp             EEEEETTBCSSCSEEEECS-----SSCEEEEEEECCTTSCCEEEEEET-----------------TSEEEEECGGGHHHH
T ss_pred             EEEEECCCCCCceEEeecc-----cccEEEEEEEcCCCCCeEEEEecc-----------------CCeEEEEECCCCCcc
Confidence            66777 544 2  222111     1246777  456777 77776543                 467777886544321


Q ss_pred             -EeecCC--CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          212 -ILLDSL--FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       212 -~~~~~~--~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                       .+....  .....++|+|+++ .+++....+.|..+++.....  ...+.. -.+....+++.++|.+.++.
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~--~~~l~g-H~~~V~sva~Sp~g~~l~Sg  415 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFA--VHPLVS-RETTITAIGVSRLHPMVLAG  415 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTC--CEEEEE-CSSCEEEEECCSSCCBCEEE
T ss_pred             cccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccccc--ceeeec-CCCceEEEEeCCCCCeEEEE
Confidence             111111  1246799999998 466666667788887654321  112221 12345567888888765543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.81  E-value=0.042  Score=51.59  Aligned_cols=151  Identities=15%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             CcceEEEecCCCEEE-----EecCCeEEEEE-cCC-----ce----EEeee---ecCccccCeEECCC-CcEEE-EECCC
Q 017317           78 GPEDVCVDRNGVLYT-----ATRDGWIKRLH-KNG-----TW----ENWKL---IGGDTLLGITTTQE-NEILV-CDADK  137 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v-----~~~~g~I~~~~-~~g-----~~----~~~~~---~~~~p~~gl~~d~~-g~L~v-a~~~~  137 (373)
                      ...++++.++|...+     ++.++.|..++ .++     +.    ..+..   ...... ++++.++ +++++ +...+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            467899999887664     33577888888 221     11    11111   123456 8999987 66655 55555


Q ss_pred             cEEEEe-cCCcEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC
Q 017317          138 GLLKVT-EEGVTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS  216 (373)
Q Consensus       138 gl~~~~-~~g~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~  216 (373)
                      .+..+| .++.......  + ....+.++++.++|...++.+                 ..|.|..+|.+......+...
T Consensus       173 ~v~iwD~~~~~~~~~~~--~-~~~~v~~v~wspdg~~lasgs-----------------~dg~v~iwd~~~~~~~~~~~~  232 (434)
T 2oit_A          173 SIAVLQVTETVKVCATL--P-STVAVTSVCWSPKGKQLAVGK-----------------QNGTVVQYLPTLQEKKVIPCP  232 (434)
T ss_dssp             CEEEEEESSSEEEEEEE--C-GGGCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTCCEEEEECCC
T ss_pred             eEEEEEcCCCcceeecc--C-CCCceeEEEEcCCCCEEEEEc-----------------CCCcEEEEccCCcccccccCC
Confidence            677777 5552111111  1 123578899999996544432                 247888899873323222211


Q ss_pred             CC-------CcceEEEccCCCEEEEEeCCC------CeEEEEEecC
Q 017317          217 LF-------FANGVALSKDEDYLVVCETFK------FRCLKYWLKG  249 (373)
Q Consensus       217 ~~-------~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~~  249 (373)
                      ..       ....+++++++.++.......      ..+..|++..
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            11       235678888876554444333      2366677653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.76  E-value=0.1  Score=52.20  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=50.0

Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~  276 (373)
                      .|.|..+|+.+++............+-.+...+..+|++ +.++.++.||.+..+.  ...+.........-+.+..+|+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~ty~~~G~  530 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEK--LWEQPAASGVMAAPVTYSVDGE  530 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTE
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCcc--ceeeeCCCCcccCceEEEECCE
Confidence            378999999999865432221112333566666656665 5678899999754322  1122111111122255567999


Q ss_pred             EEEEEecCC
Q 017317          277 FWIAILQLS  285 (373)
Q Consensus       277 lwva~~~~~  285 (373)
                      .||+...+.
T Consensus       531 qyv~~~~G~  539 (689)
T 1yiq_A          531 QYVTFMAGW  539 (689)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999987653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.71  E-value=0.28  Score=48.88  Aligned_cols=105  Identities=12%  Similarity=0.091  Sum_probs=59.7

Q ss_pred             ccceeEEcCCCc-E-EEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeC
Q 017317          161 LADDLIAATDGS-I-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       161 ~~~~l~~~~dG~-l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      ...++.+.|||+ | |..+.+              +.....|+.+|.++++.... ... ....+++|+ |++.++++..
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~-~k~~~~~Ws-Dg~~l~y~~~  193 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKD-VKFSGISWL-GNEGFFYSSY  193 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEE-EESCCCEEE-TTTEEEEEES
T ss_pred             EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCC-ceeccEEEe-CCCEEEEEEe
Confidence            456778999996 3 333322              11224688999988875432 111 113578999 9998888764


Q ss_pred             C------------CCeEEEEEecCCCCcceeEEecCC--CCCCCceeECCCCCE-EEEE
Q 017317          238 F------------KFRCLKYWLKGESKEQTEIFVENL--PGGPDNIKLAPDGSF-WIAI  281 (373)
Q Consensus       238 ~------------~~~i~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~dG~l-wva~  281 (373)
                      .            ...|+++++.........++....  +..-.++..++||+. .+..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            4            245888876543322222332111  112234678899974 4443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.60  E-value=0.21  Score=50.21  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=58.9

Q ss_pred             ccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC
Q 017317          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       161 ~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  239 (373)
                      ...++.+.|||+ |.++...             .+.....|+.+|.++++............+++|+|| +.++++....
T Consensus       164 ~~~~~~~SPDG~~la~~~~~-------------~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQD-------------GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEE-------------TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCC
T ss_pred             EEEeEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecC
Confidence            355788999996 4333211             011124699999988876432111111257899999 8888876432


Q ss_pred             -------------CeEEEEEecCCCCcceeEEecCC-CCCCCceeECCCCC-EEEEE
Q 017317          240 -------------FRCLKYWLKGESKEQTEIFVENL-PGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       240 -------------~~i~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~dG~-lwva~  281 (373)
                                   ..|+++++.+.......++.... +....++.+++||+ |.++.
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  286 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITS  286 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEE
Confidence                         34777776543222222222111 11234567899997 44444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=96.42  E-value=0.49  Score=43.30  Aligned_cols=185  Identities=10%  Similarity=0.005  Sum_probs=90.2

Q ss_pred             cceEEEec--------CCCEE-EEecCCeEEEEE-cCCc-eEEeeeecCccccCeEECCCCc--EEEEECCCcEEEEe-c
Q 017317           79 PEDVCVDR--------NGVLY-TATRDGWIKRLH-KNGT-WENWKLIGGDTLLGITTTQENE--ILVCDADKGLLKVT-E  144 (373)
Q Consensus        79 P~~ia~d~--------~G~l~-v~~~~g~I~~~~-~~g~-~~~~~~~~~~p~~gl~~d~~g~--L~va~~~~gl~~~~-~  144 (373)
                      -.++++.|        +|++. .+..++.|..+| .++. ............ ++++.+++.  |..+...+.+..+| .
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEEECC
Confidence            45577764        56666 566889999998 3443 333333344556 899998873  44455544456666 4


Q ss_pred             CC-c-EEEeeccC--------------------CccccccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEE
Q 017317          145 EG-V-TVLASHVN--------------------GSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLL  201 (373)
Q Consensus       145 ~g-~-~~l~~~~~--------------------~~~~~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~  201 (373)
                      .+ . ........                    ......+..+.+. +||...++.+.                 .+.+.
T Consensus       218 t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-----------------d~~i~  280 (393)
T 4gq1_A          218 LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-----------------SGAWL  280 (393)
T ss_dssp             CCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-----------------TSEEE
T ss_pred             CCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-----------------CCCEE
Confidence            44 1 11100000                    0011123445544 67765555332                 34555


Q ss_pred             EEeCCCCeEEEee-------------------cCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecC
Q 017317          202 KYDPSLNETSILL-------------------DSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVEN  261 (373)
Q Consensus       202 ~~d~~~~~~~~~~-------------------~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  261 (373)
                      .+|..+++.....                   .......+..+++ .++.+.++...++.|..++........  ... .
T Consensus       281 vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~-~  357 (393)
T 4gq1_A          281 RWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--IPI-Q  357 (393)
T ss_dssp             EEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--EEE-E
T ss_pred             EEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--Eec-C
Confidence            5554433211100                   0011122334444 344455566667788888876433221  122 1


Q ss_pred             CCCCCCceeECCCCCEEEEEecC
Q 017317          262 LPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       262 ~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      ...-...+++++||+++++...+
T Consensus       358 ~~~~V~svafspdG~~LA~as~~  380 (393)
T 4gq1_A          358 LGMPIVDFCWHQDGSHLAIATEG  380 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEESS
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCC
Confidence            12235678999999977665443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.41  E-value=0.055  Score=50.77  Aligned_cols=104  Identities=9%  Similarity=-0.061  Sum_probs=58.7

Q ss_pred             ccceeEEcCCCcEEE----EeCCccccccccccccccccCCceEEEEeCCCC-----eE------EEeec-CCCCcceEE
Q 017317          161 LADDLIAATDGSIYF----SVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-----ET------SILLD-SLFFANGVA  224 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v----~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-----~~------~~~~~-~~~~~~gi~  224 (373)
                      .+.+++++++|+..+    +.+                 ..+.|..+|..+.     +.      ..... .......++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  156 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSE-----------------YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMK  156 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETT-----------------TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEE
T ss_pred             cccEEEEcCCCCEEEEEEeccC-----------------CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEE
Confidence            477899999997555    322                 2356666664322     00      11111 123457899


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecC
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQL  284 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~  284 (373)
                      |+|+...++++...++.|..+++....  ...... ........++.+++|+ |.++...+
T Consensus       157 ~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg  214 (434)
T 2oit_A          157 WNPTVPSMVAVCLADGSIAVLQVTETV--KVCATL-PSTVAVTSVCWSPKGKQLAVGKQNG  214 (434)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEEESSSE--EEEEEE-CGGGCEEEEEECTTSSCEEEEETTS
T ss_pred             ECCCCCCEEEEEECCCeEEEEEcCCCc--ceeecc-CCCCceeEEEEcCCCCEEEEEcCCC
Confidence            999843366666667789999876531  111111 1122456788899996 45555444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.31  E-value=0.59  Score=42.23  Aligned_cols=50  Identities=16%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             CceEEEEeCCCCeEEEeecCC-CCcc-eEEEccCCCEEEEEeCCCCeEEEEEe
Q 017317          197 HGKLLKYDPSLNETSILLDSL-FFAN-GVALSKDEDYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~-~~~~-gi~~~~dg~~l~v~~~~~~~i~~~~~  247 (373)
                      .+.|..+|..+++......+. .... .++|+|||+ ++++...++.|..++.
T Consensus       304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred             CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence            467888898888765544432 2233 489999999 4555566777877763

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.28  E-value=0.081  Score=51.47  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=70.7

Q ss_pred             CCcceEEEccCCCEEEEEeCCC---------------------CeEEEEEecCCCC--c--ceeEEec------------
Q 017317          218 FFANGVALSKDEDYLVVCETFK---------------------FRCLKYWLKGESK--E--QTEIFVE------------  260 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~---------------------~~i~~~~~~~~~~--~--~~~~~~~------------  260 (373)
                      ..|.+++++|....+|++.+++                     +.|++|..++...  .  ..+.+..            
T Consensus       384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~  463 (592)
T 3zwu_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence            3467899997544599987743                     3688887653221  1  1122210            


Q ss_pred             ---------CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECC-CCcE
Q 017317          261 ---------NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAA-NGIV  330 (373)
Q Consensus       261 ---------~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~  330 (373)
                               +.-..||||++|++|+|||++-++.+...++.                      ......++.+++ .|++
T Consensus       464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~----------------------~~gnn~~~~~~~~~g~~  521 (592)
T 3zwu_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFA----------------------GMGNNQMLCADPATGEI  521 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGT----------------------TTCSCEEEEECTTTCCE
T ss_pred             ccccccCCCCCccCCcceEECCCCCEEEEecCCCccccccc----------------------ccccceEEEEeCCCCeE
Confidence                     01236999999999999999876422111110                      111123555664 4777


Q ss_pred             EEEEeCCCCceecceeEEEEeC--CEEEEeeC
Q 017317          331 IRKFEDPNGKVMSFVTSALEFD--DHLYLGSL  360 (373)
Q Consensus       331 ~~~~~~~~g~~~~~~~~~~~~~--g~L~vgs~  360 (373)
                      .+.+..|.|   ..++.+++.+  .+||+.-.
T Consensus       522 ~rf~~~P~g---aE~TG~~fspDg~tlfvniQ  550 (592)
T 3zwu_A          522 RRFMVGPIG---CEVTGISFSPDQKTLFVGIQ  550 (592)
T ss_dssp             EEEEECCTT---CEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEeCCCC---ccCcCeeECCCCCEEEEEEE
Confidence            777777765   3677887763  47887643

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=96.15  E-value=1.3  Score=44.77  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             CcceEEEec--CCCEEEEecCCeEEEEEcCCc-eEEeeeec-------CccccCeEECCC--CcEEEEECC------CcE
Q 017317           78 GPEDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG-------GDTLLGITTTQE--NEILVCDAD------KGL  139 (373)
Q Consensus        78 ~P~~ia~d~--~G~l~v~~~~g~I~~~~~~g~-~~~~~~~~-------~~p~~gl~~d~~--g~L~va~~~------~gl  139 (373)
                      ...+|++++  .+.+|+++..++|++-+..|+ ++.+....       .... +|++++.  +.+|++...      .+|
T Consensus        16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccEE
Confidence            356688887  478999998889998875553 55443211       1244 7888864  468998643      345


Q ss_pred             EEEecCC--cEEEeeccC--C-ccc-cccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEE
Q 017317          140 LKVTEEG--VTVLASHVN--G-SRI-NLADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETS  211 (373)
Q Consensus       140 ~~~~~~g--~~~l~~~~~--~-~~~-~~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~  211 (373)
                      ++-+..|  .+.+.....  + .+. .....|++++.  +.+|++..                  .+.||+=+-.+...+
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~------------------~~gl~~S~DgG~TW~  156 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------TEGIWKSSDRAKTWT  156 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS------------------SSCEEEESSTTSSCE
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec------------------cCCEEEECCCCcccC
Confidence            5544445  444432111  0 011 12346888874  47888642                  246776554334444


Q ss_pred             EeecCC------CCcceEEEcc-CCCEEEEEeCCCCeEEE
Q 017317          212 ILLDSL------FFANGVALSK-DEDYLVVCETFKFRCLK  244 (373)
Q Consensus       212 ~~~~~~------~~~~gi~~~~-dg~~l~v~~~~~~~i~~  244 (373)
                      .+....      .....++++| +.+.+|++......|++
T Consensus       157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~  196 (789)
T 1sqj_A          157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  196 (789)
T ss_dssp             EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence            433210      1123466776 44568887643245554

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=95.56  E-value=2.3  Score=42.85  Aligned_cols=147  Identities=14%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             CcceEEEec--CCCEEEEecCCeEEEEEcCCc-eEEeeeec------------CccccCeEECC--CCcEEEEEC-----
Q 017317           78 GPEDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLIG------------GDTLLGITTTQ--ENEILVCDA-----  135 (373)
Q Consensus        78 ~P~~ia~d~--~G~l~v~~~~g~I~~~~~~g~-~~~~~~~~------------~~p~~gl~~d~--~g~L~va~~-----  135 (373)
                      .-.+|+++|  .+.+|++...|+|++-+..|+ ++.+....            .... .|++++  .+.+|++..     
T Consensus        22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~~~~~g~~~~~  100 (763)
T 3a0f_A           22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRLYLAQGDYVQW  100 (763)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCEEEEECSCTTT
T ss_pred             ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEEEEEecccccC
Confidence            456788887  357899998888988875553 44433211            1234 677886  357999764     


Q ss_pred             --CCcEEEEecCC--cEEEeeccC-C-c-ccc-ccceeEEcCC--CcEEEEeCCccccccccccccccccCCceEEEEeC
Q 017317          136 --DKGLLKVTEEG--VTVLASHVN-G-S-RIN-LADDLIAATD--GSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       136 --~~gl~~~~~~g--~~~l~~~~~-~-~-~~~-~~~~l~~~~d--G~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  205 (373)
                        ..+|++-...|  .+.+..... + . ... ....|++++.  +.+|++..                  .+.||+=+-
T Consensus       101 ~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------------~~~l~~S~D  162 (763)
T 3a0f_A          101 DPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR------------------TQGLWRSTD  162 (763)
T ss_dssp             CSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS------------------SSCEEEESS
T ss_pred             CCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC------------------CCcEEEECC
Confidence              24455544445  555432111 0 0 001 1136888864  67888742                  246776543


Q ss_pred             CCCeEEEeecCCC-------CcceEEEccC-CCEEEEEeCCCCeEEE
Q 017317          206 SLNETSILLDSLF-------FANGVALSKD-EDYLVVCETFKFRCLK  244 (373)
Q Consensus       206 ~~~~~~~~~~~~~-------~~~gi~~~~d-g~~l~v~~~~~~~i~~  244 (373)
                      .+...+.+. .+.       ....++++|. .+.+|++......|++
T Consensus       163 gG~TW~~~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~  208 (763)
T 3a0f_A          163 RAQTWSRMN-QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWV  208 (763)
T ss_dssp             TTSSCEECT-TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred             CCcCccccc-cCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEE
Confidence            333444432 111       1234667764 3458887654323444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.37  E-value=1.5  Score=39.58  Aligned_cols=185  Identities=10%  Similarity=-0.029  Sum_probs=86.8

Q ss_pred             CCCEEEEe---cCCeEEEEE--cCCceEEe-eeecCccccCeEECC---CCcEEEEEC-CCcEEEEe-cCC--cEEEeec
Q 017317           87 NGVLYTAT---RDGWIKRLH--KNGTWENW-KLIGGDTLLGITTTQ---ENEILVCDA-DKGLLKVT-EEG--VTVLASH  153 (373)
Q Consensus        87 ~G~l~v~~---~~g~I~~~~--~~g~~~~~-~~~~~~p~~gl~~d~---~g~L~va~~-~~gl~~~~-~~g--~~~l~~~  153 (373)
                      +|++....   .++.|..++  ++|+...- ........ .+++.+   ++.++++.. ++.|..+| ++|  +..+...
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~-~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEET-ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSC-EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCcee-eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence            45555443   366666666  55653221 11112222 344444   668887644 44455667 677  4444321


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec----CCCCcceEEEccCC
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD----SLFFANGVALSKDE  229 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~----~~~~~~gi~~~~dg  229 (373)
                        ......+..+++.|+|.+.++.+.. .    ....+..+...+.+..+|+++++......    ......-+..+.++
T Consensus       223 --~~~v~~v~~vafSpdG~~lvs~s~~-~----~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg  295 (356)
T 2w18_A          223 --DSYQASVCHKAYSEMGLLFIVLSHP-C----AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKD  295 (356)
T ss_dssp             --C---CCCEEEEEEETTEEEEEEC-----------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEET
T ss_pred             --CcceeeeEEEEECCCCCEEEEeccC-C----CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCC
Confidence              1112345677899999877653320 0    00123334455677778988876543210    00100111222223


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      . +.++...++.|..+|+...+.  ...+.......-..+++.+||.+.++..
T Consensus       296 ~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          296 H-CAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             T-EEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             C-EEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            3 455655667788888754321  1122211111122378999998766543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.03  E-value=1.5  Score=37.82  Aligned_cols=143  Identities=14%  Similarity=0.016  Sum_probs=80.1

Q ss_pred             ceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeee---cCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEEEe
Q 017317           80 EDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI---GGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLA  151 (373)
Q Consensus        80 ~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~---~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~l~  151 (373)
                      ..|+..+++.|-+| .++.|..+| .+|+.......   ..... .+++.++|++.++ ...+.+..++ +++  ...+.
T Consensus        29 ~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            34777777644354 478999999 56765433221   22345 8899999986654 4444466666 566  22221


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEeecCCCCcceEEEccCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSILLDSLFFANGVALSKDE  229 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~~~~~~~~~gi~~~~dg  229 (373)
                      .       +......+..++.+.++.+.                 .+.+..++..+..  ...+.........+++++++
T Consensus       107 ~-------h~~~~~~~~~~~~~l~s~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          107 S-------HSARVGSLSWNSYILSSGSR-----------------SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             C-------CSSCEEEEEEETTEEEEEET-----------------TSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             C-------ccceEEEeecCCCEEEEEec-----------------CCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            1       11122334445555554332                 3455555544332  22233334445678889999


Q ss_pred             CEEEEEeCCCCeEEEEEecC
Q 017317          230 DYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +.++ +...++.|..+++..
T Consensus       163 ~~l~-s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          163 RHLA-SGGNDNLVNVWPSAP  181 (318)
T ss_dssp             SEEE-EEETTSCEEEEESSC
T ss_pred             CEEE-EEecCcceeEEECCC
Confidence            8554 444567788888754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.57  E-value=0.026  Score=51.75  Aligned_cols=59  Identities=12%  Similarity=-0.007  Sum_probs=33.8

Q ss_pred             CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          170 DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       170 dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                      ++.+|+++..                  +.|+.+|..+++....... .......+..+++ +|++.+.++.|+.++..
T Consensus         9 ~~~v~~gs~d------------------g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~   67 (369)
T 2hz6_A            9 ETLLFVSTLD------------------GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSK   67 (369)
T ss_dssp             TTEEEEEETT------------------SEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC---
T ss_pred             CCEEEEEcCC------------------CEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECC
Confidence            5788888643                  7899999888876543322 2222223344555 77776677789999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.53  E-value=3.7  Score=40.38  Aligned_cols=122  Identities=11%  Similarity=0.069  Sum_probs=61.7

Q ss_pred             EEEecCCCEEE-Ee-cCCeEEEEEc-CCceEEeeeec-CccccCeEECCCCcEEEEECC-------CcEEEEe-cCC-cE
Q 017317           82 VCVDRNGVLYT-AT-RDGWIKRLHK-NGTWENWKLIG-GDTLLGITTTQENEILVCDAD-------KGLLKVT-EEG-VT  148 (373)
Q Consensus        82 ia~d~~G~l~v-~~-~~g~I~~~~~-~g~~~~~~~~~-~~p~~gl~~d~~g~L~va~~~-------~gl~~~~-~~g-~~  148 (373)
                      +++..+|.||+ |. ....+.++|+ .++++...... .+-..+.+.-++|++||....       ..+.++| .++ .+
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            55667899995 43 3457899994 45565543222 222114455568999986431       2467788 455 55


Q ss_pred             EEeeccCCcccccc-ceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          149 VLASHVNGSRINLA-DDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       149 ~l~~~~~~~~~~~~-~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      .+... ...++... ...++..++.+|+.....        ..++.......+++||+.++....
T Consensus       328 ~~~~~-~~~p~~~~~~~~~~~~~~~iyv~Gg~~--------g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          328 SLPNA-KVNPMLTADKQGLYRSDNHAWLFGWKK--------GSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             EETTS-CSGGGCCCCTTGGGTTTCSCCEEECGG--------GCEEECCSSSEEEEEECSTTCEEE
T ss_pred             eCCCc-cccccccccccceeecCCceEEEECCC--------CcEEEecCccceeeeecCCcceee
Confidence            54210 00111100 011222466776654320        011111123578899998776443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.16  E-value=3.2  Score=37.68  Aligned_cols=133  Identities=11%  Similarity=-0.006  Sum_probs=70.3

Q ss_pred             EEecCCeEEEEE-cCCceEEee---e---ecCccccCeEECC--------CCcEEEE-ECCCcEEEEe-cCC--cEEEee
Q 017317           92 TATRDGWIKRLH-KNGTWENWK---L---IGGDTLLGITTTQ--------ENEILVC-DADKGLLKVT-EEG--VTVLAS  152 (373)
Q Consensus        92 v~~~~g~I~~~~-~~g~~~~~~---~---~~~~p~~gl~~d~--------~g~L~va-~~~~gl~~~~-~~g--~~~l~~  152 (373)
                      .+..++.|..++ ..++.....   .   ..+... .+++.+        +|++++. ..++.+..+| .++  ...+..
T Consensus       106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~  184 (393)
T 4gq1_A          106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP  184 (393)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             EEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC
Confidence            566788888887 344332211   1   123345 777764        6777665 3445566666 554  222222


Q ss_pred             ccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec----------------
Q 017317          153 HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD----------------  215 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~----------------  215 (373)
                      .     ...+..+++.|++. +.++.+                 ..+.|..+|..+++......                
T Consensus       185 ~-----~~~v~~v~~~p~~~~~l~~~~-----------------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          185 L-----SSPGISVQFRPSNPNQLIVGE-----------------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             C-----SSCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             C-----CCCcEEEEECCCCCceEEecC-----------------CCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence            1     12456889999874 444432                 24667777766554221100                


Q ss_pred             ----------CCCCcceEEEc-cCCCEEEEEeCCCCeEEEEEec
Q 017317          216 ----------SLFFANGVALS-KDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       216 ----------~~~~~~gi~~~-~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                                .......+.++ +|++ .+++...++.+..+++.
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-
T ss_pred             cceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECc
Confidence                      00112345665 7888 45555667788888865

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.94  E-value=1.7  Score=43.65  Aligned_cols=106  Identities=14%  Similarity=0.054  Sum_probs=59.1

Q ss_pred             ccceeEEc-CCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCC-eEEEeecCCC-CcceEEEccCCCEEEEEe
Q 017317          161 LADDLIAA-TDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN-ETSILLDSLF-FANGVALSKDEDYLVVCE  236 (373)
Q Consensus       161 ~~~~l~~~-~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~-~~~~~~~~~~-~~~gi~~~~dg~~l~v~~  236 (373)
                      ...+..++ |||+ |.++...             .+.....|+.+|.+++ +.  +...+. ...+++|++||+.|+++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEE
Confidence            34567899 9996 5444321             0112235999998887 52  111111 135789999998888775


Q ss_pred             CCC----CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEE
Q 017317          237 TFK----FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAI  281 (373)
Q Consensus       237 ~~~----~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~  281 (373)
                      ...    ..|+++++.+.......++......+-.++..++||+ |.+..
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            421    3688887765432222333322122333456789997 44444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.82  E-value=0.59  Score=42.10  Aligned_cols=109  Identities=16%  Similarity=0.195  Sum_probs=58.6

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeeec--CccccCeE---ECCCCcEEEEE--CCCcEEEEe-cCC-cEEEeec---
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLIG--GDTLLGIT---TTQENEILVCD--ADKGLLKVT-EEG-VTVLASH---  153 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~--~~p~~gl~---~d~~g~L~va~--~~~gl~~~~-~~g-~~~l~~~---  153 (373)
                      +|.+|+++.+|.|+.++ .+|+..-.....  ..+. +..   ...+|.+|+..  ..+.|+.++ .+| .+.-...   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            57899999999999999 677643322221  1111 110   01245666663  345577777 566 3321111   


Q ss_pred             cCCccccccceeEE------cCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317          154 VNGSRINLADDLIA------ATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (373)
Q Consensus       154 ~~~~~~~~~~~l~~------~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  214 (373)
                      ....+...-....+      ..+|.+|++..                  .|+++.+|..+|+.....
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~------------------~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM------------------RTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEE------------------EEEEEEEETTTCCEEEEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEec------------------CCEEEEEECCCCcEEEEE
Confidence            01111111111122      25778898864                  378999999988876543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=91.56  E-value=7.2  Score=39.07  Aligned_cols=147  Identities=13%  Similarity=0.058  Sum_probs=76.8

Q ss_pred             ceEEEe-cCCCEE--EEecCC----eEEEEEc-CC-ceEEeeeecCccccCeEECCCCc-EEEEECC-----CcEEEEe-
Q 017317           80 EDVCVD-RNGVLY--TATRDG----WIKRLHK-NG-TWENWKLIGGDTLLGITTTQENE-ILVCDAD-----KGLLKVT-  143 (373)
Q Consensus        80 ~~ia~d-~~G~l~--v~~~~g----~I~~~~~-~g-~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-----~gl~~~~-  143 (373)
                      .+..+. |||+..  +.+.+|    .|+.++. +| +... ........ ++++.+||+ |+.....     ..|++.+ 
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~~~~-~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSGTNG-EIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEEECS-CCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccCcee-eEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            446778 888743  333333    4888884 44 3110 00011234 788999984 5544321     2466666 


Q ss_pred             cCC-c--EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCC--eE--EEeec
Q 017317          144 EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN--ET--SILLD  215 (373)
Q Consensus       144 ~~g-~--~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~--~~--~~~~~  215 (373)
                      .++ .  ..+..... .  .+..++.+++||+ |+++...               .....||.+|.+++  +.  +.+..
T Consensus       255 gt~~~~~~lv~~~~~-~--~~~~~~~~SpDg~~l~~~~~~---------------~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHN-P--LFSAFMYKAADTNTLCIGSQS---------------PETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             TSCGGGCEEEEECCC-T--TCEEEEEECTTSSEEEEEEEC---------------SSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             CCCchhcEEEEecCC-C--ceEEEEEECCCCCEEEEEecC---------------CCCceEEEEECCCCCCCceeEEeec
Confidence            444 2  23322211 1  1234678899995 5555422               12357899988764  33  44433


Q ss_pred             CCCCcceEEEccC---CCEEEEEeCC----CCeEEEEEecC
Q 017317          216 SLFFANGVALSKD---EDYLVVCETF----KFRCLKYWLKG  249 (373)
Q Consensus       216 ~~~~~~gi~~~~d---g~~l~v~~~~----~~~i~~~~~~~  249 (373)
                      ..   .+..++++   |+.+|+....    +.+|+++++++
T Consensus       317 ~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          317 RE---KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CC---TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CC---CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            22   23333344   7767766432    45888888754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=89.65  E-value=5.7  Score=39.02  Aligned_cols=111  Identities=13%  Similarity=-0.002  Sum_probs=64.7

Q ss_pred             CeEECC-CCcEEEEECC------------CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCcccccc
Q 017317          121 GITTTQ-ENEILVCDAD------------KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLH  185 (373)
Q Consensus       121 gl~~d~-~g~L~va~~~------------~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~  185 (373)
                      +.++.+ +|+||+....            ..+..+| .++ .+.+.... ........++++..+|.||+..+.      
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~g~lyv~GG~------  262 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGN------  262 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTTSCEEEECSS------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCCCCccccccCCCCCCEEEeCCC------
Confidence            556655 8899986321            1256677 455 43332211 111123345677789999998643      


Q ss_pred             ccccccccccCCceEEEEeCCCCeEEEeecC--CCCcceEEEccCCCEEEEEeC-CC-----CeEEEEEecC
Q 017317          186 NWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LFFANGVALSKDEDYLVVCET-FK-----FRCLKYWLKG  249 (373)
Q Consensus       186 ~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~~-~~-----~~i~~~~~~~  249 (373)
                                ....+++||+.+++.+.+..-  -+.-...++.++++ +|+... ..     +.+.+||...
T Consensus       263 ----------~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          263 ----------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             ----------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ----------CCCceEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence                      123699999998887765321  11224566667887 777754 22     4688888643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.71  E-value=13  Score=32.11  Aligned_cols=143  Identities=13%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             CCEE-EEec--CCeEEEEE-cCCceEEeeeecC-ccccCeEECCCCcEEEEEC-----CCcEEEEe-cCC-cEEEeeccC
Q 017317           88 GVLY-TATR--DGWIKRLH-KNGTWENWKLIGG-DTLLGITTTQENEILVCDA-----DKGLLKVT-EEG-VTVLASHVN  155 (373)
Q Consensus        88 G~l~-v~~~--~g~I~~~~-~~g~~~~~~~~~~-~p~~gl~~d~~g~L~va~~-----~~gl~~~~-~~g-~~~l~~~~~  155 (373)
                      +.|| +|..  ...+.++| ..++++.....+. +...+++. -++.||+...     ...+.++| .++ .+.+... +
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~-p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP-P   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC-S
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC-C
Confidence            4556 4432  45688888 4455665543222 11102333 3678888632     13477888 555 5555332 1


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEE
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYL  232 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~gi~~~~dg~~l  232 (373)
                      ...  .-..++ .-++.||+..+...           .......+++||+.+++.+.+.. ...+   ...+. -++ .+
T Consensus        90 ~~r--~~~~~~-~~~~~iyv~GG~~~-----------~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~i  152 (306)
T 3ii7_A           90 TPR--DSLAAC-AAEGKIYTSGGSEV-----------GNSALYLFECYDTRTESWHTKPS-MLTQRCSHGMVE-ANG-LI  152 (306)
T ss_dssp             SCC--BSCEEE-EETTEEEEECCBBT-----------TBSCCCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETT-EE
T ss_pred             ccc--cceeEE-EECCEEEEECCCCC-----------CCcEeeeEEEEeCCCCceEeCCC-CcCCcceeEEEE-ECC-EE
Confidence            111  111222 23788998754210           11223579999999888876532 2222   22222 244 48


Q ss_pred             EEEeCC---------CCeEEEEEecC
Q 017317          233 VVCETF---------KFRCLKYWLKG  249 (373)
Q Consensus       233 ~v~~~~---------~~~i~~~~~~~  249 (373)
                      |+....         .+.+++|+...
T Consensus       153 yv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          153 YVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             EEECCEESCTTTCEECCCEEEEETTT
T ss_pred             EEECCCCCCCCcccccceEEEeCCCC
Confidence            886531         35588888654

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=87.48  E-value=26  Score=35.32  Aligned_cols=115  Identities=9%  Similarity=0.049  Sum_probs=64.5

Q ss_pred             CccccCeEECCC--CcEEEEECCCcEEEEecCC--cEEEeeccCCc--cccccceeEEcCC--CcEEEEeCCcccccccc
Q 017317          116 GDTLLGITTTQE--NEILVCDADKGLLKVTEEG--VTVLASHVNGS--RINLADDLIAATD--GSIYFSVASTKFGLHNW  187 (373)
Q Consensus       116 ~~p~~gl~~d~~--g~L~va~~~~gl~~~~~~g--~~~l~~~~~~~--~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~~  187 (373)
                      ++.. +|++++.  +.+|++....+|++-+..|  .+.+.......  ....+.+|++++.  +.+|++.....      
T Consensus        15 g~i~-~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~------   87 (789)
T 1sqj_A           15 GYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV------   87 (789)
T ss_dssp             SCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT------
T ss_pred             CcEE-EEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC------
Confidence            4566 8888864  5799988767888877555  45443211100  1235678999974  47898753200      


Q ss_pred             ccccccccCCceEEEEeCCCCeEEEeecCCC---------CcceEEEccC-CCEEEEEeCCCCeEEE
Q 017317          188 GLDLLEAKPHGKLLKYDPSLNETSILLDSLF---------FANGVALSKD-EDYLVVCETFKFRCLK  244 (373)
Q Consensus       188 ~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~---------~~~gi~~~~d-g~~l~v~~~~~~~i~~  244 (373)
                            ....+.|++=+-.+...+.+...+.         ....++++|. .+.+|+.. ....|++
T Consensus        88 ------~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~-~~~gl~~  147 (789)
T 1sqj_A           88 ------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWK  147 (789)
T ss_dssp             ------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC-SSSCEEE
T ss_pred             ------CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe-ccCCEEE
Confidence                  0001567776544445555432211         1246888874 34566654 3345654

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=86.78  E-value=11  Score=37.94  Aligned_cols=151  Identities=14%  Similarity=0.014  Sum_probs=77.0

Q ss_pred             ceEEEec--CCCEEEEecCCeEEEEEcCC-ceEEeeee-c---CccccCeEEC--CCCcEEEEECCCcEEEEecCC--cE
Q 017317           80 EDVCVDR--NGVLYTATRDGWIKRLHKNG-TWENWKLI-G---GDTLLGITTT--QENEILVCDADKGLLKVTEEG--VT  148 (373)
Q Consensus        80 ~~ia~d~--~G~l~v~~~~g~I~~~~~~g-~~~~~~~~-~---~~p~~gl~~d--~~g~L~va~~~~gl~~~~~~g--~~  148 (373)
                      ..+++|+  .+.+|+++ ++.|++-...| .++.+... +   .... -|.+.  .++.||++....+|++-+..|  .+
T Consensus       591 ~~i~~d~~~~~~~y~g~-~g~v~~S~DgG~tW~~~~~~lp~~~~~~~-~i~~~~~~~~~l~~~~~~~~l~~S~D~G~tW~  668 (763)
T 3a0f_A          591 TGIAADRVQANTFYVYV-EGDFFVSTDGGKSYTKKGNGLPCCWTYTG-TPVTSNLRAGELWVSVKGVGIYHSTDFGNTFT  668 (763)
T ss_dssp             SCEEECSSSTTCEEEEE-TTEEEEESSTTSBCEEECBTSCCSSCCCE-EEEECSSSTTCEEEEETTTEEEEESSTTSBCE
T ss_pred             ceEEEeccCCCEEEEEc-CCCEEEEeCCCcCccccccCCCcccCccc-cEEECCCCCCcEEEEcCCCeEEEEcCCCCCce
Confidence            3677876  56788884 67777654333 34444221 1   1122 15555  367899998766777766555  55


Q ss_pred             EEeeccCCcccc--ccceeEEc-C-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec---CCCCcc
Q 017317          149 VLASHVNGSRIN--LADDLIAA-T-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD---SLFFAN  221 (373)
Q Consensus       149 ~l~~~~~~~~~~--~~~~l~~~-~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~---~~~~~~  221 (373)
                      .+.. .......  .-..++.. + ...||+....             +....++||+-+-.+...+.+..   .+..+.
T Consensus       669 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~  734 (763)
T 3a0f_A          669 ALAG-SGSSLNPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGGLWTRLNDDAHNYGGAT  734 (763)
T ss_dssp             ECTT-BTTTBEEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTSCCEECSCTTCCTBCEE
T ss_pred             EccC-CCcccccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCCCcEeccCccccCCCcc
Confidence            5431 1111000  00011222 2 2468876400             00123678887755555666542   233333


Q ss_pred             eEEEccCC-CEEEEEeCCCCeEEEEEe
Q 017317          222 GVALSKDE-DYLVVCETFKFRCLKYWL  247 (373)
Q Consensus       222 gi~~~~dg-~~l~v~~~~~~~i~~~~~  247 (373)
                      .|++++.. ..||++..+ .+|+.-++
T Consensus       735 ~i~~~p~~~~~v~~~T~G-rGi~~g~~  760 (763)
T 3a0f_A          735 VISGDPRIYGRVYIGMNG-RGIICAQA  760 (763)
T ss_dssp             EEEECTTSTTEEEEEEBS-SCEEEEES
T ss_pred             eEEeCCCCCCEEEEeCCC-CeEEEEec
Confidence            57777743 347777544 45665443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.90  E-value=17  Score=31.59  Aligned_cols=208  Identities=13%  Similarity=-0.009  Sum_probs=99.4

Q ss_pred             CeEEEEEc-CCceEEeeeec---CccccCeEECCCCcEEEEECC--------C----cEEEEe-cCC-cEEEeeccCCcc
Q 017317           97 GWIKRLHK-NGTWENWKLIG---GDTLLGITTTQENEILVCDAD--------K----GLLKVT-EEG-VTVLASHVNGSR  158 (373)
Q Consensus        97 g~I~~~~~-~g~~~~~~~~~---~~p~~gl~~d~~g~L~va~~~--------~----gl~~~~-~~g-~~~l~~~~~~~~  158 (373)
                      ..+..+|+ .+++.. ...+   .+...+++. .++.||+....        .    .++++| .++ .+.+... +...
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r   89 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL-PSPR   89 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB-SSCE
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC-Ccch
Confidence            46888884 445543 2211   122213333 46788875321        0    166777 455 5444321 1111


Q ss_pred             ccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ceEEEccCCCEEEEE
Q 017317          159 INLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVALSKDEDYLVVC  235 (373)
Q Consensus       159 ~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~gi~~~~dg~~l~v~  235 (373)
                        .-..++. -++.||+..+....         ........+++||+.+++.+.+.. ...+   ...+. -++ .+|+.
T Consensus        90 --~~~~~~~-~~~~lyv~GG~~~~---------~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv~  154 (315)
T 4asc_A           90 --CLFGLGE-ALNSIYVVGGREIK---------DGERCLDSVMCYDRLSFKWGESDP-LPYVVYGHTVLS-HMD-LVYVI  154 (315)
T ss_dssp             --ESCEEEE-ETTEEEEECCEESS---------TTCCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETT-EEEEE
T ss_pred             --hceeEEE-ECCEEEEEeCCcCC---------CCCcccceEEEECCCCCcEeECCC-CCCcccceeEEE-ECC-EEEEE
Confidence              1112222 37789987542000         001233579999999888876543 2222   22332 344 48887


Q ss_pred             eCC------CCeEEEEEecCCCCcceeEEecCCC-CCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchh
Q 017317          236 ETF------KFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKL  308 (373)
Q Consensus       236 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~  308 (373)
                      ...      .+.+++|+....   +..... ..+ .+-..-+..-+|+||+......                       
T Consensus       155 GG~~~~~~~~~~~~~yd~~~~---~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~-----------------------  207 (315)
T 4asc_A          155 GGKGSDRKCLNKMCVYDPKKF---EWKELA-PMQTARSLFGATVHDGRIIVAAGVTD-----------------------  207 (315)
T ss_dssp             CCBCTTSCBCCCEEEEETTTT---EEEECC-CCSSCCBSCEEEEETTEEEEEEEECS-----------------------
T ss_pred             eCCCCCCcccceEEEEeCCCC---eEEECC-CCCCchhceEEEEECCEEEEEeccCC-----------------------
Confidence            543      246888886532   222211 221 1111122223678887643221                       


Q ss_pred             hhhccCCCccEEEEEECCCCcEEEEEeC-CCCceecceeEEEEeCCEEEEe
Q 017317          309 IKLVAPLHKKAAVVNVAANGIVIRKFED-PNGKVMSFVTSALEFDDHLYLG  358 (373)
Q Consensus       309 ~~~~~~~~~~g~v~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~g~L~vg  358 (373)
                            ......+..||++.+....+.. +..+   ....+...+++||+-
T Consensus       208 ------~~~~~~~~~yd~~~~~W~~~~~~p~~r---~~~~~~~~~~~l~v~  249 (315)
T 4asc_A          208 ------TGLTSSAEVYSITDNKWAPFEAFPQER---SSLSLVSLVGTLYAI  249 (315)
T ss_dssp             ------SSEEEEEEEEETTTTEEEEECCCSSCC---BSCEEEEETTEEEEE
T ss_pred             ------CCccceEEEEECCCCeEEECCCCCCcc---cceeEEEECCEEEEE
Confidence                  1112347888987776666643 2222   122333446777763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.63  E-value=33  Score=33.91  Aligned_cols=148  Identities=10%  Similarity=0.070  Sum_probs=82.5

Q ss_pred             cCCCEEE-Eec----CCeEEEEE-cCCceEEee-e------ecCccccCeEECC-CCcEEEEECC-------CcEEEEe-
Q 017317           86 RNGVLYT-ATR----DGWIKRLH-KNGTWENWK-L------IGGDTLLGITTTQ-ENEILVCDAD-------KGLLKVT-  143 (373)
Q Consensus        86 ~~G~l~v-~~~----~g~I~~~~-~~g~~~~~~-~------~~~~p~~gl~~d~-~g~L~va~~~-------~gl~~~~-  143 (373)
                      -++.||+ |..    ...+++++ .+++++... .      ...+...+++... +|.|||....       ..++++| 
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4788885 432    24578888 456676665 2      1122111344433 7889986321       2477888 


Q ss_pred             cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--CC--
Q 017317          144 EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--LF--  218 (373)
Q Consensus       144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--~~--  218 (373)
                      .+. .+.+.....   ...-...+.-.+|.||+..+..               ..+.+++||+.+++++.+...  ..  
T Consensus       476 ~t~~W~~~~~~p~---~R~~h~~~~~~~~~iyv~GG~~---------------~~~~v~~yd~~t~~W~~~~~~g~~p~~  537 (695)
T 2zwa_A          476 KTREWSMIKSLSH---TRFRHSACSLPDGNVLILGGVT---------------EGPAMLLYNVTEEIFKDVTPKDEFFQN  537 (695)
T ss_dssp             TTTEEEECCCCSB---CCBSCEEEECTTSCEEEECCBC---------------SSCSEEEEETTTTEEEECCCSSGGGGS
T ss_pred             CCCcEEECCCCCC---CcccceEEEEcCCEEEEECCCC---------------CCCCEEEEECCCCceEEccCCCCCCCc
Confidence            555 555432111   1122233443488999975421               111699999999988876532  11  


Q ss_pred             --CcceEEEccCCCEEEEEeCC-------CCeEEEEEecCCC
Q 017317          219 --FANGVALSKDEDYLVVCETF-------KFRCLKYWLKGES  251 (373)
Q Consensus       219 --~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~~~~  251 (373)
                        ....+++..+.+.+|+....       .+.+++|+.....
T Consensus       538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence              12235556553558887532       2568999976543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=84.62  E-value=18  Score=30.96  Aligned_cols=143  Identities=18%  Similarity=0.206  Sum_probs=75.6

Q ss_pred             CCCEEE-Eec-----CCeEEEEE-cCCc---eEEeeeecC-ccccCeEECCCCcEEEEEC------CCcEEEEe-cCC-c
Q 017317           87 NGVLYT-ATR-----DGWIKRLH-KNGT---WENWKLIGG-DTLLGITTTQENEILVCDA------DKGLLKVT-EEG-V  147 (373)
Q Consensus        87 ~G~l~v-~~~-----~g~I~~~~-~~g~---~~~~~~~~~-~p~~gl~~d~~g~L~va~~------~~gl~~~~-~~g-~  147 (373)
                      ++.||+ |..     ...+++++ .+++   ++.....+. +...+++. -+++||+...      ...+.++| .+. .
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            678884 432     24688898 4455   665543221 21102333 3678998632      12477888 555 5


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ceEE
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVA  224 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~gi~  224 (373)
                      +.+......  . .-..++. -++.||+..+...            ......+++||+.+++.+.+.. ...+   ...+
T Consensus       141 ~~~~~~p~~--r-~~~~~~~-~~~~iyv~GG~~~------------~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~  203 (301)
T 2vpj_A          141 SMLGDMQTA--R-EGAGLVV-ASGVIYCLGGYDG------------LNILNSVEKYDPHTGHWTNVTP-MATKRSGAGVA  203 (301)
T ss_dssp             EEEEECSSC--C-BSCEEEE-ETTEEEEECCBCS------------SCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEE
T ss_pred             EECCCCCCC--c-ccceEEE-ECCEEEEECCCCC------------CcccceEEEEeCCCCcEEeCCC-CCcccccceEE
Confidence            555432111  1 1112222 3788998754210            0123579999999888877632 2222   1222


Q ss_pred             EccCCCEEEEEeCC-----CCeEEEEEecC
Q 017317          225 LSKDEDYLVVCETF-----KFRCLKYWLKG  249 (373)
Q Consensus       225 ~~~dg~~l~v~~~~-----~~~i~~~~~~~  249 (373)
                      .. + +.+|+....     .+.+++|+...
T Consensus       204 ~~-~-~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          204 LL-N-DHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EE-T-TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EE-C-CEEEEEeCCCCCcccceEEEEeCCC
Confidence            22 3 358877532     24688898654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=83.71  E-value=26  Score=31.95  Aligned_cols=128  Identities=9%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             cCCcceEEEecCCCEEEEecCCeEEEEEcCC--ceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEe
Q 017317           76 LNGPEDVCVDRNGVLYTATRDGWIKRLHKNG--TWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g--~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~  151 (373)
                      +..+..|++ .+..|+++ .++.|..++...  +............ .+..-+. ++.++...+.|+.++ .++ ...+.
T Consensus        87 lp~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~  162 (388)
T 1xip_A           87 IPDVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TLVILNSVNDLSALDLRTKSTKQLA  162 (388)
T ss_dssp             CTTEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CEEEEECCCCEEEEEccCCcccccc
Confidence            344788899 45667777 778999998321  1111111112223 4444332 366676666677777 555 43321


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE--E-Ee------ec---CCCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET--S-IL------LD---SLFF  219 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~--~-~~------~~---~~~~  219 (373)
                              ..+.++++.++| +.++..                  +|.+..|++++++.  . .+      .+   ....
T Consensus       163 --------~~Vs~v~WSpkG-~~vg~~------------------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~  215 (388)
T 1xip_A          163 --------QNVTSFDVTNSQ-LAVLLK------------------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS  215 (388)
T ss_dssp             --------ESEEEEEECSSE-EEEEET------------------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE
T ss_pred             --------CCceEEEEcCCc-eEEEEc------------------CCcEEEEcCCCccccccceecCCcccccccCCCee
Confidence                    246789999999 555543                  36677778877764  2 23      11   2244


Q ss_pred             cceEEEccCCCEEEE
Q 017317          220 ANGVALSKDEDYLVV  234 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v  234 (373)
                      ...|.|.+++.++.+
T Consensus       216 V~sI~wl~~~~flv~  230 (388)
T 1xip_A          216 PLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEESSSSEEEEE
T ss_pred             EEEEEEecCCeEEEE
Confidence            567888888875554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.83  E-value=23  Score=30.63  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=72.2

Q ss_pred             CCCEEE-Ee----cCCeEEEEEc-CCceEEeeeecC-ccccCeEECCCCcEEEEECC----------CcEEEEe-cCC-c
Q 017317           87 NGVLYT-AT----RDGWIKRLHK-NGTWENWKLIGG-DTLLGITTTQENEILVCDAD----------KGLLKVT-EEG-V  147 (373)
Q Consensus        87 ~G~l~v-~~----~~g~I~~~~~-~g~~~~~~~~~~-~p~~gl~~d~~g~L~va~~~----------~gl~~~~-~~g-~  147 (373)
                      ++.||+ |.    ....+.++++ .++++.....+. +...+++. -++.||+....          ..++++| .+. .
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            456663 32    1245788883 455655432221 11103333 36788886321          2477788 455 5


Q ss_pred             EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCc---ceEE
Q 017317          148 TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFA---NGVA  224 (373)
Q Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~---~gi~  224 (373)
                      +.+.....  + ..-..++. -+|.||+..+..            .......+++||+.+++.+.+.. +..+   ...+
T Consensus       103 ~~~~~~p~--~-r~~~~~~~-~~~~iyv~GG~~------------~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~  165 (308)
T 1zgk_A          103 SPCAPMSV--P-RNRIGVGV-IDGHIYAVGGSH------------GCIHHNSVERYEPERDEWHLVAP-MLTRRIGVGVA  165 (308)
T ss_dssp             EECCCCSS--C-CBTCEEEE-ETTEEEEECCEE------------TTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEE
T ss_pred             eECCCCCc--C-ccccEEEE-ECCEEEEEcCCC------------CCcccccEEEECCCCCeEeECCC-CCccccceEEE
Confidence            54432111  1 11112222 378899874321            01123469999999888877543 2221   2233


Q ss_pred             EccCCCEEEEEeCC-----CCeEEEEEecC
Q 017317          225 LSKDEDYLVVCETF-----KFRCLKYWLKG  249 (373)
Q Consensus       225 ~~~dg~~l~v~~~~-----~~~i~~~~~~~  249 (373)
                      .. + +.+|+....     .+.+++|+...
T Consensus       166 ~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          166 VL-N-RLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             EE-T-TEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EE-C-CEEEEEeCCCCCCcCceEEEEeCCC
Confidence            32 3 358887432     24688888654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.44  E-value=4.1  Score=39.15  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=58.2

Q ss_pred             eEEEEeCCC-----CeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC------CCC-cc-eeEEecC-CCC
Q 017317          199 KLLKYDPSL-----NETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG------ESK-EQ-TEIFVEN-LPG  264 (373)
Q Consensus       199 ~l~~~d~~~-----~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~-~~-~~~~~~~-~~g  264 (373)
                      ++-.+|...     .....+...-..|+|+.++|||++++++.-....+..|+.+-      .+. .. .....+. +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466777754     123344455678999999999999999999999999998651      111 11 1112222 223


Q ss_pred             CCCceeECCCCCEEEEEec
Q 017317          265 GPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       265 ~p~~i~~d~dG~lwva~~~  283 (373)
                      .|-..++|.+|+.|.+..-
T Consensus       379 GPlHt~Fd~~G~aYTtlfi  397 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFI  397 (638)
T ss_dssp             CEEEEEECSSSEEEEEETT
T ss_pred             cccEEEECCCCceEeeeee
Confidence            5888999999999988753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=80.20  E-value=30  Score=30.42  Aligned_cols=155  Identities=14%  Similarity=0.060  Sum_probs=76.9

Q ss_pred             CCCEEE-Ee-cCCeEEEEEcC---CceEEeeeec--CccccCeEECCCCcEEEEECC-----------CcEEEEe-cCC-
Q 017317           87 NGVLYT-AT-RDGWIKRLHKN---GTWENWKLIG--GDTLLGITTTQENEILVCDAD-----------KGLLKVT-EEG-  146 (373)
Q Consensus        87 ~G~l~v-~~-~~g~I~~~~~~---g~~~~~~~~~--~~p~~gl~~d~~g~L~va~~~-----------~gl~~~~-~~g-  146 (373)
                      ++.||+ |. ....+++++..   .+++.....+  .+...+++. -+++|||....           ..++++| .+. 
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            788995 32 44579999953   5666654433  222113333 36789985321           2477788 455 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccc----------------------cccccccCCceEEEEe
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWG----------------------LDLLEAKPHGKLLKYD  204 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~----------------------~~~~~~~~~g~l~~~d  204 (373)
                      .+.+....+ . ...-..++. -++.||+..+..........                      ...........+++||
T Consensus        98 W~~~~~~~p-~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           98 WVKLMSHAP-M-GMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEECSCCCS-S-CCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             EEECCCCCC-c-ccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            555433210 1 111122333 67899987543100000000                      0000001235899999


Q ss_pred             CCCCeEEEeecCCC--Cc-ceEEEccCCCEEEEEeCC------CCeEEEEEe
Q 017317          205 PSLNETSILLDSLF--FA-NGVALSKDEDYLVVCETF------KFRCLKYWL  247 (373)
Q Consensus       205 ~~~~~~~~~~~~~~--~~-~gi~~~~dg~~l~v~~~~------~~~i~~~~~  247 (373)
                      +.+.+.+.+..-..  .. .+++..  ++.+|+....      ...+++|++
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             CCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            99988877643211  11 233332  3458877421      345777876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	1e-41
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	1e-07
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	6e-05

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  147 bits (371), Expect = 1e-41
 Identities = 49/328 (14%), Positives = 102/328 (31%), Gaps = 51/328 (15%)

Query: 70  RLGEGILNGPEDVCVDRNGVLYTATRDGW----------------IKRLHKNGTWENWKL 113
            L +GI NG ED+ +  NG+ + ++   +                +    K       ++
Sbjct: 28  NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI 87

Query: 114 IGGDTL------LGITTTQENE----ILVCDADKG------LLKVTEEGVTVLASHVNGS 157
           IG           GI+T  +++    +LV +               EE   +    +   
Sbjct: 88  IGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK 147

Query: 158 RINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL 217
            +   +D++A      Y +        +    ++        +  Y P  N+  ++ +  
Sbjct: 148 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGF 205

Query: 218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF 277
            FANG+ +S D  Y+ + E    +   Y         T + V +     DNI + P    
Sbjct: 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRVLSFDTLVDNISVDPVTGD 264

Query: 278 WIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDP 337
                  +   + F          +     ++                    V   + + 
Sbjct: 265 LWVGCHPNGMRIFFYDAENPPGSEVLRIQDILS---------------EEPKVTVVYAE- 308

Query: 338 NGKVMSFVTSALEFDDHLYLGSLNTNFI 365
           NG V+   T A  +   L +G++    +
Sbjct: 309 NGTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 12/232 (5%)

Query: 50  LPPASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW 108
           LPP  +   I      + +T          E++    +G ++ T    G I  +  +G  
Sbjct: 4   LPPIYADKPIELAP-AKIITSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ 60

Query: 109 ENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASHVNGSRINLADDLIAA 168
           +    + G  + G+  T   +++    +   +        V     +G+   L     A 
Sbjct: 61  QIHATVEG-KVSGLAFTSNGDLVATGWNADSIP------VVSLVKSDGTVETLLTLPDAI 113

Query: 169 TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD 228
               I     +      ++   +                   +       F     L + 
Sbjct: 114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173

Query: 229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIA 280
            ++L V  T K   L       + +  E  +       D+     +G+ + A
Sbjct: 174 GNFLYVSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA 224

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 25/241 (10%)

Query: 52  PASSASLIPTTSDIQSVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLHKNGTW-E 109
           P  S S + T +    +    +G+    E +  DR G L+     +G I +++      +
Sbjct: 17  PIISESELQTITAEPWLEISKKGLQ--LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 74

Query: 110 NWKLIGGDTLLGITTTQENEILVCD-----ADKGLLKVTEEGVTVLASHVNGSRINLADD 164
              +        I   ++  + VC      +  G+   TE G  +     + S     DD
Sbjct: 75  RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 134

Query: 165 LIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVA 224
           ++  + G  YF+           G+               P     + ++ ++  ANG+A
Sbjct: 135 MVFDSKGGFYFTDFRGYSTNPLGGVY-----------YVSPDFRTVTPIIQNISVANGIA 183

Query: 225 LSKDEDYLVVCETFKFRCLKYWLKGESKE-----QTEIFVENLPGGPDNIKLAPDGSFWI 279
           LS DE  L V ET   R  +  L+ +         T  +      GPD+  +  D + ++
Sbjct: 184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV 243

Query: 280 A 280
           A
Sbjct: 244 A 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.9
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.8
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.55
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.51
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.5
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.39
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.34
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.21
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.09
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.08
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.96
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.86
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.83
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.77
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.73
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.68
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.54
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.53
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.49
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.43
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.43
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.35
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.33
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.26
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.22
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.17
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.16
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.13
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.04
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.04
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.01
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.0
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.92
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.91
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.7
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.34
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.23
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.16
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.14
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.12
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	97.07
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.38
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.32
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.03
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.6
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.37
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.36
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.21
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.18
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.15
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	95.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.86
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	94.86
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.82
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	93.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	93.27
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.69
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.35
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.77
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.62
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	91.21
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.33
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	89.03
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.05
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.11
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	83.99

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=6.2e-28  Score=218.55  Aligned_cols=262  Identities=19%  Similarity=0.295  Sum_probs=196.2

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEec--------CCeEEEEEcC-CceEEeee-----ecCccccCeEECCCCc-EE
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR--------DGWIKRLHKN-GTWENWKL-----IGGDTLLGITTTQENE-IL  131 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~--------~g~I~~~~~~-g~~~~~~~-----~~~~p~~gl~~d~~g~-L~  131 (373)
                      ..+++.++ +.+||++++|++|+||+.+.        +|+|++++++ ++.+.+..     ..+.|. ||+++++|+ ||
T Consensus         9 ~~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~   86 (314)
T d1pjxa_           9 LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLF   86 (314)
T ss_dssp             CCEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEE
T ss_pred             ceEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEE
Confidence            45677777 89999999999999997652        4689999954 44444432     235689 999999985 88


Q ss_pred             EEECCCcEEEEecCC-c-EEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe
Q 017317          132 VCDADKGLLKVTEEG-V-TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE  209 (373)
Q Consensus       132 va~~~~gl~~~~~~g-~-~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~  209 (373)
                      +++..+++++++.+| . +.+.....+.+++.||++++|++|+|||++....+......  .......|+||+++++ ++
T Consensus        87 vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~--~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SC
T ss_pred             EEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc--ceeccCCceEEEEeec-Cc
Confidence            999888899999655 4 43444456667788999999999999999976433322222  2223456899999987 45


Q ss_pred             EEEeecCCCCcceEEEccCCC----EEEEEeCCCCeEEEEEecCC-CCcceeEEec---CCCCCCCceeECCCCCEEEEE
Q 017317          210 TSILLDSLFFANGVALSKDED----YLVVCETFKFRCLKYWLKGE-SKEQTEIFVE---NLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       210 ~~~~~~~~~~~~gi~~~~dg~----~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~g~p~~i~~d~dG~lwva~  281 (373)
                      ...+...+..|||++++++++    .||++++..++|++|+++.. .....+.+..   ...+.|+|+++|++|+|||+.
T Consensus       164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            666677788999999999876    79999999999999998644 2333333332   223569999999999999999


Q ss_pred             ecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCc-EEEEEeCCCCceecceeEEEEeC--CEEEEe
Q 017317          282 LQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGI-VIRKFEDPNGKVMSFVTSALEFD--DHLYLG  358 (373)
Q Consensus       282 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~-~~~~~~~~~g~~~~~~~~~~~~~--g~L~vg  358 (373)
                      +..                                  +.|.+|++++. ....+..+.    ..++.+++.+  ++|||.
T Consensus       244 ~~~----------------------------------g~I~~~dp~~g~~~~~i~~p~----~~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         244 WGS----------------------------------SHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             ETT----------------------------------TEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEE
T ss_pred             cCC----------------------------------CEEEEEeCCCCEEEEEEECCC----CCEEEEEEeCCCCEEEEE
Confidence            865                                  35899998854 455566553    3467787764  379999


Q ss_pred             eCCCCeEEEeeCC
Q 017317          359 SLNTNFIGKLPLK  371 (373)
Q Consensus       359 s~~~~~i~~~~l~  371 (373)
                      +..+.+|.+++++
T Consensus       286 ~~~~g~i~~~~~~  298 (314)
T d1pjxa_         286 EHENNAVWKFEWQ  298 (314)
T ss_dssp             ETTTTEEEEEECS
T ss_pred             ECCCCcEEEEECC
Confidence            9999999999975

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=7.1e-25  Score=198.79  Aligned_cols=246  Identities=21%  Similarity=0.267  Sum_probs=179.6

Q ss_pred             CCcceEEEecCCCEEEEe-cCCeEEEEEcCCc--eEEeeeecCccccCeEECCCCcEEEEECC-----CcEEEEec-CC-
Q 017317           77 NGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGT--WENWKLIGGDTLLGITTTQENEILVCDAD-----KGLLKVTE-EG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~--~~~~~~~~~~p~~gl~~d~~g~L~va~~~-----~gl~~~~~-~g-  146 (373)
                      ...|++++|++|+||+.+ .+++|++++++++  ...+....+.|. ||+++++|+|||++..     .+++.++. .+ 
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            345899999999999655 7899999997765  233445567899 9999999999999642     34777773 34 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEc
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALS  226 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~  226 (373)
                      ...+...  ......+++++++++|++||++....           .....+.+++++++++..+.+..++..|||++++
T Consensus       119 ~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s  185 (319)
T d2dg1a1         119 LQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  185 (319)
T ss_dssp             CEEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             eeeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeec
Confidence            4444332  22345789999999999999986411           1234578999999987888888888999999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEecCCCCc-c-e--eEE-ecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHH
Q 017317          227 KDEDYLVVCETFKFRCLKYWLKGESKE-Q-T--EIF-VENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHL  301 (373)
Q Consensus       227 ~dg~~l~v~~~~~~~i~~~~~~~~~~~-~-~--~~~-~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~  301 (373)
                      +|++.||++++..++|++|+++..... . .  ... .....+.|+|+++|++|+|||+.+..                 
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~-----------------  248 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----------------  248 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----------------
T ss_pred             cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC-----------------
Confidence            999999999999999999998644211 1 1  111 11223469999999999999999875                 


Q ss_pred             HHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCc--eecceeEEEEeC--CEEEEeeC-----CCCeEEEeeC
Q 017317          302 LAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGK--VMSFVTSALEFD--DHLYLGSL-----NTNFIGKLPL  370 (373)
Q Consensus       302 ~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~--~~~~~~~~~~~~--g~L~vgs~-----~~~~i~~~~l  370 (373)
                                       +.|.+++++|+.+..+..|...  ....++.+.+.+  ..+|+.+.     .+-.|.+++.
T Consensus       249 -----------------g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         249 -----------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             -----------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             -----------------CEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence                             3689999999999998776531  123456666653  46777653     2334555554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.93  E-value=4.4e-24  Score=191.28  Aligned_cols=229  Identities=17%  Similarity=0.237  Sum_probs=177.4

Q ss_pred             ceEEEec-CCCEE-EEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccC
Q 017317           80 EDVCVDR-NGVLY-TATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVN  155 (373)
Q Consensus        80 ~~ia~d~-~G~l~-v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~  155 (373)
                      |+...|+ +|.|| +...+++|+++++++........+..+. +++.+++|+||++.. .|+++++ .+| .+.+.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGS-ALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEE-EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSST
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCEEEEEe-CccEEeecccceeeEEeeeec
Confidence            4446664 78888 5558899999995544333334466777 899999999999975 7899999 677 777766555


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEE
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~  235 (373)
                      +.+.+.+|++.+|++|++||++....           .....+.+++++.  ++.+.+...+..|||+++++|++.+|++
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~  165 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYFV  165 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred             CCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEEe
Confidence            56667899999999999999975311           1123567888864  6777777888899999999999999999


Q ss_pred             eCCCCeEEEEEecCCC---CcceeEEec--CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh
Q 017317          236 ETFKFRCLKYWLKGES---KEQTEIFVE--NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK  310 (373)
Q Consensus       236 ~~~~~~i~~~~~~~~~---~~~~~~~~~--~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  310 (373)
                      ++..++|++|+++...   .+....+..  ...+.|+++++|++|+||+|++.+                          
T Consensus       166 dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~--------------------------  219 (295)
T d2ghsa1         166 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE--------------------------  219 (295)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--------------------------
T ss_pred             ecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC--------------------------
Confidence            9999999999986432   223333332  345789999999999999999875                          


Q ss_pred             hccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEeC---CEEEEeeCC
Q 017317          311 LVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEFD---DHLYLGSLN  361 (373)
Q Consensus       311 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~---g~L~vgs~~  361 (373)
                              +.|.+|+++|+.+..+..|..    .+|++++.+   ++|||.|..
T Consensus       220 --------g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         220 --------GAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             --------TEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred             --------CceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECC
Confidence                    368999999999999988752    478888863   589999865

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.92  E-value=1.2e-22  Score=184.60  Aligned_cols=275  Identities=19%  Similarity=0.285  Sum_probs=186.6

Q ss_pred             EeccCCcCCcceEEEecCCCEEEEec-------------CCeEEEEEc-C--CceEEeeeec-------CccccCeEE--
Q 017317           70 RLGEGILNGPEDVCVDRNGVLYTATR-------------DGWIKRLHK-N--GTWENWKLIG-------GDTLLGITT--  124 (373)
Q Consensus        70 ~~~~g~~~~P~~ia~d~~G~l~v~~~-------------~g~I~~~~~-~--g~~~~~~~~~-------~~p~~gl~~--  124 (373)
                      +..+|...+||+|+++++|.+|+++.             .|.|+.+|. +  .+...+....       -.|+ ||.+  
T Consensus        28 ~~i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~l~~  106 (340)
T d1v04a_          28 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFI  106 (340)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEEEEE
T ss_pred             eEcCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ceeEEE
Confidence            44556667999999999999997652             388888882 2  2333332221       3688 8875  


Q ss_pred             CCCCc--EEEEECC--C---cEEEEecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccC
Q 017317          125 TQENE--ILVCDAD--K---GLLKVTEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       125 d~~g~--L~va~~~--~---gl~~~~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      +.+|+  |||.+..  .   .++.++.++ ...+...........+|++++..+|.+|+|+............+...+.+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            55664  7777642  1   245565434 22333344556677899999999999999974311111111123334566


Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECC-CC
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAP-DG  275 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-dG  275 (373)
                      .+.++++|+  ++.+.+.+++.+||||++++|+++|||+++...+|.+|++++.......... .+++.|||+.+|+ +|
T Consensus       187 ~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g  263 (340)
T d1v04a_         187 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG  263 (340)
T ss_dssp             CEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred             ceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCC
Confidence            788999986  4567778889999999999999999999999999999999876544444444 5789999999995 78


Q ss_pred             CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEE----CCCCcEEEEEeCCCCceecceeEEEEe
Q 017317          276 SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNV----AANGIVIRKFEDPNGKVMSFVTSALEF  351 (373)
Q Consensus       276 ~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~----~~~g~~~~~~~~~~g~~~~~~~~~~~~  351 (373)
                      .+|++.....             .++....+.       ......++++    ..++++.+.|.+ +|..+...+.+.+.
T Consensus       264 ~lwva~~p~~-------------~~~~~~~~~-------~~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~  322 (340)
T d1v04a_         264 DLWVGCHPNG-------------MRIFFYDAE-------NPPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVY  322 (340)
T ss_dssp             CEEEEEESCH-------------HHHHSCCTT-------SCCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEE
T ss_pred             EEEEEECCcc-------------cchhhhccc-------CCCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEE
Confidence            9999987542             111111111       0111223443    245777777776 56668888999999


Q ss_pred             CCEEEEeeCCCCeEEEeeC
Q 017317          352 DDHLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       352 ~g~L~vgs~~~~~i~~~~l  370 (373)
                      +|+||+|++..++| .++|
T Consensus       323 ~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         323 KGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             TTEEEEEESSSCEE-EEEC
T ss_pred             CCEEEEEeeeCCce-EecC
Confidence            99999999999887 6765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=5.1e-22  Score=174.47  Aligned_cols=234  Identities=16%  Similarity=0.211  Sum_probs=172.2

Q ss_pred             CCcceEEEecCCCEEEEe--cCCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEe
Q 017317           77 NGPEDVCVDRNGVLYTAT--RDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLA  151 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~--~~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~  151 (373)
                      .+|.+|++|++|++|+.+  .+++|.+++..+.......  ....|. |++++++|+|||++...+++++..++ ...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            579999999999999765  4578888875554433322  235789 99999999999999888888777434 33222


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDED  230 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~  230 (373)
                      .   ...+..|++|+++++|+||+++..                 +.++++++..+...... ..++..|.+++++++++
T Consensus        93 ~---~~~~~~p~~iavd~~g~i~v~d~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          93 P---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             C---CCSCCSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC
T ss_pred             e---eeeeeecccccccccceeEeeccc-----------------cccccccccccceeeeeeecccCCcceeeecCCCC
Confidence            1   123467899999999999999854                 46788998876554433 35678899999999998


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK  310 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  310 (373)
                       +|+++...++|.+++.++..   ...+.......|.++++|++|+||++....                          
T Consensus       153 -~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~--------------------------  202 (260)
T d1rwia_         153 -VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT--------------------------  202 (260)
T ss_dssp             -EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT--------------------------
T ss_pred             -Eeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCC--------------------------
Confidence             99999999999999866532   122222234579999999999999999764                          


Q ss_pred             hccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          311 LVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       311 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                              +.++++++++.....+.. .+  +..++.+..+ +|+||++...+++|.++...+
T Consensus       203 --------~~i~~~~~~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         203 --------NQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             --------TEEEEECTTCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             --------CEEEEEeCCCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence                    247889988876555432 22  4567788776 589999999999999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.90  E-value=2.5e-21  Score=173.82  Aligned_cols=225  Identities=18%  Similarity=0.223  Sum_probs=169.2

Q ss_pred             CcceEEEecCCCEEEEe-cCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe---cCC-cEEEe
Q 017317           78 GPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT---EEG-VTVLA  151 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~---~~g-~~~l~  151 (373)
                      .||++|++++|+||+++ .+++|++++++|+.+.+....+.|. +++++++|+|||++.. ..+..++   ..+ .+.+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            48999999999999776 6889999999999888888888999 9999999999999754 3355555   244 55554


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-----------CCCCc
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-----------SLFFA  220 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-----------~~~~~  220 (373)
                      ....   ...+++++++++|++|+++..                 .+.++++++.++.......           ....+
T Consensus       108 ~~~~---~~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1         108 TLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             ECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             ccCC---ccccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            4322   346899999999999999864                 4789999988776554321           23346


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCC-cceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHH
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATK  299 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~  299 (373)
                      +|+.++  ++++|++++..++|++++.++... .....+.  ....|+++++|++|+||++....               
T Consensus       168 ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~~---------------  228 (302)
T d2p4oa1         168 NGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIY---------------  228 (302)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTT---------------
T ss_pred             cccccc--CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcCC---------------
Confidence            777664  567999999999999999876432 2223332  23579999999999999998754               


Q ss_pred             HHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe----C-CEEEEeeCCCC
Q 017317          300 HLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF----D-DHLYLGSLNTN  363 (373)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~----~-g~L~vgs~~~~  363 (373)
                                         +.|.+++++|+.........+  ...++++.+.    + +.||+++..+.
T Consensus       229 -------------------~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~g~  276 (302)
T d2p4oa1         229 -------------------NSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGGM  276 (302)
T ss_dssp             -------------------CCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTTS
T ss_pred             -------------------CcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCCCc
Confidence                               248999999998777655444  3567888873    2 47999987653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=5.7e-18  Score=149.80  Aligned_cols=237  Identities=13%  Similarity=0.147  Sum_probs=167.5

Q ss_pred             CCcCCcceEEEecCCCEEEEe-cCCeEEEEEcCCceEEeeeec-------CccccCeEECCC-CcEEEE-ECCC-cEEEE
Q 017317           74 GILNGPEDVCVDRNGVLYTAT-RDGWIKRLHKNGTWENWKLIG-------GDTLLGITTTQE-NEILVC-DADK-GLLKV  142 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~-------~~p~~gl~~d~~-g~L~va-~~~~-gl~~~  142 (373)
                      |.|..|.+|++|++|+|||++ .+.+|.+++++|++.......       ..|. +++++.+ +..+++ +... .+..+
T Consensus        20 g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          20 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccc-cccccccccccceeccCCccccccc
Confidence            458899999999999999876 678999999989754332211       2456 6776544 444444 3322 45555


Q ss_pred             ecCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe--ecCCCC
Q 017317          143 TEEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSLFF  219 (373)
Q Consensus       143 ~~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~  219 (373)
                      +.+| .....   .......+.+++++++|++|+++..                 .+.++++++++.....+  ...+..
T Consensus        99 ~~~g~~~~~~---~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~~  158 (279)
T d1q7fa_          99 NQYGQFVRKF---GATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLEF  158 (279)
T ss_dssp             CTTSCEEEEE---CTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCSS
T ss_pred             cccccceeec---CCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeecccccccccc
Confidence            5666 32221   2233457889999999999999864                 46899999886544443  234677


Q ss_pred             cceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHH
Q 017317          220 ANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKAT  298 (373)
Q Consensus       220 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~  298 (373)
                      +.+++++++++ +|+++...++|++|+.+|...   ..+.. .....|.+|++|++|+|||+.....             
T Consensus       159 ~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~~---~~~g~~g~~~~P~giavD~~G~i~Vad~~~~-------------  221 (279)
T d1q7fa_         159 PNGVVVNDKQE-IFISDNRAHCVKVFNYEGQYL---RQIGGEGITNYPIGVGINSNGEILIADNHNN-------------  221 (279)
T ss_dssp             EEEEEECSSSE-EEEEEGGGTEEEEEETTCCEE---EEESCTTTSCSEEEEEECTTCCEEEEECSSS-------------
T ss_pred             cceeeecccee-EEeeeccccceeeeecCCcee---eeecccccccCCcccccccCCeEEEEECCCC-------------
Confidence            89999999986 999999999999999776422   22221 2234699999999999999976431             


Q ss_pred             HHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEeeCC
Q 017317          299 KHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~  371 (373)
                                          ..+..|+++|+.+..+.....  ...+..+... +|+||+.+ .+++|.+++..
T Consensus       222 --------------------~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~~  272 (279)
T d1q7fa_         222 --------------------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRYV  272 (279)
T ss_dssp             --------------------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEECS
T ss_pred             --------------------cEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEee
Confidence                                247889999999888754332  2346676655 68999998 57889988753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=8.6e-18  Score=147.08  Aligned_cols=186  Identities=14%  Similarity=0.209  Sum_probs=137.5

Q ss_pred             CCcCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEee--eecCccccCeEECCCCcEEEEECCC-cEEEEecCC-cEE
Q 017317           74 GILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWK--LIGGDTLLGITTTQENEILVCDADK-GLLKVTEEG-VTV  149 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~--~~~~~p~~gl~~d~~g~L~va~~~~-gl~~~~~~g-~~~  149 (373)
                      +.+..|++|+++++|+||+++..+.++++..++......  .....|. +++++++|++|+++... .+++++..+ ...
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-cccccccceeEeeccccccccccccccceee
Confidence            346789999999999999988888887777544332222  2235788 99999999999998653 466666444 322


Q ss_pred             EeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~d  228 (373)
                      ...   ...+..|.+|+++++|++|+++..                 .++|+++++++...... ...+..|.|++++++
T Consensus       133 ~~~---~~~~~~p~~i~~~~~g~~~v~~~~-----------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         133 VLP---FTGLNDPDGVAVDNSGNVYVTDTD-----------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             ECC---CCSCCSCCEEEECTTCCEEEEEGG-----------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eee---ecccCCcceeeecCCCCEeeeccc-----------------cccccccccccceeeeeeccccCCCccceeeee
Confidence            211   123467889999999999999864                 46899999886655554 356788999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      |+ |||++..+++|++|+.++..   ...+.......|.+|++|++|+|||+....
T Consensus       193 g~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         193 GT-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             CC-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ee-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            97 99999999999999865432   122221223479999999999999998764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.66  E-value=3.1e-15  Score=134.21  Aligned_cols=156  Identities=14%  Similarity=0.159  Sum_probs=120.9

Q ss_pred             cCCcceEEEecCCCEEEEec----------------CCeEEEEEcCCceEEeeeecCccccCeEECCCC-----cEEEEE
Q 017317           76 LNGPEDVCVDRNGVLYTATR----------------DGWIKRLHKNGTWENWKLIGGDTLLGITTTQEN-----EILVCD  134 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~v~~~----------------~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g-----~L~va~  134 (373)
                      +.+|.++++|++|+||+++.                .|+|++++++|+...+......|+ ||++++++     .|||++
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            55799999999999998752                357999999998877776677899 99998765     399998


Q ss_pred             CCC-cEEEEe--cCC-cE--EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCC
Q 017317          135 ADK-GLLKVT--EEG-VT--VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLN  208 (373)
Q Consensus       135 ~~~-gl~~~~--~~g-~~--~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~  208 (373)
                      ... .|++++  .+| ..  .+.....+.....|.+|++|++|+|||++..                 .++|++||++++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------CCEEEEEeCCCC
Confidence            654 478877  455 32  2222233333446889999999999999754                 478999999977


Q ss_pred             eEE-EeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          209 ETS-ILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       209 ~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +.. .+......|.+++|.+|++.|||++..+++|+++++..
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            643 34444577899999999999999999999999999753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.55  E-value=4.4e-13  Score=120.17  Aligned_cols=194  Identities=11%  Similarity=0.176  Sum_probs=130.4

Q ss_pred             CeEECCCCcEEEEECC-CcEEEEecCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCC
Q 017317          121 GITTTQENEILVCDAD-KGLLKVTEEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPH  197 (373)
Q Consensus       121 gl~~d~~g~L~va~~~-~gl~~~~~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~  197 (373)
                      |+++|++|+||+++.. +.|+++++++  .........    ..|++|++++||++|+++...             ....
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----~~p~gla~~~dG~l~va~~~~-------------~~~~  106 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGD-------------FKST  106 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTT-------------SSSC
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC----CCeeEEEECCCCCEEEEecCC-------------Cccc
Confidence            9999999999999865 4588998544  333222211    357899999999999997431             1234


Q ss_pred             ceEEEEeCCCCeEEEeec---CCCCcceEEEccCCCEEEEEeCCC------CeEEEEEecCCCCcceeEEecCCCCCCCc
Q 017317          198 GKLLKYDPSLNETSILLD---SLFFANGVALSKDEDYLVVCETFK------FRCLKYWLKGESKEQTEIFVENLPGGPDN  268 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~---~~~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~  268 (373)
                      +.++.++..++.......   ....+|.++++++|+ +|+++...      ..+++++.++..   ....... ...|++
T Consensus       107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~-~~~pnG  181 (319)
T d2dg1a1         107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQN-ISVANG  181 (319)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEE-ESSEEE
T ss_pred             eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeec-cceeee
Confidence            689999988776655443   345689999999998 99998653      347777655432   2222222 246999


Q ss_pred             eeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEE--CCCCcEEEEE-----eCCCCc
Q 017317          269 IKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNV--AANGIVIRKF-----EDPNGK  340 (373)
Q Consensus       269 i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~--~~~g~~~~~~-----~~~~g~  340 (373)
                      +++++||+ ||++....+                                  .|.+|  +.+|......     ....+ 
T Consensus       182 ia~s~dg~~lyvad~~~~----------------------------------~I~~~d~~~~g~~~~~~~~~~~~~~~~-  226 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTAN----------------------------------RLHRIALEDDGVTIQPFGATIPYYFTG-  226 (319)
T ss_dssp             EEECTTSSEEEEEEGGGT----------------------------------EEEEEEECTTSSSEEEEEEEEEEECCS-
T ss_pred             eeeccccceEEEecccCC----------------------------------ceEEEEEcCCCceeccccceeeeccCC-
Confidence            99999996 899976542                                  24444  4555433211     11111 


Q ss_pred             eecceeEEEEe-CCEEEEeeCCCCeEEEeeCCC
Q 017317          341 VMSFVTSALEF-DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       341 ~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~l~~  372 (373)
                       ...+..++.+ +|+||++...+..|.+++...
T Consensus       227 -~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         227 -HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             -SSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             -ccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence             1235666665 689999999999999998653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=3.8e-13  Score=118.21  Aligned_cols=184  Identities=14%  Similarity=0.187  Sum_probs=130.3

Q ss_pred             CcCCcceEEEec-CCCEEEEe--cCCeEEEEEcCCceEEeee--ecCccccCeEECCCCcEEEEECCCc-EEEEecCC--
Q 017317           75 ILNGPEDVCVDR-NGVLYTAT--RDGWIKRLHKNGTWENWKL--IGGDTLLGITTTQENEILVCDADKG-LLKVTEEG--  146 (373)
Q Consensus        75 ~~~~P~~ia~d~-~G~l~v~~--~~g~I~~~~~~g~~~~~~~--~~~~p~~gl~~d~~g~L~va~~~~g-l~~~~~~g--  146 (373)
                      ....|..++++. .+..++..  .++.|.+++.+|+......  ....|. +++++++|++|+++...+ +..++++|  
T Consensus        68 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~-~~avd~~G~i~v~~~~~~~~~~~~~~g~~  146 (279)
T d1q7fa_          68 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNV  146 (279)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             cccccccccccccccccceeccCCccccccccccccceeecCCCcccccc-eeccccCCcEEEEeeccceeeEeccCCce
Confidence            355788888776 45555433  4568888888887544322  235688 999999999999987644 66777666  


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec--CCCCcceEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD--SLFFANGVA  224 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~--~~~~~~gi~  224 (373)
                      ...+..   ...+..+.+++++++|++|+++..                 .+.|++||+++.....+..  .+..|.||+
T Consensus       147 ~~~~g~---~~~~~~~~~i~~d~~g~i~v~d~~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~gia  206 (279)
T d1q7fa_         147 LHKFGC---SKHLEFPNGVVVNDKQEIFISDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVG  206 (279)
T ss_dssp             EEEEEC---TTTCSSEEEEEECSSSEEEEEEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEE
T ss_pred             eecccc---cccccccceeeeccceeEEeeecc-----------------ccceeeeecCCceeeeecccccccCCcccc
Confidence            333322   233567889999999999999864                 4689999988655544432  467799999


Q ss_pred             EccCCCEEEEEeCCC-CeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCEEEEEec
Q 017317          225 LSKDEDYLVVCETFK-FRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ++++|+ +||++..+ .+|.+|+.+|.-   ...+.. .....|.++++++||+|||+...
T Consensus       207 vD~~G~-i~Vad~~~~~~v~~f~~~G~~---~~~~~~~~~~~~p~~vav~~dG~l~V~~~n  263 (279)
T d1q7fa_         207 INSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASKD  263 (279)
T ss_dssp             ECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             cccCCe-EEEEECCCCcEEEEECCCCCE---EEEEeCCCCCCCEeEEEEeCCCcEEEEeCC
Confidence            999998 99999754 478888755531   122222 22347899999999999998754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.4e-12  Score=110.89  Aligned_cols=182  Identities=15%  Similarity=0.115  Sum_probs=131.6

Q ss_pred             CcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-eEEee-eecCccccCeEECC-CCcEEEEECCC-cEEEEecCC--cEE
Q 017317           78 GPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-WENWK-LIGGDTLLGITTTQ-ENEILVCDADK-GLLKVTEEG--VTV  149 (373)
Q Consensus        78 ~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-~~~~~-~~~~~p~~gl~~d~-~g~L~va~~~~-gl~~~~~~g--~~~  149 (373)
                      .+.+|++|. ++.||..+ ..+.|.+.+.+|. .+.+. .....|. +|++|. .++||+++... .|.+.+.+|  .+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            356788886 77888655 6788999986653 33333 3346789 999994 66899998754 566666555  444


Q ss_pred             EeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEcc
Q 017317          150 LASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSK  227 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~  227 (373)
                      +...    ....|.+|++|| .|.+|+++.+               ...++|++.+.++...+. +..++..|+|+++++
T Consensus       116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         116 LFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             Eecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            4332    234688999997 5689999754               124579999988665444 346788999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .++.|||++...+.|.+++++|..   .+.....+ ..|.+++++ +++||++.+..
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~-~~P~~lav~-~~~lYwtd~~~  228 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGL-QYPFAVTSY-GKNLYYTDWKT  228 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEE---EEEEEECC-CSEEEEEEE-TTEEEEEETTT
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCC---eEEEECCC-CCcEEEEEE-CCEEEEEECCC
Confidence            989999999999999999987642   22333333 368899997 67899998765

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6e-12  Score=109.58  Aligned_cols=184  Identities=11%  Similarity=0.104  Sum_probs=131.0

Q ss_pred             cCCcceEEEec-CCCEEEEe-cCCeEEEEEcCCc-----e-EEeeeecCccccCeEECC-CCcEEEEECCCc-EEEEecC
Q 017317           76 LNGPEDVCVDR-NGVLYTAT-RDGWIKRLHKNGT-----W-ENWKLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVTEE  145 (373)
Q Consensus        76 ~~~P~~ia~d~-~G~l~v~~-~~g~I~~~~~~g~-----~-~~~~~~~~~p~~gl~~d~-~g~L~va~~~~g-l~~~~~~  145 (373)
                      +..|.+|.+|. .+.||..+ ..+.|.+.+.+|.     . +........|. ||++|. .++||+++...+ |...+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            57788899997 67788655 6788988875441     2 22233346788 999994 668999987654 5566655


Q ss_pred             C--cEEEeeccCCccccccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cCCCCcc
Q 017317          146 G--VTVLASHVNGSRINLADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DSLFFAN  221 (373)
Q Consensus       146 g--~~~l~~~~~~~~~~~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~~~~~~  221 (373)
                      |  ...+...    ....|.+|++|+ +|.||+++.+                ..++|++.+.++...+.+. ..+..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CceEEEEEcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceee
Confidence            6  3333321    234688999997 6899999854                2468999999876666554 5678899


Q ss_pred             eEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCC--CCCCCceeECCCCCEEEEEecC
Q 017317          222 GVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENL--PGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       222 gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      |+++++.++.|||++...+.|.+++++|...   ..+....  ...|.+++++ +++||++....
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~---~~~~~~~~~~~~p~~lav~-~~~ly~td~~~  228 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCE---EEEEeCCCcccccEEEEEE-CCEEEEEECCC
Confidence            9999999999999999999999999887532   2222222  2357789998 57899998754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-11  Score=106.92  Aligned_cols=221  Identities=14%  Similarity=0.128  Sum_probs=150.9

Q ss_pred             EEEEecCCeEEEEEcCC-ceEEeeeecCccccCeEECC-CCcEEEEECCCc-EEEEecCC------cEEEeeccCCcccc
Q 017317           90 LYTATRDGWIKRLHKNG-TWENWKLIGGDTLLGITTTQ-ENEILVCDADKG-LLKVTEEG------VTVLASHVNGSRIN  160 (373)
Q Consensus        90 l~v~~~~g~I~~~~~~g-~~~~~~~~~~~p~~gl~~d~-~g~L~va~~~~g-l~~~~~~g------~~~l~~~~~~~~~~  160 (373)
                      |+++.. ..|.+++.++ +...+......+. +|.+|. .+.||.++...+ |.+.+-++      .+.+..    ....
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~~~~~~~~~~~-~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----~~~~   77 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQ   77 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCS
T ss_pred             EEEECC-CeEEEEECCCCcceeeeCCCCceE-EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----CCCC
Confidence            445443 3588888555 3444444456778 899885 557999986544 66665222      222221    2234


Q ss_pred             ccceeEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEeCC
Q 017317          161 LADDLIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDSLFFANGVALSKDEDYLVVCETF  238 (373)
Q Consensus       161 ~~~~l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~  238 (373)
                      .|.+|++|. .++||+++..                 .+.|.+++.++..... +......|.++++++....|||++.+
T Consensus        78 ~p~glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~  140 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG  140 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred             CcceEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC
Confidence            688999996 5689999864                 4689999988665544 45567889999999988889999976


Q ss_pred             C-CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCC
Q 017317          239 K-FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLH  316 (373)
Q Consensus       239 ~-~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  316 (373)
                      . .+|++.+++|...   ..+....-..|.++++|..+ +||++....                                
T Consensus       141 ~~~~I~r~~~dGs~~---~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~--------------------------------  185 (266)
T d1ijqa1         141 TPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKL--------------------------------  185 (266)
T ss_dssp             SSCEEEEEETTSCCE---EEEECSSCSCEEEEEEETTTTEEEEEETTT--------------------------------
T ss_pred             CCcceeEeccCCCce---ecccccccceeeEEEeeccccEEEEecCCc--------------------------------
Confidence            4 5899999887532   23332333579999999755 688886543                                


Q ss_pred             ccEEEEEECCCCcEEEEE-eCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          317 KKAAVVNVAANGIVIRKF-EDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       317 ~~g~v~~~~~~g~~~~~~-~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                        +.|.+++.+|+....+ ....+  ...+.++...+++||......+.|.+++...
T Consensus       186 --~~I~~~~~dG~~~~~~~~~~~~--~~~p~~lav~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         186 --HSISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             --TEEEEEETTSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             --CEEEEEECCCCCEEEEEeCCCc--ccccEEEEEECCEEEEEECCCCeEEEEECCC
Confidence              2477888888643333 33332  3456777777899999999999999998653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2e-11  Score=105.99  Aligned_cols=214  Identities=12%  Similarity=0.142  Sum_probs=148.7

Q ss_pred             CCeEEEEEcCCce-------EEeeeecCccccCeEEC-CCCcEEEEECCCc-EEEEecCC--cEEEeeccCCccccccce
Q 017317           96 DGWIKRLHKNGTW-------ENWKLIGGDTLLGITTT-QENEILVCDADKG-LLKVTEEG--VTVLASHVNGSRINLADD  164 (373)
Q Consensus        96 ~g~I~~~~~~g~~-------~~~~~~~~~p~~gl~~d-~~g~L~va~~~~g-l~~~~~~g--~~~l~~~~~~~~~~~~~~  164 (373)
                      .+.|.++..++..       .........+. +|++| .++.||+++...+ |.+.+-+|  .+.+...    ....|.+
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~-~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----~~~~p~~   83 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----DLGSPEG   83 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----TCCCEEE
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEE-EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----ccccccE
Confidence            4578888755421       11222233466 89998 4567999987654 77777333  5544332    2346889


Q ss_pred             eEEcC-CCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEEEeCCC--C
Q 017317          165 LIAAT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL-LDSLFFANGVALSKDEDYLVVCETFK--F  240 (373)
Q Consensus       165 l~~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~-~~~~~~~~gi~~~~dg~~l~v~~~~~--~  240 (373)
                      |++|. .++||+++..                 .++|.+++.++...+.+ ...+..|.+++++|....+||++.+.  .
T Consensus        84 iAvD~~~~~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~  146 (263)
T d1npea_          84 IALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNP  146 (263)
T ss_dssp             EEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred             EEEeccCCeEEEeccC-----------------CCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCc
Confidence            99995 6789999864                 46899999886665544 35578899999999999999998764  3


Q ss_pred             eEEEEEecCCCCcceeEEecCCCCCCCceeECCCC-CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccE
Q 017317          241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDG-SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKA  319 (373)
Q Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG-~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g  319 (373)
                      +|++.+++|...   ..+....-..|.++++|..+ +||++....                                  +
T Consensus       147 ~I~r~~~dG~~~---~~i~~~~~~~P~glaiD~~~~~lYw~d~~~----------------------------------~  189 (263)
T d1npea_         147 KIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAGT----------------------------------H  189 (263)
T ss_dssp             EEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETTT----------------------------------T
T ss_pred             EEEEecCCCCCc---eeeeeecccccceEEEeecCcEEEEEeCCC----------------------------------C
Confidence            699999887532   22232233578999999765 688887543                                  2


Q ss_pred             EEEEECCCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          320 AVVNVAANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       320 ~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      .|.+++.+|...+.+-.  +.  ..+.++...+++||.....++.|.+++...
T Consensus       190 ~I~~~~~~g~~~~~v~~--~~--~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         190 RAECLNPAQPGRRKVLE--GL--QYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EEEEEETTEEEEEEEEE--CC--CSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEECCCCCeEEEEC--CC--CCcEEEEEECCEEEEEECCCCEEEEEECCC
Confidence            47888888876655432  22  345677777899999999999999998763

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.39  E-value=1.6e-11  Score=108.91  Aligned_cols=159  Identities=16%  Similarity=0.162  Sum_probs=114.8

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  239 (373)
                      .++.++++++||+|||++..                 .++|+++++++ +.+.+......|+++++++||+ +|+++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~-----------------~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHE-----------------VGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCC-----------------CCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            35789999999999999864                 47999999984 5556666667899999999998 99999888


Q ss_pred             CeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCcc
Q 017317          240 FRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKK  318 (373)
Q Consensus       240 ~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  318 (373)
                      +.+.+++..+.. +....... .....+++++++++|++|++....                                  
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~----------------------------------  133 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYR----------------------------------  133 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTT----------------------------------
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeecccc----------------------------------
Confidence            888888776532 22223322 223468899999999999997643                                  


Q ss_pred             EEEEEECCCCcEEEEE-eCCCC------ceecceeEEEEeCCEEEEeeCCCCeEEEeeCCC
Q 017317          319 AAVVNVAANGIVIRKF-EDPNG------KVMSFVTSALEFDDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       319 g~v~~~~~~g~~~~~~-~~~~g------~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      +.+.++++++.....+ .++..      ........+..++++||++....+.|.++++..
T Consensus       134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~  194 (302)
T d2p4oa1         134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDS  194 (302)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred             ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccc
Confidence            2467777665554433 22111      112234456667889999999999999998764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.34  E-value=5.5e-09  Score=90.61  Aligned_cols=232  Identities=11%  Similarity=0.124  Sum_probs=152.9

Q ss_pred             CCcceEEEecCCC-EEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcE-EEEe-cCC-cEE
Q 017317           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGL-LKVT-EEG-VTV  149 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl-~~~~-~~g-~~~  149 (373)
                      ..|.+++++++|+ ||++. .++.|..+| .+++..........|. +++++++|. ++++...... ..++ .++ ...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecccccceeee
Confidence            5699999999887 67655 678999999 4555433334456788 999999986 5555544444 4444 444 222


Q ss_pred             EeeccCCccccccceeEEcCCCcE-EEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccC
Q 017317          150 LASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKD  228 (373)
Q Consensus       150 l~~~~~~~~~~~~~~l~~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~d  228 (373)
                      ....     ...+..++++++|.. +++...                 ...+..++..+.+..........|..++++++
T Consensus       111 ~~~~-----~~~~~~~~~~~dg~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (301)
T d1l0qa2         111 TVKT-----GKSPLGLALSPDGKKLYVTNNG-----------------DKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (301)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             eccc-----cccceEEEeecCCCeeeeeecc-----------------ccceeeeeccccceeeecccCCCceEEEeecc
Confidence            2111     124568899999964 444432                 35677788877776665566677889999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcch
Q 017317          229 EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPK  307 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~  307 (373)
                      ++.+|++......+..++.....  .....  .....|.+++++.+|+ +|++.....                      
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~~----------------------  222 (301)
T d1l0qa2         169 GTKVYVANFDSMSISVIDTVTNS--VIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKY----------------------  222 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE--EEEEE--ECSSEEEEEEECTTSSEEEEEEECSS----------------------
T ss_pred             ccceeeeccccccccccccccee--eeecc--cccCCcceeeccccccccccccccce----------------------
Confidence            99999998877777766643321  11111  2334678899999996 566654431                      


Q ss_pred             hhhhccCCCccEEEEEECC-CCcEEEEEeCCCCceecceeEEEEe-C-CEEEEeeCCCCeEEEeeCCC
Q 017317          308 LIKLVAPLHKKAAVVNVAA-NGIVIRKFEDPNGKVMSFVTSALEF-D-DHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       308 ~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~vgs~~~~~i~~~~l~~  372 (373)
                                .+.+..+|. +++.+..+...     ..+..+..+ + .+||+++...+.|..+++..
T Consensus       223 ----------~~~v~v~D~~t~~~~~~~~~~-----~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         223 ----------FNTVSMIDTGTNKITARIPVG-----PDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             ----------CCEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ----------eeeeeeeecCCCeEEEEEcCC-----CCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                      124666774 56666666532     235677765 3 47999988888999998763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.32  E-value=6.8e-11  Score=104.40  Aligned_cols=176  Identities=12%  Similarity=0.139  Sum_probs=122.5

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeee-----cCccccCeEECCCCcEEEEECC------C-cEEEEe
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLI-----GGDTLLGITTTQENEILVCDAD------K-GLLKVT  143 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~-----~~~p~~gl~~d~~g~L~va~~~------~-gl~~~~  143 (373)
                      ..|.+++.+++|++|+++.+ +|++++ .+|+++.+...     ..+++ .+.+|++|++|+++..      . .++++ 
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~n-d~~vd~~G~iw~~~~~~~~~~~~g~l~~~-  135 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHV-  135 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEE-
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccce-eeEECCCCCEEEEeccccccccceeEeee-
Confidence            45788999999999998864 699999 56777766542     12467 8899999999998632      1 24444 


Q ss_pred             cCC-cEEEeeccCCccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCC--C----eEEEee-
Q 017317          144 EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSL--N----ETSILL-  214 (373)
Q Consensus       144 ~~g-~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~--~----~~~~~~-  214 (373)
                      .+| .+.+..     .+..+|++++++++ .+|++++.                 .+.|++|+.+.  +    +..... 
T Consensus       136 ~~g~~~~~~~-----~~~~~Ng~~~s~d~~~l~~~dt~-----------------~~~I~~~~~d~~~~~~~~~~~~~~~  193 (295)
T d2ghsa1         136 AKGKVTKLFA-----DISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRVPLDARTGLPTGKAEVFID  193 (295)
T ss_dssp             ETTEEEEEEE-----EESSEEEEEECTTSCEEEEEETT-----------------TCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             cCCcEEEEee-----ccCCcceeeecCCCceEEEeecc-----------------cceeeEeeecccccccccceEEEec
Confidence            345 444433     23468999999998 58999874                 47888886432  1    122222 


Q ss_pred             --cCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCC-CCCCceeEC-CCC-CEEEEEec
Q 017317          215 --DSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLP-GGPDNIKLA-PDG-SFWIAILQ  283 (373)
Q Consensus       215 --~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d-~dG-~lwva~~~  283 (373)
                        .....|.|++++.+|+ ||++....++|.+|+.+|.....   +  .+| ..|.++++. +|+ .|||++..
T Consensus       194 ~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~~~~---i--~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         194 STGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHIAR---Y--EVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             CTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEEEE---E--ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCcEeeE---e--cCCCCceEEEEEeCCCCCEEEEEECC
Confidence              2345689999999998 99999888999999976643222   2  123 357888885 454 59998764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.23  E-value=2.4e-09  Score=99.80  Aligned_cols=171  Identities=15%  Similarity=0.181  Sum_probs=110.7

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEEEEec-CCeEEEEE-cCCceEEeeeec---------CccccCeEECCC----CcEE
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLYTATR-DGWIKRLH-KNGTWENWKLIG---------GDTLLGITTTQE----NEIL  131 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~v~~~-~g~I~~~~-~~g~~~~~~~~~---------~~p~~gl~~d~~----g~L~  131 (373)
                      +++.++++ +..|++|++.++|+|||... .|+|++++ .+++.+.+....         +..+ +|+++++    +.+|
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEE
Confidence            67788888 89999999999999999985 69999998 455554443221         2345 7898864    6788


Q ss_pred             EEEC---------C--C--cEEEEe-c-CC--c---EEEeeccCCccccccceeEEcCCCcEEEEeCCcccccccc--c-
Q 017317          132 VCDA---------D--K--GLLKVT-E-EG--V---TVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNW--G-  188 (373)
Q Consensus       132 va~~---------~--~--gl~~~~-~-~g--~---~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~--~-  188 (373)
                      ++-.         .  .  -+.++. . +.  .   +.+.........+....|++++||.|||+.+.........  . 
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence            8621         0  0  123333 2 21  1   2233333334446677899999999999976421110000  0 


Q ss_pred             ---------cc---cccccCCceEEEEeCCCCe-----------EEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          189 ---------LD---LLEAKPHGKLLKYDPSLNE-----------TSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       189 ---------~~---~~~~~~~g~l~~~d~~~~~-----------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                               ..   .......|.|+|+++++..           .+.++.++++|.|++|+++|+ ||++|.+..
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G~~  249 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccccc
Confidence                     00   0011335899999987543           245788999999999999887 999987643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.21  E-value=1.3e-08  Score=92.09  Aligned_cols=247  Identities=12%  Similarity=0.080  Sum_probs=142.7

Q ss_pred             CCcceEEEecCCC-EEEEecCCeEEEEE--cCCceEEe--eeecCccccCeEECCCCc-EEEEECC---CcEEEEe--cC
Q 017317           77 NGPEDVCVDRNGV-LYTATRDGWIKRLH--KNGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD---KGLLKVT--EE  145 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~~~g~I~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~g~-L~va~~~---~gl~~~~--~~  145 (373)
                      ..|..|+++++|+ ||+.+ .+.+..+.  .++.....  ......|. .++++++|+ +|++...   ..+..+.  .+
T Consensus        40 ~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            3467899999776 56654 35565544  55544322  22356788 999999885 5665432   1233322  22


Q ss_pred             C--cEEEee-----------ccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeC-CCCeE
Q 017317          146 G--VTVLAS-----------HVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP-SLNET  210 (373)
Q Consensus       146 g--~~~l~~-----------~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~-~~~~~  210 (373)
                      +  ......           ...-.....+..++++|||+ +|+++.+                 ...|+.|+. .++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~  180 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEV  180 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCce
Confidence            2  111110           00001123567899999995 8888754                 245665542 22333


Q ss_pred             EEe-----ecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec---CCC-------------CCCCce
Q 017317          211 SIL-----LDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE---NLP-------------GGPDNI  269 (373)
Q Consensus       211 ~~~-----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~-------------g~p~~i  269 (373)
                      ...     ......|.+++++||++.+|+++...+.|..|+.+..+.........   ...             ..+..+
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            221     12345788999999999999999999999999987654322111110   000             124458


Q ss_pred             eECCCCC-EEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEE---eC-CCCceecc
Q 017317          270 KLAPDGS-FWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKF---ED-PNGKVMSF  344 (373)
Q Consensus       270 ~~d~dG~-lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~---~~-~~g~~~~~  344 (373)
                      .+++||+ +|++.++....                           .......++++.+|......   .. ..|.   .
T Consensus       261 ~~spdG~~lyvsnr~~~~~---------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~  310 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---H  310 (365)
T ss_dssp             EECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCCT---T
T ss_pred             EECCCCCEEEEEcccCCCc---------------------------cceEEEEEEecCCCceeeEeEeeEEEcCCC---C
Confidence            8999997 67776543110                           11123356667777654322   22 2232   3


Q ss_pred             eeEEEEe---CCEEEEeeCCCCeEEEeeCCC
Q 017317          345 VTSALEF---DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       345 ~~~~~~~---~g~L~vgs~~~~~i~~~~l~~  372 (373)
                      +..+...   +..||+++..++.|..++++.
T Consensus       311 p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            4455543   357999999999999998653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=6.5e-08  Score=84.97  Aligned_cols=240  Identities=13%  Similarity=0.119  Sum_probs=138.2

Q ss_pred             CCcceEEEecCCC-EEEEe-cCCeEEEEE--cCC-ceEEe--eeecCccccCeEECCCCc-EEEEECCCcE-EEEe-cCC
Q 017317           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH--KNG-TWENW--KLIGGDTLLGITTTQENE-ILVCDADKGL-LKVT-EEG  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~--~~g-~~~~~--~~~~~~p~~gl~~d~~g~-L~va~~~~gl-~~~~-~~g  146 (373)
                      ..|.+|++.|||+ ||++. .++.|..++  .++ ..+..  ......|. ++++++||+ ||++....+. ..++ ...
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCceeeeccccc
Confidence            5689999999987 67766 478887776  222 22322  22345688 999999996 7888765443 3344 333


Q ss_pred             -cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEE-----eecCC
Q 017317          147 -VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSI-----LLDSL  217 (373)
Q Consensus       147 -~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~-----~~~~~  217 (373)
                       .........  ....+.++.+++||+ +++++..                 ...+..++..+..  ...     .....
T Consensus       116 ~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_         116 LPVGVVDVVE--GLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             cceecccccC--CCccceEEEeeecceeeeccccc-----------------cceeeEEEeccCCcceeeeceeeeeecC
Confidence             222222111  123567889999996 5555432                 2345555543221  111     11224


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCC--cceeEEecC-----CCCCCCceeECCCCCE-EEEEecCCCchh
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK--EQTEIFVEN-----LPGGPDNIKLAPDGSF-WIAILQLSSPGL  289 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~~-----~~g~p~~i~~d~dG~l-wva~~~~~~~~~  289 (373)
                      ..|..+++++++..+|++....+....+.......  .........     ....+..++++++|++ |++....     
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-----  251 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----  251 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----
T ss_pred             CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC-----
Confidence            56788999999999999988877777776543221  111111110     1123555778899974 5444332     


Q ss_pred             hhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEe-CCCCceecceeEEEEe--CCEEEEeeCCCCeEE
Q 017317          290 EFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFE-DPNGKVMSFVTSALEF--DDHLYLGSLNTNFIG  366 (373)
Q Consensus       290 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~-~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~  366 (373)
                                                 ....++.++.+++...... .+.+   ..+..+...  +.+||+++..++.|.
T Consensus       252 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         252 ---------------------------SLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             ---------------------------TEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             ---------------------------CeEEEEEEcCCCCEEEEEEEeCCC---CCeeEEEEeCCCCEEEEEECCCCeEE
Confidence                                       1223556666665443322 1222   234555554  346999988888888


Q ss_pred             EeeCC
Q 017317          367 KLPLK  371 (373)
Q Consensus       367 ~~~l~  371 (373)
                      +++++
T Consensus       302 v~~id  306 (333)
T d1ri6a_         302 VYEIV  306 (333)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.08  E-value=1.4e-07  Score=81.43  Aligned_cols=167  Identities=16%  Similarity=0.227  Sum_probs=115.0

Q ss_pred             CEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC--cEEEeeccCCccccc
Q 017317           89 VLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG--VTVLASHVNGSRINL  161 (373)
Q Consensus        89 ~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g--~~~l~~~~~~~~~~~  161 (373)
                      .+||+. .++.|..+| .+++..........|. ++++++||+ ||++... +.|..+| .++  ...+..      ...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~------~~~   75 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSS   75 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSS
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec------ccc
Confidence            468654 778999999 6676555445567899 999999996 7787654 4577888 566  232211      134


Q ss_pred             cceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC
Q 017317          162 ADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF  240 (373)
Q Consensus       162 ~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  240 (373)
                      +..++++++|. ++++...                 ...+..++..+++..........+..+++++|++.++++.....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~  138 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK  138 (301)
T ss_dssp             EEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccccccccccccccccc-----------------cceeeecccccceeeeeccccccceEEEeecCCCeeeeeecccc
Confidence            67899999986 5555432                 35678888887776666666677889999999999999888777


Q ss_pred             eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEec
Q 017317          241 RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQ  283 (373)
Q Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~  283 (373)
                      .+..++.....  ....+  .....|..++++++++ +|++...
T Consensus       139 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         139 TVSVINTVTKA--VINTV--SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEEETTTTE--EEEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             ceeeeeccccc--eeeec--ccCCCceEEEeeccccceeeeccc
Confidence            78777754321  11122  1233577788888886 5666544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=4e-07  Score=79.71  Aligned_cols=173  Identities=12%  Similarity=0.109  Sum_probs=109.1

Q ss_pred             CEEEEe-cCCeEEEEE--cCCceEEe--eeecCccccCeEECCCCc-EEEEECC-CcEEEEe-c-CC--cEEEeeccCCc
Q 017317           89 VLYTAT-RDGWIKRLH--KNGTWENW--KLIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-E-EG--VTVLASHVNGS  157 (373)
Q Consensus        89 ~l~v~~-~~g~I~~~~--~~g~~~~~--~~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~-~g--~~~l~~~~~~~  157 (373)
                      .+|+++ .++.|..++  .++..+.+  ....+.+. +|++++||+ ||++... +.|..++ . .+  .+.......  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~--   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc--
Confidence            578766 778888887  34544433  34567788 999999996 7888764 4455555 3 33  333322211  


Q ss_pred             cccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE---eecCCCCcceEEEccCCCEEE
Q 017317          158 RINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI---LLDSLFFANGVALSKDEDYLV  233 (373)
Q Consensus       158 ~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~---~~~~~~~~~gi~~~~dg~~l~  233 (373)
                       ...+..+++++||+ ||+++..                 .+.+..++.+......   .......+.++.+++|++.++
T Consensus        82 -~~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~  143 (333)
T d1ri6a_          82 -PGSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW  143 (333)
T ss_dssp             -SSCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred             -CCCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence             13577899999995 7777542                 2455555444333222   234456688999999999999


Q ss_pred             EEeCCCCeEEEEEecCCCCccee---EEecCCCCCCCceeECCCCCEEEEEe
Q 017317          234 VCETFKFRCLKYWLKGESKEQTE---IFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      +++.....+..|+..........   .........|..+++++++.......
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec
Confidence            99988888999887543221111   11112234678899999987655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.89  E-value=1.2e-06  Score=78.98  Aligned_cols=187  Identities=14%  Similarity=0.078  Sum_probs=105.5

Q ss_pred             CEEEEec--CCeEEEEE---cCCceEEeee----ecCccccCeEECCCCc-EEEEECCCcEEEE--ecCC-cEEEeeccC
Q 017317           89 VLYTATR--DGWIKRLH---KNGTWENWKL----IGGDTLLGITTTQENE-ILVCDADKGLLKV--TEEG-VTVLASHVN  155 (373)
Q Consensus        89 ~l~v~~~--~g~I~~~~---~~g~~~~~~~----~~~~p~~gl~~d~~g~-L~va~~~~gl~~~--~~~g-~~~l~~~~~  155 (373)
                      .||+|+.  .+.|+.+.   ..++.+....    ....+. .|+++++++ ||++.. .++..+  ++++ .........
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s-~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~   81 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCC-EEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence            5788873  55786555   3445443322    123345 799999985 788764 445444  4444 333322222


Q ss_pred             CccccccceeEEcCCC-cEEEEeCCccccccc-cccccccccCCceEEEEeCCCCeEEEe-----ecCCCCcceEEEccC
Q 017317          156 GSRINLADDLIAATDG-SIYFSVASTKFGLHN-WGLDLLEAKPHGKLLKYDPSLNETSIL-----LDSLFFANGVALSKD  228 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~~~~~~~~-----~~~~~~~~gi~~~~d  228 (373)
                      +   ..|..++++++| .+|++...  ++... +...+......+.++.++.. ++....     ......+.+++++||
T Consensus        82 ~---~~p~~v~~~~~~~~~~v~~a~--~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~h~h~v~~sPd  155 (365)
T d1jofa_          82 G---GHPRANDADTNTRAIFLLAAK--QPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             C---SSGGGGCTTSCCEEEEEEECS--STTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             C---CCcEEEEECCCCCEEEEEEec--CCCCEEEEeEccCCCCcceeEeeeec-ceecCcccCcccCCCCcceEEEECCC
Confidence            2   256788899998 46777643  21111 11111111223445555543 222211     122345789999999


Q ss_pred             CCEEEEEeCCCCeEEEEEecCCC-CcceeEEec-CCCCCCCceeECCCCC-EEEEEec
Q 017317          229 EDYLVVCETFKFRCLKYWLKGES-KEQTEIFVE-NLPGGPDNIKLAPDGS-FWIAILQ  283 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~g~p~~i~~d~dG~-lwva~~~  283 (373)
                      |+++|+++.+.++|++|+.+... ......... .....|.+++++++|+ +|++...
T Consensus       156 G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence            99999999999999999865432 111112211 2234689999999997 4565543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.86  E-value=4.3e-07  Score=78.55  Aligned_cols=187  Identities=19%  Similarity=0.250  Sum_probs=116.7

Q ss_pred             ceeEeccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEee-ee-cCccccCeEECCCCcEEEEECCCcEEEE
Q 017317           67 SVTRLGEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWK-LI-GGDTLLGITTTQENEILVCDADKGLLKV  142 (373)
Q Consensus        67 ~~~~~~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~-~~-~~~p~~gl~~d~~g~L~va~~~~gl~~~  142 (373)
                      .+.++..|--..-.+|++.++|.+. +++.+|.|..++ .+|+..... .. ..... ++++.++|+++++.....+..+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-GIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-EEEECTTSCEEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE-EEEeeccceeecccceeeEEEe
Confidence            4566667766677889999988765 677899999999 556543332 22 22345 8899999999988776677777


Q ss_pred             e-cCC-cE---EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC
Q 017317          143 T-EEG-VT---VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (373)
Q Consensus       143 ~-~~g-~~---~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  217 (373)
                      + ... ..   .....    ....+..+++.++|.+.++...                  +.+..++..  +..... ..
T Consensus        82 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~~~~~~~------------------~~i~~~~~~--~~~~~~-~~  136 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANK----LSSQPLGLAVSADGDIAVAACY------------------KHIAIYSHG--KLTEVP-IS  136 (299)
T ss_dssp             CSSSSSSCTTSCCEEE----CSSCEEEEEECTTSSCEEEEES------------------SEEEEEETT--EEEEEE-CS
T ss_pred             ccCCcccccccccccc----cccccccccccccccccccccc------------------ccccccccc--cccccc-cc
Confidence            6 222 11   11111    1124567889999987666432                  466667643  322222 22


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      .....++++++++.+++. ..++.+..|++.+..........  .......++++++|.+.++..
T Consensus       137 ~~~~~~~~s~~~~~l~~g-~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~  198 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVG-GQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATD  198 (299)
T ss_dssp             SCEEEEEECTTSCEEEEE-ETTSEEEEEEEETTEEEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            345678999999865555 45678999988764332222221  123456688889988665543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.85  E-value=2.8e-06  Score=74.39  Aligned_cols=234  Identities=12%  Similarity=0.048  Sum_probs=139.3

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCc--eEE-eeeecCccccCeEECCCCcEEEEECC--Cc-EEEEe-cCC
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGT--WEN-WKLIGGDTLLGITTTQENEILVCDAD--KG-LLKVT-EEG  146 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~--~~~-~~~~~~~p~~gl~~d~~g~L~va~~~--~g-l~~~~-~~g  146 (373)
                      -..-.++++.|+|++. +|+.+|.|..++ ..++  ... +....+... .+++.++|+++++...  .. +..++ +.+
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~  136 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTG  136 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred             CCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-cccccccccccccccccccccccccccccc
Confidence            3456778899998877 677899999998 3332  222 222234455 8999999986654322  12 33444 444


Q ss_pred             --cEEEeeccCCccccccceeEEcCCCcE-EEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcce
Q 017317          147 --VTVLASHVNGSRINLADDLIAATDGSI-YFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANG  222 (373)
Q Consensus       147 --~~~l~~~~~~~~~~~~~~l~~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~g  222 (373)
                        ...+    .+ ....+..+++.++|.. .++.+                 ..+.|..+|..+++........ .....
T Consensus       137 ~~~~~l----~~-h~~~v~~v~~~~~~~~~l~sgs-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         137 TSNGNL----TG-QARAMNSVDFKPSRPFRIISGS-----------------DDNTVAIFEGPPFKFKSTFGEHTKFVHS  194 (311)
T ss_dssp             CBCBCC----CC-CSSCEEEEEECSSSSCEEEEEE-----------------TTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             cccccc----cc-cccccccccccccceeeecccc-----------------cccccccccccccccccccccccccccc
Confidence              2222    11 1234678999999864 44432                 2467888898876655544432 33478


Q ss_pred             EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec---CCC---CCCCceeECCCCCEEEEEecCCCchhhhccCCh
Q 017317          223 VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE---NLP---GGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSK  296 (373)
Q Consensus       223 i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~---g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p  296 (373)
                      ++++|+++.++.+. .++.+..|+.....  ....+..   ...   +....++++++|++.++....            
T Consensus       195 v~~~p~~~~l~~~~-~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D------------  259 (311)
T d1nr0a1         195 VRYNPDGSLFASTG-GDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------------  259 (311)
T ss_dssp             EEECTTSSEEEEEE-TTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------------
T ss_pred             cccCcccccccccc-cccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeCC------------
Confidence            99999999555554 56678888865432  1111111   011   123457888999866654322            


Q ss_pred             HHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEeeCCCCeEEEeeCC
Q 017317          297 ATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs~~~~~i~~~~l~  371 (373)
                                            +.+..+| .+++.+..+...... ......+...++.|+.++..+ .|...+++
T Consensus       260 ----------------------g~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG-~i~~wd~d  311 (311)
T d1nr0a1         260 ----------------------KTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANG-FINFVNPE  311 (311)
T ss_dssp             ----------------------SEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTC-CEEEEETT
T ss_pred             ----------------------CeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCC-EEEEEeCC
Confidence                                  2356666 567777777654322 234456666677898888754 57777653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.83  E-value=1.3e-06  Score=80.40  Aligned_cols=176  Identities=9%  Similarity=-0.069  Sum_probs=111.8

Q ss_pred             CEEEE-ecCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEEeeccCC-cccccc
Q 017317           89 VLYTA-TRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNG-SRINLA  162 (373)
Q Consensus        89 ~l~v~-~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l~~~~~~-~~~~~~  162 (373)
                      .+++. ..+|.|..+| ..++..........|+ ++++.+||+ +|+++..+.+..+| .++ .+.......+ .+....
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            33343 3678999999 5566554444556788 999999996 77787666677888 555 3332221111 112223


Q ss_pred             ceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC------------CCCcceEEEccCC
Q 017317          163 DDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFANGVALSKDE  229 (373)
Q Consensus       163 ~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------~~~~~gi~~~~dg  229 (373)
                      ...++++||+ ||++...                 .+.+..+|..+++.......            .....++.+++||
T Consensus       112 ~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  174 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  174 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             EecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence            3345567996 6777543                 46788899888776543221            1223468889999


Q ss_pred             CEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEecC
Q 017317          230 DYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAILQL  284 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~~~  284 (373)
                      ..++++....+.+..++....+.......  .....|.++++++||++ +++....
T Consensus       175 ~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~~  228 (432)
T d1qksa2         175 PEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANAR  228 (432)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGG
T ss_pred             CEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEecccc
Confidence            99999988888999998654332222222  12346889999999984 5555443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.83  E-value=3.3e-06  Score=73.43  Aligned_cols=141  Identities=9%  Similarity=0.031  Sum_probs=91.3

Q ss_pred             CEEEEecCCeEEEEE-cCCceEEee---eecCccccCeEECCCCc-EEEEECC-CcEEEEe-cCC-c-EEEeeccCCccc
Q 017317           89 VLYTATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENE-ILVCDAD-KGLLKVT-EEG-V-TVLASHVNGSRI  159 (373)
Q Consensus        89 ~l~v~~~~g~I~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~-L~va~~~-~gl~~~~-~~g-~-~~l~~~~~~~~~  159 (373)
                      .+++++.+++|..+| .+++.....   .....|. ++++++||+ +||+... +.|..+| .++ . ..+.........
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            356777889999999 555543322   2245688 999999996 6777543 4578888 677 3 333222222233


Q ss_pred             cccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe
Q 017317          160 NLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCE  236 (373)
Q Consensus       160 ~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  236 (373)
                      ..+.++++.+||. +|++......      ...........+..+|..+++..........+.++++++||+++|++.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             cceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            4677899999985 6666432100      001111234578888988887766555667789999999999888875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.77  E-value=3.2e-06  Score=77.34  Aligned_cols=177  Identities=8%  Similarity=-0.027  Sum_probs=109.2

Q ss_pred             CCCEEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECCCcEEEEe-cCC-cEEEeeccCC-cccc
Q 017317           87 NGVLYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDADKGLLKVT-EEG-VTVLASHVNG-SRIN  160 (373)
Q Consensus        87 ~G~l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~~gl~~~~-~~g-~~~l~~~~~~-~~~~  160 (373)
                      .+.++|.. .+|.|..+| .+++..........|. ++++++||+ ||++...+.+..+| .++ .........+ .+..
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            44455544 789999999 5666544444456788 999999996 67777666677888 666 4333221111 1122


Q ss_pred             ccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC------------CCCcceEEEcc
Q 017317          161 LADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------LFFANGVALSK  227 (373)
Q Consensus       161 ~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------~~~~~gi~~~~  227 (373)
                      .+.++++.|||+ ++++...                 .+.+..+|..+++.......            ......++.++
T Consensus       110 ~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  172 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH  172 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred             eEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC
Confidence            333455667995 6776532                 35677788877765443221            11224577889


Q ss_pred             CCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          228 DEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       228 dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      |+..++++....+.+..+............ . .....|.++.++++|++++....
T Consensus       173 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         173 EHPEFIVNVKETGKVLLVNYKDIDNLTVTS-I-GAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             SSSEEEEEETTTTEEEEEECSSSSSCEEEE-E-ECCSSEEEEEECTTSCEEEEEET
T ss_pred             CCCEEEEecCCCCeEEEEEeccccceeeEE-e-ccCCccEeeeECCCCcEEEeeee
Confidence            999888888888888777654332222211 1 22345788999999987666554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.73  E-value=4.6e-06  Score=72.95  Aligned_cols=184  Identities=9%  Similarity=-0.040  Sum_probs=105.8

Q ss_pred             CcceEEEecCCCEEEEecCCeEEEEE-cCCce-EEeeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEEee
Q 017317           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTW-ENWKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~-~~~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      .|..++.+++|..++...++.|+.++ .++.. ..+........ .+++.++|++.+ +...+.|..++ .++ ..... 
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~-   96 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-   96 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeecccccccc-
Confidence            35678899988877555667788888 44433 33333234456 899999998665 45545566666 443 21111 


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCE
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDY  231 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~  231 (373)
                      ...+. ...+.++++.++|..+++.+..             ......|+  +.++++...... .......++|+|+++.
T Consensus        97 ~~~~~-~~~v~~v~~s~d~~~l~~~~~~-------------~~~~~~v~--~~~~~~~~~~l~~h~~~v~~v~~~~~~~~  160 (311)
T d1nr0a1          97 TIPVF-SGPVKDISWDSESKRIAAVGEG-------------RERFGHVF--LFDTGTSNGNLTGQARAMNSVDFKPSRPF  160 (311)
T ss_dssp             EEECS-SSCEEEEEECTTSCEEEEEECC-------------SSCSEEEE--ETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             ccccc-cCcccccccccccccccccccc-------------cccccccc--cccccccccccccccccccccccccccee
Confidence            11111 1356789999999877664320             01112344  444443222222 2233467899999997


Q ss_pred             EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEe
Q 017317          232 LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       232 l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~  282 (373)
                      ++++...++.|..|++...+   .......-......++++++|++.++..
T Consensus       161 ~l~sgs~d~~i~i~d~~~~~---~~~~~~~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         161 RIISGSDDNTVAIFEGPPFK---FKSTFGEHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             EEEEEETTSCEEEEETTTBE---EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eecccccccccccccccccc---cccccccccccccccccCcccccccccc
Confidence            77777677788888865421   1111111122345688899998766543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.7e-05  Score=69.64  Aligned_cols=225  Identities=10%  Similarity=0.004  Sum_probs=133.8

Q ss_pred             cceEEEecCCCEE-EEecCCeEEEEEcCC-ceEEe---eeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEE
Q 017317           79 PEDVCVDRNGVLY-TATRDGWIKRLHKNG-TWENW---KLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVL  150 (373)
Q Consensus        79 P~~ia~d~~G~l~-v~~~~g~I~~~~~~g-~~~~~---~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l  150 (373)
                      -.++++.++|+.. +++.+|.|..++... ..+..   ........ .+++++++.+.+ +.....+..++ .++ ....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            4678898888765 677899999998332 22211   11122334 677888887655 45545677777 555 3222


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDED  230 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~  230 (373)
                      ...    ....+..+++.++|...+..+                 ..+.+..+|..+++.............++++++++
T Consensus       179 ~~~----~~~~v~~l~~s~~~~~~~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         179 FQG----HTDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             ECC----CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccc----ccccccccccccccccccccc-----------------ccccccccccccceeecccccccceEEEEEccccc
Confidence            111    123467889999986555432                 23678888887776544333334457889999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhh
Q 017317          231 YLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIK  310 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  310 (373)
                      .++++. .++.+..+++.....  ... . ........++++++|++.++....                          
T Consensus       238 ~l~~~~-~d~~i~i~d~~~~~~--~~~-~-~~~~~i~~v~~s~~g~~l~s~s~D--------------------------  286 (337)
T d1gxra_         238 WLAVGM-ESSNVEVLHVNKPDK--YQL-H-LHESCVLSLKFAYCGKWFVSTGKD--------------------------  286 (337)
T ss_dssp             EEEEEE-TTSCEEEEETTSSCE--EEE-C-CCSSCEEEEEECTTSSEEEEEETT--------------------------
T ss_pred             ccceec-ccccccccccccccc--ccc-c-ccccccceEEECCCCCEEEEEeCC--------------------------
Confidence            666554 466788888754321  111 1 122345668889999877664432                          


Q ss_pred             hccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeCCCCeEEEeeC
Q 017317          311 LVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSLNTNFIGKLPL  370 (373)
Q Consensus       311 ~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~~~~~i~~~~l  370 (373)
                              +.+..+| .+++.+..+...     ..++.+.... + .|..|+.. ..|...+|
T Consensus       287 --------g~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~s~D-~~I~vWdl  335 (337)
T d1gxra_         287 --------NLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGSGD-KKATVYEV  335 (337)
T ss_dssp             --------SEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEETT-SCEEEEEE
T ss_pred             --------CeEEEEECCCCCEEEEccCC-----CCEEEEEEeCCCCEEEEEeCC-CeEEEEEE
Confidence                    2355666 567777665422     3466777653 4 56556543 34666553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.54  E-value=6.6e-06  Score=70.73  Aligned_cols=176  Identities=15%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEEcCCc-----eEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCC-cEEEee
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLHKNGT-----WENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEG-VTVLAS  152 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~~~g~-----~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g-~~~l~~  152 (373)
                      -.++++.++|.++++..++.+..++..+.     ..........+. ++++.++|++.++.....+..++... .+... 
T Consensus        58 v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~-  135 (299)
T d1nr0a2          58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKHIAIYSHGKLTEVPI-  135 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSEEEEEETTEEEEEEC-
T ss_pred             EEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc-cccccccccccccccccccccccccccccccc-
Confidence            46788899999998888899988873321     111112234566 88899999877765555566665222 22211 


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCC
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSLFFANGVALSKDED  230 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~~~~~gi~~~~dg~  230 (373)
                            ......+++.+++.+.++.+                 ..+.|..+|..+++....  .........++++++++
T Consensus       136 ------~~~~~~~~~s~~~~~l~~g~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  192 (299)
T d1nr0a2         136 ------SYNSSCVALSNDKQFVAVGG-----------------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA  192 (299)
T ss_dssp             ------SSCEEEEEECTTSCEEEEEE-----------------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred             ------cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccccccccc
Confidence                  12345688899987655432                 246788888766654432  12223457899999999


Q ss_pred             EEEEEeCCCCeEEEEEecCCCC-cceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          231 YLVVCETFKFRCLKYWLKGESK-EQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       231 ~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      .++.+. .++.+..|+...... .....+. .-......++++++|.+.++.
T Consensus       193 ~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         193 FLVATD-QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EEEEEE-TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccc-ccccccccccccccccccccccc-ccccccccccccccccceEEE
Confidence            666554 466788898754321 1111111 001223457788999866554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=2.3e-05  Score=68.09  Aligned_cols=146  Identities=13%  Similarity=0.118  Sum_probs=86.1

Q ss_pred             CCcceEEEecCCC-EEEEe-cCCeEEEEE-cCCceEEeeee-------cCccccCeEECCCCc-EEEEECCC--------
Q 017317           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLI-------GGDTLLGITTTQENE-ILVCDADK--------  137 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~-~~g~~~~~~~~-------~~~p~~gl~~d~~g~-L~va~~~~--------  137 (373)
                      .+|.++++++||+ +|+.. .++.|..+| .+++.......       ...|. ++++++||+ +|++....        
T Consensus        40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE-EEEEecCCCEEEEEecCCcceeeeec
Confidence            5799999999886 56655 678999999 45543322111       12467 999999995 77765321        


Q ss_pred             ----cEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317          138 ----GLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (373)
Q Consensus       138 ----gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  210 (373)
                          .+..++ .++  ...+.....   ......+...+++.+|+++                    +.+..++..+++.
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  175 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDGSLYVAG--------------------PDIYKMDVKTGKY  175 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTSCEEEES--------------------SSEEEECTTTCCE
T ss_pred             cCcceEEEEecccceeeeEEEeeec---cCceEEEEecCCCEEEEeC--------------------CcceEEEccCCCE
Confidence                122222 121  001000000   0123344556677888764                    2456677766665


Q ss_pred             EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEE
Q 017317          211 SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYW  246 (373)
Q Consensus       211 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  246 (373)
                      .........+.++.+++++..+|+.....+.+...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             EEEEecCCCccceEEeccccEEEEEecCCCceEeee
Confidence            554444556777888888887877776666665544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.49  E-value=0.00019  Score=63.63  Aligned_cols=151  Identities=8%  Similarity=0.043  Sum_probs=90.4

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeee---ecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-cEEEe
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKL---IGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~---~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-~~~l~  151 (373)
                      .+++++++|.+. ++..+|.|..++ ..++.+....   ..+... .+++++++++.+ +...+.+..++ .++ .+...
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEE-EEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            688999999877 677888898888 4455443322   123345 899999998655 44445566667 555 33222


Q ss_pred             eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe--ecCC-CCcceEEEccC
Q 017317          152 SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL--LDSL-FFANGVALSKD  228 (373)
Q Consensus       152 ~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~--~~~~-~~~~gi~~~~d  228 (373)
                      . ..+ ....+..+.++|+|+..++.+.               ...-.+|.++.........  .... .....++++|+
T Consensus        90 ~-~~~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          90 V-ILR-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             E-CCC-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             c-ccc-ccccccccccccccccceeecc---------------cCcceeeeeeccccccccccccccccccccccccccc
Confidence            1 111 1235678999999976555332               1223566676554432221  1222 23356899999


Q ss_pred             CCEEEEEeCCCCeEEEEEecC
Q 017317          229 EDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       229 g~~l~v~~~~~~~i~~~~~~~  249 (373)
                      ++.+ ++...++.+..|+...
T Consensus       153 ~~~l-~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         153 SVLL-AAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             SSEE-EEEETTSCEEEEECCC
T ss_pred             ccce-eccccCcEEEEEeecc
Confidence            9855 4444566787777643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.43  E-value=1.3e-05  Score=69.84  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             CeEECCCCcEEE-EECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCc-EEEEeCCcccccccccccccccc
Q 017317          121 GITTTQENEILV-CDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAK  195 (373)
Q Consensus       121 gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~  195 (373)
                      |+++.++|+.++ +...+.|..+| .++  ...+.  .+.  ...|.+++++|||+ +|++...                
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~--~~~--~~~p~~l~~spDG~~l~v~~~~----------------   60 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--MPD--KFGPGTAMMAPDNRTAYVLNNH----------------   60 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE--CSS--CCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE--cCC--CCCcceEEECCCCCEEEEEECC----------------
Confidence            567888887655 56666788888 666  22221  111  13578999999995 7888643                


Q ss_pred             CCceEEEEeCCCCeEEEeecC-------CCCcceEEEccCCCEEEEEeC-----------CCCeEEEEEecCCCC-ccee
Q 017317          196 PHGKLLKYDPSLNETSILLDS-------LFFANGVALSKDEDYLVVCET-----------FKFRCLKYWLKGESK-EQTE  256 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~-----------~~~~i~~~~~~~~~~-~~~~  256 (373)
                       .+.|+.+|.++++.......       ...|.++++++||+.+|++..           ....+..++....+. ....
T Consensus        61 -~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence             47899999988875533221       235789999999999999864           234555565432211 1111


Q ss_pred             EEecCCCCCCCceeECCCCCEEEEE
Q 017317          257 IFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       257 ~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      ..  ..+.....+....+|.+++..
T Consensus       140 ~~--~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         140 TF--PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             EE--ECCSSCCCEEECTTSCEEEES
T ss_pred             ee--eccCceEEEEecCCCEEEEeC
Confidence            11  112233345556777777764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=0.00028  Score=61.52  Aligned_cols=180  Identities=12%  Similarity=0.047  Sum_probs=106.7

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEEc-CC-c---eEEee--eecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC-
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLHK-NG-T---WENWK--LIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG-  146 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~~-~g-~---~~~~~--~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g-  146 (373)
                      ..-.++++.++|...+...+|.|..++. .+ .   .....  ...+... ++++.++|++.+ +...+.|..++ ... 
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~-~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEE-EEEEcCCCCEEEEeecccccccccccccc
Confidence            4468899999998765445788888882 22 1   11111  1122345 889999997554 45544566666 333 


Q ss_pred             cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEE
Q 017317          147 VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVAL  225 (373)
Q Consensus       147 ~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~  225 (373)
                      .+.... ..+ ....+..+++.+++.+.++.+.                 .+.+..++..+++....... ......+++
T Consensus       131 ~~~~~~-~~~-~~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         131 PRIKAE-LTS-SAPACYALAISPDSKVCFSCCS-----------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEE-EEC-SSSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cccccc-ccc-cccccccccccccccccccccc-----------------cccccccccccccccccccccccccccccc
Confidence            222211 111 1123567788999987766432                 36788888877765554433 233467899


Q ss_pred             ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          226 SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       226 ~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      +++++.++++. .++.+..|++...+  ....+  ...+....++++++|++.++.
T Consensus       192 s~~~~~~~~~~-~d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~~  242 (337)
T d1gxra_         192 SNDGTKLWTGG-LDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccc-ccccccccccccce--eeccc--ccccceEEEEEccccccccee
Confidence            99999666664 46678888865432  11122  122345567788888765543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.35  E-value=0.00019  Score=61.72  Aligned_cols=247  Identities=10%  Similarity=0.012  Sum_probs=126.6

Q ss_pred             ccCCcCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC
Q 017317           72 GEGILNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG  146 (373)
Q Consensus        72 ~~g~~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g  146 (373)
                      ..|--..-.+|++.++|.+. +++.+|.|..++ .+++... +........ .+++.++|.+.+ +.....+..++ ...
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeeccccccc
Confidence            34545556889999988765 677899999999 4554332 222233445 899999997655 44444444444 221


Q ss_pred             ---cEEEeeccCCccccccce---------eEEcCCCcEEEEeCCccc----------ccc-----ccccccccccCCce
Q 017317          147 ---VTVLASHVNGSRINLADD---------LIAATDGSIYFSVASTKF----------GLH-----NWGLDLLEAKPHGK  199 (373)
Q Consensus       147 ---~~~l~~~~~~~~~~~~~~---------l~~~~dG~l~v~~~~~~~----------~~~-----~~~~~~~~~~~~g~  199 (373)
                         ..... ...+.. .....         .....++...........          ...     .....+..+...+.
T Consensus       130 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  207 (340)
T d1tbga_         130 EGNVRVSR-ELAGHT-GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS  207 (340)
T ss_dssp             CSCCCEEE-EECCCS-SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccccccce-eccccc-ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence               11110 000000 00000         001111111111100000          000     00011222344577


Q ss_pred             EEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec-CCCCCCCceeECCCCCE
Q 017317          200 LLKYDPSLNETSILLDS-LFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE-NLPGGPDNIKLAPDGSF  277 (373)
Q Consensus       200 l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~dG~l  277 (373)
                      |..+|..+++....... ......++++|+++.++.+ ..++.+..+++....  ....+.. ........++++++|++
T Consensus       208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~-s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG-SDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             EEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCE
Confidence            88888877765544333 2334689999999955554 456678888765321  1122211 11122345788999987


Q ss_pred             EEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-E
Q 017317          278 WIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-H  354 (373)
Q Consensus       278 wva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~  354 (373)
                      .++....                                  +.+..+| .+++.+..+....    ..++.+.... + .
T Consensus       285 l~~g~~d----------------------------------g~i~iwd~~~~~~~~~~~~H~----~~V~~l~~s~d~~~  326 (340)
T d1tbga_         285 LLAGYDD----------------------------------FNCNVWDALKADRAGVLAGHD----NRVSCLGVTDDGMA  326 (340)
T ss_dssp             EEEEETT----------------------------------SCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSC
T ss_pred             EEEEECC----------------------------------CEEEEEECCCCcEEEEEcCCC----CCEEEEEEeCCCCE
Confidence            6654332                                  1356667 4688888776443    3477777763 3 5


Q ss_pred             EEEeeCCC
Q 017317          355 LYLGSLNT  362 (373)
Q Consensus       355 L~vgs~~~  362 (373)
                      |..|+..+
T Consensus       327 l~s~s~Dg  334 (340)
T d1tbga_         327 VATGSWDS  334 (340)
T ss_dssp             EEEEETTS
T ss_pred             EEEEccCC
Confidence            65566543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=2.3e-05  Score=71.82  Aligned_cols=182  Identities=11%  Similarity=0.020  Sum_probs=104.4

Q ss_pred             EEEEECCC-cEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEe
Q 017317          130 ILVCDADK-GLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYD  204 (373)
Q Consensus       130 L~va~~~~-gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d  204 (373)
                      ++|+.... .+..+| .++  +..+..   +   ..+.+++++|||+ +|++..                  .+.+..+|
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~---g---~~~~~v~fSpDG~~l~~~s~------------------dg~v~~~d   89 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDT---G---YAVHISRLSASGRYLFVIGR------------------DGKVNMID   89 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC---S---SCEEEEEECTTSCEEEEEET------------------TSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC---C---CCeeEEEECCCCCEEEEEcC------------------CCCEEEEE
Confidence            34665554 466677 555  333321   2   3578999999995 666643                  36888898


Q ss_pred             CCCCeEEEe--ecCCCCcceEEE----ccCCCEEEEEeCCCCeEEEEEecCCCCcceeEE-ec-------CCCCCCCcee
Q 017317          205 PSLNETSIL--LDSLFFANGVAL----SKDEDYLVVCETFKFRCLKYWLKGESKEQTEIF-VE-------NLPGGPDNIK  270 (373)
Q Consensus       205 ~~~~~~~~~--~~~~~~~~gi~~----~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~-------~~~g~p~~i~  270 (373)
                      ..+++.+..  ......+.++++    +|||+++|++....+.+..++............ ..       ...+.+..++
T Consensus        90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2          90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             eeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEE
Confidence            776653222  233345666654    579999999998888999998754332111000 00       0112233466


Q ss_pred             ECCCCCEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEE
Q 017317          271 LAPDGSFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSAL  349 (373)
Q Consensus       271 ~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~  349 (373)
                      .+++|..|+.+....                                 +.+..++ .+++......-+.|.   .+..+.
T Consensus       170 ~s~dg~~~~vs~~~~---------------------------------~~i~~~d~~~~~~~~~~~i~~g~---~~~~~~  213 (432)
T d1qksa2         170 ASHYRPEFIVNVKET---------------------------------GKILLVDYTDLNNLKTTEISAER---FLHDGG  213 (432)
T ss_dssp             ECSSSSEEEEEETTT---------------------------------TEEEEEETTCSSEEEEEEEECCS---SEEEEE
T ss_pred             ECCCCCEEEEEEccC---------------------------------CeEEEEEccCCCcceEEEEcccC---ccccce
Confidence            788887665544321                                 2344454 334433322222232   345555


Q ss_pred             Ee-C-CEEEEeeCCCCeEEEeeCC
Q 017317          350 EF-D-DHLYLGSLNTNFIGKLPLK  371 (373)
Q Consensus       350 ~~-~-g~L~vgs~~~~~i~~~~l~  371 (373)
                      .+ + .++++++..++.|..++..
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             ECCCCCEEEEeccccceEEEeecc
Confidence            54 3 4688888888888887765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=4e-05  Score=66.99  Aligned_cols=129  Identities=7%  Similarity=0.040  Sum_probs=85.1

Q ss_pred             Eec-CCCEEEEecCCeEEEEEc-CCceEEeeeecCccccCeEECCCCcE-EEEECCCc--EEEEe-cCC-cEEEeeccCC
Q 017317           84 VDR-NGVLYTATRDGWIKRLHK-NGTWENWKLIGGDTLLGITTTQENEI-LVCDADKG--LLKVT-EEG-VTVLASHVNG  156 (373)
Q Consensus        84 ~d~-~G~l~v~~~~g~I~~~~~-~g~~~~~~~~~~~p~~gl~~d~~g~L-~va~~~~g--l~~~~-~~g-~~~l~~~~~~  156 (373)
                      +.| ||++++....|.|+.++. .|+...+. ..++.. .+++.+||+. +++....+  ++.++ .++ .+.+...   
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~---   84 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN---   84 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECS-CCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC---
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEcc-CCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC---
Confidence            446 888887677889999984 44444443 345667 8999999964 44432332  55666 556 4443221   


Q ss_pred             ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEE
Q 017317          157 SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDEDYLVVC  235 (373)
Q Consensus       157 ~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg~~l~v~  235 (373)
                        ...+..++++|||+..++...                 .+.++.++.++++...... .......++++|||+.|.++
T Consensus        85 --~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          85 --LGNVFAMGVDRNGKFAVVAND-----------------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             --CCSEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             --CceEEeeeecccccccceecc-----------------ccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence              234678999999976555432                 3678889988777655443 33455789999999987765


Q ss_pred             e
Q 017317          236 E  236 (373)
Q Consensus       236 ~  236 (373)
                      .
T Consensus       146 ~  146 (360)
T d1k32a3         146 F  146 (360)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.22  E-value=4.6e-05  Score=66.62  Aligned_cols=131  Identities=9%  Similarity=0.047  Sum_probs=85.5

Q ss_pred             ECC-CCcEEEEECCCcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCce
Q 017317          124 TTQ-ENEILVCDADKGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGK  199 (373)
Q Consensus       124 ~d~-~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~  199 (373)
                      |.| ||++++....+.++.++ .+| ...+..      ...+.++++.|||+ |+++...                ....
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~------~~~v~~~~~spDg~~l~~~~~~----------------~g~~   67 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE------PLRIRYVRRGGDTKVAFIHGTR----------------EGDF   67 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECSC------CSCEEEEEECSSSEEEEEEEET----------------TEEE
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEccC------CCCEEEEEECCCCCEEEEEEcC----------------CCCE
Confidence            556 78877665556688888 555 443311      13577899999996 4444321                1135


Q ss_pred             EEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEE
Q 017317          200 LLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWI  279 (373)
Q Consensus       200 l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwv  279 (373)
                      |+.+|.++++.+.+.........++|+|||+.+..+. ..+.++.++..+....  .... ........+++.+||++.+
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPT--VIER-SREAMITDFTISDNSRFIA  143 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEE--EEEE-CSSSCCCCEEECTTSCEEE
T ss_pred             EEEEECCCCcEEEeeCCCceEEeeeecccccccceec-ccccccccccccccee--eeee-cccccccchhhccceeeee
Confidence            7888998888877766666677899999999666554 5667888887654322  1221 2234456788999998655


Q ss_pred             E
Q 017317          280 A  280 (373)
Q Consensus       280 a  280 (373)
                      .
T Consensus       144 ~  144 (360)
T d1k32a3         144 Y  144 (360)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=0.0013  Score=57.72  Aligned_cols=202  Identities=12%  Similarity=0.084  Sum_probs=108.6

Q ss_pred             ceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcE-EEEECCCcEEEEe-cCC-cEEEeec
Q 017317           80 EDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEI-LVCDADKGLLKVT-EEG-VTVLASH  153 (373)
Q Consensus        80 ~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L-~va~~~~gl~~~~-~~g-~~~l~~~  153 (373)
                      .++++.++|.+. +++.+|.|..++ ..++....... ..... .+.+.+++.. ..+.....+..++ .+. .......
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeecccccccccccc
Confidence            468888888766 677899998888 44443322222 23344 7788877764 4455544455666 444 2221111


Q ss_pred             cCCccccccceeEEc-CCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC--------CCCcceEE
Q 017317          154 VNGSRINLADDLIAA-TDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS--------LFFANGVA  224 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~-~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~--------~~~~~gi~  224 (373)
                       .    .....+.+. .+|++.++.+.                 .+.|..+|..++........        ......++
T Consensus       204 -~----~~~~~~~~~~~~~~~l~~~~~-----------------d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         204 -E----DGVTTVAVSPGDGKYIAAGSL-----------------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             -S----SCEEEEEECSTTCCEEEEEET-----------------TSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             -c----cccccccccCCCCCeEEEEcC-----------------CCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence             1    122334444 46666555332                 36677788766554322111        11235789


Q ss_pred             EccCCCEEEEEeCCCCeEEEEEecCCCCcc---------eeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCC
Q 017317          225 LSKDEDYLVVCETFKFRCLKYWLKGESKEQ---------TEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTS  295 (373)
Q Consensus       225 ~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~  295 (373)
                      ++++++.++.+ ..++.|..|++.......         .......-......++++++|++.++....           
T Consensus       262 ~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----------  329 (388)
T d1erja_         262 FTRDGQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----------  329 (388)
T ss_dssp             ECTTSSEEEEE-ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----------
T ss_pred             ECCCCCEEEEE-ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----------
Confidence            99999965554 456678888865322110         000010112234557788888765543321           


Q ss_pred             hHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCC
Q 017317          296 KATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNG  339 (373)
Q Consensus       296 p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g  339 (373)
                                             +.|..+| .+++.+..+....+
T Consensus       330 -----------------------g~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         330 -----------------------RGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             -----------------------SEEEEEETTTCCEEEEEECCSS
T ss_pred             -----------------------CEEEEEECCCCcEEEEEeCCCC
Confidence                                   2466677 56888888875543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.16  E-value=0.00073  Score=59.30  Aligned_cols=148  Identities=7%  Similarity=-0.164  Sum_probs=85.2

Q ss_pred             EEEecCC-CEEEEe-----cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEECC----------CcEEEEe
Q 017317           82 VCVDRNG-VLYTAT-----RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDAD----------KGLLKVT  143 (373)
Q Consensus        82 ia~d~~G-~l~v~~-----~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~~----------~gl~~~~  143 (373)
                      +++.|+| ++|+..     ..+.|+.+| .+|+..... ..+... ++++.+||+ ||++...          +.+..+|
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D  103 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence            3444544 456543     235688888 556544322 234556 799999995 6776432          1244555


Q ss_pred             -cCC-c-EEEeeccC--CccccccceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC
Q 017317          144 -EEG-V-TVLASHVN--GSRINLADDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL  217 (373)
Q Consensus       144 -~~g-~-~~l~~~~~--~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~  217 (373)
                       .++ . ..+.....  ......+..+++.++| .+|+....                ..+.+..++..+.+..   ...
T Consensus       104 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~---~~~  164 (373)
T d2madh_         104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVVQGGSSDD---QLL  164 (373)
T ss_pred             CCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc----------------CCCceEEeeccCCeEE---EEe
Confidence             444 2 22211100  0112245667888887 45665422                2234555555544432   223


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      ..+.++.++++++.+|++....+.+.+++....
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence            457889999999999999988889988886554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=0.00058  Score=59.25  Aligned_cols=186  Identities=9%  Similarity=-0.035  Sum_probs=92.7

Q ss_pred             CcceEEEecCCCEEE-EecCCeEE-EEE-cCCc---eEEeeeecCccccCeEECC--CCcEEE-EECCCcEEEEe-cCC-
Q 017317           78 GPEDVCVDRNGVLYT-ATRDGWIK-RLH-KNGT---WENWKLIGGDTLLGITTTQ--ENEILV-CDADKGLLKVT-EEG-  146 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v-~~~~g~I~-~~~-~~g~---~~~~~~~~~~p~~gl~~d~--~g~L~v-a~~~~gl~~~~-~~g-  146 (373)
                      .|.+++++++|...+ ++.+..++ .++ ...+   ...+......+...+++.|  +|++++ ++..+.|..++ ..+ 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467889999887764 44433333 333 1222   2222211223333788875  455554 34444455555 322 


Q ss_pred             -cEEEe----eccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCc
Q 017317          147 -VTVLA----SHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFA  220 (373)
Q Consensus       147 -~~~l~----~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~  220 (373)
                       ...+.    .... .....+.++++.++|...++.+.               .....+..++.++++......+ ....
T Consensus        99 ~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~v  162 (325)
T d1pgua1          99 ESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQRI  162 (325)
T ss_dssp             GGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSCE
T ss_pred             ceeeeecccccccc-cccCcEEEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeeccccc
Confidence             11111    0101 11224678999999976554332               0123345555555543332222 2334


Q ss_pred             ceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEec--CCCCCCCceeECCCC-CEEEEE
Q 017317          221 NGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVE--NLPGGPDNIKLAPDG-SFWIAI  281 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~dG-~lwva~  281 (373)
                      +.++|++++..++++...++.+..|+....+  .......  ........+++.+++ .+.++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~  224 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSGEFVITV  224 (325)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             ccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeeccccceecccc
Confidence            6789999998777766667778887754221  1111111  112234557788864 555443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.13  E-value=0.00013  Score=62.83  Aligned_cols=127  Identities=23%  Similarity=0.143  Sum_probs=79.4

Q ss_pred             EEEEECCCcEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeC
Q 017317          130 ILVCDADKGLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       130 L~va~~~~gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  205 (373)
                      ++++...+.|..+| +++  ...+....   ....+.+++++|||+ +|++...                 .+.|..+|.
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~---~~~~~~~i~~spDg~~l~v~~~~-----------------~~~v~v~D~   63 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----------------SESLVKIDL   63 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----------------TTEEEEEET
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCC---CCCCccEEEECCCCCEEEEEECC-----------------CCeEEEEEC
Confidence            44455556777788 555  33332211   123578999999996 6777543                 478999999


Q ss_pred             CCCeEEEeecC------CCCcceEEEccCCCEEEEEeCC-----------CCeEEEEEecCCCCcceeEEecCCCCCCCc
Q 017317          206 SLNETSILLDS------LFFANGVALSKDEDYLVVCETF-----------KFRCLKYWLKGESKEQTEIFVENLPGGPDN  268 (373)
Q Consensus       206 ~~~~~~~~~~~------~~~~~gi~~~~dg~~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~  268 (373)
                      .+++.......      ...+.++++++|++.+|++...           ...+..++....   ...... .....+.+
T Consensus        64 ~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~  139 (337)
T d1pbyb_          64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAF-EAPRQITM  139 (337)
T ss_dssp             TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEE-ECCSSCCC
T ss_pred             CCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEec-cccCCceE
Confidence            88876543221      2356789999999999988642           334555554322   111111 12346889


Q ss_pred             eeECCCCC-EEEE
Q 017317          269 IKLAPDGS-FWIA  280 (373)
Q Consensus       269 i~~d~dG~-lwva  280 (373)
                      +++++||. +|++
T Consensus       140 ~~~s~dg~~l~~~  152 (337)
T d1pbyb_         140 LAWARDGSKLYGL  152 (337)
T ss_dssp             EEECTTSSCEEEE
T ss_pred             EEEcCCCCEEEEE
Confidence            99999996 4554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.10  E-value=5.1e-05  Score=69.81  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=98.7

Q ss_pred             ceEEeeeecCccccCeEECCCCcEEEEECC-CcEEEEe-cCC-cEEEeeccC----CccccccceeEEcCC----CcEEE
Q 017317          107 TWENWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVLASHVN----GSRINLADDLIAATD----GSIYF  175 (373)
Q Consensus       107 ~~~~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g-~~~l~~~~~----~~~~~~~~~l~~~~d----G~l~v  175 (373)
                      +.++++.....|. +|++.++|+|||++.. +.|++++ .++ .+.+.....    ........+|+++|+    +.||+
T Consensus        18 ~~~~ia~~L~~P~-~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            4566776678999 9999999999999964 4577787 566 554443211    112235568999885    78999


Q ss_pred             EeCCccccccccccccccccCCceEEEE--eCCCCeE---EEee-----cCCCCcceEEEccCCCEEEEEeCC-------
Q 017317          176 SVASTKFGLHNWGLDLLEAKPHGKLLKY--DPSLNET---SILL-----DSLFFANGVALSKDEDYLVVCETF-------  238 (373)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~~~~~---~~~~-----~~~~~~~gi~~~~dg~~l~v~~~~-------  238 (373)
                      +-+.....  ....   .......+.++  +......   +.+.     ...+....|+|++||. ||++-..       
T Consensus        97 syt~~~~~--~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~  170 (450)
T d1crua_          97 SGTFKNPK--STDK---ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (450)
T ss_dssp             EEEEECTT--C--C---CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEecCCCC--Cccc---ccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccccc
Confidence            73210000  0000   00001123333  3322221   1121     1224456799999997 9987542       


Q ss_pred             -------------------------CCeEEEEEecCCCCc--------ceeEEecCCCCCCCceeECCCCCEEEEEecCC
Q 017317          239 -------------------------KFRCLKYWLKGESKE--------QTEIFVENLPGGPDNIKLAPDGSFWIAILQLS  285 (373)
Q Consensus       239 -------------------------~~~i~~~~~~~~~~~--------~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~  285 (373)
                                               ..+|.|++.++....        ..+++... ...|-++++|++|+||++..+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G-~RNp~g~~~~p~g~l~~~e~G~~  249 (450)
T d1crua_         171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG-HRNPQGLAFTPNGKLLQSEQGPN  249 (450)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC-CSEEEEEEECTTSCEEEEEECSS
T ss_pred             ccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEec-cccccceeecccceeeecccccc
Confidence                                     257888876653211        12344422 22477899999999999988643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.04  E-value=0.00037  Score=63.24  Aligned_cols=200  Identities=14%  Similarity=0.100  Sum_probs=112.2

Q ss_pred             CCcceEEEe--cCC-CEEEEe-cCCeEEEEE-cCCceEEeee--ecCccccCeEECCCCc-EEEEECC-CcE--------
Q 017317           77 NGPEDVCVD--RNG-VLYTAT-RDGWIKRLH-KNGTWENWKL--IGGDTLLGITTTQENE-ILVCDAD-KGL--------  139 (373)
Q Consensus        77 ~~P~~ia~d--~~G-~l~v~~-~~g~I~~~~-~~g~~~~~~~--~~~~p~~gl~~d~~g~-L~va~~~-~gl--------  139 (373)
                      ..|.....+  +|| .||+.+ .+++|-+++ .+++......  ....|+ |+++.++|+ +||+... ..+        
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCcccc
Confidence            345444432  456 488776 788999999 5555544433  256789 999999885 6776422 222        


Q ss_pred             ----------EEEe-cCCcEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccc---------cc----------
Q 017317          140 ----------LKVT-EEGVTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHN---------WG----------  188 (373)
Q Consensus       140 ----------~~~~-~~g~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~---------~~----------  188 (373)
                                ..+| .+. +.......   ...+..+++++||. +|++....+-....         +.          
T Consensus       149 ~~~~~~~~~~~~iD~~t~-~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETM-DVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             CCGGGEEEEEEEEETTTC-SEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             cccccccceEEeecCccc-eeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                      1233 121 11100000   12467899999995 78876543211110         00          


Q ss_pred             ----cccccccCCceEEEEeC-CCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecC------CCCcce-e
Q 017317          189 ----LDLLEAKPHGKLLKYDP-SLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKG------ESKEQT-E  256 (373)
Q Consensus       189 ----~~~~~~~~~g~l~~~d~-~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~------~~~~~~-~  256 (373)
                          .....-.. .++..++. .+.+..........|.|+.++|||+++|++....+.+..++++.      .+.... .
T Consensus       225 ~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~  303 (441)
T d1qnia2         225 AVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT  303 (441)
T ss_dssp             HHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred             EecCCCEEEeCC-CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceE
Confidence                00001111 23444443 32333333445567999999999999999999999999999641      112211 1


Q ss_pred             EEecCCCC-CCCceeECCCCCEEEEEe
Q 017317          257 IFVENLPG-GPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       257 ~~~~~~~g-~p~~i~~d~dG~lwva~~  282 (373)
                      ...+...+ .|....+|.+|+.|.+..
T Consensus       304 ~~~~~~~glgplh~~fd~~g~~yts~~  330 (441)
T d1qnia2         304 IVAEPELGLGPLHTTFDGRGNAYTTLF  330 (441)
T ss_dssp             EEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred             EEeecccccCcccceecCCceEEEccc
Confidence            22221112 355568999999998865

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.04  E-value=0.0025  Score=55.83  Aligned_cols=182  Identities=11%  Similarity=-0.002  Sum_probs=99.3

Q ss_pred             CcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeee-------------------ecCccccCeEECCCCcEEE-EECC
Q 017317           78 GPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKL-------------------IGGDTLLGITTTQENEILV-CDAD  136 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~-------------------~~~~p~~gl~~d~~g~L~v-a~~~  136 (373)
                      .-.+++++++|++.+...++.|..++ .+++......                   ...... .+++.++|++.+ +...
T Consensus        64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecccc
Confidence            35789999999887544578898888 4554321110                   011234 788999997655 4544


Q ss_pred             CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee
Q 017317          137 KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL  214 (373)
Q Consensus       137 ~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~  214 (373)
                      +.+..++ ..+ ......   + ....+..+.+.+++...++.+.                 .+.+..+|..+.......
T Consensus       143 g~v~i~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQ---G-HEQDIYSLDYFPSGDKLVSGSG-----------------DRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             SCEEEEETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEET-----------------TSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccccccccc---c-cccccccccccccccccccccc-----------------ceeeeeeecccccccccc
Confidence            4455556 444 222111   1 1234667888888865554322                 367888888766655444


Q ss_pred             cCCCCcceEEEcc-CCCEEEEEeCCCCeEEEEEecCCCCcc-eeEEecCC---CCCCCceeECCCCCEEEEEe
Q 017317          215 DSLFFANGVALSK-DEDYLVVCETFKFRCLKYWLKGESKEQ-TEIFVENL---PGGPDNIKLAPDGSFWIAIL  282 (373)
Q Consensus       215 ~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~---~g~p~~i~~d~dG~lwva~~  282 (373)
                      ........+.+.+ +++ ++++...++.|..++........ ........   .+....++++++|++.++..
T Consensus       202 ~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             ECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccCCCCC-eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            3333444455554 666 44444456678888865332111 10000011   12234577888888665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=0.0018  Score=56.03  Aligned_cols=145  Identities=10%  Similarity=-0.104  Sum_probs=84.5

Q ss_pred             cCC-CEEEEe-----cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCc-EEEEEC----------CCcEEEEe-cCC
Q 017317           86 RNG-VLYTAT-----RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-ILVCDA----------DKGLLKVT-EEG  146 (373)
Q Consensus        86 ~~G-~l~v~~-----~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L~va~~----------~~gl~~~~-~~g  146 (373)
                      |+| ++|+..     ..+.|+.+| ..|+..... ..+... ++++++||+ ||+++.          .+.|..+| .++
T Consensus        11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~   88 (355)
T d2bbkh_          11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL   88 (355)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence            344 466654     234688888 455543322 234555 789999996 888653          12366777 556


Q ss_pred             --cEEEeeccC--CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-----
Q 017317          147 --VTVLASHVN--GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-----  216 (373)
Q Consensus       147 --~~~l~~~~~--~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-----  216 (373)
                        ...+.....  ..-...+..+++.++|+ ++++...                ....+..++..+++.......     
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d2bbkh_          89 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYH  152 (355)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred             CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeEEecCCcce
Confidence              233222111  11123567899999984 7776543                224566667666654332211     


Q ss_pred             ---CCCcceEEEccCCCEEEEEeCCCCeEEEEEec
Q 017317          217 ---LFFANGVALSKDEDYLVVCETFKFRCLKYWLK  248 (373)
Q Consensus       217 ---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  248 (373)
                         ......+++++|++.+++.......+..++..
T Consensus       153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence               11234578999999898887777767766643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=0.00066  Score=59.96  Aligned_cols=183  Identities=10%  Similarity=-0.055  Sum_probs=99.4

Q ss_pred             CcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEee---eecCccccCeEECCCCcEE-EEECCCcEEEEe-cCC--cE
Q 017317           78 GPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWK---LIGGDTLLGITTTQENEIL-VCDADKGLLKVT-EEG--VT  148 (373)
Q Consensus        78 ~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~---~~~~~p~~gl~~d~~g~L~-va~~~~gl~~~~-~~g--~~  148 (373)
                      .-.+|++.|+|++. +++.++.|..++ .++..+...   ....... .+.++++++.+ ++...+.+..++ ...  ..
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeecccccc
Confidence            35788999988765 567889999988 344433222   1123355 88999999754 455444344433 322  22


Q ss_pred             EEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeE------------------
Q 017317          149 VLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET------------------  210 (373)
Q Consensus       149 ~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~------------------  210 (373)
                      ........ ....+..++++|+|.+.++.+.                 .+.+..++...+..                  
T Consensus       132 ~~~~~~~~-~~~~v~~v~~~p~~~~l~s~s~-----------------D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         132 VCKHIKKP-IRSTVLSLDWHPNSVLLAAGSC-----------------DFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             EEEEECTT-CCSCEEEEEECTTSSEEEEEET-----------------TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             cccccccc-cccccccccccccccceecccc-----------------CcEEEEEeeccCccccccccccccccccceee
Confidence            22221111 1234678899999987765432                 24454454432211                  


Q ss_pred             -EEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEec
Q 017317          211 -SILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       211 -~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                       ...........+++|+|+++.++.+. .++.|..+++....  ....+.. ...-...+++.++|.+.++...
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~--~~~~~~~-~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AVATLAS-ETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EEEEEEC-SSCCEEEEEEEETTEEEEEETT
T ss_pred             eeeccCccCcEEEEEeecccccccccc-cCCcceEEeeeccc--ceeeeec-ccccceeeeecCCCCEEEEEcC
Confidence             00111122346789999999666554 56788888875432  1112211 1111245677777776665443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.98  E-value=1.1e-05  Score=73.56  Aligned_cols=198  Identities=8%  Similarity=-0.028  Sum_probs=108.3

Q ss_pred             CCCc-EEEEECC-CcEEEEe-cCC-cEEEeeccCCccccccceeEEcCCC-cEEEEeCCcccccc--ccccccccccCCc
Q 017317          126 QENE-ILVCDAD-KGLLKVT-EEG-VTVLASHVNGSRINLADDLIAATDG-SIYFSVASTKFGLH--NWGLDLLEAKPHG  198 (373)
Q Consensus       126 ~~g~-L~va~~~-~gl~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG-~l~v~~~~~~~~~~--~~~~~~~~~~~~g  198 (373)
                      +||+ |||++.. ..|-++| .++ .........   ...+.++++.++| ++||+.... +...  .....+.+.+...
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccc
Confidence            6784 8998755 4678888 666 333222111   2468899999999 578875432 2111  1111111222224


Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEE
Q 017317          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFW  278 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lw  278 (373)
                      .+..+|+.+.+..........|.++++++||+++|+++.+.+.+..++....+....-.+.    ..|..+++.++|+..
T Consensus       157 ~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~----n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF----NVERIAAAVKAGNFK  232 (441)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE----EHHHHHHHHHTTCCB
T ss_pred             eEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC----CccceEEEecCCCEE
Confidence            4567888877654333333578999999999999999877665554443222211111111    134455556666532


Q ss_pred             EEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe--CCEE
Q 017317          279 IAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF--DDHL  355 (373)
Q Consensus       279 va~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L  355 (373)
                      .. .+.                                  +.+.... ...+.+..+.  .|+   .+..+..+  +.++
T Consensus       233 ~v-~~~----------------------------------~v~vvd~~~~~~v~~~IP--vgk---sPhGv~vSPDGkyl  272 (441)
T d1qnia2         233 TI-GDS----------------------------------KVPVVDGRGESEFTRYIP--VPK---NPHGLNTSPDGKYF  272 (441)
T ss_dssp             CC-TTC----------------------------------CCCEEECSSSCSSEEEEC--CBS---SCCCEEECTTSCEE
T ss_pred             Ee-CCC----------------------------------CcEEEEcccCCceEEEEe--CCC---CccCceECCCCCEE
Confidence            11 111                                  1112222 3334444443  333   23444443  4579


Q ss_pred             EEeeCCCCeEEEeeCC
Q 017317          356 YLGSLNTNFIGKLPLK  371 (373)
Q Consensus       356 ~vgs~~~~~i~~~~l~  371 (373)
                      |+++-.++.|.++++.
T Consensus       273 ~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         273 IANGKLSPTVSVIAID  288 (441)
T ss_dssp             EEECTTSSBEEEEEGG
T ss_pred             EEeCCcCCcEEEEEee
Confidence            9999999999998864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=0.0045  Score=53.28  Aligned_cols=231  Identities=12%  Similarity=0.048  Sum_probs=122.8

Q ss_pred             cceEEEec--CCCEE-EEecCCeEEEEEc-CCc----eEE-----eeeecCccccCeEECCCCcEEEE-EC--CCcEEEE
Q 017317           79 PEDVCVDR--NGVLY-TATRDGWIKRLHK-NGT----WEN-----WKLIGGDTLLGITTTQENEILVC-DA--DKGLLKV  142 (373)
Q Consensus        79 P~~ia~d~--~G~l~-v~~~~g~I~~~~~-~g~----~~~-----~~~~~~~p~~gl~~d~~g~L~va-~~--~~gl~~~  142 (373)
                      -.++++.|  +|.+. .|+.+|.|..++. .++    ...     +....+... .+++.++|+.+++ ..  ...+..+
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEEE
Confidence            45677865  55555 5778999988872 211    111     111123344 8889999975543 22  2234445


Q ss_pred             e-cCC--cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-
Q 017317          143 T-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-  217 (373)
Q Consensus       143 ~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-  217 (373)
                      + .++  ...+.    + ....++.+++.+++. +.++.+                 ..+.+..+|....+........ 
T Consensus       145 ~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~~~~~~-----------------~d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         145 SWDSGNSLGEVS----G-HSQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             ETTTCCEEEECC----S-CSSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTTBEEEEEECSSS
T ss_pred             eecccccceeee----e-cccccccccccccccceEEEee-----------------cccccccccccccccceeccccc
Confidence            5 445  23321    1 123467889998875 444432                 2467778887655544322221 


Q ss_pred             ---CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeEC---CCCCEEEEEecCCCchhhh
Q 017317          218 ---FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLA---PDGSFWIAILQLSSPGLEF  291 (373)
Q Consensus       218 ---~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d---~dG~lwva~~~~~~~~~~~  291 (373)
                         .....++|+||+..++++...++.|..|+....+  ....+. .-.....++.+.   ++|+++++....       
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D-------  272 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGAD-------  272 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEETT-------
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeCC-------
Confidence               2245789999865577766667789999865332  111221 111112233332   677766554332       


Q ss_pred             ccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEe-CCEEEEeeCCCCeEEEee
Q 017317          292 VHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEF-DDHLYLGSLNTNFIGKLP  369 (373)
Q Consensus       292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~L~vgs~~~~~i~~~~  369 (373)
                                                 +.+..+| .+++.+..+.............+... ++.|.-++.. ..|...+
T Consensus       273 ---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-g~i~vwd  324 (325)
T d1pgua1         273 ---------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-GTLNFYE  324 (325)
T ss_dssp             ---------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT-SCEEEEE
T ss_pred             ---------------------------CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC-CEEEEEE
Confidence                                       2355566 45777777764332212222333433 4577666654 4577665


Q ss_pred             C
Q 017317          370 L  370 (373)
Q Consensus       370 l  370 (373)
                      |
T Consensus       325 l  325 (325)
T d1pgua1         325 L  325 (325)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.92  E-value=0.00041  Score=59.52  Aligned_cols=142  Identities=8%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             EEEecCCCEE-EEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-cCC--cEEEeecc
Q 017317           82 VCVDRNGVLY-TATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-EEG--VTVLASHV  154 (373)
Q Consensus        82 ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~~g--~~~l~~~~  154 (373)
                      ....+.+.++ .+..++.|..++ .+++... +....+... +++++++|+++++ ...+.+..++ ...  ...+..  
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~--  266 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--  266 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeeccccccccccc--
Confidence            3344455555 566888898888 4554332 222233455 8899999976554 4444466666 444  222211  


Q ss_pred             CCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC-CCCcceEEEccCCCEEE
Q 017317          155 NGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS-LFFANGVALSKDEDYLV  233 (373)
Q Consensus       155 ~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~-~~~~~gi~~~~dg~~l~  233 (373)
                       ......+..++++++|++.++.+.                 .|.|..+|..+++......+ ......++|++|++.|+
T Consensus       267 -~~~~~~i~~~~~s~~~~~l~~g~~-----------------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         267 -DNIICGITSVSFSKSGRLLLAGYD-----------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             -TTCCSCEEEEEECSSSCEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             -ccccCceEEEEECCCCCEEEEEEC-----------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence             112234678899999987666432                 47788899877765544443 23347899999998555


Q ss_pred             EEeCCCCeEEEE
Q 017317          234 VCETFKFRCLKY  245 (373)
Q Consensus       234 v~~~~~~~i~~~  245 (373)
                      .+ ..++.|..+
T Consensus       329 s~-s~Dg~v~iW  339 (340)
T d1tbga_         329 TG-SWDSFLKIW  339 (340)
T ss_dssp             EE-ETTSCEEEE
T ss_pred             EE-ccCCEEEEe
Confidence            44 344555544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=0.0043  Score=51.80  Aligned_cols=150  Identities=11%  Similarity=0.061  Sum_probs=90.1

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEE-cCCceE-EeeeecCccccCeEECCCCcEEEEECC-CcEEEEe-cCC-cEEE
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWE-NWKLIGGDTLLGITTTQENEILVCDAD-KGLLKVT-EEG-VTVL  150 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~-~~~~~~~~p~~gl~~d~~g~L~va~~~-~gl~~~~-~~g-~~~l  150 (373)
                      ..-.+|++.++|.+. +++.+|.|..++ .+++.. .+........ .+++++++.+.+.... ..+...+ ... ....
T Consensus        18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT   96 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeecccccccccccccccccccccccccccc
Confidence            445788999988766 667899999998 555433 2322233455 8899998876655333 3344444 222 2111


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec-CCCCcceEEEccCC
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD-SLFFANGVALSKDE  229 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~-~~~~~~gi~~~~dg  229 (373)
                      ..   + .......+.+.+++...++...                 .+.+..+|..+++...... .......+++++++
T Consensus        97 ~~---~-~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1          97 MH---G-HDHNVSSVSIMPNGDHIVSASR-----------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG  155 (317)
T ss_dssp             CC---C-CSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             cc---c-ccccceeeeccCCCceEEeecc-----------------CcceeEeecccceeeeEEccCCCcceeeecccCC
Confidence            11   1 1123556788888876665432                 3677777877665443332 33445678899999


Q ss_pred             CEEEEEeCCCCeEEEEEecC
Q 017317          230 DYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       230 ~~l~v~~~~~~~i~~~~~~~  249 (373)
                      +.+..+ ..++.+..++...
T Consensus       156 ~~l~~~-~~d~~v~~~~~~~  174 (317)
T d1vyhc1         156 TLIASC-SNDQTVRVWVVAT  174 (317)
T ss_dssp             SEEEEE-ETTSCEEEEETTT
T ss_pred             CEEEEE-eCCCeEEEEeecc
Confidence            855444 4566777777543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.87  E-value=0.00032  Score=61.79  Aligned_cols=185  Identities=18%  Similarity=0.169  Sum_probs=108.5

Q ss_pred             cccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCe--EEEe--ecC-----CCCcceEEEc--cC
Q 017317          160 NLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNE--TSIL--LDS-----LFFANGVALS--KD  228 (373)
Q Consensus       160 ~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~--~~~~--~~~-----~~~~~gi~~~--~d  228 (373)
                      ..+.||++++||.+|++.....-+...+     .....|.++.+|.++..  ...+  ..+     ...|.|+.+.  .|
T Consensus        35 ~G~EDi~~~~dg~~~issg~~~~~~~~~-----~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~d  109 (340)
T d1v04a_          35 NGSEDLEILPNGLAFISSGLKYPGIMSF-----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  109 (340)
T ss_dssp             SCCCEEEECTTSEEEEEECCCC-------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTT
T ss_pred             CCcceEEECCCCcEEEEecCccCCCCCC-----CCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCC
Confidence            3688999999999998864211111111     12335899999976443  2222  111     1468998874  45


Q ss_pred             CC-EEEEEeC--CCCeEEEEEecCC--CCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchhhhccCChHHHHHHH
Q 017317          229 ED-YLVVCET--FKFRCLKYWLKGE--SKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGLEFVHTSKATKHLLA  303 (373)
Q Consensus       229 g~-~l~v~~~--~~~~i~~~~~~~~--~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~~~~~~~p~~~~~~~  303 (373)
                      |+ .|+|++-  .+.+|..|.+...  .......+.......|+.++...+|.+|++.....        ..+..+.+..
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~--------~~~~~~~~e~  181 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYF--------IDPYLKSWEM  181 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSC--------CSHHHHHHHH
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccC--------cChhhhhhhH
Confidence            55 5777764  4566777766432  22233333334446799999999999999964321        1222222211


Q ss_pred             hcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCCceecceeEEEEe--CCEEEEeeCCCCeEEEeeCCC
Q 017317          304 AFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNGKVMSFVTSALEF--DDHLYLGSLNTNFIGKLPLKA  372 (373)
Q Consensus       304 ~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~--~g~L~vgs~~~~~i~~~~l~~  372 (373)
                               ....+++.++.++++... ....   +  .....++..+  ++.||++...+..|.+|++.+
T Consensus       182 ---------~~~~~~g~v~~~~~~~~~-~~~~---~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         182 ---------HLGLAWSFVTYYSPNDVR-VVAE---G--FDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             ---------HTTCCCEEEEEECSSCEE-EEEE---E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ---------hhcCCceeEEEEcCCceE-EEcC---C--CCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence                     013456778888764322 2221   1  3456666665  358999999999999998863

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.86  E-value=0.0026  Score=55.54  Aligned_cols=186  Identities=10%  Similarity=0.030  Sum_probs=97.9

Q ss_pred             CCcceEEEecCCC-EE-EEecCCeEEEEEc-CCceEEeeee-----cC--ccccCeEECCCCcEEEEECCCcEEEEe-cC
Q 017317           77 NGPEDVCVDRNGV-LY-TATRDGWIKRLHK-NGTWENWKLI-----GG--DTLLGITTTQENEILVCDADKGLLKVT-EE  145 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~-v~~~~g~I~~~~~-~g~~~~~~~~-----~~--~p~~gl~~d~~g~L~va~~~~gl~~~~-~~  145 (373)
                      ..|.++++.++|. +| ....+|.+..++. +++.......     ..  ... .+..+.++.+........++.++ ..
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcCC
Confidence            4577778877664 55 3457788888873 3332221110     11  122 34445544433333334455555 33


Q ss_pred             C-cEEEeec-c-C------CccccccceeEEcCCCc-EEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317          146 G-VTVLASH-V-N------GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (373)
Q Consensus       146 g-~~~l~~~-~-~------~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  215 (373)
                      + ....... . .      .........+++.++|. +|+.....        .........+.+..+|..+++......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~v~~~d~~t~~~~~~~~  315 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ--------SAWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC--------ceEEeecCCCeEEEEECCCCcEEEEec
Confidence            3 2221110 0 0      00011233456777763 55442210        011122234678889988877655555


Q ss_pred             CCCCcceEEEccCCCE-EEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCC
Q 017317          216 SLFFANGVALSKDEDY-LVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPD  274 (373)
Q Consensus       216 ~~~~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~d  274 (373)
                      ....+.+++|++||+. +|++....+.|+.||....+.  ... .......|..+++..+
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~--~~~-~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ--DQS-TVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EEE-ECCCCCCCcEEEEecC
Confidence            5567889999999987 466777888899999764321  122 2123346888887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.73  E-value=0.0028  Score=56.97  Aligned_cols=110  Identities=12%  Similarity=0.019  Sum_probs=68.3

Q ss_pred             CccccCeEECCC--CcEEEEECCC-cEEEEe-cCC--cEEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccccc
Q 017317          116 GDTLLGITTTQE--NEILVCDADK-GLLKVT-EEG--VTVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHNWG  188 (373)
Q Consensus       116 ~~p~~gl~~d~~--g~L~va~~~~-gl~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~  188 (373)
                      .+|. ...++.+  +.++|+.... .|..+| .++  +..+..   +   ..+.+++++|||+ +|++..          
T Consensus        19 ~~p~-~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~---g---~~~~~vafSPDGk~l~~~~~----------   81 (426)
T d1hzua2          19 DRPK-KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT---G---YAVHISRMSASGRYLLVIGR----------   81 (426)
T ss_dssp             GSCS-SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC---C---SSEEEEEECTTSCEEEEEET----------
T ss_pred             cCCC-cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC---C---CCeeEEEECCCCCEEEEEeC----------
Confidence            3444 4444443  3355766544 466677 566  333321   1   3578999999996 566543          


Q ss_pred             cccccccCCceEEEEeCCCCeEEEee--cCCCCcceEE----EccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          189 LDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVA----LSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       189 ~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~----~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                              .+.|..+|.++++.....  .....+.+++    ++|||++++++....+.+..++....
T Consensus        82 --------d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~  141 (426)
T d1hzua2          82 --------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  141 (426)
T ss_dssp             --------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             --------CCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence                    368888998877644322  2233455554    56799999999877788888875543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.70  E-value=0.0023  Score=56.23  Aligned_cols=181  Identities=11%  Similarity=-0.028  Sum_probs=89.6

Q ss_pred             CCcceEEEecCCC-EEEEe-cCCeEEEEE-cCCceEEeeeecCccccCeEECCCCcEEEE-ECCCcEEEEe-c-CC-cEE
Q 017317           77 NGPEDVCVDRNGV-LYTAT-RDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQENEILVC-DADKGLLKVT-E-EG-VTV  149 (373)
Q Consensus        77 ~~P~~ia~d~~G~-l~v~~-~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~L~va-~~~~gl~~~~-~-~g-~~~  149 (373)
                      ..|..+++.+||+ ||+++ ..+.|..++ .+++..........+  .+..+. ...+++ .....+..++ . .+ ...
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~  200 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--HIHPGA-AATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--CCEEEE-TTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--eEccCC-CceEEEEcCCCCEEEEEecCCceeee
Confidence            4588899999885 67776 568899998 455544332222221  111111 123332 1222333333 2 12 111


Q ss_pred             Eeec-cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecC------------
Q 017317          150 LASH-VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDS------------  216 (373)
Q Consensus       150 l~~~-~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~------------  216 (373)
                      .... ........+.....+++|.++++..                   +.++.++...+........            
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (368)
T d1mdah_         201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVA-------------------SSILQGDIPAAGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECBS-------------------SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred             eeecccccccccceeecccccCcEEEEecC-------------------CCEEEEeecCCceEEEeecccccceeeeeee
Confidence            1111 0011112334456666666555432                   3455555443333322110            


Q ss_pred             -CCCcceEEEccCCCEEEEEeCCC--------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC--EEEEEec
Q 017317          217 -LFFANGVALSKDEDYLVVCETFK--------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS--FWIAILQ  283 (373)
Q Consensus       217 -~~~~~gi~~~~dg~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~--lwva~~~  283 (373)
                       ...+..++++++++.+|++....        ..|+.+|....+...  .+  .....+..+++++||+  +|++...
T Consensus       262 ~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~--~~--~~~~~~~~~a~spDG~~~ly~s~~~  335 (368)
T d1mdah_         262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG--PI--SNGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE--CC--EEEEEECEEEECCSSSCEEEEEETT
T ss_pred             cCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE--Ee--cCCCceeEEEECCCCCEEEEEEeCC
Confidence             11245689999999899875332        357777765432111  11  1123578899999995  4666543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=0.015  Score=49.15  Aligned_cols=64  Identities=11%  Similarity=0.125  Sum_probs=40.9

Q ss_pred             eEEEecCCCEEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC
Q 017317           81 DVCVDRNGVLYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (373)
Q Consensus        81 ~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g  146 (373)
                      ++..| +..|.+|+.+|.|..++ .+++... +....+... ++++.+++.|+.+...+.+..++ ...
T Consensus        18 c~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2          18 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred             EEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEeccccccccccccc
Confidence            45555 34566888999999999 5565432 222234455 88998777777776655566666 444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.34  E-value=0.031  Score=47.77  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=50.0

Q ss_pred             ceEEEccCCCEEEEEeCCC---------CeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC-EEEEEecCCCchhh
Q 017317          221 NGVALSKDEDYLVVCETFK---------FRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS-FWIAILQLSSPGLE  290 (373)
Q Consensus       221 ~gi~~~~dg~~l~v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~-lwva~~~~~~~~~~  290 (373)
                      ..+++++|++.+|++....         +.|..++....+.  ...+.  ....|.++++++||+ +++++...      
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~--~~~~~--~~~~~~~~a~spDG~~~l~v~~~~------  321 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFE--MGHEIDSINVSQDEKPLLYALSTG------  321 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEE--EEEEECEEEECCSSSCEEEEEETT------
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE--EEEec--CCCCEEEEEEcCCCCeEEEEEECC------
Confidence            4589999999999875432         3577777654321  11111  123578899999996 44444332      


Q ss_pred             hccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeC
Q 017317          291 FVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFED  336 (373)
Q Consensus       291 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~  336 (373)
                                                 .+.|..+| .+|+.+..+..
T Consensus       322 ---------------------------d~~i~v~D~~tg~~~~~i~~  341 (355)
T d2bbkh_         322 ---------------------------DKTLYIHDAESGEELRSVNQ  341 (355)
T ss_dssp             ---------------------------TTEEEEEETTTCCEEEEECC
T ss_pred             ---------------------------CCEEEEEECCCCCEEEEEeC
Confidence                                       12467788 57898888753

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.23  E-value=0.0039  Score=54.67  Aligned_cols=106  Identities=6%  Similarity=-0.157  Sum_probs=65.1

Q ss_pred             ceeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCC---
Q 017317          163 DDLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETF---  238 (373)
Q Consensus       163 ~~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---  238 (373)
                      ..++..++| +.|++....             ......||.+|.++++.......... .++++++||+++|+++..   
T Consensus        23 ~~~a~~~~~~~~~v~~~~~-------------~~g~~~~~~~d~~~~~~~~~~~~~~~-~~~a~spDg~~i~~~~~~~~~   88 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAY-------------FAGTTENWVSCAGCGVTLGHSLGAFL-SLAVAGHSGSDFALASTSFAR   88 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTT-------------TCSSEEEEEEETTTTEEEEEEEECTT-CEEEECTTSSCEEEEEEEETT
T ss_pred             cccccCCCCcceeEEeecc-------------CCCcceEEEEeCCCCcEEEEEeCCCC-CcceECCCCCEEEEEcccCcc
Confidence            345566777 456654321             12346799999998886554443333 479999999999998742   


Q ss_pred             ------CCeEEEEEecCCCCcceeEEec-----CCCCCCCceeECCCCC-EEEEEec
Q 017317          239 ------KFRCLKYWLKGESKEQTEIFVE-----NLPGGPDNIKLAPDGS-FWIAILQ  283 (373)
Q Consensus       239 ------~~~i~~~~~~~~~~~~~~~~~~-----~~~g~p~~i~~d~dG~-lwva~~~  283 (373)
                            .+.|..||..+.+... ..-..     .....|.++++++||+ +|++...
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~-~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~  144 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEE-EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             ccccccCCeEEEEECCCCcEee-eecCCccceecccCCccceEECCCCCEEEEEeCC
Confidence                  2347778765432111 11111     0123588899999995 7777654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.0033  Score=55.67  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=83.9

Q ss_pred             cceEEEecCCCEEEEecCCeEEEEE-cCCceE-Eeee------ecCccccCeEECCCCcEEEEEC-CC--c-EEEEe-cC
Q 017317           79 PEDVCVDRNGVLYTATRDGWIKRLH-KNGTWE-NWKL------IGGDTLLGITTTQENEILVCDA-DK--G-LLKVT-EE  145 (373)
Q Consensus        79 P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~-~~~~------~~~~p~~gl~~d~~g~L~va~~-~~--g-l~~~~-~~  145 (373)
                      ..++++.++|.|.+|+.+|.|..++ ..++.. .+..      ...... .+++.++|++.++.. .+  + +..++ ++
T Consensus       187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeeccccc
Confidence            5678888999887888999999998 444422 1211      122345 889999998766532 22  3 34456 56


Q ss_pred             C--cEEEeeccCC--------ccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeec
Q 017317          146 G--VTVLASHVNG--------SRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLD  215 (373)
Q Consensus       146 g--~~~l~~~~~~--------~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~  215 (373)
                      |  ...+......        .....++++++.|||++.++.+.                 .+.|..+|.++++......
T Consensus       266 g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-----------------D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-----------------DGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-----------------TSEEEEEETTTTEEEEEEE
T ss_pred             ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC-----------------CCEEEEEECCCCCEEEEEC
Confidence            6  3333211100        01135788999999998887643                 4788889988887655443


Q ss_pred             CCC-----CcceEEEccCCCE
Q 017317          216 SLF-----FANGVALSKDEDY  231 (373)
Q Consensus       216 ~~~-----~~~gi~~~~dg~~  231 (373)
                      +..     ....++++++++.
T Consensus       329 gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         329 MHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             CCGGGCSSGGGCCCBCTTSCB
T ss_pred             CcCCcccCCccEEEECCCCCE
Confidence            322     2246788888874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.14  E-value=0.013  Score=51.91  Aligned_cols=201  Identities=13%  Similarity=0.139  Sum_probs=111.0

Q ss_pred             CCcCCcceEEEec---CCC-EEEEe-cCCeEEEEEc-CCceEEeeee--cCccccCeEECCCC-cEEEEEC-CC------
Q 017317           74 GILNGPEDVCVDR---NGV-LYTAT-RDGWIKRLHK-NGTWENWKLI--GGDTLLGITTTQEN-EILVCDA-DK------  137 (373)
Q Consensus        74 g~~~~P~~ia~d~---~G~-l~v~~-~~g~I~~~~~-~g~~~~~~~~--~~~p~~gl~~d~~g-~L~va~~-~~------  137 (373)
                      |..--| .+.+..   ||+ ||+.+ .+++|.+++. +-+...+...  ...++ |++..+++ ..||... ..      
T Consensus        83 GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          83 GDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             CCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSC
T ss_pred             CCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccCC
Confidence            345557 344432   454 67766 7899999994 3343333322  34677 88877655 4666531 11      


Q ss_pred             ------------cE-EEEe-cCC-c--EEEeeccCCccccccceeEEcCCCc-EEEEeCCccccccc---------c---
Q 017317          138 ------------GL-LKVT-EEG-V--TVLASHVNGSRINLADDLIAATDGS-IYFSVASTKFGLHN---------W---  187 (373)
Q Consensus       138 ------------gl-~~~~-~~g-~--~~l~~~~~~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~---------~---  187 (373)
                                  ++ -.+| .+. +  ++..   .    ..+..+.+++||+ +|+++..++-+..-         +   
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V---~----g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V  233 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAWQVLV---S----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV  233 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEEEEEE---S----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred             CCccccchhhcceEEEEEecCCceEEEEeee---C----CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEE
Confidence                        11 2344 333 1  2211   1    1466889999996 55555433322111         0   


Q ss_pred             --cccccc----c--cCCceEEEEeCCCC---eEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEec-------C
Q 017317          188 --GLDLLE----A--KPHGKLLKYDPSLN---ETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLK-------G  249 (373)
Q Consensus       188 --~~~~~~----~--~~~g~l~~~d~~~~---~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-------~  249 (373)
                        ...+.+    +  ...+++-.+|....   .+..+......|+|+.++|||++++++......+.+|++.       +
T Consensus       234 ~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~  313 (459)
T d1fwxa2         234 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE  313 (459)
T ss_dssp             EEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred             echHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc
Confidence              000000    0  11133455665421   2222333446799999999999999999999999999974       1


Q ss_pred             CCCcceeEEec-CCCCCCCceeECCCCCEEEEEec
Q 017317          250 ESKEQTEIFVE-NLPGGPDNIKLAPDGSFWIAILQ  283 (373)
Q Consensus       250 ~~~~~~~~~~~-~~~g~p~~i~~d~dG~lwva~~~  283 (373)
                      ...-......+ .+.-.|-..++|.+|+.|.+..-
T Consensus       314 ~~~~~~~~~~e~elglgPLht~fd~~g~aytslfi  348 (459)
T d1fwxa2         314 NADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL  348 (459)
T ss_dssp             CC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred             cCCccccEEeecccCcCccccccCCCceEEEEeec
Confidence            11111112222 22234777889999999999764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.052  Score=44.81  Aligned_cols=184  Identities=13%  Similarity=0.088  Sum_probs=94.6

Q ss_pred             CCcceEEEecCCCEEEEecCCeEEEEE-cCCceEEeeeecCccccCeEECCCC-cEEEEECCCc-EEEEecCCcEEEeec
Q 017317           77 NGPEDVCVDRNGVLYTATRDGWIKRLH-KNGTWENWKLIGGDTLLGITTTQEN-EILVCDADKG-LLKVTEEGVTVLASH  153 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~v~~~~g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g-~L~va~~~~g-l~~~~~~g~~~l~~~  153 (373)
                      ..|..++..+++.+++...++.+..++ .+++..........   ..++.+++ .+.++....+ +..++....+.... 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~-  156 (287)
T d1pgua2          81 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP---GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD-  156 (287)
T ss_dssp             SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC---EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE-
T ss_pred             cceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce---eeeeeccCcceeeeccccceeeeeeccccceeee-
Confidence            457778888888888777777788777 44443322221122   22333444 4555554444 44444222111111 


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee-cC-CCCcceEEEccC---
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL-DS-LFFANGVALSKD---  228 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~-~~-~~~~~gi~~~~d---  228 (373)
                      ........+..++++++|...++..                 ..|.|..+|..+++..... .. ....+.++++|+   
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGD-----------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             eeeccCCceeEEEeccCcccccccc-----------------ccccccceeecccccccccccccccccceeeecccccc
Confidence            1111122467899999997554432                 2478888998776654321 11 122345666654   


Q ss_pred             -------CCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecC
Q 017317          229 -------EDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       229 -------g~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~  284 (373)
                             ++ ++++...++.|+.|++.... ..... ...-.+....+++.+++.+..+..++
T Consensus       220 ~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~-~~~~~-~~~h~~~V~~v~~~~~~~l~s~g~D~  279 (287)
T d1pgua2         220 ANEEEIEED-LVATGSLDTNIFIYSVKRPM-KIIKA-LNAHKDGVNNLLWETPSTLVSSGADA  279 (287)
T ss_dssp             ----CCSCC-EEEEEETTSCEEEEESSCTT-CCEEE-TTSSTTCEEEEEEEETTEEEEEETTS
T ss_pred             cccccCCCC-eeEeecCCCeEEEEECCCCC-eEEEE-eCCCCCCeEEEEECCCCEEEEEECCC
Confidence                   34 45555566778888865321 11111 11112234556666777655544443

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=97.07  E-value=0.03  Score=43.51  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=95.4

Q ss_pred             CCccccceeEeccCCcCCcceEEEecCCCEEEEecCCeEEEEEc----CCc----eEEeeeecC--ccccCeEECCCCcE
Q 017317           61 TTSDIQSVTRLGEGILNGPEDVCVDRNGVLYTATRDGWIKRLHK----NGT----WENWKLIGG--DTLLGITTTQENEI  130 (373)
Q Consensus        61 ~~~~l~~~~~~~~g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~----~g~----~~~~~~~~~--~p~~gl~~d~~g~L  130 (373)
                      .++.+..+.++..+.+..-.-|++.|+|+||.-.. +.+++=..    +..    .+.+-. ++  +-. -|.+||.|-|
T Consensus        24 ~dn~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG~-ggWn~Fk-flffdP~G~L  100 (235)
T d1tl2a_          24 NDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIGN-GGWNQFQ-FLFFDPNGYL  100 (235)
T ss_dssp             TCCHHHHSEEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEEC-SCGGGCS-EEEECTTSCE
T ss_pred             cccccchhhhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhccc-CcccceE-EEEECCCceE
Confidence            34456678888887788888899999999996443 46665431    111    122211 11  123 5788999999


Q ss_pred             EEEECCCcEEEEe-cCC-cE-EE--eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeC
Q 017317          131 LVCDADKGLLKVT-EEG-VT-VL--ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDP  205 (373)
Q Consensus       131 ~va~~~~gl~~~~-~~g-~~-~l--~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~  205 (373)
                      |+.+. ..|++-. ++. .+ .+  +.......-+....|.+||+|.||....                   ..+++-.|
T Consensus       101 yaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~-------------------~~l~k~~p  160 (235)
T d1tl2a_         101 YAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG-------------------QQFYKALP  160 (235)
T ss_dssp             EEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET-------------------TEEEEECC
T ss_pred             EEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC-------------------CcEEEcCC
Confidence            98875 4677766 332 11 11  1111112233445688999999998754                   35777666


Q ss_pred             CCCe-------EEEee-cCCCCcceEEEccCCCEEEEEeCCCCeEEE
Q 017317          206 SLNE-------TSILL-DSLFFANGVALSKDEDYLVVCETFKFRCLK  244 (373)
Q Consensus       206 ~~~~-------~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~  244 (373)
                      -.+.       -+.+. ..-..+..+.|++||+ ||++..  ..+++
T Consensus       161 P~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~~--g~~Y~  204 (235)
T d1tl2a_         161 PVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQG--GKFYE  204 (235)
T ss_dssp             CSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEET--TEEEE
T ss_pred             CCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEeC--CeEEe
Confidence            5432       12233 2334567899999998 887743  34544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.082  Score=43.42  Aligned_cols=218  Identities=13%  Similarity=0.096  Sum_probs=109.9

Q ss_pred             CcceEEEecCCCEEE-EecCCeEEEEEc-CCceEEe-eeecCccccCeEECCCCcEEE-EECCCcEEEEe-cCC--cEEE
Q 017317           78 GPEDVCVDRNGVLYT-ATRDGWIKRLHK-NGTWENW-KLIGGDTLLGITTTQENEILV-CDADKGLLKVT-EEG--VTVL  150 (373)
Q Consensus        78 ~P~~ia~d~~G~l~v-~~~~g~I~~~~~-~g~~~~~-~~~~~~p~~gl~~d~~g~L~v-a~~~~gl~~~~-~~g--~~~l  150 (373)
                      ...+++..+++.+.+ +..++.+..++. ..+.... ........ .+.+.++++..+ +.....+..++ .++  ...+
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  139 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  139 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEeeecccccccccccccccccccccccccccccccccccce-eeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence            345677777777664 445555555552 2222211 11123334 677778886554 44434455556 555  3333


Q ss_pred             eeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCC-CCcce-------
Q 017317          151 ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSL-FFANG-------  222 (373)
Q Consensus       151 ~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~-~~~~g-------  222 (373)
                      ...     ......++++++|.+.++.+.                 .+.+..++..+++........ .....       
T Consensus       140 ~~~-----~~~~~~~~~~~~~~~l~~~~~-----------------d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  197 (317)
T d1vyhc1         140 TGH-----REWVRMVRPNQDGTLIASCSN-----------------DQTVRVWVVATKECKAELREHRHVVECISWAPES  197 (317)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEET-----------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             ccC-----CCcceeeecccCCCEEEEEeC-----------------CCeEEEEeeccceeeEEEecCCCCceEEEEeecc
Confidence            211     124567888999987666432                 345666665544433222111 11111       


Q ss_pred             -------------EEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEEecCCCchh
Q 017317          223 -------------VALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAILQLSSPGL  289 (373)
Q Consensus       223 -------------i~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~~~~~~~~~  289 (373)
                                   .....++. ++++...++.|..++....+  ....+. .-......+++.++|++.++....     
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d-----  268 (317)
T d1vyhc1         198 SYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCADD-----  268 (317)
T ss_dssp             GGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEETT-----
T ss_pred             ccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEECC-----
Confidence                         22233444 34444455677777754321  111222 112334567888999766554322     


Q ss_pred             hhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeC-C-EEEEeeC
Q 017317          290 EFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFD-D-HLYLGSL  360 (373)
Q Consensus       290 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~-g-~L~vgs~  360 (373)
                                                   +.+..+| .+++.+..+....    ..++.+.... + .|..|+.
T Consensus       269 -----------------------------g~i~iwd~~~~~~~~~~~~h~----~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         269 -----------------------------KTLRVWDYKNKRCMKTLNAHE----HFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             -----------------------------TEEEEECCTTSCCCEEEECCS----SCEEEEEECSSSSCEEEEET
T ss_pred             -----------------------------CeEEEEECCCCcEEEEEcCCC----CCEEEEEEcCCCCEEEEEeC
Confidence                                         2466677 4677788876544    3477777653 3 5665554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.0099  Score=52.44  Aligned_cols=115  Identities=9%  Similarity=0.063  Sum_probs=68.2

Q ss_pred             cccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeec--cCCccccccceeEEcCCCcEEEEeCCccccccccccccc
Q 017317          118 TLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASH--VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLL  192 (373)
Q Consensus       118 p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~--~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~  192 (373)
                      .. .+++.++|.|..+...+.|..++ .++  ...+...  ..+ ....++++++.|||++.++.+..            
T Consensus       187 ~~-~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~D------------  252 (393)
T d1sq9a_         187 AT-SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHDS------------  252 (393)
T ss_dssp             CC-EEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEEE------------
T ss_pred             EE-EEEECCCCEEEEEeCCCcEEEEeeccccccccccccccccc-ccceEEEcccccccceeeeecCC------------
Confidence            34 67888888666665555566677 555  2222111  111 12357889999999887775320            


Q ss_pred             cccCCceEEEEeCCCCeEEEeecC--------------CCCcceEEEccCCCEEEEEeCCCCeEEEEEecC
Q 017317          193 EAKPHGKLLKYDPSLNETSILLDS--------------LFFANGVALSKDEDYLVVCETFKFRCLKYWLKG  249 (373)
Q Consensus       193 ~~~~~g~l~~~d~~~~~~~~~~~~--------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~  249 (373)
                        ...+.+..+|.++++.......              ...-..++|+||++ ++++...++.|..++++.
T Consensus       253 --~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         253 --NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             --TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT
T ss_pred             --CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCC
Confidence              0113455667776654332211              11235689999998 556666777888888754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.17  Score=41.15  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=56.0

Q ss_pred             eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCC--eEEEEEecCCCCcceeEEecCCCCCCCceeECCCCC
Q 017317          199 KLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKF--RCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGS  276 (373)
Q Consensus       199 ~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~  276 (373)
                      .++.++.+++....+...........+++|++.+++......  .++.++..+   +..+..  ...+.-....+++||+
T Consensus       152 ~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~---~~~~~~--~~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         152 QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT---GGVQVL--SSTFLDETPSLAPNGT  226 (269)
T ss_dssp             EEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT---CCEEEC--CCSSSCEEEEECTTSS
T ss_pred             eEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccc---ccceEe--ecCccccceEECCCCC
Confidence            466666655544443333333345679999998887665443  344444322   222221  1222233457899997


Q ss_pred             -E-EEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEECCCCcEEEEEeCCCC
Q 017317          277 -F-WIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVAANGIVIRKFEDPNG  339 (373)
Q Consensus       277 -l-wva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g  339 (373)
                       | |++...+                                 ...+..++.+|+..+.+....|
T Consensus       227 ~i~f~s~~~~---------------------------------~~~l~~~~~dg~~~~~lt~~~g  258 (269)
T d2hqsa1         227 MVIYSSSQGM---------------------------------GSVLNLVSTDGRFKARLPATDG  258 (269)
T ss_dssp             EEEEEEEETT---------------------------------EEEEEEEETTSCCEEECCCSSS
T ss_pred             EEEEEEcCCC---------------------------------CcEEEEEECCCCCEEEEeCCCC
Confidence             3 4443332                                 1346778888887776665554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.38  E-value=0.19  Score=40.97  Aligned_cols=80  Identities=15%  Similarity=0.043  Sum_probs=41.4

Q ss_pred             CeEEEEE-cCCceEEeeeecCccccCeEECCCCc-E-EEEECC-----CcEEEEe-cCC-cEEEeeccC--Cccccccce
Q 017317           97 GWIKRLH-KNGTWENWKLIGGDTLLGITTTQENE-I-LVCDAD-----KGLLKVT-EEG-VTVLASHVN--GSRINLADD  164 (373)
Q Consensus        97 g~I~~~~-~~g~~~~~~~~~~~p~~gl~~d~~g~-L-~va~~~-----~gl~~~~-~~g-~~~l~~~~~--~~~~~~~~~  164 (373)
                      |.|+.++ ..|+.+.+....+... +.++.+||+ | |+....     ..++.++ .+| .+.+.....  .........
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~   99 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVIN-NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDV   99 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEE-EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEE
T ss_pred             CcEEEEECCCCCEEEEecCCCccc-CEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccc
Confidence            4455555 3344444433334445 778899996 3 333321     1377777 455 554432111  111123456


Q ss_pred             eEEcCCCc-EEEEe
Q 017317          165 LIAATDGS-IYFSV  177 (373)
Q Consensus       165 l~~~~dG~-l~v~~  177 (373)
                      .++.+||+ |+++.
T Consensus       100 ~~~spdg~~l~~~~  113 (281)
T d1k32a2         100 AGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECTTCCEEEEEC
T ss_pred             cccCCCCCEEEEEE
Confidence            78899995 56654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.32  E-value=0.4  Score=44.18  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeee-----------cCccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEee
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLI-----------GGDTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~-----------~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      +|.||+++.++.|+.+| .+|+..-....           +.....+++.. ++++|+++....|+.+| .+| ...-..
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee-CCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            69999999999999999 67764321110           00111144443 56789988777899999 777 322221


Q ss_pred             ccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          153 HVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       153 ~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ............--.--+|.+++......            ....|.|..+|..+|+...
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEE
T ss_pred             ccCcccceeeeeeeeeecCccccccccee------------ccccceEEEEECCCceEEe
Confidence            11111111111111112567777654311            1234678888888887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.03  E-value=0.055  Score=48.65  Aligned_cols=118  Identities=13%  Similarity=0.010  Sum_probs=71.7

Q ss_pred             CeEECCCCcEEEEECCCcEEEEe-cCC-cEEEeeccC-CccccccceeEEcCCCc-EEEEeCCccccccccccccccccC
Q 017317          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVLASHVN-GSRINLADDLIAATDGS-IYFSVASTKFGLHNWGLDLLEAKP  196 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~~~~-~~~~~~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~  196 (373)
                      .+.+-+++.++..+ .++++.++ .+| .+.+..... ......+.++.+.|||+ |.++...         ..+.....
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~---------~~~~r~s~   90 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY---------VKQWRHSY   90 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEE---------EECSSSCE
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECC---------cceeeecc
Confidence            66777777765544 46788899 677 554443211 11123467889999996 4443211         01111123


Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCC
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGE  250 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~  250 (373)
                      .+.++.+|..+++...+.........+.|+|||+.+.+..  ++.++.++..+.
T Consensus        91 ~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             CceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence            4678999999887665443333345688999999887764  456777776544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.35  Score=39.86  Aligned_cols=143  Identities=12%  Similarity=0.076  Sum_probs=73.0

Q ss_pred             EEEecCCC-EEEEecCCeEEEEE-cCCceEE-eeeecCccccCeEECCCCcEEEEECCCcEEEEe-cCC--cEEEeeccC
Q 017317           82 VCVDRNGV-LYTATRDGWIKRLH-KNGTWEN-WKLIGGDTLLGITTTQENEILVCDADKGLLKVT-EEG--VTVLASHVN  155 (373)
Q Consensus        82 ia~d~~G~-l~v~~~~g~I~~~~-~~g~~~~-~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g--~~~l~~~~~  155 (373)
                      .....++. +.+++.+|.|..++ ..++... +........ ++.+++ ..|+.+...+.+..++ ...  ...+...  
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--  256 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKD-NILVSGNADSTVKIWDIKTGQCLQTLQGP--  256 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEEET-TEEEEEETTSCEEEEETTTCCEEEEECST--
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccccee-EEecCC-CEEEEEcCCCEEEEEeccccccccccccc--
Confidence            34444454 44777889999888 4444322 222122233 555543 2455555555566677 444  2222211  


Q ss_pred             CccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecC-----CCCcceEEEccCC
Q 017317          156 GSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDS-----LFFANGVALSKDE  229 (373)
Q Consensus       156 ~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~-----~~~~~gi~~~~dg  229 (373)
                        ..+...-.++..++++.++.+.                 .|.|..+|..+++... +...     ......+++++++
T Consensus       257 --~~~~~~~~~~~~~~~~~~s~s~-----------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~  317 (342)
T d2ovrb2         257 --NKHQSAVTCLQFNKNFVITSSD-----------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK  317 (342)
T ss_dssp             --TSCSSCEEEEEECSSEEEEEET-----------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred             --ceeeeceeecccCCCeeEEEcC-----------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence              1111122334445666665432                 4788889988776432 2211     1123568899998


Q ss_pred             CEEEEEeCCC----CeEEEEEec
Q 017317          230 DYLVVCETFK----FRCLKYWLK  248 (373)
Q Consensus       230 ~~l~v~~~~~----~~i~~~~~~  248 (373)
                      . ++++...+    .+|+.+|++
T Consensus       318 ~-~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         318 L-VCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             E-EEEEECSSSSSCCEEEEEECC
T ss_pred             C-EEEEEeCCCCCeeEEEEEeCC
Confidence            6 44443322    357777754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.60  E-value=0.22  Score=40.47  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=49.7

Q ss_pred             ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC--CC---CeEEEEEecCCCCcceeEE---ecCCCCCCCce
Q 017317          198 GKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET--FK---FRCLKYWLKGESKEQTEIF---VENLPGGPDNI  269 (373)
Q Consensus       198 g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~---~~i~~~~~~~~~~~~~~~~---~~~~~g~p~~i  269 (373)
                      +.||.+|.++++.+.+..........+|||||+.|.++..  ..   ..|++++..+.........   ...........
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~  100 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVA  100 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccccc
Confidence            5799999988888777655555677899999998887642  11   2477777655422111000   00001123456


Q ss_pred             eECCCCCEEEEE
Q 017317          270 KLAPDGSFWIAI  281 (373)
Q Consensus       270 ~~d~dG~lwva~  281 (373)
                      ...+||+..+-+
T Consensus       101 ~~spdg~~l~~~  112 (281)
T d1k32a2         101 GFDPDGNLIIST  112 (281)
T ss_dssp             EECTTCCEEEEE
T ss_pred             ccCCCCCEEEEE
Confidence            677888754433

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.57  Score=38.45  Aligned_cols=137  Identities=12%  Similarity=0.014  Sum_probs=71.0

Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEecCCCCCC-CceeECCCC
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFVENLPGGP-DNIKLAPDG  275 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p-~~i~~d~dG  275 (373)
                      .|.|..+|...++........ ...-.+++++++ ++++...++.|..|+....+.  ...+. ...... .-.++..++
T Consensus       196 dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~  270 (342)
T d2ovrb2         196 DTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQC--LQTLQ-GPNKHQSAVTCLQFNK  270 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-CSCEEEEEEETT-EEEEEETTSCEEEEETTTCCE--EEEEC-STTSCSSCEEEEEECS
T ss_pred             CCeEEEeecccceeeeEeccc-ccceeEEecCCC-EEEEEcCCCEEEEEecccccc--ccccc-ccceeeeceeecccCC
Confidence            467888887766544332221 122234555666 445555667888888654321  12222 111111 223344556


Q ss_pred             CEEEEEecCCCchhhhccCChHHHHHHHhcchhhhhccCCCccEEEEEEC-CCCcEEEEEeC-CCCceecceeEEEEeCC
Q 017317          276 SFWIAILQLSSPGLEFVHTSKATKHLLAAFPKLIKLVAPLHKKAAVVNVA-ANGIVIRKFED-PNGKVMSFVTSALEFDD  353 (373)
Q Consensus       276 ~lwva~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~-~~g~~~~~~~~~~~~~g  353 (373)
                      ++.++....                                  +.|..+| .+|+.+..+.. ..+.....++.+...++
T Consensus       271 ~~~~s~s~D----------------------------------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         271 NFVITSSDD----------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             SEEEEEETT----------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             CeeEEEcCC----------------------------------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            665554322                                  3466677 46888877753 22222345778887765


Q ss_pred             EEEEee--CCC---CeEEEeeCCC
Q 017317          354 HLYLGS--LNT---NFIGKLPLKA  372 (373)
Q Consensus       354 ~L~vgs--~~~---~~i~~~~l~~  372 (373)
                      ..++.+  ..+   -+|...+++.
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            444433  322   2477777654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.88  Score=40.62  Aligned_cols=148  Identities=11%  Similarity=0.075  Sum_probs=73.9

Q ss_pred             eEECCCCcEEEEE--CCC---cEEEEe-cCC-cEEEeeccCCcccc-ccceeEEcCCCc-EEEEeCCccccccccccccc
Q 017317          122 ITTTQENEILVCD--ADK---GLLKVT-EEG-VTVLASHVNGSRIN-LADDLIAATDGS-IYFSVASTKFGLHNWGLDLL  192 (373)
Q Consensus       122 l~~d~~g~L~va~--~~~---gl~~~~-~~g-~~~l~~~~~~~~~~-~~~~l~~~~dG~-l~v~~~~~~~~~~~~~~~~~  192 (373)
                      +.+.+++++++..  ...   .+..++ .+| .+.+.......=.. ......+.+||. +++....             
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s-------------  326 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI-------------  326 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE-------------
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee-------------
Confidence            3456777776652  222   355666 567 55443322111001 122457788884 3332111             


Q ss_pred             cccCCceEEEEeC-------CCCeEEEeecCCCC-cceEEEccCCCEEEEEeCC----CCeEEEEEecCCCCcceeEEec
Q 017317          193 EAKPHGKLLKYDP-------SLNETSILLDSLFF-ANGVALSKDEDYLVVCETF----KFRCLKYWLKGESKEQTEIFVE  260 (373)
Q Consensus       193 ~~~~~g~l~~~d~-------~~~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~  260 (373)
                      +..+.+.+++++.       .++..+.+-.+... ..-++++.+++.+|++.+.    ...++++.++|....+  ....
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~--~lt~  404 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ--CLSC  404 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB--CSST
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce--eecc
Confidence            1112345666642       22222222222222 2345789999999987653    2358888777643222  1110


Q ss_pred             CC--CCCCCceeECCCCCEEEEEecC
Q 017317          261 NL--PGGPDNIKLAPDGSFWIAILQL  284 (373)
Q Consensus       261 ~~--~g~p~~i~~d~dG~lwva~~~~  284 (373)
                      .+  ...-..+.++++|.+++-+..+
T Consensus       405 ~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         405 DLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             TSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeec
Confidence            10  1112357789999999877765

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.21  E-value=0.29  Score=37.84  Aligned_cols=138  Identities=12%  Similarity=0.003  Sum_probs=76.4

Q ss_pred             CeEECCCCcEEEEECCCcEEEEe-cCC-cEEE---eeccCCccccccceeEEcCCCcEEEEeCCcccccccccccccccc
Q 017317          121 GITTTQENEILVCDADKGLLKVT-EEG-VTVL---ASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAK  195 (373)
Q Consensus       121 gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l---~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  195 (373)
                      -|+++++|+||....+ .++.=. ++- .+..   ++.+.....+.-..+.+||+|-||..+.                 
T Consensus        44 ~i~fsP~G~LyaVr~~-~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt~-----------------  105 (235)
T d1tl2a_          44 FLFLSPGGELYGVLND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVSK-----------------  105 (235)
T ss_dssp             EEEECTTSCEEEEETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEET-----------------
T ss_pred             EEEECCCCcEEEEECC-eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEecC-----------------
Confidence            4788999999987643 455543 221 1111   1112112223344678999999998763                 


Q ss_pred             CCceEEEEeCCCCeEEE-------eec-CCCCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCC----cceeEEecCCC
Q 017317          196 PHGKLLKYDPSLNETSI-------LLD-SLFFANGVALSKDEDYLVVCETFKFRCLKYWLKGESK----EQTEIFVENLP  263 (373)
Q Consensus       196 ~~g~l~~~d~~~~~~~~-------~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~  263 (373)
                        +.|||-.|-+.+.+.       +.. +-..-.-+-|+|+|. ||.++..  ++++-......-    ...+.+....-
T Consensus       106 --~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~~~--~l~k~~pP~~~~d~WL~~st~igr~~w  180 (235)
T d1tl2a_         106 --DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVHGQ--QFYKALPPVSNQDNWLARATKIGQGGW  180 (235)
T ss_dssp             --TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEETT--EEEEECCCSSTTCCHHHHCEEEESSSG
T ss_pred             --cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEECC--cEEEcCCCCCCCchhhhhhhhhccCcc
Confidence              588888776654332       111 111123567899997 8888543  577654221110    11112221111


Q ss_pred             CCCCceeECCCCCEEEEE
Q 017317          264 GGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       264 g~p~~i~~d~dG~lwva~  281 (373)
                      ..+.-+.+.++|+||-..
T Consensus       181 ~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         181 DTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             GGEEEEEECTTSCEEEEE
T ss_pred             cCceEEEECCCCcEEEEe
Confidence            134457889999999884

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.18  E-value=0.82  Score=39.21  Aligned_cols=182  Identities=13%  Similarity=0.156  Sum_probs=92.3

Q ss_pred             cCCCEEEEe-cCCeEEEEEcCCceEEeeeecCccccCeE------ECCCCc-EEEE-ECC---Cc--EEEEe-cCC-cEE
Q 017317           86 RNGVLYTAT-RDGWIKRLHKNGTWENWKLIGGDTLLGIT------TTQENE-ILVC-DAD---KG--LLKVT-EEG-VTV  149 (373)
Q Consensus        86 ~~G~l~v~~-~~g~I~~~~~~g~~~~~~~~~~~p~~gl~------~d~~g~-L~va-~~~---~g--l~~~~-~~g-~~~  149 (373)
                      |+..|.+|+ .+++|+.++.+|+...+.. .++++ .+-      +..+.. +.++ +..   ..  ++.++ ..+ ++.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECC-SSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            455666666 5567999998887655432 35554 333      222221 3333 332   13  34444 333 443


Q ss_pred             EeeccCC--ccccccceeEE--cC-CCcEEEEeCCccccccccccccccccCCceE--EEEeC-CCCeEEE----eecCC
Q 017317          150 LASHVNG--SRINLADDLIA--AT-DGSIYFSVASTKFGLHNWGLDLLEAKPHGKL--LKYDP-SLNETSI----LLDSL  217 (373)
Q Consensus       150 l~~~~~~--~~~~~~~~l~~--~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l--~~~d~-~~~~~~~----~~~~~  217 (373)
                      +......  .....+.+++.  ++ +|.+|+-...                ..|.+  |++.. ..+.+..    .....
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            3221100  11224667776  55 4666544322                12444  34432 2232221    12233


Q ss_pred             CCcceEEEccCCCEEEEEeCCCCeEEEEEecCCCCcceeEEe----cCCCCCCCceeE--CCCCC-EEEEEecCCC
Q 017317          218 FFANGVALSKDEDYLVVCETFKFRCLKYWLKGESKEQTEIFV----ENLPGGPDNIKL--APDGS-FWIAILQLSS  286 (373)
Q Consensus       218 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~g~p~~i~~--d~dG~-lwva~~~~~~  286 (373)
                      ..+.|.+++.+.+.||+++. +.++++|..+...........    ..+.+-|.|+++  .++|. +|+++..+.+
T Consensus       180 ~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            56789999999999999997 468999987633222111111    123344667764  34443 7777766533

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.69  Score=38.16  Aligned_cols=139  Identities=11%  Similarity=-0.044  Sum_probs=73.5

Q ss_pred             cCCcceEEEecCCCEE-EEecCCeEEEEE-cCCceEEeeee-cCccccCeEECCCCcEEEEECCCcEEEEe-cCCcEEEe
Q 017317           76 LNGPEDVCVDRNGVLY-TATRDGWIKRLH-KNGTWENWKLI-GGDTLLGITTTQENEILVCDADKGLLKVT-EEGVTVLA  151 (373)
Q Consensus        76 ~~~P~~ia~d~~G~l~-v~~~~g~I~~~~-~~g~~~~~~~~-~~~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g~~~l~  151 (373)
                      .....++.+++++... ++..++.|..++ .++........ ..... .+++++ ..|+.+...+.|..++ .++.+.+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG-LLRLSD-KFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCC-EEEECS-SEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccccccceeeecccccceEEeeecccccccccccccccccc-cccccc-ceeeeeecccccccccccccceecc
Confidence            3445567777766555 777889898888 45544332222 22334 677753 3455555444466667 55533222


Q ss_pred             eccCCcccccccee-EEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE-eecC-CCCcceEEEccC
Q 017317          152 SHVNGSRINLADDL-IAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI-LLDS-LFFANGVALSKD  228 (373)
Q Consensus       152 ~~~~~~~~~~~~~l-~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~-~~~~-~~~~~gi~~~~d  228 (373)
                      ....     .+..+ ++.+++.+.++.+                  .+.|..+|.++++... ...+ ......++++++
T Consensus       279 ~~~~-----~~~~~~~~~~~~~~l~~g~------------------d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         279 YHHT-----NLSAITTFYVSDNILVSGS------------------ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EECT-----TCCCCCEEEECSSEEEEEE------------------TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             cccC-----CceEEEEEcCCCCEEEEEe------------------CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence            2111     12233 4566778777643                  3678888987776421 1111 112245677765


Q ss_pred             CCEEEEEeCCCCe
Q 017317          229 EDYLVVCETFKFR  241 (373)
Q Consensus       229 g~~l~v~~~~~~~  241 (373)
                        .++++...+++
T Consensus       336 --~~~~~~s~dg~  346 (355)
T d1nexb2         336 --TLVAAVEKDGQ  346 (355)
T ss_dssp             --EEEEEEESSSC
T ss_pred             --eEEEEEECCCc
Confidence              35555444444

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=95.11  E-value=0.71  Score=40.46  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             CCcceEEEec--CCCEEEEecCCeEEEEEcCCc-eEEeeee-------cCccccCeEECCCC--cEEEEECC------Cc
Q 017317           77 NGPEDVCVDR--NGVLYTATRDGWIKRLHKNGT-WENWKLI-------GGDTLLGITTTQEN--EILVCDAD------KG  138 (373)
Q Consensus        77 ~~P~~ia~d~--~G~l~v~~~~g~I~~~~~~g~-~~~~~~~-------~~~p~~gl~~d~~g--~L~va~~~------~g  138 (373)
                      ..-.+|+++|  .+.+|+++..|+|++-+..|+ ++.+...       ..... +|++|+.+  .+|++...      .+
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCcc
Confidence            4456889987  457889998888988764443 4433211       11234 67888763  68987532      34


Q ss_pred             EEEEecCC--cEEEeeccC----CccccccceeEEcCCC--cEEEEeCCccccccccccccccccCCceEEEEeCCCCeE
Q 017317          139 LLKVTEEG--VTVLASHVN----GSRINLADDLIAATDG--SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNET  210 (373)
Q Consensus       139 l~~~~~~g--~~~l~~~~~----~~~~~~~~~l~~~~dG--~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~  210 (373)
                      +++=...|  .+.+.....    .........|+++|..  .||++...                  ++|++=.-.+...
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~------------------~gl~~S~D~G~tW  152 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRT------------------EGIWKSSDRAKTW  152 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSS------------------SCEEEESSTTSSC
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccc------------------cceeeecCCCcee
Confidence            55443444  344332211    1111234568899853  68887543                  5677654333344


Q ss_pred             EEeecC---CCC---cceEEEccC-CCEEEEEeCCCCeEEE
Q 017317          211 SILLDS---LFF---ANGVALSKD-EDYLVVCETFKFRCLK  244 (373)
Q Consensus       211 ~~~~~~---~~~---~~gi~~~~d-g~~l~v~~~~~~~i~~  244 (373)
                      +.+...   ...   ...+.++|. .+.+|++.....+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         153 TNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             EECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             eecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence            433211   111   224667664 4557777666666765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.86  E-value=1.4  Score=40.36  Aligned_cols=129  Identities=16%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             ccceeEeccCCcCCcce--EEEecCCCEEEEec-CCeEEEEE-cC-CceEEeeee----c-------C-ccccCeEECCC
Q 017317           65 IQSVTRLGEGILNGPED--VCVDRNGVLYTATR-DGWIKRLH-KN-GTWENWKLI----G-------G-DTLLGITTTQE  127 (373)
Q Consensus        65 l~~~~~~~~g~~~~P~~--ia~d~~G~l~v~~~-~g~I~~~~-~~-g~~~~~~~~----~-------~-~p~~gl~~d~~  127 (373)
                      |.-++....|...+-++  |.+  +|.||+++. ++.|+.++ .+ |+..-....    .       . ... |+++. +
T Consensus        40 L~~aW~~~~g~~~~~~~tP~v~--~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~r-g~a~~-~  115 (571)
T d2ad6a1          40 VKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-A  115 (571)
T ss_dssp             CEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-T
T ss_pred             ceEEEEEeCCCCCCcccCCEEE--CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCC-cceee-C
Confidence            44455555443222111  333  799999885 68999999 44 764321110    0       0 113 56664 6


Q ss_pred             CcEEEEECCCcEEEEe-cCC-cEEEeec---cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEE
Q 017317          128 NEILVCDADKGLLKVT-EEG-VTVLASH---VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLK  202 (373)
Q Consensus       128 g~L~va~~~~gl~~~~-~~g-~~~l~~~---~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~  202 (373)
                      +++|+++....++.+| ++| ...-...   ..+.....+-  .+ -++.+++.....+            ....|.|+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p--~v-~~~~vivg~~~~~------------~~~~G~v~a  180 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FV-AKDTVLMGCSGAE------------LGVRGAVNA  180 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EE-ETTEEEEECBCGG------------GTCCCEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecC--eE-eCCeEEEeecccc------------ccccCcEEE
Confidence            7999998777799999 788 3322111   1111111111  11 2578888765421            123578999


Q ss_pred             EeCCCCeEEE
Q 017317          203 YDPSLNETSI  212 (373)
Q Consensus       203 ~d~~~~~~~~  212 (373)
                      +|..+|+...
T Consensus       181 ~D~~TG~~~W  190 (571)
T d2ad6a1         181 FDLKTGELKW  190 (571)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCcEEE
Confidence            9988887654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.76  Score=37.18  Aligned_cols=170  Identities=17%  Similarity=0.133  Sum_probs=91.7

Q ss_pred             CCcCCcceEEEecCCCEEEEecCCeEEEEEcCCceEEeeeecCccccCeEECCCCcEEEEECCCcEEEEecCCcEEEeec
Q 017317           74 GILNGPEDVCVDRNGVLYTATRDGWIKRLHKNGTWENWKLIGGDTLLGITTTQENEILVCDADKGLLKVTEEGVTVLASH  153 (373)
Q Consensus        74 g~~~~P~~ia~d~~G~l~v~~~~g~I~~~~~~g~~~~~~~~~~~p~~gl~~d~~g~L~va~~~~gl~~~~~~g~~~l~~~  153 (373)
                      |-...-.++++++   |+.|+.+|.|..++.....   ....+... ++++.+++.++.+... +-+++..  ...  ..
T Consensus        11 gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~~---~~h~~~V~-~~~~~~~~~~~s~s~D-~~v~~w~--~~~--~~   78 (287)
T d1pgua2          11 GHNKGITALTVNP---LISGSYDGRIMEWSSSSMH---QDHSNLIV-SLDNSKAQEYSSISWD-DTLKVNG--ITK--HE   78 (287)
T ss_dssp             CCSSCEEEEETTT---TEEEETTSCEEETTTTEEE---CCCCSCEE-EEECCSTTCCEEEETT-TEEEETT--EEE--EE
T ss_pred             CCCCceEEEEECc---EEEEeCCCeEEEEECCCCC---CCCCCCEE-EEEecCCCeEEEEeec-ccccccc--ccc--cc
Confidence            4334445566654   8889999999988732211   11122334 6777665555554433 3333321  000  00


Q ss_pred             cCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEE
Q 017317          154 VNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLV  233 (373)
Q Consensus       154 ~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~  233 (373)
                      .    ...+..+...+++.+.+....                  ..+..++..+++.......  .....+++++++.++
T Consensus        79 ~----~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  134 (287)
T d1pgua2          79 F----GSQPKVASANNDGFTAVLTND------------------DDLLILQSFTGDIIKSVRL--NSPGSAVSLSQNYVA  134 (287)
T ss_dssp             C----SSCEEEEEECSSSEEEEEETT------------------SEEEEEETTTCCEEEEEEC--SSCEEEEEECSSEEE
T ss_pred             c----ccceeeeeeccCCceEEEeec------------------ccceeeeccceeeeeeccc--cceeeeeeccCccee
Confidence            0    123456677788877766543                  4677777766654433221  234567788888787


Q ss_pred             EEeCCCCeEEEEEecCCCCcceeEEecCCCCCCCceeECCCCCEEEEE
Q 017317          234 VCETFKFRCLKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSFWIAI  281 (373)
Q Consensus       234 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~lwva~  281 (373)
                      ++....+.+..|++....  ..........+....++++++|.+.++.
T Consensus       135 v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~g  180 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETYIAAG  180 (287)
T ss_dssp             EEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             eeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccCccccccc
Confidence            777666667777653211  1111111122335568889999755443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.82  E-value=1.5  Score=40.29  Aligned_cols=112  Identities=13%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEeeee-----------cC-ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEe
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWKLI-----------GG-DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLA  151 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~~~-----------~~-~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~  151 (373)
                      +|.||+++.++.|+.+| .+|+..-....           .. ... ++++. ++++|+++....++.+| .+| ...-.
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccc-cceEE-CCcEEEEecccceeeeccccccceecc
Confidence            79999999999999999 56764321110           00 112 55554 57899998777899999 778 43222


Q ss_pred             eccCCcccc-ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          152 SHVNGSRIN-LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       152 ~~~~~~~~~-~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      ....+.... ....--+--++.+++.....            +....|.|+.+|..+|+...
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGA------------EYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETTTCCEEE
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccc------------cccccceEEEEecCCcccee
Confidence            211111110 11111111267788765431            11234678888888887543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=1.1  Score=36.40  Aligned_cols=66  Identities=15%  Similarity=0.037  Sum_probs=39.2

Q ss_pred             CCcceEEEecCCCEE-EEecCCeEEEEEc-CC-ceEEee---eecCccccCeEECCCC-c-EEEEECCCcEEEEe
Q 017317           77 NGPEDVCVDRNGVLY-TATRDGWIKRLHK-NG-TWENWK---LIGGDTLLGITTTQEN-E-ILVCDADKGLLKVT  143 (373)
Q Consensus        77 ~~P~~ia~d~~G~l~-v~~~~g~I~~~~~-~g-~~~~~~---~~~~~p~~gl~~d~~g-~-L~va~~~~gl~~~~  143 (373)
                      .+-.+|++.|+|.+. +++.+|.|..++. .+ ....+.   ...+... .+++.+++ . |..+...+.+..++
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE-EEEEeCCCCCEEEEcccccceeeee
Confidence            445779999987765 6778999988882 22 221111   1223345 78887654 3 34445544566666

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=1.3  Score=35.40  Aligned_cols=61  Identities=11%  Similarity=0.025  Sum_probs=42.8

Q ss_pred             eeEEcCCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC
Q 017317          164 DLIAATDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK  239 (373)
Q Consensus       164 ~l~~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  239 (373)
                      ..++.||| .|.|+...               .....++.++..++..+.+...........+++||+.++......
T Consensus        43 sP~wSPDGk~IAf~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~  104 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFE---------------SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT  104 (269)
T ss_dssp             EEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             eeEECCCCCEEEEEEee---------------ccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC
Confidence            45899999 46555322               133568888888777776666556667788999999887765544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.27  E-value=2.4  Score=37.11  Aligned_cols=85  Identities=9%  Similarity=0.081  Sum_probs=51.6

Q ss_pred             CceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeCCC------CeEEEEEecCCCCcceeEEecCCCCCC---C
Q 017317          197 HGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCETFK------FRCLKYWLKGESKEQTEIFVENLPGGP---D  267 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~g~p---~  267 (373)
                      ...||.++.+++....+..+.....++ ++.|++.+|++.+..      ..|+++.+++...  .......+.+..   .
T Consensus       343 ~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~--~~~lt~~~~~~~~~~~  419 (470)
T d2bgra1         343 YRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK--VTCLSCELNPERCQYY  419 (470)
T ss_dssp             CEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC--EEESSTTTSTTTBCBE
T ss_pred             CceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCc--eeEecccccCCCCCEE
Confidence            457999998877776665554444444 556677788765432      2488888776422  222221222222   3


Q ss_pred             ceeECCCCCEEEEEecC
Q 017317          268 NIKLAPDGSFWIAILQL  284 (373)
Q Consensus       268 ~i~~d~dG~lwva~~~~  284 (373)
                      .+++++||++++.+..+
T Consensus       420 s~~fSpdgky~~~~~s~  436 (470)
T d2bgra1         420 SVSFSKEAKYYQLRCSG  436 (470)
T ss_dssp             EEEECTTSSEEEEEECS
T ss_pred             EEEECCCCCEEEEEecC
Confidence            46789999998887765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.69  E-value=2.6  Score=35.91  Aligned_cols=66  Identities=15%  Similarity=0.322  Sum_probs=42.1

Q ss_pred             CCcceEEE--ec-CCCEE--EEecCCeEEEEE----cCCceEE--e--eeecCccccCeEECC-CCcEEEEECCCcEEEE
Q 017317           77 NGPEDVCV--DR-NGVLY--TATRDGWIKRLH----KNGTWEN--W--KLIGGDTLLGITTTQ-ENEILVCDADKGLLKV  142 (373)
Q Consensus        77 ~~P~~ia~--d~-~G~l~--v~~~~g~I~~~~----~~g~~~~--~--~~~~~~p~~gl~~d~-~g~L~va~~~~gl~~~  142 (373)
                      ..+.+++.  ++ +|.+|  +....|.+..+.    .++.+..  +  ...+..+- |+++|. .+.|||++...|++++
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E-GCVvDde~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE-GMAADDEYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE-EEEEETTTTEEEEEETTTEEEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc-eEEEeCCCCcEEEecCccceEEE
Confidence            34666666  55 67776  445678775543    2343221  1  12345567 888884 5689999988999999


Q ss_pred             e
Q 017317          143 T  143 (373)
Q Consensus       143 ~  143 (373)
                      +
T Consensus       207 ~  207 (353)
T d1h6la_         207 S  207 (353)
T ss_dssp             E
T ss_pred             E
Confidence            8

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.43  E-value=3.8  Score=37.21  Aligned_cols=53  Identities=19%  Similarity=0.251  Sum_probs=34.2

Q ss_pred             cEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEee---------------------CCCCeEEEeeCCC
Q 017317          318 KAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGS---------------------LNTNFIGKLPLKA  372 (373)
Q Consensus       318 ~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs---------------------~~~~~i~~~~l~~  372 (373)
                      .+.+..|| .+|+.+-.+..+.+.....++ . ..+|+-||.-                     ..++.|..|.|+.
T Consensus       478 dg~l~A~Da~tGe~LW~~~l~~~~~~~P~t-y-~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g  552 (560)
T d1kv9a2         478 AGQMHAYSADKGEALWQFEAQSGIVAAPMT-F-ELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDG  552 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEE-E-EETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETC
T ss_pred             CCcEEEEECCCCcEeEEEECCCCccccCEE-E-EECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCC
Confidence            45688898 579999999887765332222 2 3567666542                     2346788888775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.35  E-value=0.29  Score=43.11  Aligned_cols=93  Identities=12%  Similarity=0.029  Sum_probs=61.5

Q ss_pred             CCC-cEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEeCCCCeE---
Q 017317          169 TDG-SIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILL--DSLFFANGVALSKDEDYLVVCETFKFRC---  242 (373)
Q Consensus       169 ~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i---  242 (373)
                      .|| .+|+.+.                 .+.+|.++|.++-++..+.  .....+.|+..++++++.||.+.....+   
T Consensus        97 yDGrylFVNDk-----------------an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~p  159 (459)
T d1fwxa2          97 YDGRFLFMNDK-----------------ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  159 (459)
T ss_dssp             EEEEEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             cceeEEEEEcC-----------------CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccC
Confidence            378 4788875                 3689999999988876644  4456678888888888889987555433   


Q ss_pred             ----------------EEEEecCCCCcceeEEecCCCCCCCceeECCCCCE-EEEEe
Q 017317          243 ----------------LKYWLKGESKEQTEIFVENLPGGPDNIKLAPDGSF-WIAIL  282 (373)
Q Consensus       243 ----------------~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~dG~l-wva~~  282 (373)
                                      ..+|.+  +.......  ..++.++++..+.||.+ |+++.
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~--tm~V~~QV--~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDAD--KWEVAWQV--LVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETT--TTEEEEEE--EESSCCCCEEECSSSSEEEEEES
T ss_pred             CCCccccchhhcceEEEEEecC--CceEEEEe--eeCCChhccccCCCCCEEEEEec
Confidence                            334432  21111111  23467899999999985 44443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.77  E-value=4.6  Score=36.75  Aligned_cols=41  Identities=24%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             ccEEEEEEC-CCCcEEEEEeCCCCceecceeEEEEeCCEEEEee
Q 017317          317 KKAAVVNVA-ANGIVIRKFEDPNGKVMSFVTSALEFDDHLYLGS  359 (373)
Q Consensus       317 ~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~~g~L~vgs  359 (373)
                      ..+.+..|| .+||.+-.+..+.+.....++.  ..+|+.||+-
T Consensus       483 ~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty--~~dGkqYi~v  524 (571)
T d2ad6a1         483 LDGYLKALDNKDGKELWNFKMPSGGIGSPMTY--SFKGKQYIGS  524 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEECCCCceecceEE--EECCEEEEEE
Confidence            345688898 5699999988776543222222  3478988844

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.62  E-value=2.4  Score=33.27  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=21.1

Q ss_pred             ccccCeEECCCCcEEEEECCCcEEEEe-cCC-cEEEee
Q 017317          117 DTLLGITTTQENEILVCDADKGLLKVT-EEG-VTVLAS  152 (373)
Q Consensus       117 ~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g-~~~l~~  152 (373)
                      +.. +++.|.+.-.+++....+...+- +.| ++.+..
T Consensus       105 RI~-S~~yddk~vvF~Gased~~~LYviegGklrkL~~  141 (313)
T d2hu7a1         105 RIL-SGVDTGEAVVFTGATEDRVALYALDGGGLRELAR  141 (313)
T ss_dssp             EEE-EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred             EEE-EeeecCceEEEecccCCceEEEEEeCCceeeecc
Confidence            345 66666555567777666655554 556 666654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.21  E-value=3  Score=33.53  Aligned_cols=60  Identities=7%  Similarity=0.109  Sum_probs=41.5

Q ss_pred             ccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEeC
Q 017317          161 LADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSILLDSLFFANGVALSKDEDYLVVCET  237 (373)
Q Consensus       161 ~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  237 (373)
                      .+++|+++|+|.+.++.+.                 .|.|..+|.++++............-++++++++.+.++..
T Consensus       253 ~v~~l~~sp~~~~lasg~~-----------------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTAGS-----------------DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             CEEEEEECTTTCCEEEEET-----------------TSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEE
T ss_pred             cceeEEecCCccEEEEECC-----------------CCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEc
Confidence            4578999999987666543                 47899999887764433333334456889999997776643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.33  E-value=7.6  Score=35.25  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=40.9

Q ss_pred             CCCEEEEecCCeEEEEE-cCCceEEee--eec--C------ccccCeEECCCCcEEEEECCCcEEEEe-cCC
Q 017317           87 NGVLYTATRDGWIKRLH-KNGTWENWK--LIG--G------DTLLGITTTQENEILVCDADKGLLKVT-EEG  146 (373)
Q Consensus        87 ~G~l~v~~~~g~I~~~~-~~g~~~~~~--~~~--~------~p~~gl~~d~~g~L~va~~~~gl~~~~-~~g  146 (373)
                      +|.||+++.++.|+.+| .+|+..-..  ...  .      ... |+++. ++++|+++....++.+| .+|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccC-CceEe-CCceEEecCCCeEEEeccccc
Confidence            69999999999999999 568643211  100  1      112 55554 57899998877899999 677

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.17  E-value=2.3  Score=36.88  Aligned_cols=116  Identities=9%  Similarity=0.059  Sum_probs=65.2

Q ss_pred             cCccccCeEECCCC--cEEEEECCCcEEEEecCC--cEEEeeccC--CccccccceeEEcCC--CcEEEEeCCccccccc
Q 017317          115 GGDTLLGITTTQEN--EILVCDADKGLLKVTEEG--VTVLASHVN--GSRINLADDLIAATD--GSIYFSVASTKFGLHN  186 (373)
Q Consensus       115 ~~~p~~gl~~d~~g--~L~va~~~~gl~~~~~~g--~~~l~~~~~--~~~~~~~~~l~~~~d--G~l~v~~~~~~~~~~~  186 (373)
                      .++.. +|+++|..  .+|++....||++-+..|  .+.+.....  ......+.+|++||.  ..||++....      
T Consensus        11 gg~~~-~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~------   83 (427)
T d2ebsa1          11 GGYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY------   83 (427)
T ss_dssp             CSCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC------
T ss_pred             CCcEE-EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccc------
Confidence            45666 89998755  688887667898776444  444432111  122335678999986  3789876431      


Q ss_pred             cccccccccCCceEEEEeCCCCeEEEeecCC---------CCcceEEEccC-CCEEEEEeCCCCeEEE
Q 017317          187 WGLDLLEAKPHGKLLKYDPSLNETSILLDSL---------FFANGVALSKD-EDYLVVCETFKFRCLK  244 (373)
Q Consensus       187 ~~~~~~~~~~~g~l~~~d~~~~~~~~~~~~~---------~~~~gi~~~~d-g~~l~v~~~~~~~i~~  244 (373)
                            .....++||+=.-.+...+.+....         .....++++|. .+.+|++. ...+|++
T Consensus        84 ------~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~~~gl~~  144 (427)
T d2ebsa1          84 ------VGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWK  144 (427)
T ss_dssp             ------TTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-SSSCEEE
T ss_pred             ------cCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-cccceee
Confidence                  0112346765543333444443221         12235888875 44566654 3456765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=6.9  Score=34.38  Aligned_cols=52  Identities=6%  Similarity=-0.200  Sum_probs=27.2

Q ss_pred             CceEEEEeCCCCeEEEeecCC---C----CcceEEEccCCCEEEEEeCC--CC--eEEEEEecC
Q 017317          197 HGKLLKYDPSLNETSILLDSL---F----FANGVALSKDEDYLVVCETF--KF--RCLKYWLKG  249 (373)
Q Consensus       197 ~g~l~~~d~~~~~~~~~~~~~---~----~~~gi~~~~dg~~l~v~~~~--~~--~i~~~~~~~  249 (373)
                      ...|+.+|.+++.........   .    ....+.+++|++ +++....  .+  .+..++...
T Consensus       227 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~-~~~~~~nR~q~~~~i~~~d~~t  289 (465)
T d1xfda1         227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATT  289 (465)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTT
T ss_pred             ceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe-EEEEEEccccccceEEEEcCCC
Confidence            346788887765543322111   1    123467888886 5554332  22  455566544

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.05  E-value=9.5  Score=34.75  Aligned_cols=112  Identities=15%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             CCCEEEEec-CCeEEEEE-c-CCceEEeeee-----------cCc-cccCeEECCCC-----cEEEEECCCcEEEEe-cC
Q 017317           87 NGVLYTATR-DGWIKRLH-K-NGTWENWKLI-----------GGD-TLLGITTTQEN-----EILVCDADKGLLKVT-EE  145 (373)
Q Consensus        87 ~G~l~v~~~-~g~I~~~~-~-~g~~~~~~~~-----------~~~-p~~gl~~d~~g-----~L~va~~~~gl~~~~-~~  145 (373)
                      +|.||+.+. .+.++.++ . +|+..-....           +.. .. |+++-.+.     .+|+++....|+.+| ++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R-Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc-eeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            689998764 68899998 3 5764321110           011 13 56653221     488888777899999 78


Q ss_pred             C-cEEEeeccCCccccccc-eeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEE
Q 017317          146 G-VTVLASHVNGSRINLAD-DLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSI  212 (373)
Q Consensus       146 g-~~~l~~~~~~~~~~~~~-~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~  212 (373)
                      | ...-....+........ .-.+ -++.+|+..+..++            ...|.|..||..+|+...
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~------------~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGG------------TCCCEEEEEETTTCCEEE
T ss_pred             CceeccccccccccccccccCCcE-ECCeEEEeeccccc------------cccCceEEEECCCCcEEE
Confidence            8 33222111100000111 1111 26788888654222            234788889988887653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.11  E-value=7.4  Score=32.52  Aligned_cols=120  Identities=13%  Similarity=0.077  Sum_probs=66.6

Q ss_pred             cceEEEe-cCCCEEE-EecC-----C------eEEEEE-cCCceEEeeee--c--CccccCeEECCCCcEEEEEC--CCc
Q 017317           79 PEDVCVD-RNGVLYT-ATRD-----G------WIKRLH-KNGTWENWKLI--G--GDTLLGITTTQENEILVCDA--DKG  138 (373)
Q Consensus        79 P~~ia~d-~~G~l~v-~~~~-----g------~I~~~~-~~g~~~~~~~~--~--~~p~~gl~~d~~g~L~va~~--~~g  138 (373)
                      +...++. .+|+||+ |...     +      .+..+| .+++++.....  .  .... +.++..+|++|++-.  ...
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSSTTC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccccee-EEEEecCCcEEEeecCCCcc
Confidence            3344444 4899994 4321     1      245677 44555432211  1  1123 567788999998742  245


Q ss_pred             EEEEe-cCC-cEEEeeccCCccccccceeEEcCCCcEEEEeCCccccccccccccccccCCceEEEEeCCCCeEEEe
Q 017317          139 LLKVT-EEG-VTVLASHVNGSRINLADDLIAATDGSIYFSVASTKFGLHNWGLDLLEAKPHGKLLKYDPSLNETSIL  213 (373)
Q Consensus       139 l~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~~~~~~~~  213 (373)
                      +..+| .+. .+.+.....   .+.-...++..||++|+.......           ......+++||+.+++.+.+
T Consensus       100 ~~~yd~~~~~w~~~~~~~~---~r~~~~~~~~~dG~v~v~GG~~~~-----------~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQV---ARGYQSSATMSDGRVFTIGGSWSG-----------GVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSS---CCSSCEEEECTTSCEEEECCCCCS-----------SSCCCCEEEEETTTTEEEEE
T ss_pred             eeEecCccCcccccccccc---cccccceeeecCCceeeecccccc-----------ccccceeeeecCCCCceeec
Confidence            77788 455 444322111   122235677789999987543110           11234688999998887764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.99  E-value=15  Score=33.29  Aligned_cols=19  Identities=5%  Similarity=0.046  Sum_probs=14.1

Q ss_pred             cEEEEEEC-CCCcEEEEEeC
Q 017317          318 KAAVVNVA-ANGIVIRKFED  336 (373)
Q Consensus       318 ~g~v~~~~-~~g~~~~~~~~  336 (373)
                      .|.|..|| .+|+.+-.++.
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEES
T ss_pred             cCceEEEECCCCcEEEEeec
Confidence            46789999 56888877653