Citrus Sinensis ID: 017364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Secondary Structure (PSIPRED)
cEEEEcccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHccccccEEccccHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccEEEEEcccccHHHHHHHHccccccccccEEEEEcccHHHHHHcccccEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccccccccEEEEEEccHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHcHHHHEcccc
Coil and Loop (DISEMBL)
mifpifydlepttvRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANIsgwelkdrnepEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLInkgptdvrmigicgmggigkTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLlnlpdsgvwnvydgMNMIRSRLRHKKVLLVIDDVIELQQLEslagkhdwfgigsriFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKafkshkpwkgyeQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLerdpeneiLDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILnycdfdpiigigglienly
Flexible Loop (DISEMBL)
mifpifydlepttvrKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVAnisgwelkdrnepeFIVDIVKEISckisaksetlkelvgldsRLEKLRFLinkgptdvrmIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLEslagkhdwfgiGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Low Complexity Region (SEG)
MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRmigicgmggigKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Disordered region (IsUnstruct)
*IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIE***
Disordered Region (DISOPRED)
MIFPIFYDLEPTTVRKQTASFKEAFLKHEEA*****EKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Disordered Region (DISEMBL)
MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Disordered Region (DISPRO)
MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.970	0.316	0.423	5e-75
O82500	1095	Putative disease resistan	no	no	0.930	0.316	0.360	1e-59
Q9FL92	1372	Probable WRKY transcripti	no	no	0.750	0.204	0.397	6e-51
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.932	0.267	0.335	6e-50
Q9FH83	1288	Probable WRKY transcripti	no	no	0.739	0.214	0.392	3e-47
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.887	0.205	0.342	1e-43
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.946	0.186	0.291	4e-39
Q9SZA7	816	Probable disease resistan	no	no	0.584	0.267	0.310	6e-16
P0C8S1	906	Probable disease resistan	no	no	0.747	0.307	0.288	3e-15
Q9FW44	787	Disease resistance protei	no	no	0.589	0.279	0.303	5e-15

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  281 bits (719), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 161/380 (42%), Positives = 242/380 (63%), Gaps = 18/380 (4%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISG-WELKDR 60
           + PIFYD++P+ VR Q  SF +AF +HE  +++++E +Q+WR +L E AN+ G  + +D+
Sbjct: 101 VIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDK 160

Query: 61  NEPEFIVDIVKEIS---CKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMG 117
            + + I  IV +IS   CKIS     L+ +VG+D+ LEK+  L+  G   VR++GI GMG
Sbjct: 161 TDADCIRQIVDQISSKLCKISLS--YLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMG 218

Query: 118 GIGKTTLARVVYDLI------SHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS 171
           G+GKTT+AR ++D +      S++F+ +CFL +++E   K G+  LQ  L+S+LL    +
Sbjct: 219 GVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKE--NKRGMHSLQNALLSELLR-EKA 275

Query: 172 GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQ-LESLAGKHDWFGIGSRIFITSRDKHL 230
              N  DG + + SRLR KKVL+V+DD+      LE LAG  DWFG GSRI IT+RDKHL
Sbjct: 276 NYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHL 335

Query: 231 LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290
           +  +  D +Y    L   E++ LF   AF    P + +E+LS  VV YA GLPLALKV G
Sbjct: 336 IEKN--DIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWG 393

Query: 291 SFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYV 350
           S L    + EW+SA++ ++ +  + I+D L+IS+DGL+  ++++FLDIACF +G+  DY+
Sbjct: 394 SLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYI 453

Query: 351 TKILNYCDFDPIIGIGGLIE 370
            +IL  C      G+  LI+
Sbjct: 454 LQILESCHIGAEYGLRILID 473

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 216/361 (59%), Gaps = 14/361 (3%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD-R 60
           + P+FY ++P+ +RKQT  F  +FL  E    +  E+   WR +L + ANI G   ++  
Sbjct: 99  VMPVFYKVDPSDIRKQTGKFGMSFL--ETCCGKTEERQHNWRRALTDAANILGDHPQNWD 156

Query: 61  NEPEFIVDIVKEISCKISA-KSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGI 119
           NE   I  I K++  K++A  S    +LVG+++ + K+  L+      VR++GI G  G+
Sbjct: 157 NEAYKITTISKDVLEKLNATPSRDFNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPAGV 216

Query: 120 GKTTLARVVYDLISHEFEASCFLANVREISKKSGL------VFLQKQLISQLLNLPDSGV 173
           GKTT+AR +Y+     F  S F+ NVRE   ++GL      + LQ++ +S+LL+  D  V
Sbjct: 217 GKTTIARALYNQYHENFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLRV 276

Query: 174 WNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA 233
            +    +  I  RL+ +KVL+++DDV  ++QL++LA ++ WFG  SRI +T+++K LL++
Sbjct: 277 RH----LGAIEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVS 332

Query: 234 HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293
           H ++ +Y   + +  EAL +FC  AFK   P    + L+      AG LPLAL+VLGSF+
Sbjct: 333 HDINHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFM 392

Query: 294 FGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKI 353
            G+   EWE +L  L+   + E+  VL++ +DGL + EK +FL IAC + G++ +Y+ ++
Sbjct: 393 RGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQM 452

Query: 354 L 354
           +
Sbjct: 453 I 453

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  201 bits (512), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 114/287 (39%), Positives = 172/287 (59%), Gaps = 7/287 (2%)

Query: 86  ELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN- 144
           E +G+ S+L ++  +INK P D+R +GI GM GIGKTTLA+ V+D +S EF+A CF+ + 
Sbjct: 141 ERIGIYSKLLEIEKMINKQPLDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFIEDY 200

Query: 145 VREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQ 204
            + I +K     L++Q + +     ++G       ++++R RL +K+VL+V+DDV     
Sbjct: 201 TKAIQEKGVYCLLEEQFLKE-----NAGASGTVTKLSLLRDRLNNKRVLVVLDDVRSPLV 255

Query: 205 LESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKP 264
           +ES  G  DWFG  S I ITS+DK +     V+++Y  + LN  EAL LF L A      
Sbjct: 256 VESFLGGFDWFGPKSLIIITSKDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMA 315

Query: 265 WKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRT-IAEWESALQRLERDPENEILDVLQIS 323
            +   ++S  V+KYA G PLAL + G  L G+    E E A  +L+  P    +D ++ S
Sbjct: 316 EQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSS 375

Query: 324 FDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIE 370
           +D L + EK IFLDIACF++G+ +DYV ++L  C F P +GI  L+E
Sbjct: 376 YDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVE 422

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  198 bits (503), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 206/358 (57%), Gaps = 10/358 (2%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD- 59
           M+ PIF+ ++ + V+KQT  F + F +  +A  E+ EK Q W+ +L  VA ++G++L+  
Sbjct: 98  MVIPIFFHVDASEVKKQTGEFGKVFEETCKAKSED-EK-QSWKQALAAVAVMAGYDLRKW 155

Query: 60  RNEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVR-MIGICGMGG 118
            +E   I ++ +++  K    S+   +LVG+++ +E ++ ++     + R M+GI G  G
Sbjct: 156 PSEAAMIEELAEDVLRKTMTPSDDFGDLVGIENHIEAIKSVLCLESKEARIMVGIWGQSG 215

Query: 119 IGKTTLARVVYDLISHEFEASCFLA-NVREISKKSGL-VFLQKQLISQLLNLPDSGVWNV 176
           IGK+T+ R +Y  +S +F    F+       S  SG+ +  +K+L+S++L   D  +   
Sbjct: 216 IGKSTIGRALYSKLSIQFHHRAFITYKSTSGSDVSGMKLRWEKELLSEILGQKDIKI--- 272

Query: 177 YDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV 236
            +   ++  RL+ +KVL+++DDV  L+ L++L GK +WFG GSRI + ++D+ LL AH +
Sbjct: 273 -EHFGVVEQRLKQQKVLILLDDVDSLEFLKTLVGKAEWFGSGSRIIVITQDRQLLKAHEI 331

Query: 237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR 296
           D +Y  E  +   AL + C  AF    P   +++L+  V K AG LPL L VLGS L GR
Sbjct: 332 DLIYEVEFPSEHLALTMLCRSAFGKDSPPDDFKELAFEVAKLAGNLPLGLSVLGSSLKGR 391

Query: 297 TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKIL 354
           T   W   + RL      +I+  L++S+D L + ++ +FL IAC + G  + YV  +L
Sbjct: 392 TKEWWMEMMPRLRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFNGFEVSYVKDLL 449

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 170/285 (59%), Gaps = 9/285 (3%)

Query: 88  VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVRE 147
           +G+ S+L ++  ++NK P  +R +GI GM GIGKTTLA+ V+D +S  F+ASCF+ +  +
Sbjct: 152 IGIYSKLLEIENMVNKQPIGIRCVGIWGMPGIGKTTLAKAVFDQMSSAFDASCFIEDYDK 211

Query: 148 ISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLES 207
              + GL  L   L  QLL   D+ +      ++ +R RL  K+VL+V+DDV      ES
Sbjct: 212 SIHEKGLYCL---LEEQLLPGNDATIMK----LSSLRDRLNSKRVLVVLDDVRNALVGES 264

Query: 208 LAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKA-FKSHKPWK 266
                DW G GS I ITSRDK +    G++++Y  + LN  EA  LF L A  K     +
Sbjct: 265 FLEGFDWLGPGSLIIITSRDKQVFCLCGINQIYEVQGLNEKEARQLFLLSASIKEDMGEQ 324

Query: 267 GYEQLSKSVVKYAGGLPLALKVLGSFLFGRT-IAEWESALQRLERDPENEILDVLQISFD 325
             ++LS  V+ YA G PLA+ V G  L G+  ++E E+A  +L+R P  +I+D  + ++D
Sbjct: 325 NLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYD 384

Query: 326 GLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIE 370
            L + EK IFLDIACF++G+ ++YV ++L  C F P + I  L++
Sbjct: 385 TLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVD 429

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 11/342 (3%)

Query: 34  ENIEKVQKWRDSLKEVANISGWELK--DRN---EPEFIVDIVKEISCKISAKSETLKELV 88
           +++ +V  W +S  E   ++  + K    N   + E + +IV+++  K+        E V
Sbjct: 115 DSLTRVYGWANSWLEAEKLTSHQSKILSNNVLTDSELVEEIVRDVYGKLYPA-----ERV 169

Query: 89  GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREI 148
           G+ +RL ++  L+ K   D+R IGI GM GIGKTTLA+ V++ +S +++ASCF+ N  E 
Sbjct: 170 GIYARLLEIEKLLYKQHRDIRSIGIWGMPGIGKTTLAKAVFNHMSTDYDASCFIENFDEA 229

Query: 149 SKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESL 208
             K GL  L K+ I ++L        +      + R +L  K++L+V+DDV +    ES 
Sbjct: 230 FHKEGLHRLLKERIGKILKDEFDIESSYIMRPTLHRDKLYDKRILVVLDDVRDSLAAESF 289

Query: 209 AGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGY 268
             + DWFG GS I ITS DK +     ++++Y  + LN  EAL LF    F  ++P +  
Sbjct: 290 LKRLDWFGSGSLIIITSVDKQVFAFCQINQIYTVQGLNVHEALQLFSQSVFGINEPEQND 349

Query: 269 EQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLK 328
            +LS  V+ Y  G PLAL + G  L G+  +E E+A   L+  P  +I DVL+ ++  L 
Sbjct: 350 RKLSMKVIDYVNGNPLALSIYGRELMGKK-SEMETAFFELKHCPPLKIQDVLKNAYSALS 408

Query: 329 ETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIE 370
           + EK I LDIA F+KG+ ++YV ++L    + P + I  L++
Sbjct: 409 DNEKNIVLDIAFFFKGETVNYVMQLLEESHYFPRLAIDVLVD 450

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 203/371 (54%), Gaps = 18/371 (4%)

Query: 1    MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
            +++PIFY L P      + +++  +L+ E          +KW+ +LKE+  + G+ L D+
Sbjct: 741  VVYPIFYRLSPYDFVCNSKNYERFYLQDEP---------KKWQAALKEITQMPGYTLTDK 791

Query: 61   NEPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIG 120
            +E E I +IV++ + K+   ++ +  ++G+D ++E++  L+     DVR IGI G  GIG
Sbjct: 792  SESELIDEIVRD-ALKVLCSADKVN-MIGMDMQVEEILSLLCIESLDVRSIGIWGTVGIG 849

Query: 121  KTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYD-G 179
            KTT+A  ++  IS ++E    L ++ +  +  G   +++  +S++L + +  V  + D  
Sbjct: 850  KTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENFLSEVLEV-EPHVIRISDIK 908

Query: 180  MNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239
             + +RSRL+ K++L+++DDV + + +++  G  ++FG GSRI +TSR++ + +   +D V
Sbjct: 909  TSFLRSRLQRKRILVILDDVNDYRDVDTFLGTLNYFGPGSRIIMTSRNRRVFVLCKIDHV 968

Query: 240  YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIA 299
            Y  + L+  ++L L      +     + Y+ LS  +VK++ G P  L+ L S        
Sbjct: 969  YEVKPLDIPKSLLLLDRGTCQIVLSPEVYKTLSLELVKFSNGNPQVLQFLSSI-----DR 1023

Query: 300  EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDF 359
            EW    Q ++      I  + + S  GL + E+ IFLDIACF+     D V  +L+ C F
Sbjct: 1024 EWNKLSQEVKTTSPIYIPGIFEKSCCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGF 1083

Query: 360  DPIIGIGGLIE 370
               +G  GL++
Sbjct: 1084 SAHVGFRGLVD 1094

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 111/251 (44%), Gaps = 33/251 (13%)

Query: 110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLP 169
           + GI GMGG+GKTTLA+     +  + E  C   N     +   L   Q  L+ +L  L 
Sbjct: 202 VFGISGMGGVGKTTLAKE----LQRDHEVQCHFEN-----RILFLTVSQSPLLEELREL- 251

Query: 170 DSGVWNVYDGMNM------IRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFI 223
              +W    G                 + L+++DDV   Q L+ L     +   G    +
Sbjct: 252 ---IWGFLSGCEAGNPVPDCNFPFDGARKLVILDDVWTTQALDRLTS---FKFPGCTTLV 305

Query: 224 TSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGY-EQLSKSVVKYAGGL 282
            SR K           Y  E L+ DEA+ LFCL AF       G+ + L K V     GL
Sbjct: 306 VSRSK----LTEPKFTYDVEVLSEDEAISLFCLCAFGQKSIPLGFCKDLVKQVANECKGL 361

Query: 283 PLALKVLGSFLFGRTIAEWESALQRLER-DP-----ENEILDVLQISFDGLKETEKKIFL 336
           PLALKV G+ L G+    W+  LQRL + +P     E+ +L  ++ S D L +T K  FL
Sbjct: 362 PLALKVTGASLNGKPEMYWKGVLQRLSKGEPADDSHESRLLRQMEASLDNLDQTTKDCFL 421

Query: 337 DIACFYKGKYI 347
           D+  F + + I
Sbjct: 422 DLGAFPEDRKI 432

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 36/315 (11%)

Query: 71  KEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVY- 129
           +EI    S  SE+  +LVGLD  +E+L   + +  + V+++ + GMGGIGKTTLAR V+ 
Sbjct: 149 REIRQTFSRNSES--DLVGLDQSVEELVDHLVENDS-VQVVSVSGMGGIGKTTLARQVFH 205

Query: 130 -DLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNV--YDGMNMIRSR 186
            D++   F+   ++   ++ ++K        Q I Q L   D G+  +  Y     +   
Sbjct: 206 HDIVRRHFDGFSWVCVSQQFTRKDVW-----QRILQDLRPYDEGIIQMDEYTLQGELFEL 260

Query: 187 LRHKKVLLVIDDVIELQQLESLAG----KHDWFGIGSRIFITSRDKHL-LMAHGVDEVYM 241
           L   + LLV+DDV + +  + +      K  W     ++ +TSR++ L L A      + 
Sbjct: 261 LESGRYLLVLDDVWKEEDWDRIKAVFPHKRGW-----KMLLTSRNEGLGLHADPTCFAFR 315

Query: 242 HEHLNYDEALGLF--CLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR-TI 298
              L  +++  LF   + + +    +K  E + K +V Y GGLPLA+KVLG  L  + T+
Sbjct: 316 PRILTPEQSWKLFERIVSSRRDKTEFKVDEAMGKEMVTYCGGLPLAVKVLGGLLAKKHTV 375

Query: 299 AEWESALQR----------LERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYID 348
            EW+               L  D  N +  VL +S++ L    K  F  +A F +   ID
Sbjct: 376 LEWKRVHSNIVTHIVGKSGLSDDNSNSVYRVLSLSYEDLPMQLKHCFFYLAHFPEDYKID 435

Query: 349 YVTKILNYCDFDPII 363
            V  + NY   + II
Sbjct: 436 -VKILFNYWVAEGII 449

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 113/257 (43%), Gaps = 37/257 (14%)

Query: 106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQL 165
           TD  + GI GM G GKTTLA    +L   +     F         K+ ++FL        
Sbjct: 184 TDTHLFGISGMSGSGKTTLA---IELSKDDDVRGLF---------KNKVLFLTVSRSPNF 231

Query: 166 LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITS 225
            NL       +YDG+        H++ L+++DDV   + L+ L  K      GS   + S
Sbjct: 232 ENLESCIREFLYDGV--------HQRKLVILDDVWTRESLDRLMSKIR----GSTTLVVS 279

Query: 226 RDKHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQ-LSKSVVKYAGGLPL 284
           R K           Y  E L  DEA+ L CL AF+   P   + + L K VV    GLPL
Sbjct: 280 RSK----LADPRTTYNVELLKKDEAMSLLCLCAFEQKSPPSPFNKYLVKQVVDECKGLPL 335

Query: 285 ALKVLGSFLFGRTIAEWESALQRLER------DPENEILDVLQISFDGLKETEKKIFLDI 338
           +LKVLG+ L  +    WE  ++RL R        E+ +   ++ S + L    +  FLD+
Sbjct: 336 SLKVLGASLKNKPERYWEGVVKRLLRGEAADETHESRVFAHMEESLENLDPKIRDCFLDM 395

Query: 339 ACFYKGKYI--DYVTKI 353
             F + K I  D +T +
Sbjct: 396 GAFPEDKKIPLDLLTSV 412

Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
255547494	1082	TMV resistance protein N, putative [Rici	0.983	0.339	0.533	1e-101
224126759	515	tir-nbs-lrr resistance protein [Populus	0.991	0.718	0.501	2e-99
356560337	1289	PREDICTED: TMV resistance protein N-like	0.986	0.285	0.513	2e-99
224060459	524	tir-nbs-lrr resistance protein [Populus	0.991	0.706	0.495	3e-99
359493496	1180	PREDICTED: TMV resistance protein N-like	0.970	0.306	0.501	7e-99
255547496	1097	ATP binding protein, putative [Ricinus c	0.989	0.336	0.522	1e-98
359493487	1162	PREDICTED: TMV resistance protein N-like	0.975	0.313	0.504	2e-96
147858727	1177	hypothetical protein VITISV_025072 [Viti	0.970	0.307	0.490	1e-95
105922680	1282	TIR-NBS-LRR-TIR type disease resistance	0.970	0.282	0.517	1e-95
147768286	1206	hypothetical protein VITISV_033530 [Viti	0.978	0.302	0.516	2e-95

>gi|255547494|ref|XP_002514804.1| TMV resistance protein N, putative [Ricinus communis] gi|223545855|gb|EEF47358.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/373 (53%), Positives = 263/373 (70%), Gaps = 6/373 (1%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
           + P+FY ++P  VRKQT  F E+F K+E+ F+ NI KVQ+WR +   +AN+SGW+ ++R+
Sbjct: 100 VLPVFYSVDPAEVRKQTGRFGESFAKYEKLFKNNIGKVQQWRAAATGMANLSGWDTQNRH 159

Query: 62  EPEFIVDIVKEISCKISAKSETL----KELVGLDSRL-EKLRFLINKGPTDVRMIGICGM 116
           E E I +IV+E+  K+   S       K  VG++SRL E +++L  +   DVR +GICGM
Sbjct: 160 ESELIEEIVEEVLKKLRKSSHRFSSASKNFVGMNSRLNEMMKYLGKRESDDVRFVGICGM 219

Query: 117 GGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNV 176
           GGIGKTT+AR VY  +S EFE SCFLANVRE+ +K+ L  LQ+QL+S+ L      VW++
Sbjct: 220 GGIGKTTIARAVYAELSSEFEGSCFLANVREVEEKNSLS-LQEQLLSETLMERKITVWDI 278

Query: 177 YDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV 236
           + G N I++RL HKKVL+++DDV  L+QL+SLAG  DWFG GSRI IT+RD+HLL+ HGV
Sbjct: 279 HAGRNEIKNRLSHKKVLIILDDVNHLEQLKSLAGMSDWFGNGSRIIITTRDEHLLLCHGV 338

Query: 237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR 296
           + +Y    LN+DEAL LF LKAFK+  P   Y +LS   V YA GLPLAL VLGS L+GR
Sbjct: 339 ERIYRVGGLNHDEALRLFSLKAFKNDYPADDYVELSNHFVNYANGLPLALDVLGSCLYGR 398

Query: 297 TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNY 356
           +I EW+SAL RL+  P   ILD L ISF+GL+E EKK+FLDIACF+KG+   YV K+L  
Sbjct: 399 SINEWQSALDRLKEIPNKRILDKLYISFEGLQEIEKKVFLDIACFFKGEDKHYVVKVLES 458

Query: 357 CDFDPIIGIGGLI 369
           C F   IGI  L+
Sbjct: 459 CGFYAEIGIRVLL 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126759|ref|XP_002329466.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870146|gb|EEF07277.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 186/371 (50%), Positives = 265/371 (71%), Gaps = 1/371 (0%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
           ++ P+FY+++P+ V +Q  SF E+   HE     N E++++WR++L + A +SGW L   
Sbjct: 88  VVLPVFYNVDPSDVEEQKGSFGESLDFHETYLGINAEQLKQWREALTKAAQLSGWHLDRG 147

Query: 61  NEPEFIVDIVKEISCKISAKS-ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGI 119
           NE  FI  IV+E+  +++  S       VGLD R+E+L  ++N G ++V M+GICG+GG 
Sbjct: 148 NEAVFIRKIVEEVWAQLNHTSLHVAAYQVGLDQRIEELIHMLNIGSSNVCMVGICGLGGS 207

Query: 120 GKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDG 179
           GKTT+A+ VY+LI+++FEA CFL+NVRE SK+ GLV LQ++L+ ++L      + +V  G
Sbjct: 208 GKTTVAKAVYNLINNQFEACCFLSNVREFSKRYGLVHLQEKLLFEILGDKTLVLGSVDRG 267

Query: 180 MNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239
           +N+I+ RLRHKKVL+VIDDV  L QL+ +AG+ DWFG+GS+I IT+RD+ LL+ HGV+ +
Sbjct: 268 INVIKDRLRHKKVLIVIDDVDHLDQLKQIAGERDWFGLGSKIIITTRDERLLVFHGVERL 327

Query: 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIA 299
              + L  D+AL LFC  AF++  P   Y ++S  VVKY+ GLPLAL VLGSFL+GR+I 
Sbjct: 328 LRVKELCCDDALMLFCWHAFRNSHPPIDYLEISDQVVKYSKGLPLALVVLGSFLYGRSIP 387

Query: 300 EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDF 359
           E ES L +L R P  +I +VL+ISFDGL+  E+ IFLDIACF+KG+  DYV KIL+ CDF
Sbjct: 388 ERESELDKLRRIPNKQIYEVLKISFDGLEHHERAIFLDIACFFKGQEKDYVIKILDACDF 447

Query: 360 DPIIGIGGLIE 370
           DP+IGI  L+E
Sbjct: 448 DPVIGIQVLME 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560337|ref|XP_003548449.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/370 (51%), Positives = 260/370 (70%), Gaps = 2/370 (0%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
           +FPIF+ ++P+ VR Q  SF +AF +HEE FRE+ +K+++WR +L+EVA+ SGW+ K+++
Sbjct: 106 VFPIFHGVDPSDVRHQRGSFAKAFSEHEEKFREDKKKLERWRHALREVASYSGWDSKEQH 165

Query: 62  EPEFIVDIVKEISCKISAKSETLKE-LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIG 120
           E   I  IV  I  KI  +     + LVG+DSR++++  L+     DVR IG+ GMGGIG
Sbjct: 166 EATLIETIVGHIQKKIIPRLPCCTDNLVGIDSRMKEVYSLMGISLNDVRFIGLWGMGGIG 225

Query: 121 KTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGM 180
           KTT+AR VY+ I  +F  SCFL N+RE+SK +GLV +QK+L+  L N+  S  +N++DG 
Sbjct: 226 KTTIARFVYEAIKGDFNVSCFLENIREVSKTNGLVHIQKELLFHL-NVRSSDFYNLHDGK 284

Query: 181 NMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVY 240
           N+I + L +KK+LLV+DDV EL QLE+LAGK +WFG GSR+ IT+RDKHLL  HGV    
Sbjct: 285 NIIANSLSNKKILLVLDDVSELSQLENLAGKQEWFGSGSRVIITTRDKHLLKTHGVHLTC 344

Query: 241 MHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAE 300
             + L  +EAL LFCLKAFK  +P + Y  L K VV+YA GLPLAL+VLGS L+GRT+  
Sbjct: 345 KAKGLAQNEALKLFCLKAFKQDQPKEEYLNLCKEVVEYARGLPLALEVLGSHLYGRTVEV 404

Query: 301 WESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFD 360
           W SAL+++   P ++I D L+IS+D L+   +K+FLDIACF+KG  ID V  IL  C + 
Sbjct: 405 WHSALEQIRSFPHSKIQDTLKISYDSLQPPYQKMFLDIACFFKGMDIDEVKNILKNCGYH 464

Query: 361 PIIGIGGLIE 370
           P IGI  LIE
Sbjct: 465 PEIGIDILIE 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060459|ref|XP_002300210.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222847468|gb|EEE85015.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 184/371 (49%), Positives = 270/371 (72%), Gaps = 1/371 (0%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
           ++FP+FY+++P+ V +Q  SF EA L HE  +  + E+VQKWR++L + A +SGW L + 
Sbjct: 88  VVFPVFYNVDPSDVEEQNGSFGEALLFHETYWGIDTERVQKWREALTKAAQLSGWHLNNG 147

Query: 61  NEPEFIVDIVKEISCKISAKSETLKEL-VGLDSRLEKLRFLINKGPTDVRMIGICGMGGI 119
           NE +FI  IV+++  +++  S  +    VGL++ +E++  ++N     V M+G+CG+GG+
Sbjct: 148 NEAKFIWRIVEKVLSQLNHTSLHIAAYQVGLNNHIEEINHMLNTRSDGVCMVGLCGIGGV 207

Query: 120 GKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDG 179
           GKTT+++ VY+LI+++FE SCFL+NVREISK+ GL+ LQ+ L+ ++L   +  + +V  G
Sbjct: 208 GKTTISKAVYNLIANQFEGSCFLSNVREISKQHGLLRLQETLLYEILGDKNLVLGSVDRG 267

Query: 180 MNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239
           +N+IR RLR+KKVL+VIDD   L QL+ LAG+ DWFG+GSR+ IT+RD+HLL+AHGV+ +
Sbjct: 268 INVIRDRLRNKKVLIVIDDADNLDQLKQLAGEPDWFGLGSRVIITTRDEHLLVAHGVERL 327

Query: 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIA 299
           Y  + L  D+AL LF   AF++  P + + ++S   V+YA GLPLAL VLG+FL+GR+I 
Sbjct: 328 YKVKELCPDDALMLFSWNAFRNPHPSEDHLEVSLRAVRYAQGLPLALVVLGAFLYGRSIR 387

Query: 300 EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDF 359
           EWES L RL+R P  +I +VL+ISFDGL+  EK IFLDIA F+KG+  DYV KIL+ CD 
Sbjct: 388 EWESELDRLKRIPNKQIYEVLKISFDGLEYHEKTIFLDIARFFKGQEKDYVIKILDACDV 447

Query: 360 DPIIGIGGLIE 370
           +P IGI  LIE
Sbjct: 448 NPDIGIQVLIE 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493496|ref|XP_003634615.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 185/369 (50%), Positives = 257/369 (69%), Gaps = 7/369 (1%)

Query: 3   FPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNE 62
            P+F++++P+ VRKQ  SF +AF KHE+ +++ +E+V KWRD+L E A I+GW+ ++R+E
Sbjct: 110 LPVFHNVDPSNVRKQEGSFAKAFAKHEQVYKDKMEQVVKWRDALTEAATIAGWDTRNRDE 169

Query: 63  PEFIVDIVKEI-SCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGK 121
            E I  IV  I +  I A S  +  LVG+DSR+E L   +  G  DVR +GI GM GIGK
Sbjct: 170 SEVIEQIVTRILNEPIDAFSSNMDALVGMDSRMEDLLSRLCIGSDDVRFVGIWGMAGIGK 229

Query: 122 TTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMN 181
           TT+A  +YD I  +F+  CFL NVRE S++ GL +LQ+ L+SQ+L     G+ N+  G+N
Sbjct: 230 TTIAEAIYDRIYTKFDGCCFLKNVREDSQRHGLTYLQETLLSQVLG----GINNLNRGIN 285

Query: 182 MIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYM 241
            I++RLR K+VL+V+DDV+  QQLE+LAG HDWFG GSRI IT+R+K LL+   VDE+Y 
Sbjct: 286 FIKARLRPKRVLIVLDDVVHRQQLEALAGNHDWFGSGSRIIITTREKRLLIEQEVDEIYK 345

Query: 242 HEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEW 301
            E L YDEAL LFC  AF+   P + + QL    V Y GGLPLALKVLGS L+ ++I EW
Sbjct: 346 VEKLEYDEALKLFCQYAFRYKHPTEDFMQLCHHAVDYTGGLPLALKVLGSCLYRKSIHEW 405

Query: 302 ESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDP 361
           +S L +L + P  E+L+VL+ SFDGL + EK +FLDIA FYKG+  D+V ++L+  +F P
Sbjct: 406 KSELDKLNQFPNKEVLNVLKTSFDGLDDNEKNMFLDIAFFYKGEDKDFVIEVLD--NFFP 463

Query: 362 IIGIGGLIE 370
           +  IG L++
Sbjct: 464 VSEIGNLVD 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547496|ref|XP_002514805.1| ATP binding protein, putative [Ricinus communis] gi|223545856|gb|EEF47359.1| ATP binding protein, putative [Ricinus communis]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/373 (52%), Positives = 266/373 (71%), Gaps = 4/373 (1%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
           ++ P+F ++ P  VRKQ A F +AF KHE  F+ +++KVQ+WR ++ E+AN++GW+  DR
Sbjct: 100 IVMPVFCNVNPYEVRKQAAGFGKAFAKHELRFKNDVQKVQRWRAAISELANLAGWDSLDR 159

Query: 61  NEPEFIVDIVKEISCKI---SAKSETLKELVGLDSRLEKLRFLINKGP-TDVRMIGICGM 116
           +E E I +IVKE+  K+   S +S   K  VG++SRL ++   ++ G   DV+ IGICGM
Sbjct: 160 HESELIQEIVKEVLSKLRKTSLESSAAKNFVGMNSRLVEMSMCLDMGQLDDVQFIGICGM 219

Query: 117 GGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNV 176
           GGIGKTT+AR V++ +S +FE S FLANVRE+ +K GLV LQKQL+S++L   +  + N 
Sbjct: 220 GGIGKTTIARFVHEELSSQFEGSSFLANVREVEEKRGLVHLQKQLLSEILLDRNITICNA 279

Query: 177 YDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV 236
           + GM  I +RL HK+VL+++DDV +L QL+ LAG HDWFG GSRI +TSRD+HLL  HGV
Sbjct: 280 FGGMTEISNRLAHKRVLIILDDVNQLDQLKMLAGMHDWFGKGSRIIVTSRDEHLLKCHGV 339

Query: 237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR 296
           D++Y  E L  DEAL LFCLKAF++  P + + +LS   V Y  GLPLAL V GSFLFG+
Sbjct: 340 DKIYRVEGLGRDEALHLFCLKAFRNDHPIEDFLELSNQFVNYCNGLPLALDVFGSFLFGK 399

Query: 297 TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNY 356
           +++EW SAL RL+  P  EILD L ISFDGL+E EKK+FLDIACF+ G+  DYV ++L+ 
Sbjct: 400 SLSEWRSALDRLKEIPNQEILDKLNISFDGLEEMEKKLFLDIACFFNGEDRDYVYEVLDS 459

Query: 357 CDFDPIIGIGGLI 369
           C   P  GI  L+
Sbjct: 460 CGLYPDFGISVLV 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/369 (50%), Positives = 258/369 (69%), Gaps = 5/369 (1%)

Query: 3   FPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNE 62
            P+FY+L P+ V+KQT SF EAF KHE+ +RE +EKV KWR++L EVA ISGW+ +DR+E
Sbjct: 111 LPVFYNLNPSHVKKQTGSFAEAFAKHEQEYREKMEKVVKWREALTEVATISGWDSRDRHE 170

Query: 63  PEFIVDIVKEISCKISAKSET-LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGK 121
            + I +IV++I  K+   S + +K LVG++SRLE +  L++    DVRM+GI GM GIGK
Sbjct: 171 SKLIEEIVRDIWNKLVGTSPSYMKGLVGMESRLEAMDSLLSMFSDDVRMVGIWGMAGIGK 230

Query: 122 TTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLL--NLPDSGVWNVYDG 179
           TT+A+V+Y+ I  +FE  CFL+NVRE S K GL +LQ +L+SQ+L    P++G++N   G
Sbjct: 231 TTIAKVIYERIYTQFEGCCFLSNVREESYKHGLPYLQMELLSQILKERKPNAGLFN--KG 288

Query: 180 MNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239
           +N ++  L  +KVL+++DDV + QQLE LAG ++WFG+GSRI IT+RD+HLL    VD +
Sbjct: 289 INFMKDVLHSRKVLIILDDVDQRQQLEDLAGYNNWFGLGSRIIITTRDRHLLTCQEVDAI 348

Query: 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIA 299
           Y  + L+ DEAL LFCL AF+     + + QL    + Y  GLPLALKVLGS L+ + I 
Sbjct: 349 YEVKELDNDEALKLFCLYAFRHRHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGIH 408

Query: 300 EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDF 359
           EWES L +L++ P  E+ +VL+ SF+GL + E+ IFLDIA FYKG   D+V  IL+ C F
Sbjct: 409 EWESELNKLKQFPNKEVQNVLKTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCGF 468

Query: 360 DPIIGIGGL 368
              IGI  L
Sbjct: 469 FFGIGIRNL 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858727|emb|CAN82909.1| hypothetical protein VITISV_025072 [Vitis vinifera]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/369 (49%), Positives = 253/369 (68%), Gaps = 7/369 (1%)

Query: 3   FPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNE 62
            P+FY+++P+ VRKQ   F +AF +HE+ +RE +EKV KWR +L EVA ISGW+ +DR+E
Sbjct: 111 LPVFYNVDPSHVRKQKGCFADAFAEHEQVYREKMEKVVKWRKALTEVATISGWDSRDRDE 170

Query: 63  PEFIVDIVKEI-SCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGK 121
            E I +IV  I +  I A S  +  LVG+DSR+E L  L+  G  DVR +GI GM GIGK
Sbjct: 171 SEVIEEIVTRILNEPIDAFSSNVDALVGMDSRMEDLLSLLCIGSNDVRFVGIWGMAGIGK 230

Query: 122 TTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMN 181
           TT+A  +YD I  +F+  CFL +VRE S++ GL +LQ+ L+S++L     G+ N+  G+N
Sbjct: 231 TTIAEAIYDRIYTKFDGCCFLKDVREDSQRHGLTYLQETLLSRVLG----GINNLNRGIN 286

Query: 182 MIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYM 241
            I++RL  KKVL+V+D+V+  Q+LE+L G HDWFG GSRI IT+R+K LL+   +D +Y 
Sbjct: 287 FIKARLHSKKVLIVLDNVVHRQELEALVGSHDWFGPGSRIIITTREKRLLIEQEMDAIYE 346

Query: 242 HEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEW 301
            E L YDEAL LFC  AF+   P + + QL    V Y G LPLALKVLGS L+ ++I EW
Sbjct: 347 VEKLEYDEALKLFCQYAFRYKHPTEDFMQLCHHAVDYTGSLPLALKVLGSCLYRKSIHEW 406

Query: 302 ESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDP 361
           +S L +  + P  E+L+VL+ SFDGL + EK +FLDIA FYKG+  D+V ++L+  +F P
Sbjct: 407 KSELDKFNQFPNKEVLNVLKTSFDGLDDNEKNMFLDIAFFYKGEDKDFVIEVLD--NFFP 464

Query: 362 IIGIGGLIE 370
           +  IG L++
Sbjct: 465 VSEIGNLVD 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922680|gb|ABF81430.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/371 (51%), Positives = 262/371 (70%), Gaps = 9/371 (2%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
           + P+FYD++P+       ++++AF++HE+ F+EN+EKV+ W+D L  V N+SGW++++RN
Sbjct: 153 VLPVFYDVDPS------ETYEKAFVEHEQNFKENLEKVRIWKDCLSTVTNLSGWDVRNRN 206

Query: 62  EPEFIVDIVKEISCKISAKSETL-KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIG 120
           E E I  IV+ IS K+S    T+ K LVG+DSRLE L   I +   +   IGICGMGG+G
Sbjct: 207 ESESIKIIVEYISYKLSITLPTISKNLVGIDSRLEVLNGYIGEEVGEAIFIGICGMGGLG 266

Query: 121 KTTLARVVYDLISHEFEASCFLANVREI-SKKSGLVFLQKQLISQLLNLPDSGVWNVYDG 179
           KTT+ARVVYD I  +FE SCFLANVRE+ ++K G   LQ+QL+S++L +  + V +   G
Sbjct: 267 KTTVARVVYDRIRWQFEGSCFLANVREVFAEKDGPRRLQEQLLSEIL-MERASVCDSSRG 325

Query: 180 MNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239
           + MI+ R + KK+L+V+DDV + +QLESLA +  WFG GSRI ITSRDK +L  +GV  +
Sbjct: 326 IEMIKRRSQRKKILVVLDDVDDHKQLESLAAESKWFGPGSRIIITSRDKQVLTRNGVARI 385

Query: 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIA 299
           Y  E LN D+AL LF  KAF++ +P + +  LSK VV YA GLPLAL+V+GSFL GR+I 
Sbjct: 386 YEAEKLNDDDALMLFSQKAFENDQPAEDFLDLSKQVVGYANGLPLALEVIGSFLHGRSIP 445

Query: 300 EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDF 359
           EW  A+ R+   P++EI+ VL +SFDGL E EKKIFLDIACF KG  ID +T+IL+   F
Sbjct: 446 EWRGAINRMNEIPDHEIIKVLLVSFDGLHELEKKIFLDIACFLKGFKIDRITRILDGRGF 505

Query: 360 DPIIGIGGLIE 370
              IGI  LIE
Sbjct: 506 HASIGIPVLIE 516

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768286|emb|CAN64759.1| hypothetical protein VITISV_033530 [Vitis vinifera]

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 192/372 (51%), Positives = 253/372 (68%), Gaps = 7/372 (1%)

Query: 4   PIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEP 63
           P+FY+++P+ VRKQT SF EAF KH+  + +  EKV KWR +L   + +SG++ +DR+E 
Sbjct: 113 PVFYNVDPSHVRKQTESFAEAFAKHDHIYGDKSEKVLKWRKALTVASGLSGYDSRDRHET 172

Query: 64  EFIVDIVKEISCK-ISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKT 122
           E I ++V  I  K I A S  ++ LVG+ SRL+ +  L++ G  DVRM+GI GM GIGK+
Sbjct: 173 EVIDEVVTMIFNKLIDASSSNMEGLVGMGSRLQDMAQLLDIGSVDVRMVGIWGMAGIGKS 232

Query: 123 TLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLISQLL--NLPDSGVWNVYDG 179
           T+A  VY+ I  +F E  CFL NVRE S++ GL +LQ++L+SQ+   NL      N   G
Sbjct: 233 TIAYQVYNKIYAQFDEGYCFLPNVREESQRHGLAYLQEELLSQISGGNLNKG---NFNRG 289

Query: 180 MNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV 239
           +N I+ RL  +KVL+V+DDV   +QLE LAG HDWFG GSRI IT++DK LL  HGVD +
Sbjct: 290 INFIKERLHSRKVLIVLDDVDMYEQLEVLAGNHDWFGAGSRIIITTKDKTLLNMHGVDAI 349

Query: 240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIA 299
           Y  E L Y+EAL LFC  AFK   P   Y QL K+ VKY  GLPLA+KVLGSF+  +TI 
Sbjct: 350 YNVEGLKYNEALKLFCWCAFKHDLPTADYMQLCKNFVKYIEGLPLAIKVLGSFVKNKTID 409

Query: 300 EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDF 359
           EW+SAL +L+R P  ++  VL+ISFDGL + +K IFLDIACF+KG+  D+V KIL  CDF
Sbjct: 410 EWKSALDKLKRIPHKDVQKVLRISFDGLDDNQKDIFLDIACFFKGQDKDFVAKILESCDF 469

Query: 360 DPIIGIGGLIEN 371
            P   I  L EN
Sbjct: 470 FPANDIRVLEEN 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.973	0.280	0.419	1.4e-71
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.970	0.316	0.405	3e-67
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.975	0.305	0.428	4e-66
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.981	0.337	0.355	1.8e-55
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.959	0.397	0.370	4e-55
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.978	0.325	0.349	3.1e-54
TAIR|locus:2129670	1008	AT4G14370 [Arabidopsis thalian	0.949	0.351	0.355	4.4e-54
TAIR|locus:2164486	1104	AT5G40910 [Arabidopsis thalian	0.930	0.314	0.351	7.8e-54
TAIR|locus:2195468	1017	AT1G63880 [Arabidopsis thalian	0.970	0.355	0.365	1.6e-53
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.949	0.255	0.362	2.3e-53

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 156/372 (41%), Positives = 234/372 (62%)

Query:     2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
             I PIFY+++P+ VR+Q  SF E    H +      EKV KW+++LK++A ISG + ++ +
Sbjct:   104 IVPIFYEVDPSDVRRQRGSFGEDVESHSDK-----EKVGKWKEALKKLAAISGEDSRNWD 158

Query:    62 EPEFIVDIVKEISCKISAKS-ETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXXXXXX 120
             + + I  IVK+IS K+ + S +  K L+G+ S ++ L+ +I+    DVR           
Sbjct:   159 DSKLIKKIVKDISDKLVSTSWDDSKGLIGMSSHMDFLQSMISIVDKDVRMLGIWGMGGVG 218

Query:   121 KTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGM 180
             KTT+A+ +Y+ +S +F+  CF+ NV+E+  + G+  LQ + + ++    D   W+     
Sbjct:   219 KTTIAKYLYNQLSGQFQVHCFMENVKEVCNRYGVRRLQVEFLCRMFQERDKEAWSSVSCC 278

Query:   181 NMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVY 240
             N+I+ R RHK V +V+DDV   +QL  L  +  WFG GSRI +T+RD+HLL++HG++ VY
Sbjct:   279 NIIKERFRHKMVFIVLDDVDRSEQLNELVKETGWFGPGSRIIVTTRDRHLLLSHGINLVY 338

Query:   241 MHEHLNYDEALGLFCLKAFKSH--KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTI 298
               + L   EAL LFC  AF+     P  G+E+LS   V YA GLPLAL+VLGSFL+ R+ 
Sbjct:   339 KVKCLPKKEALQLFCNYAFREEIILP-HGFEELSVQAVNYASGLPLALRVLGSFLYRRSQ 397

Query:   299 AEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCD 358
              EWES L RL+  P ++I++VL++S+DGL E EK IFL I+CFY  K +DYV K+L+ C 
Sbjct:   398 IEWESTLARLKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRKLLDLCG 457

Query:   359 FDPIIGIGGLIE 370
             +   IGI  L E
Sbjct:   458 YAAEIGITILTE 469

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 680 (244.4 bits), Expect = 3.0e-67, Sum P(2) = 3.0e-67
 Identities = 154/380 (40%), Positives = 232/380 (61%)

Query:     2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISG-WELKDR 60
             + PIFYD++P+ VR Q  SF +AF +HE  +++++E +Q+WR +L E AN+ G  + +D+
Sbjct:   101 VIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDK 160

Query:    61 NEPEFIVDIVKEIS---CKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXXX 117
              + + I  IV +IS   CKIS     L+ +VG+D+ LEK+  L+  G   VR        
Sbjct:   161 TDADCIRQIVDQISSKLCKISLSY--LQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMG 218

Query:   118 XXXKTTLARVVYDLI------SHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS 171
                KTT+AR ++D +      S++F+ +CFL +++E   K G+  LQ  L+S+LL    +
Sbjct:   219 GVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKE--NKRGMHSLQNALLSELLR-EKA 275

Query:   172 GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQ-LESLAGKHDWFGIGSRIFITSRDKHL 230
                N  DG + + SRLR KKVL+V+DD+      LE LAG  DWFG GSRI IT+RDKHL
Sbjct:   276 NYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHL 335

Query:   231 LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290
             +  +  D +Y    L   E++ LF   AF    P + +E+LS  VV YA GLPLALKV G
Sbjct:   336 IEKN--DIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWG 393

Query:   291 SFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYV 350
             S L    + EW+SA++ ++ +  + I+D L+IS+DGL+  ++++FLDIACF +G+  DY+
Sbjct:   394 SLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYI 453

Query:   351 TKILNYCDFDPIIGIGGLIE 370
              +IL  C      G+  LI+
Sbjct:   454 LQILESCHIGAEYGLRILID 473

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 4.0e-66, P = 4.0e-66
 Identities = 160/373 (42%), Positives = 227/373 (60%)

Query:     1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
             M+FPIF  ++P+ +R Q  S+ ++F KH+ +   N  K++ WR++L +VANISGW++K+R
Sbjct:   106 MVFPIFLYVDPSDIRWQQGSYAKSFSKHKNSHPLN--KLKDWREALTKVANISGWDIKNR 163

Query:    61 NEPEFIVDIVKEISCKISAKSETLKEL-VGLDSRLEKLRFLINKGPTDVRXXXXXXXXXX 119
             NE E I DI +EI  ++  +   +    VGL SRL+ +  L++ G   VR          
Sbjct:   164 NEAECIADITREILKRLPCQYLHVPSYAVGLRSRLQHISSLLSIGSDGVRVIVIYGMGGI 223

Query:   120 XKTTLARVVYDLISHEFEASCFLANVREISKK-SGLVFLQKQLISQLLNLPDSGVWNVYD 178
              KTTLA+V ++  SH FE S FL N RE SKK  G   LQ QL+S +L   D      + 
Sbjct:   224 GKTTLAKVAFNEFSHLFEGSSFLENFREYSKKPEGRTHLQHQLLSDILRRNDIE----FK 279

Query:   179 GMN-MIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD 237
             G++  ++ R R K+VLLV+DDV ++ QL S A   D FG GSRI IT+R+ HLL     +
Sbjct:   280 GLDHAVKERFRSKRVLLVVDDVDDVHQLNSAAIDRDCFGHGSRIIITTRNMHLLKQLRAE 339

Query:   238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRT 297
               Y  + L+ DE+L LF   AF++ +P K + Q S+ VV Y  GLPLA++VLG+FL  R+
Sbjct:   340 GSYSPKELDGDESLELFSWHAFRTSEPPKEFLQHSEEVVTYCAGLPLAVEVLGAFLIERS 399

Query:   298 IAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYC 357
             I EWES L+ L+R P + I   LQISF+ L   +K +FLDIACF+ G    YV  IL+ C
Sbjct:   400 IREWESTLKLLKRIPNDNIQAKLQISFNALTIEQKDVFLDIACFFIGVDSYYVACILDGC 459

Query:   358 DFDPIIGIGGLIE 370
             +  P I +  L+E
Sbjct:   460 NLYPDIVLSLLME 472

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 136/383 (35%), Positives = 218/383 (56%)

Query:     1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISG-WELKD 59
             ++  IFYD++P++VRKQ   F   F+K  E   E ++  Q+W  +L  VANI G   L  
Sbjct:   100 IVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVK--QRWTKALTHVANIKGEHSLNW 157

Query:    60 RNEPEFIVDIVKEISCKISAK-SETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXXXX 118
              NE + I  I  ++S K+S   S   + +VGL++ L KL  L+     DV+         
Sbjct:   158 ANEADMIQKIATDVSTKLSVTPSRDFEGMVGLEAHLTKLNSLLCFEGDDVKMIGIWGPAG 217

Query:   119 XXKTTLARVVYDLISHEFEASCFLANVREISKKS--GL---VF---LQKQLISQLLNLPD 170
               K+T+AR +Y+ +S  F+  CF+ N++  S KS  G+    F   LQK L++++LN  D
Sbjct:   218 IGKSTIARALYNQLSSSFQLKCFMGNLKG-SLKSIVGVDHYEFQKSLQKLLLAKILNQGD 276

Query:   171 SGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230
               V N    +  I+  L+ ++VL+++DDV +L+QLE LA +  WFG GSRI + + DK +
Sbjct:   277 MRVHN----LAAIKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSRIIVATEDKKI 332

Query:   231 LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290
             L  HG++++Y  +  + +EAL + CL AFK      G+E+L+K VV   G LPL L ++G
Sbjct:   333 LKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLGLSIVG 392

Query:   291 SFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYV 350
             S L G +  EWE  L R+E   + +I  +L++ ++ L +  + +FL IACF+  + +DYV
Sbjct:   393 SSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVDYV 452

Query:   351 TKILNYCDFDPIIGIGGLIENLY 373
             T +L   + D   G+  L +  +
Sbjct:   453 TVMLADSNLDVRNGLKTLADKCF 475

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 4.0e-55, P = 4.0e-55
 Identities = 139/375 (37%), Positives = 221/375 (58%)

Query:     1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAF-RENIEKV-QKWRDSLKEVANISGWELK 58
             MI P+FY+++P+ VRK+T  F +AF   EEA  R+  E+V QKWR++L  +ANI+G   +
Sbjct:    99 MIMPVFYEVDPSDVRKRTGEFGKAF---EEACERQPDEEVKQKWREALVYIANIAGESSQ 155

Query:    59 D-RNEPEFIVDIVKEISCKI-SAKSETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXX 116
             +  NE + I  I   IS ++ S  S     LVG+D+ + +L  L+    T+V+       
Sbjct:   156 NWDNEADLIDKIAMSISYELNSTLSRDSYNLVGIDNHMRELDSLLCLESTEVKMVGIWGP 215

Query:   117 XXXXKTTLARVVYDLISHEFEASCFLANVREISKKSGL------VFLQKQLISQLLNLPD 170
                 KTT+AR +++ +S  F+ + F+ NV+  S+ S L      + LQ+Q +S+++   D
Sbjct:   216 AGIGKTTIARALFNRLSENFQHTIFMENVKGSSRTSELDAYGFQLRLQEQFLSEVI---D 272

Query:   171 SGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL 230
                  ++D + +++ RL+  KVL+V+DDV +L+QL++L  +  WFG GSRI +T+ +K L
Sbjct:   273 HKHMKIHD-LGLVKERLQDLKVLVVLDDVDKLEQLDALVKQSQWFGSGSRIIVTTENKQL 331

Query:   231 LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG 290
             L AHG+  +Y     +  ++L +FC  AF       G  +L+  + K AG LPLALKVLG
Sbjct:   332 LRAHGITCIYELGFPSRSDSLQIFCQYAFGESSAPDGCIELATEITKLAGYLPLALKVLG 391

Query:   291 SFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYV 350
             S L G +  E +SAL RL      +I +VL++ +DG+ + +K IFL IAC + G+ +DYV
Sbjct:   392 SSLRGMSKDEQKSALPRLRTSLNEDIRNVLRVGYDGIHDKDKVIFLHIACLFNGENVDYV 451

Query:   351 TKILNYCDFDPIIGI 365
              +IL     D   G+
Sbjct:   452 KQILASSGLDVTFGL 466

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 3.1e-54, P = 3.1e-54
 Identities = 132/378 (34%), Positives = 214/378 (56%)

Query:     2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
             + P+FY L+P+ +RKQ+  F EAF K  +   E ++   +W+ +L +V+NI G+  K+ N
Sbjct:   101 VIPVFYYLDPSHLRKQSGEFGEAFKKTCQNQTEEVKN--QWKQALTDVSNILGYHSKNCN 158

Query:    62 -EPEFIVDIVKEISCKIS-AKSETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXXXXX 119
              E   I +I   I  K+S   S   +E VG+   +EK+R L++    +VR          
Sbjct:   159 SEATMIEEISSHILGKLSLTPSNDFEEFVGIKDHIEKVRLLLHLESDEVRMVGIWGTSGI 218

Query:   120 XKTTLARVVYDLISHEFEASCFLANVREISKK-SGLVFLQKQLISQLLNLPDSGVWNVYD 178
              KTT+AR ++  +S +F++S ++     ISK   G         +  L L ++ ++ +  
Sbjct:   219 GKTTIARALFSNLSSQFQSSVYIDRAF-ISKSMEGYGRANPDDYNMKLRLRENFLFEILG 277

Query:   179 GMNM----IRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH 234
               NM    +  RL+H+KVL++IDD+ +   L++L G+  WFG GSRI + +++KH L AH
Sbjct:   278 KKNMKIGAMEERLKHQKVLIIIDDLDDQDVLDALVGRTQWFGSGSRIIVVTKNKHFLRAH 337

Query:   235 GVDEVYMHEHLNYDE-ALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL 293
             G+D VY    L  +E AL +FC  AF+ + P  G+ +LS  V   AG LPL LKVLGS+L
Sbjct:   338 GIDHVY-EACLPSEELALEMFCRYAFRKNSPPDGFMELSSEVALRAGNLPLGLKVLGSYL 396

Query:   294 FGRTIAEWESALQRLERDPENEILDVLQISFDGLK-ETEKKIFLDIACFYKGKYIDYVTK 352
              GR I +W   + RL+ D + +I   L++S+DGL  + ++ IF  IAC + G+ ++ +  
Sbjct:   397 RGRDIEDWMDMMPRLQNDLDGKIEKTLRVSYDGLNNKKDEAIFRHIACLFNGEKVNDIKL 456

Query:   353 ILNYCDFDPIIGIGGLIE 370
             +L   D D  IG+  L++
Sbjct:   457 LLAESDLDVNIGLKNLVD 474

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129670 AT4G14370 [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 4.4e-54, P = 4.4e-54
 Identities = 131/368 (35%), Positives = 215/368 (58%)

Query:     1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD- 59
             ++  +FY ++P+ VRKQT  F  +F  +E   R   EK +KW  +L  V NI+G   ++ 
Sbjct:    58 IVMTVFYGVDPSDVRKQTGEFGRSF--NETCSRSTKEKRRKWSQALNHVGNIAGEHFQNW 115

Query:    60 RNEPEFIVDIVKEISCKISAK-SETLKELVGLDSRLEKLRFLINKGPTD-VRXXXXXXXX 117
              NE + I  I ++IS K+++  S    ++VGL++ LE++++L++    D           
Sbjct:   116 DNESKMIEKISRDISNKLNSTISRDFDDMVGLEAHLEEMKYLLDLDYKDGAMIVGICGPA 175

Query:   118 XXXKTTLARVVYDLISHEFEASCFLANV-----REISKKSGLVFLQKQLISQLLNLPDSG 172
                KTT+AR +Y L+   F+ SCF+ N+     R + +    + LQ+QL+S++LN   +G
Sbjct:   176 GIGKTTIARALYSLLLSSFQLSCFVENLSGSDNRGLDEYGFKLRLQEQLLSKILN--QNG 233

Query:   173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM 232
             +  +Y  +  I+ RL  +KVL+V+DDV +L+QLE+LA +  WFG GSRI +T+ DK LL 
Sbjct:   234 M-RIYH-LGAIQERLCDQKVLIVLDDVNDLKQLEALANETSWFGPGSRIIVTTEDKGLLE 291

Query:   233 AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF 292
              HG+++ Y     + +EAL +FC+ AF+   P  G+++L+K V      LPL L+V+GS 
Sbjct:   292 QHGINKTYHVGFPSIEEALEIFCIYAFRKSSPPDGFKKLTKRVTNVFDNLPLGLRVMGSS 351

Query:   293 LFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTK 352
             L G+   EWE+ L RLE   +  I   L++ +D L+E E+ +FL IA F+     ++V  
Sbjct:   352 LRGKGEDEWEALLDRLETSLDRNIEGALRVGYDSLQEEEQALFLHIAVFFNYNKDEHVIA 411

Query:   353 ILNYCDFD 360
             +L   + D
Sbjct:   412 MLADSNLD 419

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2164486 AT5G40910 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-54, P = 7.8e-54
 Identities = 125/356 (35%), Positives = 208/356 (58%)

Query:     1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISG-WELKD 59
             ++  IFY ++P+ VRKQ   F   F K  E  +  I K Q+W  +L+ +A ++G   L  
Sbjct:    99 VVMTIFYKVDPSDVRKQRGDFGSTFKKTCEG-KTWIVK-QRWIKALEYIATVAGEHSLSW 156

Query:    60 RNEPEFIVDIVKEISCKIS-AKSETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXXXX 118
              NE E I  I  ++S K++   S   + +VGL++ L KL   +     DV+         
Sbjct:   157 ANEAELIQKIATDVSNKLNLTPSRDFEGMVGLEAHLTKLDSFLCLESDDVKMIGIWGPAG 216

Query:   119 XXKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYD 178
               KTT+AR +++ +S  F  SCF+  + +++     + LQ +L+S++LN  D  + +   
Sbjct:   217 IGKTTIARALFNQLSTGFRLSCFMGTI-DVNDYDSKLCLQNKLLSKILNQKDMKIHH--- 272

Query:   179 GMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDE 238
              +  I   L +++VL+V+DDV +L+QLE LA +  WFG GSRI ++  D+ +L AHG+++
Sbjct:   273 -LGAIEEWLHNQRVLIVLDDVDDLEQLEVLAKESSWFGHGSRIIVSLNDRKILKAHGIND 331

Query:   239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTI 298
             +Y  +  + +EAL + CL AFK + P  G+E+++K VV+  G LPL L+V+GS  +G + 
Sbjct:   332 IYDVDFPSEEEALEILCLSAFKQNSPQDGFEEVAKRVVELCGKLPLGLRVVGSSFYGESE 391

Query:   299 AEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKIL 354
              EW   L  +E + + +I +VL++ +D L E  + +FL IACF+  K +DYVT +L
Sbjct:   392 DEWRIQLYGIETNLDRKIENVLRVGYDKLSERHQSLFLHIACFFNHKSVDYVTTML 447

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2195468 AT1G63880 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 1.6e-53, P = 1.6e-53
 Identities = 139/380 (36%), Positives = 218/380 (57%)

Query:     1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWE-LKD 59
             ++  IFY ++P+ VRKQ   F  AF  +E   R+  E+ QKW  +L +V+NI+G + L+ 
Sbjct:   101 IVMTIFYGVDPSDVRKQIGKFGIAF--NETCARKTEEERQKWSKALNQVSNIAGEDFLRW 158

Query:    60 RNEPEFIVDIVKEISCKISAK-SETLKELVGLDSRLEKLRFLINKGPTDVRXXXXXXXXX 118
              NE   I  I +++  K++A  S     +VG+++ L +++ L++    +V+         
Sbjct:   159 DNEAIMIEKIARDVLDKLNATPSRDFDGMVGIEAHLREIKSLLDLDNVEVKIVAIAGPAG 218

Query:   119 XXKTTLARVVYDLISHEFEASCFLANVREISKKSGL------VFLQKQLISQLLNLPDSG 172
               KTT+AR +Y L+S  F+ SCF+ N+R  S  SG       + LQ+Q +S++LN   SG
Sbjct:   219 IGKTTIARALYGLLSKRFQLSCFVDNLRG-SYHSGFDEYGFKLHLQEQFLSKVLN--QSG 275

Query:   173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM 232
             +   + G   I+  L  ++VL+++DDV +L+QLE+LA +  WFG GSRI +T+ +K LL 
Sbjct:   276 MRICHLGA--IKENLSDQRVLIILDDVNKLKQLEALANETTWFGPGSRIVVTTENKELLQ 333

Query:   233 AHGVDEVYMHEHLNYDE-ALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291
              HG++  Y H     DE AL + C  AFK   P  G+E+LS+SV K  G LPL L V+GS
Sbjct:   334 QHGINNTY-HVGFPSDEDALKILCSYAFKQTSPRHGFEELSESVTKLCGKLPLGLCVVGS 392

Query:   292 FLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVT 351
              L G+   EWE  + RLE   + +I DVL++ ++ L E  + +FL IA F+  +  D V 
Sbjct:   393 SLRGKKEDEWEDVVTRLETILDQDIEDVLRVGYESLDENAQTLFLHIAIFFNKEDGDLVK 452

Query:   352 KILNYCDFDPIIGIGGLIEN 371
              +    D D   G+  ++EN
Sbjct:   453 TMFAESDLDVKYGLK-ILEN 471

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 2.3e-53, P = 2.3e-53
 Identities = 132/364 (36%), Positives = 214/364 (58%)

Query:     2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWEL-KDR 60
             I PIFY ++P+ VRKQ+   K+ F +H+  F E  EKVQ+WR++L  V N++G+   KD 
Sbjct:   102 ILPIFYHVDPSHVRKQSDHIKKDFEEHQVRFSEEKEKVQEWREALTLVGNLAGYVCDKDS 161

Query:    61 NEPEFIVDIVKEISCKISAKSETLKE-LVGLDSRLEKLRFLIN-KGPTDVRXXXXXXXXX 118
              + + I  +VK +  ++S   E + E +VGL+S L+ L  LI+ +  + V+         
Sbjct:   162 KDDDMIELVVKRVLAELSNTPEKVGEFIVGLESPLKDLTGLIDTESSSGVQVLGLYGMGG 221

Query:   119 XXKTTLARVVYDLISHEFEASCFLANVREISK-KSGLVFLQKQLISQLLNL-PDSGVWNV 176
               KTTLA+  Y+ I   FE   F++++RE S  ++GLV LQK LI +L  L P+  + +V
Sbjct:   222 IGKTTLAKAFYNKIVGNFEQRAFISDIRERSSAENGLVTLQKTLIKELFRLVPE--IEDV 279

Query:   177 YDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV 236
               G+  I++ +  KK+++V+DDV  + Q+ +L G+  W+G G+ I IT+RD  +L    V
Sbjct:   280 SIGLEKIKANVHEKKIIVVLDDVDHIDQVHALVGETRWYGQGTLIVITTRDSEILSKLSV 339

Query:   237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR 296
             ++ Y  + L   +AL LF   + +  +P K    LSK +V+ +G LPLA++V GS L+ +
Sbjct:   340 NQQYEVKCLTEPQALKLFSYHSLRKEEPTKNLLALSKKIVQISGLLPLAVEVFGSLLYDK 399

Query:   297 TIA-EWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYI--DYVTKI 353
                 +W++ L +L++     + DVL++SF  L + EKK+FLDIAC +    I  D V  +
Sbjct:   400 KEEKDWQTQLDKLKKTQPGNLQDVLELSFKSLDDEEKKVFLDIACLFLKMEIKKDEVVIV 459

Query:   354 LNYC 357
             L  C
Sbjct:   460 LKGC 463

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	373
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-73
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-39
pfam01582	135	pfam01582, TIR, TIR domain	3e-06
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	4e-05
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	6e-04
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  247 bits (631), Expect = 2e-73
 Identities = 133/384 (34%), Positives = 221/384 (57%), Gaps = 20/384 (5%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD- 59
           ++ P+FY L+P+ VRKQT  F EAF K      +  ++  +W+ +L +VANI G+  ++ 
Sbjct: 100 LVIPVFYGLDPSHVRKQTGDFGEAFEK--TCQNKTEDEKIQWKQALTDVANILGYHSQNW 157

Query: 60  RNEPEFIVDIVKEISCKIS-AKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGG 118
            NE + I +I  ++  K++   S   ++ VG++  + K+  L++    +VRM+GI G  G
Sbjct: 158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSG 217

Query: 119 IGKTTLARVVYDLISHEFEASCFLANV-----REISKKSGLV------FLQKQLISQLLN 167
           IGKTT+AR ++  +S +F++S F+         EI   +          LQ+  +S++L+
Sbjct: 218 IGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILD 277

Query: 168 LPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRD 227
             D  ++++      +  RL+H+KVL+ IDD+ +   L++LAG+  WFG GSRI + ++D
Sbjct: 278 KKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333

Query: 228 KHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK 287
           KH L AHG+D +Y     + + AL +FC  AFK + P  G+ +L+  V   AG LPL L 
Sbjct: 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393

Query: 288 VLGSFLFGRTIAEWESALQRLERDPENEILDVLQISFDGLK-ETEKKIFLDIACFYKGKY 346
           VLGS+L GR   +W   L RL    + +I   L++S+DGL  + +K IF  IAC + G+ 
Sbjct: 394 VLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEK 453

Query: 347 IDYVTKILNYCDFDPIIGIGGLIE 370
           ++ +  +L   D D  IG+  L++
Sbjct: 454 VNDIKLLLANSDLDVNIGLKNLVD 477

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  141 bits (358), Expect = 1e-39
 Identities = 84/254 (33%), Positives = 131/254 (51%), Gaps = 19/254 (7%)

Query: 107 DVRMIGICGMGGIGKTTLARVVY--DLISHEFEASCFLANVREISKKSGLVFLQKQLISQ 164
           ++ ++GI GMGG+GKTTLA+ +Y  D +   F++  ++     +SK      LQK ++ +
Sbjct: 18  NLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVV----VSKTYTEFRLQKDILQE 73

Query: 165 LLNLPDSGVW---NVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRI 221
           L    D   W   N  +    I+  L  K+ LLV+DDV E    + +         GSR+
Sbjct: 74  LG--LDDSDWVEKNESELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRV 131

Query: 222 FITSRDKHL-LMAHGVDEVYMHEHLNYDEALGLFCLKAF-KSHKPWKGYEQLSKSVVKYA 279
            +T+R + +     G  + +  E L  +E+  LF  K F K   P    E+++K +V+  
Sbjct: 132 IVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKC 191

Query: 280 GGLPLALKVLGSFLFGR-TIAEWESALQRL-----ERDPENEILDVLQISFDGLKETEKK 333
            GLPLALKVLG  L  + T+ EWE  L++L      RD  NE+L +L +S+D L    K+
Sbjct: 192 KGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKR 251

Query: 334 IFLDIACFYKGKYI 347
            FL +A F +   I
Sbjct: 252 CFLYLALFPEDYNI 265

Length = 285

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLK 47
           I PIFY ++P+ VR Q+  F +AFLK  +   +  +K++ W+ +L 
Sbjct: 90  ILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANI 52
           + PIFY++ P+ VRKQ   F++ F K+   + E+ EK Q W+ +L  V + 
Sbjct: 91  VIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPED-EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 19/143 (13%)

Query: 86  ELVGLDSRLEKL-RFLINKGPTDVRMIGICGMGGIGKTTLAR-----------VVYDLIS 133
            LVG +  LE+L   L          + + G  G GKT+L R                  
Sbjct: 1   RLVGREEELERLLDALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAER 60

Query: 134 HEFEASCFLAN--VREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKK 191
           +   A        +R++ ++     L  +         +           + R   R + 
Sbjct: 61  NPPYAFSQALRELLRQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERLLARARP 120

Query: 192 VLLVIDDVIE-----LQQLESLA 209
           ++LV+DD+       L  L +L 
Sbjct: 121 LVLVLDDLQWADEESLDLLAALL 143

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 95  EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE 137
           E LRFL         +IGI G   +GK+T AR++  L+S   E
Sbjct: 69  ELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPE 111

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PRK04841	903	transcriptional regulator MalT; Provisional	99.62
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.61
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.58
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.51
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.5
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.49
COG0488	530	Uup ATPase components of ABC transporters with dup	99.49
COG3899	849	Predicted ATPase [General function prediction only	99.48
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.41
PF05729	166	NACHT: NACHT domain	99.35
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.34
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.24
PRK13342	413	recombination factor protein RarA; Reviewed	99.22
PRK06893	229	DNA replication initiation factor; Validated	99.17
COG3903	414	Predicted ATPase [General function prediction only	99.15
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.1
PRK12402	337	replication factor C small subunit 2; Reviewed	99.09
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.07
PTZ00202	550	tuzin; Provisional	99.06
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.04
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.02
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.02
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.01
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.01
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.99
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.99
PLN03194	187	putative disease resistance protein; Provisional	98.99
PLN03025	319	replication factor C subunit; Provisional	98.99
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.98
PRK04195	482	replication factor C large subunit; Provisional	98.97
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.95
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.94
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.94
PRK08727	233	hypothetical protein; Validated	98.94
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.93
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.9
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.9
PF13173	128	AAA_14: AAA domain	98.89
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.89
PF14516	331	AAA_35: AAA-like domain	98.89
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.89
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.88
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.87
PRK05642	234	DNA replication initiation factor; Validated	98.87
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.86
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.85
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.85
PRK08084	235	DNA replication initiation factor; Provisional	98.85
PRK13341	725	recombination factor protein RarA/unknown domain f	98.85
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.85
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.85
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.84
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.84
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.81
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.81
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.81
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.81
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.8
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.79
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.78
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.78
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.74
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.74
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.74
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.73
KOG2028	554	consensus ATPase related to the helicase subunit o	98.73
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.73
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.72
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.72
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.72
PRK09087	226	hypothetical protein; Validated	98.71
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.71
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.7
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.69
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.68
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.66
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.66
CHL00095	821	clpC Clp protease ATP binding subunit	98.64
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.64
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.61
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.61
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.6
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.6
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.6
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.59
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.59
PRK11147	635	ABC transporter ATPase component; Reviewed	98.55
PRK06620	214	hypothetical protein; Validated	98.55
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.54
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.54
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.51
PRK10865	857	protein disaggregation chaperone; Provisional	98.51
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.51
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.5
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.5
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.5
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.48
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.48
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.46
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.46
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.45
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.45
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	98.45
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.44
PF00004	132	AAA: ATPase family associated with various cellula	98.43
COG0488	530	Uup ATPase components of ABC transporters with dup	98.43
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.43
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.43
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.43
PHA02544	316	44 clamp loader, small subunit; Provisional	98.42
PRK12422	445	chromosomal replication initiation protein; Provis	98.42
CHL00176	638	ftsH cell division protein; Validated	98.41
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.4
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.38
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.37
PRK12377	248	putative replication protein; Provisional	98.34
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	98.32
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.32
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.32
PRK07952	244	DNA replication protein DnaC; Validated	98.31
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.29
CHL00181	287	cbbX CbbX; Provisional	98.27
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.26
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.25
PLN03073	718	ABC transporter F family; Provisional	98.23
cd01128	249	rho_factor Transcription termination factor rho is	98.23
PRK08769	319	DNA polymerase III subunit delta'; Validated	98.23
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.22
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.2
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.18
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.17
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.15
CHL00195	489	ycf46 Ycf46; Provisional	98.15
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.15
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.13
PRK09376	416	rho transcription termination factor Rho; Provisio	98.13
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.12
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.12
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	98.11
smart00382	148	AAA ATPases associated with a variety of cellular	98.1
PRK08116	268	hypothetical protein; Validated	98.1
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.09
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.09
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.09
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.08
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.08
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.07
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.06
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.06
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.05
PRK08181	269	transposase; Validated	98.05
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.04
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.04
cd03246	173	ABCC_Protease_Secretion This family represents the	98.02
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.02
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.02
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.01
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.01
TIGR00767	415	rho transcription termination factor Rho. Members	98.0
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.0
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	98.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.99
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.98
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.98
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.97
PRK06921	266	hypothetical protein; Provisional	97.97
PRK06964	342	DNA polymerase III subunit delta'; Validated	97.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.96
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.96
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	97.95
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.93
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.93
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.93
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.93
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.92
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.92
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.92
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.92
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.92
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.92
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.91
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.91
PRK10536	262	hypothetical protein; Provisional	97.91
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.91
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.9
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.9
PRK10865	857	protein disaggregation chaperone; Provisional	97.9
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.88
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.87
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.87
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.87
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.87
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.87
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.86
KOG0062	582	consensus ATPase component of ABC transporters wit	97.86
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.85
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.85
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.85
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.85
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.84
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.84
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.84
PRK06526	254	transposase; Provisional	97.84
PRK13409	590	putative ATPase RIL; Provisional	97.83
PRK06835	329	DNA replication protein DnaC; Validated	97.83
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.83
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.83
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	97.83
PRK13537	306	nodulation ABC transporter NodI; Provisional	97.83
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.83
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.83
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.83
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.82
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	97.82
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.82
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.82
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.81
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.81
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.81
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.81
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.8
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.8
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.8
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.8
PRK09183	259	transposase/IS protein; Provisional	97.8
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.8
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.8
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.79
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.79
PRK10908	222	cell division protein FtsE; Provisional	97.79
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.79
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	97.79
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.78
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.77
PRK11147	635	ABC transporter ATPase component; Reviewed	97.77
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.77
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.77
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.77
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.76
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.76
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.76
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.74
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.74
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.74
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.74
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.74
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.74
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.74
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	97.74
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.74
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.73
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.73
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.73
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.73
PRK13536	340	nodulation factor exporter subunit NodI; Provision	97.72
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	97.72
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.72
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.72
PRK11608	326	pspF phage shock protein operon transcriptional ac	97.71
KOG0062	582	consensus ATPase component of ABC transporters wit	97.71
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	97.71
KOG1514	767	consensus Origin recognition complex, subunit 1, a	97.71
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.7
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.7
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.7
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	97.7
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.7
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.69
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	97.69
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.69
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.69
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.68
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.68
PRK06067	234	flagellar accessory protein FlaH; Validated	97.68
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.67
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	97.67
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.67
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	97.66
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	97.66
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.66
PRK12608	380	transcription termination factor Rho; Provisional	97.66
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.66
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.66
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.65
PRK08939	306	primosomal protein DnaI; Reviewed	97.65
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.65
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.65
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.65
PTZ00494	664	tuzin-like protein; Provisional	97.65
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.65
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.65
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.65
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	97.64
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.64
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.64
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.64
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.64
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.63
PRK10938	490	putative molybdenum transport ATP-binding protein	97.63
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.63
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.63
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.63
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.63
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.63
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	97.63
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.63
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.62
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.62
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.62
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.61
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.61
PHA00729	226	NTP-binding motif containing protein	97.61
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.61
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.61
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.6
PRK08118	167	topology modulation protein; Reviewed	97.6
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.6
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.59
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.59
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.59
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.59
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.59
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.58
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.58
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.58
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.58
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.58
PRK05022	509	anaerobic nitric oxide reductase transcription reg	97.58
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.58
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.57
PRK06696	223	uridine kinase; Validated	97.57
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.57
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.57
COG4152	300	ABC-type uncharacterized transport system, ATPase	97.56
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	97.56
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.56
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.56
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.56
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.55
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.55
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.55
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.55
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.55
PRK04132	846	replication factor C small subunit; Provisional	97.55
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.55
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.54
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.54
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.54
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.54
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.54
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.53
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.53
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.53
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.53
PRK04296	190	thymidine kinase; Provisional	97.52
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.52
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.52
CHL00095	821	clpC Clp protease ATP binding subunit	97.52
PRK13409	590	putative ATPase RIL; Provisional	97.51
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	97.51
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.51
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.51
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.51
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.51
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.51
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.51
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.51
KOG0927	614	consensus Predicted transporter (ABC superfamily)	97.51
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.5
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.5
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.5
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.5
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.5
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.5
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.5
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.49
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.49
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	97.49
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.49
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.49
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.49
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	97.49
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.48
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.48
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	97.48
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.48
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.48
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.48
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.47
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.47
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.47
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.47
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.47
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.47
cd03299	235	ABC_ModC_like Archeal protein closely related to M	97.46
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.46
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.46
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.45
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.45
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.45
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	97.44
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.44
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.44
PRK07667	193	uridine kinase; Provisional	97.44
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.44
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.44
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.44
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.44
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.43
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.43
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.43
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.43
COG4988	559	CydD ABC-type transport system involved in cytochr	97.43
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	97.42
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.42
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.42
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	97.41
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.41
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	97.41
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.41
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.41
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.41
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.4
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.4
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.4
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.4
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.4
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.4
PLN03073	718	ABC transporter F family; Provisional	97.4
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.4
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.39
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.39
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.39
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.39
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.39
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.39
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.39
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.39
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.39
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.39
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.38
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.38
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.38
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.38
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.37
PRK14974	336	cell division protein FtsY; Provisional	97.37
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.37
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.36
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.36
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.36
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.36
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.35
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	97.35
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.35
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.35
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.35
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.35
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.35
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.35
COG3910	233	Predicted ATPase [General function prediction only	97.34
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.34
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.34
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.34
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.34
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.34
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.34
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.33
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.33
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.33
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.32
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.32
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.32
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.32
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	97.32
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.32
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.31
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	97.31
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.31
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.31
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.31
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.31
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.31
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.3
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.3
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.3
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.3
PRK13531	498	regulatory ATPase RavA; Provisional	97.3
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.29
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	97.29
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	97.29

>PLN03210 Resistant to P

Probab=100.00  E-value=4.6e-57  Score=467.15  Aligned_cols=367  Identities=36%  Similarity=0.692  Sum_probs=318.2

Q ss_pred             CEEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCCC-CChhHHHhhhhhcccccccC
Q 017364            1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD-RNEPEFIVDIVKEISCKISA   79 (373)
Q Consensus         1 ~v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~   79 (373)
                      +|+||||+|||+|||+|+|.|+++|.++++..  ..+++++|++||+++++++|+.+.. ..|++++++|+.+|..++..
T Consensus       100 ~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~  177 (1153)
T PLN03210        100 LVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNL  177 (1153)
T ss_pred             eEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhcc
Confidence            59999999999999999999999999876653  3457999999999999999998765 77999999999999999887


Q ss_pred             cc-ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeec--hh---hhc---
Q 017364           80 KS-ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANV--RE---ISK---  150 (373)
Q Consensus        80 ~~-~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~---~~~---  150 (373)
                      .+ ...+.+|||+..++++..+|..+.+++++|+|+||||+||||||+.+++++..+|+..+|+...  ..   ...   
T Consensus       178 ~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~  257 (1153)
T PLN03210        178 TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSAN  257 (1153)
T ss_pred             ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhccccc
Confidence            76 5667899999999999999987777899999999999999999999999999999988887531  10   000   


Q ss_pred             ---ccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 017364          151 ---KSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRD  227 (373)
Q Consensus       151 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~  227 (373)
                         ......+..+++..++.........    ...+++.+.++++||||||+|+..+++.+.....++++|++||||||+
T Consensus       258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd  333 (1153)
T PLN03210        258 PDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD  333 (1153)
T ss_pred             ccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence               0112334555566655443222211    245778889999999999999999999998888888999999999999


Q ss_pred             hhhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHH
Q 017364          228 KHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQR  307 (373)
Q Consensus       228 ~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~  307 (373)
                      ..++...+....|+++.|+.++|++||+..+|+...+.+...+++.+|+++|+|+||||+++|++|++++..+|..++..
T Consensus       334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~  413 (1153)
T PLN03210        334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR  413 (1153)
T ss_pred             HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            99988777788999999999999999999999877666678899999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHhchhCCch-hhHHHHhhhcccCCCCCHHHHHHHHHhCCCCcccchhhhhccCC
Q 017364          308 LERDPENEILDVLQISFDGLKE-TEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENLY  373 (373)
Q Consensus       308 l~~~~~~~i~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~L  373 (373)
                      ++......+..+|+.||+.|++ .+|.||+++|||+++.+.+.+..++..+++.+..+++.|++|||
T Consensus       414 L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksL  480 (1153)
T PLN03210        414 LRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSL  480 (1153)
T ss_pred             HHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCC
Confidence            9988888999999999999986 59999999999999999999999999999999999999999997

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=3.9e-42  Score=307.41  Aligned_cols=269  Identities=33%  Similarity=0.501  Sum_probs=209.3

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH--HhccccceEEEeechhhhcccCHHHHHHHHHHHHhC
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL--ISHEFEASCFLANVREISKKSGLVFLQKQLISQLLN  167 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      |+.++++|.+.|....++.++|+|+|++|+||||||..++++  ++.+|+.++|+..    ........+...++..+..
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~   76 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGE   76 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccc
Confidence            788999999999986677899999999999999999999988  7889998999863    3334446777778877655


Q ss_pred             CCCC--CCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCC-CceEeCCC
Q 017364          168 LPDS--GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV-DEVYMHEH  244 (373)
Q Consensus       168 ~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~-~~~~~l~~  244 (373)
                      ....  ...+.......+.+.+.++++||||||+++...++.+...++....|++||+|||+..++..... ...+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~  156 (287)
T PF00931_consen   77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP  156 (287)
T ss_dssp             C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred             cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5332  34566778889999999999999999999999998888777666779999999999987665533 57899999


Q ss_pred             CCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHHHHHhcCC------CCchH
Q 017364          245 LNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG-RTIAEWESALQRLERD------PENEI  316 (373)
Q Consensus       245 L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~------~~~~i  316 (373)
                      |+.+|+++||.+.++... ...+...+.+++|++.|+|+||||.++|++|+. .+..+|...++.+...      ....+
T Consensus       157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~  236 (287)
T PF00931_consen  157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV  236 (287)
T ss_dssp             --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999987654 223344567899999999999999999999954 3567788888776543      24679


Q ss_pred             HHHHHhchhCCchhhHHHHhhhcccCCCCC--HHHHHHHHHhCCCCcc
Q 017364          317 LDVLQISFDGLKETEKKIFLDIACFYKGKY--IDYVTKILNYCDFDPI  362 (373)
Q Consensus       317 ~~~l~~s~~~L~~~~~~~l~~la~f~~~~~--~~~l~~l~~~~~~~~~  362 (373)
                      ..++..||+.|+++.|+||.+||+||.++.  .+.|+++|.++|+...
T Consensus       237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            999999999999999999999999999875  9999999999998654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-41  Score=334.80  Aligned_cols=280  Identities=30%  Similarity=0.400  Sum_probs=242.3

Q ss_pred             ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH---HhccccceEEEeechhhhcccCHHHHHHHHHHH
Q 017364           88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL---ISHEFEASCFLANVREISKKSGLVFLQKQLISQ  164 (373)
Q Consensus        88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      ||.++.++.+...|.....  .+++|+||||+||||||+.+++.   +..+|+..+|+.    +++......++.+++..
T Consensus       161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~  234 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER  234 (889)
T ss_pred             ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence            9999999999999987654  89999999999999999999985   567899999998    67788888999999988


Q ss_pred             HhCCCCC-CCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh-cCCCceEeC
Q 017364          165 LLNLPDS-GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA-HGVDEVYMH  242 (373)
Q Consensus       165 ~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~-~~~~~~~~l  242 (373)
                      +...... ...+.......+.+.|.++|+||||||+|+...|+.+...++...+|++|++|||+..++.. ++....+++
T Consensus       235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v  314 (889)
T KOG4658|consen  235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV  314 (889)
T ss_pred             hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence            7553322 22334677888999999999999999999999999999999988889999999999999988 777788999


Q ss_pred             CCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHHHHHhcCC-------CC
Q 017364          243 EHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG-RTIAEWESALQRLERD-------PE  313 (373)
Q Consensus       243 ~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~-------~~  313 (373)
                      +.|+++|||.||++.++... ...+..++++++++++|+|+|||+..+|+.|+. .+..+|+.+++.+...       ..
T Consensus       315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~  394 (889)
T KOG4658|consen  315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME  394 (889)
T ss_pred             cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence            99999999999999997753 333458899999999999999999999999987 5677999999987543       13


Q ss_pred             chHHHHHHhchhCCchhhHHHHhhhcccCCCC--CHHHHHHHHHhCCCCc------------ccchhhhhccCC
Q 017364          314 NEILDVLQISFDGLKETEKKIFLDIACFYKGK--YIDYVTKILNYCDFDP------------IIGIGGLIENLY  373 (373)
Q Consensus       314 ~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~------------~~~l~~L~~~~L  373 (373)
                      +.+..++..||+.|+++.|.||+|||+||+++  +.+.|+.+|+++||..            ...++.|++++|
T Consensus       395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~L  468 (889)
T KOG4658|consen  395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASL  468 (889)
T ss_pred             hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHH
Confidence            56889999999999999999999999999998  5789999999999642            356777777764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.62  E-value=4.3e-14  Score=145.99  Aligned_cols=267  Identities=15%  Similarity=0.114  Sum_probs=160.7

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ..+..+|-|...++.+...     ...+++.|+||+|.||||++..++...    +.+.|+. ...  ...+...+...+
T Consensus        11 ~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~--~d~~~~~f~~~l   78 (903)
T PRK04841         11 VRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE--SDNQPERFASYL   78 (903)
T ss_pred             CCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc--ccCCHHHHHHHH
Confidence            3456788888777766532     235899999999999999999988632    2678885 221  122333333444


Q ss_pred             HHHHhCCCCC------------CCcchhhhHHHHHHhh-C-CCceEEEecccccH------HHHHHHhcCCCCCCCCcEE
Q 017364          162 ISQLLNLPDS------------GVWNVYDGMNMIRSRL-R-HKKVLLVIDDVIEL------QQLESLAGKHDWFGIGSRI  221 (373)
Q Consensus       162 ~~~~~~~~~~------------~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~------~~l~~l~~~~~~~~~g~~i  221 (373)
                      +..+......            ...+.......+...+ . +.+++|||||++..      +.+..+....   .++.++
T Consensus        79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~l  155 (903)
T PRK04841         79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTL  155 (903)
T ss_pred             HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEE
Confidence            4433211100            0012222233333333 2 67899999999643      2344555443   346778


Q ss_pred             EEEeCChhhHh--hcC-CCceEeCC----CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364          222 FITSRDKHLLM--AHG-VDEVYMHE----HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF  294 (373)
Q Consensus       222 liTtR~~~~~~--~~~-~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  294 (373)
                      |+|||...-..  ... ......+.    +|+.+|+.+||....+..     -..+...++++.|+|+|+++..++..+.
T Consensus       156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~  230 (903)
T PRK04841        156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSAR  230 (903)
T ss_pred             EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            89999842111  110 12234455    999999999998765322     1235578999999999999999988775


Q ss_pred             CCCHHHHHHHHHHhcCCCCchHHHHHHh-chhCCchhhHHHHhhhcccCCCCCHHHHHHHHHhCCCCcccchhhhhccC
Q 017364          295 GRTIAEWESALQRLERDPENEILDVLQI-SFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENL  372 (373)
Q Consensus       295 ~~~~~~~~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~  372 (373)
                      ..... .......+...+...+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+..  +....++.|.+..
T Consensus       231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~  305 (903)
T PRK04841        231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQG  305 (903)
T ss_pred             hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCC
Confidence            43210 1111122212123456665444 48999999999999999987 77777666665432  2345555555443

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.61  E-value=2.1e-14  Score=124.25  Aligned_cols=198  Identities=22%  Similarity=0.245  Sum_probs=102.7

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH------HHH
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL------QKQ  160 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~~  160 (373)
                      |+||+.+++.|...+..+..  +.+.|+|+.|+|||+|++.+.+.........+|+........ ......      ...
T Consensus         1 F~gR~~el~~l~~~l~~~~~--~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~   77 (234)
T PF01637_consen    1 FFGREKELEKLKELLESGPS--QHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE   77 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH--S--SEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHhhcC--cEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence            79999999999999987533  789999999999999999999988554334444432211110 001111      111


Q ss_pred             HHHHH---hCCCC------CCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----------HHHHHhcCCCCCCCC
Q 017364          161 LISQL---LNLPD------SGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----------QLESLAGKHDWFGIG  218 (373)
Q Consensus       161 ~~~~~---~~~~~------~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----------~l~~l~~~~~~~~~g  218 (373)
                      +...+   .....      ............+.+.+  .+++++||+||++...           .+..+...... ..+
T Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~  156 (234)
T PF01637_consen   78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN  156 (234)
T ss_dssp             CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred             HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence            11111   11100      01112222333333333  2345999999986544           12233333221 223


Q ss_pred             cEEEEEeCChhhHhh--------cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          219 SRIFITSRDKHLLMA--------HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       219 ~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      ..+++++........        .+....+.+++|+.+++.+++....... ...+...+..++|+..+||+|..|..+
T Consensus       157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~  234 (234)
T PF01637_consen  157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL  234 (234)
T ss_dssp             EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred             ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence            445555555544333        2233459999999999999998765322 111234566899999999999998753

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.58  E-value=7e-13  Score=123.91  Aligned_cols=251  Identities=18%  Similarity=0.163  Sum_probs=150.2

Q ss_pred             ccccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      ..|+.++||+++++.+...+.+.  ...++.+.|+|++|+|||++++.+++.+..... ..+.+.++   ........+.
T Consensus        27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~---~~~~~~~~~~  103 (394)
T PRK00411         27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINC---QIDRTRYAIF  103 (394)
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEEC---CcCCCHHHHH
Confidence            45678999999999999998643  233466889999999999999999998765542 22222222   2223445666


Q ss_pred             HHHHHHHhCC-CCCCCcchhhhHHHHHHhhC--CCceEEEecccccHH------HHHHHhcCCCCC-CCCcEEEEEeCCh
Q 017364          159 KQLISQLLNL-PDSGVWNVYDGMNMIRSRLR--HKKVLLVIDDVIELQ------QLESLAGKHDWF-GIGSRIFITSRDK  228 (373)
Q Consensus       159 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~l~~l~~~~~~~-~~g~~iliTtR~~  228 (373)
                      ..++..+.+. .+....+.......+.+.+.  +++.+||||+++...      .+..+....... +.+..+|.++.+.
T Consensus       104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~  183 (394)
T PRK00411        104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL  183 (394)
T ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence            6777776542 22222345555666666654  456899999997643      344444322211 1133366666654


Q ss_pred             hhHhhc-------CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh----CCCchHHHHHHHHh----
Q 017364          229 HLLMAH-------GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA----GGLPLALKVLGSFL----  293 (373)
Q Consensus       229 ~~~~~~-------~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l----  293 (373)
                      .+....       .....+.++|++.++..+++..++...........+..+.+++.+    |..+.++..+-...    
T Consensus       184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~  263 (394)
T PRK00411        184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE  263 (394)
T ss_pred             chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            332211       112467899999999999998776321111112234455555555    44666666654322    


Q ss_pred             -cCC---CHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364          294 -FGR---TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY  342 (373)
Q Consensus       294 -~~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~  342 (373)
                       .+.   +......+++.+       -...+...+..||.++|.++..++...
T Consensus       264 ~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~  309 (394)
T PRK00411        264 REGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLL  309 (394)
T ss_pred             HcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence             111   345555555544       123445668899999998888777543

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.51  E-value=1.3e-11  Score=114.24  Aligned_cols=249  Identities=19%  Similarity=0.131  Sum_probs=143.4

Q ss_pred             ccccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhhhcccCH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREISKKSGL  154 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~  154 (373)
                      ..|+.++||+.+++.|...+.+.  ....+.+.|+|++|+|||++++.+++.+.....     ..+.+.++   ......
T Consensus        12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~---~~~~~~   88 (365)
T TIGR02928        12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC---QILDTL   88 (365)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC---CCCCCH
Confidence            34468999999999999998742  223467899999999999999999987654322     12222222   222344


Q ss_pred             HHHHHHHHHHHhC--CCC-CCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----HHHHHhcCC---CCCCCCcEE
Q 017364          155 VFLQKQLISQLLN--LPD-SGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----QLESLAGKH---DWFGIGSRI  221 (373)
Q Consensus       155 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----~l~~l~~~~---~~~~~g~~i  221 (373)
                      ..+...++..+.+  ... ....+..+....+.+.+  .+++.+||||+++...     .+..+....   ...+....+
T Consensus        89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l  168 (365)
T TIGR02928        89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV  168 (365)
T ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence            5666677776642  211 11123334444455554  3567899999997651     233333221   111123445


Q ss_pred             EEEeCChhhHhhc------C-CCceEeCCCCCHhHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          222 FITSRDKHLLMAH------G-VDEVYMHEHLNYDEALGLFCLKAF---KSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       222 liTtR~~~~~~~~------~-~~~~~~l~~L~~~ea~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      |.+++.......+      . ....+.++|++.++..+++..++.   ......+...+.+..++..+.|.|..+..+..
T Consensus       169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~  248 (365)
T TIGR02928       169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR  248 (365)
T ss_pred             EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            6666544332111      1 124688999999999999988763   11112222223455566677788865544332


Q ss_pred             Hh------cC---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcc
Q 017364          292 FL------FG---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIAC  340 (373)
Q Consensus       292 ~l------~~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~  340 (373)
                      ..      .+   -+.+....+.+.+.       ...+..++..||.+++.++..++.
T Consensus       249 ~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~  299 (365)
T TIGR02928       249 VAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIAN  299 (365)
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            21      11   12344444444431       234456678999998877777663

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.50  E-value=4.4e-13  Score=120.73  Aligned_cols=249  Identities=16%  Similarity=0.104  Sum_probs=144.9

Q ss_pred             cCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ..|||++.+++.+..++...   ....+.+.|+|++|+|||+||+.+++.+...+.    ....   ........ ....
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~---~~~~~~~~-l~~~   75 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG---PALEKPGD-LAAI   75 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eecc---chhcCchh-HHHH
Confidence            46999999999998888631   223466889999999999999999987754321    1110   00000011 1111


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCC-------------------CCCCCCcE
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKH-------------------DWFGIGSR  220 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~-------------------~~~~~g~~  220 (373)
                      +..                       .+...+|++|+++..  ...+.+...+                   ....+.+-
T Consensus        76 l~~-----------------------~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l  132 (305)
T TIGR00635        76 LTN-----------------------LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL  132 (305)
T ss_pred             HHh-----------------------cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence            111                       112345666665421  1111111100                   00012344


Q ss_pred             EEEEeCChhhHhh--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCH
Q 017364          221 IFITSRDKHLLMA--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTI  298 (373)
Q Consensus       221 iliTtR~~~~~~~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~  298 (373)
                      |..|++...+...  ......+.+++++.++..+++.+.+.....  ....+....|++.|+|.|..+..++..+.    
T Consensus       133 i~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~----  206 (305)
T TIGR00635       133 VGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVR----  206 (305)
T ss_pred             EEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHH----
Confidence            4556665433221  113456789999999999999887753222  23356788999999999987766665431    


Q ss_pred             HHHHHHH-HHhcCCCC---chHHHHHHhchhCCchhhHHHHh-hhcccCCC-CCHHHHHHHHHhCCCCcccchh-hhhcc
Q 017364          299 AEWESAL-QRLERDPE---NEILDVLQISFDGLKETEKKIFL-DIACFYKG-KYIDYVTKILNYCDFDPIIGIG-GLIEN  371 (373)
Q Consensus       299 ~~~~~~l-~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~~~  371 (373)
                         ..+. ..-.....   ......+...+..+++.++..|. .++.+..+ ++.+.+...++.+.......++ .|+++
T Consensus       207 ---~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~  283 (305)
T TIGR00635       207 ---DFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQI  283 (305)
T ss_pred             ---HHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHc
Confidence               1000 00000011   11122245567889998888777 44666543 6789999999888888888888 59887


Q ss_pred             CC
Q 017364          372 LY  373 (373)
Q Consensus       372 ~L  373 (373)
                      .|
T Consensus       284 ~l  285 (305)
T TIGR00635       284 GF  285 (305)
T ss_pred             CC
Confidence            65

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.49  E-value=2.2e-13  Score=123.63  Aligned_cols=254  Identities=19%  Similarity=0.127  Sum_probs=149.1

Q ss_pred             cccccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364           81 SETLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        81 ~~~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      |.....|+|++..++.+...+..   .....+.+.|+|++|+|||+||+.+++.+...+    ..........    ...
T Consensus        21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~----~~~~~~~~~~----~~~   92 (328)
T PRK00080         21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI----RITSGPALEK----PGD   92 (328)
T ss_pred             cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe----EEEecccccC----hHH
Confidence            34456799999999998877763   223356789999999999999999999875432    1111100000    001


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--H---HHHHhcCCC----------------CCC
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--Q---LESLAGKHD----------------WFG  216 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~---l~~l~~~~~----------------~~~  216 (373)
                      ...++..                      + ....+|++|+++...  .   +...+....                ...
T Consensus        93 l~~~l~~----------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~  149 (328)
T PRK00080         93 LAAILTN----------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP  149 (328)
T ss_pred             HHHHHHh----------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence            1111111                      1 223466777765321  1   111111000                001


Q ss_pred             CCcEEEEEeCChhhHhhc--CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364          217 IGSRIFITSRDKHLLMAH--GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF  294 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  294 (373)
                      +.+-|..|++...+...+  .....+.+++++.++..+++.+.+......  ..++.+..|++.|+|.|..+..+...+.
T Consensus       150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~  227 (328)
T PRK00080        150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR  227 (328)
T ss_pred             CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            234344566544322211  123468999999999999999887543322  3456789999999999977666665441


Q ss_pred             CCCHHHHHHHHHHhcCCCC---chHHHHHHhchhCCchhhHHHHh-hhcccCCC-CCHHHHHHHHHhCCCCcccchh-hh
Q 017364          295 GRTIAEWESALQRLERDPE---NEILDVLQISFDGLKETEKKIFL-DIACFYKG-KYIDYVTKILNYCDFDPIIGIG-GL  368 (373)
Q Consensus       295 ~~~~~~~~~~l~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L  368 (373)
                           .|.... .-+....   ......+...+..|++..+..+. .+..|..+ +..+.+...++.+....+..++ .|
T Consensus       228 -----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L  301 (328)
T PRK00080        228 -----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL  301 (328)
T ss_pred             -----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence                 111110 0000111   12223445567789998888886 66677654 5789999999887777777788 78


Q ss_pred             hccCC
Q 017364          369 IENLY  373 (373)
Q Consensus       369 ~~~~L  373 (373)
                      ++..|
T Consensus       302 i~~~l  306 (328)
T PRK00080        302 IQQGF  306 (328)
T ss_pred             HHcCC
Confidence            77654

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.49  E-value=6.9e-14  Score=132.16  Aligned_cols=230  Identities=17%  Similarity=0.224  Sum_probs=124.7

Q ss_pred             EEeeeecccccccccccchHHHHHHHhHHHhh----------hhHHHHHHHHHHHHHHHhhcCCcCCCCChhHHHhhhhh
Q 017364            2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFR----------ENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVK   71 (373)
Q Consensus         2 v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   71 (373)
                      |++.+++++++.++.|.|||..++++.+++.+          +..++++.|.++....++.+.   ...+..+..+++..
T Consensus       216 V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k---~a~sr~k~l~k~~~  292 (530)
T COG0488         216 VATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAK---KAKSRIKRLEKLEA  292 (530)
T ss_pred             HhhheEEecCCceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHHHh
Confidence            67889999999999999999999998877522          222333334433333322211   11222233333331


Q ss_pred             c--cc-ccc--c-C--ccccc---------------cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHH
Q 017364           72 E--IS-CKI--S-A--KSETL---------------KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVV  128 (373)
Q Consensus        72 ~--v~-~~~--~-~--~~~~~---------------~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~  128 (373)
                      .  .. +..  . .  ..+.+               ..+-|....++.+...+..+    ..|+|+|++|+|||||.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g----~riaiiG~NG~GKSTLlk~l  368 (530)
T COG0488         293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRG----DRIAIVGPNGAGKSTLLKLL  368 (530)
T ss_pred             hhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCC----CEEEEECCCCCCHHHHHHHH
Confidence            0  10 100  0 0  00000               11212222344455444455    67999999999999999999


Q ss_pred             HHHHhccccceEEEeec--hhhhccc-------CH------------HHHHHHHHHHHhCCCC-----CCCcchhh-hHH
Q 017364          129 YDLISHEFEASCFLANV--REISKKS-------GL------------VFLQKQLISQLLNLPD-----SGVWNVYD-GMN  181 (373)
Q Consensus       129 ~~~~~~~f~~~~~~~~~--~~~~~~~-------~~------------~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~  181 (373)
                      .....+.-+.+.|-..+  .++.+..       ..            ....+..+..++=...     ...-+-.+ ..-
T Consensus       369 ~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl  448 (530)
T COG0488         369 AGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL  448 (530)
T ss_pred             hhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH
Confidence            88766553323322111  1111111       11            1112222222111100     00112222 233


Q ss_pred             HHHHhhCCCceEEEec------ccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCCC
Q 017364          182 MIRSRLRHKKVLLVID------DVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEH  244 (373)
Q Consensus       182 ~l~~~l~~~~~LlvlD------dv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~  244 (373)
                      .+...+..++.+||||      |+++.+.++..+..++    |+ ||++||++.+.... +..++.+.+
T Consensus       449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~v-a~~i~~~~~  511 (530)
T COG0488         449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRV-ATRIWLVED  511 (530)
T ss_pred             HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhh-cceEEEEcC
Confidence            4556667889999999      4567777888888876    66 99999999998886 466777764

>COG3899 Predicted ATPase [General function prediction only]

Probab=99.48  E-value=1.6e-12  Score=130.57  Aligned_cols=265  Identities=16%  Similarity=0.231  Sum_probs=163.1

Q ss_pred             cccchhhHHHHHHHHhcCCCC-eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee-chhhhccc---CHHHHHHHH
Q 017364           87 LVGLDSRLEKLRFLINKGPTD-VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN-VREISKKS---GLVFLQKQL  161 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~---~~~~~~~~~  161 (373)
                      ++||+.+++.|...+..-+.+ ..++.+.|.+|||||+|++++...+...  ...++.. +.+.....   .+....+.+
T Consensus         2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~l   79 (849)
T COG3899           2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRDL   79 (849)
T ss_pred             CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHHH
Confidence            789999999999988754333 5799999999999999999999987765  2222211 11111111   112222222


Q ss_pred             HHHHhCCCCCC---------------------------------C-------cchhhh-----HHHHHHhh-CCCceEEE
Q 017364          162 ISQLLNLPDSG---------------------------------V-------WNVYDG-----MNMIRSRL-RHKKVLLV  195 (373)
Q Consensus       162 ~~~~~~~~~~~---------------------------------~-------~~~~~~-----~~~l~~~l-~~~~~Llv  195 (373)
                      ..+++......                                 .       ......     ...+.... ..++.++|
T Consensus        80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~  159 (849)
T COG3899          80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV  159 (849)
T ss_pred             HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence            22221111000                                 0       000011     11122222 45699999


Q ss_pred             ecccc-----cHHHHHHHhcCCC--CC-CCCcEEEEEeCCh--hhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCC
Q 017364          196 IDDVI-----ELQQLESLAGKHD--WF-GIGSRIFITSRDK--HLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPW  265 (373)
Q Consensus       196 lDdv~-----~~~~l~~l~~~~~--~~-~~g~~iliTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~  265 (373)
                      +||+.     +..-+..++....  .+ .+....+.|.+..  .........+.+.|.||+..+...+.........   
T Consensus       160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---  236 (849)
T COG3899         160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---  236 (849)
T ss_pred             EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence            99993     2233444444332  00 0111122233322  1112223446899999999999999988875432   


Q ss_pred             chHHHHHHHHHHHhCCCchHHHHHHHHhcCC-------CHHHHHHHHHHhcCCC-CchHHHHHHhchhCCchhhHHHHhh
Q 017364          266 KGYEQLSKSVVKYAGGLPLALKVLGSFLFGR-------TIAEWESALQRLERDP-ENEILDVLQISFDGLKETEKKIFLD  337 (373)
Q Consensus       266 ~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~~~~l~~  337 (373)
                      ....+..+.|++++.|+|+++..+...+...       +...|......+.... ..++...+...++.||...|.++..
T Consensus       237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~  316 (849)
T COG3899         237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA  316 (849)
T ss_pred             cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            2335678999999999999999999888542       3445655555443322 2335557889999999999999999


Q ss_pred             hcccCCCCCHHHHHHHHHh
Q 017364          338 IACFYKGKYIDYVTKILNY  356 (373)
Q Consensus       338 la~f~~~~~~~~l~~l~~~  356 (373)
                      .||+++.++.+.|..++..
T Consensus       317 AA~iG~~F~l~~La~l~~~  335 (849)
T COG3899         317 AACIGNRFDLDTLAALAED  335 (849)
T ss_pred             HHHhCccCCHHHHHHHHhh
Confidence            9999999998888888764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.41  E-value=3e-11  Score=106.83  Aligned_cols=177  Identities=19%  Similarity=0.192  Sum_probs=104.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHH----
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIR----  184 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----  184 (373)
                      +.++|+|++|+|||||++.+++.+...-...+++.     ........+...+...+ +.+... .+.......+.    
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~l-G~~~~~-~~~~~~~~~l~~~l~  116 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADF-GLETEG-RDKAALLRELEDFLI  116 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHc-CCCCCC-CCHHHHHHHHHHHHH
Confidence            68999999999999999999988763311222322     11223445555555543 332221 11122222222    


Q ss_pred             Hh-hCCCceEEEecccccH--HHHHHHh---cCCCCCCCCcEEEEEeCChhhHhhc----------CCCceEeCCCCCHh
Q 017364          185 SR-LRHKKVLLVIDDVIEL--QQLESLA---GKHDWFGIGSRIFITSRDKHLLMAH----------GVDEVYMHEHLNYD  248 (373)
Q Consensus       185 ~~-l~~~~~LlvlDdv~~~--~~l~~l~---~~~~~~~~g~~iliTtR~~~~~~~~----------~~~~~~~l~~L~~~  248 (373)
                      .. ..+++.++|+||++..  ..++.+.   ...........|++|.... +....          .....+.+++|+.+
T Consensus       117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~  195 (269)
T TIGR03015       117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE  195 (269)
T ss_pred             HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence            22 2677889999998753  2344332   2211111223445555432 21111          12346789999999


Q ss_pred             HHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          249 EALGLFCLKAFKSH--KPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       249 ea~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      |..+++........  .......+..+.|++.++|+|..|..++..+
T Consensus       196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            99999987653221  1122345789999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF05729 NACHT: NACHT domain

Probab=99.35  E-value=1.7e-11  Score=100.10  Aligned_cols=142  Identities=23%  Similarity=0.284  Sum_probs=83.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMI  183 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  183 (373)
                      +++.|+|.+|+||||+++.++..+.....     ...++..............+...+.......    ..........+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~   76 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEELLQEL   76 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHHHHHH
Confidence            57899999999999999999988765432     2233333333333222222222332222111    11111111111


Q ss_pred             HHhhCCCceEEEecccccHHH-------------HHHHhcCCCCCCCCcEEEEEeCChhh---HhhcCCCceEeCCCCCH
Q 017364          184 RSRLRHKKVLLVIDDVIELQQ-------------LESLAGKHDWFGIGSRIFITSRDKHL---LMAHGVDEVYMHEHLNY  247 (373)
Q Consensus       184 ~~~l~~~~~LlvlDdv~~~~~-------------l~~l~~~~~~~~~g~~iliTtR~~~~---~~~~~~~~~~~l~~L~~  247 (373)
                      .  ...++++||+|++++...             +..+...  ...+++++++|+|....   .........+.+.+|+.
T Consensus        77 ~--~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~  152 (166)
T PF05729_consen   77 L--EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE  152 (166)
T ss_pred             H--HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence            1  257899999999864322             3333333  12358999999998765   22333445899999999


Q ss_pred             hHHHHHHHHhh
Q 017364          248 DEALGLFCLKA  258 (373)
Q Consensus       248 ~ea~~l~~~~~  258 (373)
                      ++..+++++..
T Consensus       153 ~~~~~~~~~~f  163 (166)
T PF05729_consen  153 EDIKQYLRKYF  163 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999997654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.34  E-value=7.1e-11  Score=113.59  Aligned_cols=267  Identities=16%  Similarity=0.114  Sum_probs=163.8

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ..+.+.|-|...++.+..    + .+.+.+.|..|+|.|||||+.+++. .......+.|+.-.   ....+...+.+.+
T Consensus        16 ~~~~~~v~R~rL~~~L~~----~-~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~yL   86 (894)
T COG2909          16 VRPDNYVVRPRLLDRLRR----A-NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLSYL   86 (894)
T ss_pred             CCcccccccHHHHHHHhc----C-CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHHHH
Confidence            345678888776666553    2 2459999999999999999999998 55556788888632   1234455566666


Q ss_pred             HHHHhCCCCCCC------------cchhhhHHHHHHhh--CCCceEEEeccccc------HHHHHHHhcCCCCCCCCcEE
Q 017364          162 ISQLLNLPDSGV------------WNVYDGMNMIRSRL--RHKKVLLVIDDVIE------LQQLESLAGKHDWFGIGSRI  221 (373)
Q Consensus       162 ~~~~~~~~~~~~------------~~~~~~~~~l~~~l--~~~~~LlvlDdv~~------~~~l~~l~~~~~~~~~g~~i  221 (373)
                      +..+....+...            .+.......+..-+  -.++..+||||.+-      ...++.++.+.|   ++..+
T Consensus        87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~l  163 (894)
T COG2909          87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENLTL  163 (894)
T ss_pred             HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCeEE
Confidence            555432222111            12222333333323  35689999999852      234666766655   58889


Q ss_pred             EEEeCChhhHhhcC---CCceEeCC----CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364          222 FITSRDKHLLMAHG---VDEVYMHE----HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF  294 (373)
Q Consensus       222 liTtR~~~~~~~~~---~~~~~~l~----~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  294 (373)
                      ++|||+..-+....   .+..++++    .|+.+|+.+||.......     ......+.+++.++|-+-|+..++-.++
T Consensus       164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~  238 (894)
T COG2909         164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALR  238 (894)
T ss_pred             EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence            99999885322110   11223332    489999999998766221     2344588999999999999999998887


Q ss_pred             C-CCHHHHHHHHHHhcCCCCchH-HHHHHhchhCCchhhHHHHhhhcccCCCCCHHHHHHHHHhCCCCcccchhhhhccC
Q 017364          295 G-RTIAEWESALQRLERDPENEI-LDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNYCDFDPIIGIGGLIENL  372 (373)
Q Consensus       295 ~-~~~~~~~~~l~~l~~~~~~~i-~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~~  372 (373)
                      + .+.+.-..-++   .. ..-+ .-....-++.||++.|.++..+|+++. +.-+....+.+.+  +....|+.|.++.
T Consensus       239 ~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~~g  311 (894)
T COG2909         239 NNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELERRG  311 (894)
T ss_pred             CCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHhCC
Confidence            4 33332211111   11 1112 224455689999999999999999853 3333344443322  2334455555544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.24  E-value=6.6e-10  Score=98.57  Aligned_cols=239  Identities=21%  Similarity=0.265  Sum_probs=137.9

Q ss_pred             cCcccchhhH---HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           85 KELVGLDSRL---EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        85 ~~~vGR~~~~---~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ..+||.+..+   .-|..++..+  .+....+|||+|+||||||+.+++.....|...--+        ..+. .-.+.+
T Consensus        24 de~vGQ~HLlg~~~~lrr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gv-kdlr~i   92 (436)
T COG2256          24 DEVVGQEHLLGEGKPLRRAVEAG--HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGV-KDLREI   92 (436)
T ss_pred             HHhcChHhhhCCCchHHHHHhcC--CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccH-HHHHHH
Confidence            4566655443   3444555544  456788999999999999999999766554322111        1111 111222


Q ss_pred             HHHHhCCCCCCCcchhhhHHHH-HHhhCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEE--EeCChhhHhh---
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMI-RSRLRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFI--TSRDKHLLMA---  233 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~ili--TtR~~~~~~~---  233 (373)
                                        ++.- .....+++.+|++|.|+  +..+-+.|++...   .|.-++|  ||-|+.+...   
T Consensus        93 ------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~AL  151 (436)
T COG2256          93 ------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPAL  151 (436)
T ss_pred             ------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHH
Confidence                              2222 22235789999999996  4556677777664   4665665  6666654211   


Q ss_pred             cCCCceEeCCCCCHhHHHHHHHHhhcCCC-----CCCchHHHHHHHHHHHhCCCchHHHHHHHHh---c-CC---CHHHH
Q 017364          234 HGVDEVYMHEHLNYDEALGLFCLKAFKSH-----KPWKGYEQLSKSVVKYAGGLPLALKVLGSFL---F-GR---TIAEW  301 (373)
Q Consensus       234 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l---~-~~---~~~~~  301 (373)
                      ..-..++.+++|+.++-..++.+.+....     ......++..+.++..++|-....-.+....   . ..   ..+..
T Consensus       152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l  231 (436)
T COG2256         152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELL  231 (436)
T ss_pred             hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence            12346899999999999999988442211     1111335577888999988766543333322   2 22   23444


Q ss_pred             HHHHHHhcC------CCCchHHHHHHhchhCCchhhHHHHhhhcccCCCCCHHHHHHHHHh
Q 017364          302 ESALQRLER------DPENEILDVLQISFDGLKETEKKIFLDIACFYKGKYIDYVTKILNY  356 (373)
Q Consensus       302 ~~~l~~l~~------~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~  356 (373)
                      .+.+.+-..      ..+-++..+|..|.+.=++++ .+..++-++..|.+...+.+.+..
T Consensus       232 ~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA-ALyylARmi~~GeDp~yiARRlv~  291 (436)
T COG2256         232 EEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA-ALYYLARMIEAGEDPLYIARRLVR  291 (436)
T ss_pred             HHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH-HHHHHHHHHhcCCCHHHHHHHHHH
Confidence            444443111      122456677777777655554 334444456666766655555433

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.22  E-value=5.6e-10  Score=104.41  Aligned_cols=178  Identities=24%  Similarity=0.296  Sum_probs=106.4

Q ss_pred             ccCcccchhhHHH---HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           84 LKELVGLDSRLEK---LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        84 ~~~~vGR~~~~~~---l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ...+||++..+..   +..++..+  ..+.+.|+|++|+||||||+.+++.....|..   +. ..    .... ...+.
T Consensus        11 l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-a~----~~~~-~~ir~   79 (413)
T PRK13342         11 LDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-AV----TSGV-KDLRE   79 (413)
T ss_pred             HHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-cc----cccH-HHHHH
Confidence            3569999887666   77777654  34678899999999999999999876543311   11 00    0111 11111


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEE--EeCChhhH--hh
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFI--TSRDKHLL--MA  233 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~ili--TtR~~~~~--~~  233 (373)
                      ++..                  .... ..+++.+|++|+++..  ...+.+...+.   .+..+++  ||.+....  ..
T Consensus        80 ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a  138 (413)
T PRK13342         80 VIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA  138 (413)
T ss_pred             HHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence            1111                  1111 1456789999999753  34445554443   2444444  34443211  11


Q ss_pred             -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKP-WKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                       ......+.+.+++.++...++.+.+...... .....+..+.+++.|+|.+..+..+...+
T Consensus       139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~  200 (413)
T PRK13342        139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA  200 (413)
T ss_pred             HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             1123678999999999999998765321111 12335678889999999998776555443

>PRK06893 DNA replication initiation factor; Validated

Probab=99.17  E-value=1.4e-09  Score=93.38  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=93.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      .+.+.|+|++|+|||+|+..+++........+.|+...    ..   ......                      +.+.+
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~~~~----------------------~~~~~   89 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYFSPA----------------------VLENL   89 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhhhHH----------------------HHhhc
Confidence            36789999999999999999999876555555665411    00   000001                      11111


Q ss_pred             CCCceEEEecccccH---HHH----HHHhcCCCCCCCCcEEEE-EeCC---------hhhHhhcCCCceEeCCCCCHhHH
Q 017364          188 RHKKVLLVIDDVIEL---QQL----ESLAGKHDWFGIGSRIFI-TSRD---------KHLLMAHGVDEVYMHEHLNYDEA  250 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~---~~l----~~l~~~~~~~~~g~~ili-TtR~---------~~~~~~~~~~~~~~l~~L~~~ea  250 (373)
                      . +.-+|+|||++..   ..+    -.+.....  ..|..+|+ |++.         +.+...+.....+++++++.++.
T Consensus        90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~--~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~  166 (229)
T PRK06893         90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK--EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQK  166 (229)
T ss_pred             c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHH--HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHH
Confidence            1 2358999999753   122    22222221  22445544 4443         23444455566889999999999


Q ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      ++++++.+......  ..+++.+-|++.+.|..-.+..+-..+
T Consensus       167 ~~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l  207 (229)
T PRK06893        167 IIVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL  207 (229)
T ss_pred             HHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            99999888543322  335678888888888877776665544

>COG3903 Predicted ATPase [General function prediction only]

Probab=99.15  E-value=1.2e-10  Score=103.89  Aligned_cols=250  Identities=20%  Similarity=0.249  Sum_probs=163.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      +.+.++|++||||||++-.+.. +...|....|+.+...+.+.........    ..++.+.   .+.+..+..+.....
T Consensus        15 RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~a----g~~gl~~---~~g~~~~~~~~~~~~   86 (414)
T COG3903          15 RLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLA----GALGLHV---QPGDSAVDTLVRRIG   86 (414)
T ss_pred             heeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHH----hhccccc---ccchHHHHHHHHHHh
Confidence            8899999999999999999999 8888988888877655544332222221    1112111   111223444566667


Q ss_pred             CCceEEEecccccHHH-----HHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCCCCCHh-HHHHHHHHhhcCCC
Q 017364          189 HKKVLLVIDDVIELQQ-----LESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEHLNYD-EALGLFCLKAFKSH  262 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~~-----l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~l~~~~~~~~~  262 (373)
                      .++.++++||......     +..+....    +...++.|+|+.-.   ......+.+++|+.. ++.++|...+....
T Consensus        87 ~rr~llvldncehl~~~~a~~i~all~~~----~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~  159 (414)
T COG3903          87 DRRALLVLDNCEHLLDACAALIVALLGAC----PRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA  159 (414)
T ss_pred             hhhHHHHhcCcHHHHHHHHHHHHHHHccc----hhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence            8899999999865432     33344333    25568889987633   224557788888876 78888866652211


Q ss_pred             ---CCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHH----hcCC------CCchHHHHHHhchhCCch
Q 017364          263 ---KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQR----LERD------PENEILDVLQISFDGLKE  329 (373)
Q Consensus       263 ---~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~  329 (373)
                         ...........+|++...|.|++|..+++..+.....+...-+..    +...      ........+..||.-|+.
T Consensus       160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg  239 (414)
T COG3903         160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG  239 (414)
T ss_pred             cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence               112233566889999999999999999999887665544443332    2222      224467788999999999


Q ss_pred             hhHHHHhhhcccCCCCCHHHHHHHHHhCC-----CCcccchhhhhccCC
Q 017364          330 TEKKIFLDIACFYKGKYIDYVTKILNYCD-----FDPIIGIGGLIENLY  373 (373)
Q Consensus       330 ~~~~~l~~la~f~~~~~~~~l~~l~~~~~-----~~~~~~l~~L~~~~L  373 (373)
                      -++-.|..++.|..+|+.+.....-....     +..-..+-.|++||+
T Consensus       240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~ksl  288 (414)
T COG3903         240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSL  288 (414)
T ss_pred             HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccc
Confidence            99999999999999998763333222211     222345555666654

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.10  E-value=5.8e-09  Score=101.63  Aligned_cols=171  Identities=18%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             cccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----c-ceEEEeechhhhcccC
Q 017364           83 TLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----E-ASCFLANVREISKKSG  153 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~~~~~  153 (373)
                      .|+.++||++|++.|...|.+   ++....++.|+|++|+|||+.++.++..+....     + ..+...++..   ...
T Consensus       753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~---Lst  829 (1164)
T PTZ00112        753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN---VVH  829 (1164)
T ss_pred             CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc---cCC
Confidence            457899999999999988874   222235678999999999999999998764321     1 2222223322   233


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC---CCceEEEecccccHH-----HHHHHhcCCCCCCCCcEEE--E
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR---HKKVLLVIDDVIELQ-----QLESLAGKHDWFGIGSRIF--I  223 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~-----~l~~l~~~~~~~~~g~~il--i  223 (373)
                      .......+..++.+..+.........+..+...+.   ....+||||+++...     .+-.+.....  ..+++|+  .
T Consensus       830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIG  907 (1164)
T PTZ00112        830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIA  907 (1164)
T ss_pred             HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEE
Confidence            44455555556544443333333344444444432   234689999997432     2322222211  1234433  3


Q ss_pred             EeCChhhH--------hhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364          224 TSRDKHLL--------MAHGVDEVYMHEHLNYDEALGLFCLKAF  259 (373)
Q Consensus       224 TtR~~~~~--------~~~~~~~~~~l~~L~~~ea~~l~~~~~~  259 (373)
                      +|.+..+.        ..+ ....+..+|++.++..+++..++.
T Consensus       908 ISNdlDLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe  950 (1164)
T PTZ00112        908 ISNTMDLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLE  950 (1164)
T ss_pred             ecCchhcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHH
Confidence            44332211        112 123467799999999999988874

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.09  E-value=1.5e-08  Score=92.81  Aligned_cols=201  Identities=15%  Similarity=0.139  Sum_probs=107.4

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cc-eEEEeechhhhcccCHHHHHHH-H
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EA-SCFLANVREISKKSGLVFLQKQ-L  161 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~~~~-~  161 (373)
                      ..++|++..++.+..++..+.  .+.+.++|++|+||||+|+.+++.+.... .. .+.+ ++...... ....+... .
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i-~~~~~~~~-~~~~~~~~~~   90 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF-NVADFFDQ-GKKYLVEDPR   90 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe-chhhhhhc-chhhhhcCcc
Confidence            568999999999999887652  35688999999999999999998865332 11 1222 22111000 00000000 0


Q ss_pred             HHHHhCCC-CCCCcchhhhHHHHHHh---h--CCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364          162 ISQLLNLP-DSGVWNVYDGMNMIRSR---L--RHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LLM  232 (373)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~~l~~~---l--~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~~  232 (373)
                      .....+.. .............+...   .  ...+-+||+||++...  ....+...+......+++|+|+.+.. ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~  170 (337)
T PRK12402         91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP  170 (337)
T ss_pred             hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence            00000000 00000111111111111   1  1334589999986432  22222222211233566777775542 222


Q ss_pred             hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      .+ .....+.+.+++.++...++...+......  ...+....+++.++|++-.+.....
T Consensus       171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~l~  228 (337)
T PRK12402        171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILTLQ  228 (337)
T ss_pred             hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            11 123578889999999999998765332222  3356788999999998777655443

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.07  E-value=2.2e-08  Score=96.93  Aligned_cols=196  Identities=13%  Similarity=0.129  Sum_probs=111.4

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-.++||.+..++.|...+..+. -.+.+.++|+.|+||||+++.+++.+.......  ...+       +.......+.
T Consensus        14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~--~~PC-------G~C~sCr~I~   83 (830)
T PRK07003         14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT--SQPC-------GVCRACREID   83 (830)
T ss_pred             cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC--CCCC-------cccHHHHHHh
Confidence            34579999999999999988652 246678999999999999999998764321000  0000       0000000000


Q ss_pred             H----HHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364          163 S----QLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKHLLM  232 (373)
Q Consensus       163 ~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~~~~  232 (373)
                      .    .+..........+++....+...    ..++.-++|||+++...  .+..++..+.....+.++|++|++..-..
T Consensus        84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp  163 (830)
T PRK07003         84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP  163 (830)
T ss_pred             cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence            0    00000000001111111111111    12345688999997543  35555554433344778888887764321


Q ss_pred             -h-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHHH
Q 017364          233 -A-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVLG  290 (373)
Q Consensus       233 -~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~  290 (373)
                       . ..-...+.+.+++.++..+.+...+.....  ....+....|++.++|... +|.++-
T Consensus       164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLLd  222 (830)
T PRK07003        164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLTD  222 (830)
T ss_pred             chhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence             1 122357899999999999999877643222  2335668889999988664 555533

>PTZ00202 tuzin; Provisional

Probab=99.06  E-value=2.1e-07  Score=84.60  Aligned_cols=162  Identities=16%  Similarity=0.172  Sum_probs=96.6

Q ss_pred             ccccccCcccchhhHHHHHHHHhcCCC-CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHH
Q 017364           80 KSETLKELVGLDSRLEKLRFLINKGPT-DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        80 ~~~~~~~~vGR~~~~~~l~~~l~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      .|..+..|+||+.++..+...|...+. .+++++|+|++|+|||||++.+.....    ...++.+.      .+...++
T Consensus       257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp------rg~eElL  326 (550)
T PTZ00202        257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV------RGTEDTL  326 (550)
T ss_pred             CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC------CCHHHHH
Confidence            346678999999999999999974332 357999999999999999999997554    23444332      2557777


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh-----C-CCceEEEec--ccccHHH-H---HHHhcCCCCCCCCcEEEEEeC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-----R-HKKVLLVID--DVIELQQ-L---ESLAGKHDWFGIGSRIFITSR  226 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlvlD--dv~~~~~-l---~~l~~~~~~~~~g~~iliTtR  226 (373)
                      ..++..+.-.+..   ...++...+.+.+     . +++.+||+-  +=.+..- .   -.+...    ..-|.|++---
T Consensus       327 r~LL~ALGV~p~~---~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~evp  399 (550)
T PTZ00202        327 RSVVKALGVPNVE---ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEVP  399 (550)
T ss_pred             HHHHHHcCCCCcc---cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeeeh
Confidence            8888776532221   2223333333332     2 566666664  2222111 1   111111    12455665443


Q ss_pred             ChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          227 DKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       227 ~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      -+.+-.   .+.--..|-+++++.++|.++.....
T Consensus       400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~  434 (550)
T PTZ00202        400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI  434 (550)
T ss_pred             HhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence            332211   11223468899999999999876544

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.04  E-value=8.1e-08  Score=88.34  Aligned_cols=194  Identities=14%  Similarity=0.140  Sum_probs=109.3

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+........         ...........+..
T Consensus        15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---------~pc~~c~~c~~~~~   84 (363)
T PRK14961         15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---------NPCRKCIICKEIEK   84 (363)
T ss_pred             hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCCCCHHHHHHhc
Confidence            3578999999999999887652 2467899999999999999999987642211000         00000000000000


Q ss_pred             H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364          164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LL  231 (373)
Q Consensus       164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~  231 (373)
                      .    +...........+. ...+.+.+     .+++-++|+|+++...  .++.++..+........+|++|.+.. +.
T Consensus        85 ~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~  163 (363)
T PRK14961         85 GLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP  163 (363)
T ss_pred             CCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence            0    00000000001111 11111111     2345699999997543  35555555544345666777776543 22


Q ss_pred             hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ... +....+++.+++.++..+.+...+.....  ...++.+..|++.++|.|..+..+.
T Consensus       164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al~~l  221 (363)
T PRK14961        164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDALNLL  221 (363)
T ss_pred             HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            221 12357899999999999988776533221  1234567889999999887544333

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.02  E-value=1.4e-08  Score=87.42  Aligned_cols=173  Identities=18%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             cCccc--chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           85 KELVG--LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        85 ~~~vG--R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ++|++  ....++.+..++...  ..+.+.|+|++|+|||+||+.+++.........+++ ++......      ...++
T Consensus        15 ~~~~~~~~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i-~~~~~~~~------~~~~~   85 (226)
T TIGR03420        15 DNFYAGGNAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL-PLAELAQA------DPEVL   85 (226)
T ss_pred             cCcCcCCcHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE-eHHHHHHh------HHHHH
Confidence            34553  334577777765432  247899999999999999999998765444344444 22222110      00111


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh------
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH------  229 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~------  229 (373)
                                            ..+.+ .-+|+|||++...       .+..+.....  ..+..+|+||+...      
T Consensus        86 ----------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~--~~~~~iIits~~~~~~~~~~  140 (226)
T TIGR03420        86 ----------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVR--EAGGRLLIAGRAAPAQLPLR  140 (226)
T ss_pred             ----------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHH--HcCCeEEEECCCChHHCCcc
Confidence                                  11122 3489999996432       1222222111  12346888887532      


Q ss_pred             ---hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          230 ---LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       230 ---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                         +.........+.+++++.++...++...+.....  ....+..+.+.+.+.|+|..+..+...+
T Consensus       141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~~  205 (226)
T TIGR03420       141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDAL  205 (226)
T ss_pred             cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence               1222222457899999999999998765432221  1334667888888999998888776544

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.02  E-value=5.4e-08  Score=88.32  Aligned_cols=184  Identities=14%  Similarity=0.136  Sum_probs=105.0

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ  164 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      ..++|++..++.+..++..+.  .+.+.|+|++|+||||+++.+++.+........++. .. .+...... .....+..
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~-~~~~~i~~   91 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGID-VIRNKIKE   91 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchH-HHHHHHHH
Confidence            568999999999999987643  245799999999999999999988643321111111 00 01111111 11111111


Q ss_pred             HhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-cCCCceE
Q 017364          165 LLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLMA-HGVDEVY  240 (373)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~-~~~~~~~  240 (373)
                      +....+               .....+-++++|+++..  .....+...+......+.+|+++.... .... ......+
T Consensus        92 ~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~  156 (319)
T PRK00440         92 FARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF  156 (319)
T ss_pred             HHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence            110000               00123568999998643  223333333322234566777665432 1111 1123468


Q ss_pred             eCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          241 MHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       241 ~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .+.+++.++...++...+......  ..++.+..+++.++|.+.-+....
T Consensus       157 ~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~~~l  204 (319)
T PRK00440        157 RFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAINAL  204 (319)
T ss_pred             eeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            899999999999988776432221  335678899999999987754443

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.01  E-value=1e-07  Score=90.69  Aligned_cols=195  Identities=15%  Similarity=0.138  Sum_probs=111.5

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEeec-hhhhc--ccCHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--FEASCFLANV-REISK--KSGLVFLQ  158 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~-~~~~~--~~~~~~~~  158 (373)
                      -..++|-+...+.|...+..+. -...+.++|++|+||||+|+.++..+...  ++..++.+.. .....  ..++..  
T Consensus        13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e--   89 (504)
T PRK14963         13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE--   89 (504)
T ss_pred             HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE--
Confidence            3568999999999988888652 24567999999999999999999886432  2223332210 00000  000000  


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHH-hhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhc
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRS-RLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLMAH  234 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~  234 (373)
                            +..........+.++...+.. -+.+++-++|+|+++..  ..+..++..+......+.+|+++... .+....
T Consensus        90 ------l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I  163 (504)
T PRK14963         90 ------IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI  163 (504)
T ss_pred             ------ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence                  000000000111111111111 12345668999998743  44666665554334455666666543 222211


Q ss_pred             -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                       .....+.+.+++.++...++...+......  ...+.+..|++.++|.+.-+...
T Consensus       164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~aln~  217 (504)
T PRK14963        164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAESL  217 (504)
T ss_pred             hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence             234579999999999999998876432222  23567889999999999766433

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.01  E-value=1.3e-07  Score=86.33  Aligned_cols=198  Identities=14%  Similarity=0.055  Sum_probs=112.0

Q ss_pred             cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cceEE-E--eechhhhcccCHH
Q 017364           81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EASCF-L--ANVREISKKSGLV  155 (373)
Q Consensus        81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~-~--~~~~~~~~~~~~~  155 (373)
                      |.....++|.+...+.+.+.+..+. -...+.++|+.|+||+|+|..+++.+-.+-  ..... .  ... ......   
T Consensus        15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~~~~~c---   89 (365)
T PRK07471         15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-AIDPDH---   89 (365)
T ss_pred             CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-cCCCCC---
Confidence            3445679999999999999988652 245689999999999999999999764221  10000 0  000 000000   


Q ss_pred             HHHHHHHHHH------hC----CCC---CCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCC
Q 017364          156 FLQKQLISQL------LN----LPD---SGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWF  215 (373)
Q Consensus       156 ~~~~~~~~~~------~~----~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~  215 (373)
                      ...+.+....      +.    ...   ...-.+++ +..+.+.+     .+++-++|+|+++.  ......++..+...
T Consensus        90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEep  168 (365)
T PRK07471         90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEP  168 (365)
T ss_pred             hHHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcC
Confidence            0001110000      00    000   00011222 22233333     34567999999863  44445555444333


Q ss_pred             CCCcEEEEEeCChhhH-hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          216 GIGSRIFITSRDKHLL-MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       216 ~~g~~iliTtR~~~~~-~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ..++.+|++|++.... .. ......+.+.+++.++..+++......   .  . .+....++..++|+|+....+.
T Consensus       169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~--~-~~~~~~l~~~s~Gsp~~Al~ll  239 (365)
T PRK07471        169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L--P-DDPRAALAALAEGSVGRALRLA  239 (365)
T ss_pred             CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C--C-HHHHHHHHHHcCCCHHHHHHHh
Confidence            3466677777776432 22 223468999999999999999876421   1  1 1223678999999998665543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.99  E-value=1e-07  Score=91.38  Aligned_cols=195  Identities=17%  Similarity=0.157  Sum_probs=111.2

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..+||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+.....    ...     ...+.....+.+.
T Consensus        13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~~-----~pCg~C~sC~~I~   82 (702)
T PRK14960         13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VTS-----TPCEVCATCKAVN   82 (702)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CCC-----CCCccCHHHHHHh
Confidence            34579999999999999998652 2467899999999999999999987643211    000     0000000000000


Q ss_pred             HH----HhCCCCCCCcchhhhHHHHHH----hhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-
Q 017364          163 SQ----LLNLPDSGVWNVYDGMNMIRS----RLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL-  231 (373)
Q Consensus       163 ~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~-  231 (373)
                      ..    +...........+.....+..    -..++.-++|+|+++..  .....++..+.....+..+|++|.+..-. 
T Consensus        83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp  162 (702)
T PRK14960         83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP  162 (702)
T ss_pred             cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence            00    000000000111111111111    11345668999999743  34555554443333466788877764321 


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      .. ......+++.+++.++....+...+.....  ....+....|++.++|.+..+..+
T Consensus       163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdALnL  219 (702)
T PRK14960        163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDALSL  219 (702)
T ss_pred             HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence            11 123467899999999999998877643222  233566888999999988555433

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.99  E-value=1e-07  Score=94.20  Aligned_cols=198  Identities=16%  Similarity=0.122  Sum_probs=112.5

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEee-chhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLAN-VREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~-~~~~~~~~~~~~~~  158 (373)
                      .-..+||.+..++.|.+.+..+. =...+.++|+.|+||||+|+.+++.+.....   ..|..+. +..+...... .  
T Consensus        14 tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~-D--   89 (944)
T PRK14949         14 TFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV-D--   89 (944)
T ss_pred             CHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc-e--
Confidence            34579999999999999887542 2355689999999999999999998653211   0010000 0000000000 0  


Q ss_pred             HHHHHHHhCCC-CCCCcchhhhHHHHHH-hhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh
Q 017364          159 KQLISQLLNLP-DSGVWNVYDGMNMIRS-RLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMA  233 (373)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~  233 (373)
                         +.. +... ......++.+...+.. -..++.-++|||+++.  ......|+..+.......++|++|.+.. +...
T Consensus        90 ---viE-idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T  165 (944)
T PRK14949         90 ---LIE-VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT  165 (944)
T ss_pred             ---EEE-eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence               000 0000 0001111222222211 1245667999999964  4456666655543344666776665543 3222


Q ss_pred             c-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          234 H-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       234 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      + .....+.+.+|+.++...++...+....  .....+.+..|++.++|.|.-+..+.
T Consensus       166 IlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnLL  221 (944)
T PRK14949        166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSLT  221 (944)
T ss_pred             HHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            1 1236899999999999999887663322  12345678889999999887554443

>PLN03194 putative disease resistance protein; Provisional

Probab=98.99  E-value=3.5e-10  Score=90.42  Aligned_cols=64  Identities=19%  Similarity=0.352  Sum_probs=52.8

Q ss_pred             CEEeeeecccccccccc-cchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCC--CCChhHHHhhhhhcccccc
Q 017364            1 MIFPIFYDLEPTTVRKQ-TASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELK--DRNEPEFIVDIVKEISCKI   77 (373)
Q Consensus         1 ~v~p~~~~v~~~~v~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~   77 (373)
                      +|+||||+|+|+|||+| .|.+             ..+++++|++||+++++++|+...  ..++.++++.|+..|...+
T Consensus       111 ~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l  177 (187)
T PLN03194        111 RVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNL  177 (187)
T ss_pred             EEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence            48999999999999997 4432             235799999999999999998654  4679999999988776654

>PLN03025 replication factor C subunit; Provisional

Probab=98.99  E-value=5.8e-08  Score=87.81  Aligned_cols=186  Identities=13%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      .-..++|.++.++.+..++..+.  .+.+.++|++|+||||+|..+++.+.. .+...+.-.+.   +...+.. ..+..
T Consensus        11 ~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~~~~~-~vr~~   84 (319)
T PLN03025         11 KLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDDRGID-VVRNK   84 (319)
T ss_pred             CHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cccccHH-HHHHH
Confidence            33568999988888888877543  355789999999999999999988632 22221111111   1111111 11222


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCC
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVD  237 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~  237 (373)
                      +..+......              ...++.-++++|+++...  .-..+..........+++++++.... +...+ ...
T Consensus        85 i~~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc  150 (319)
T PLN03025         85 IKMFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC  150 (319)
T ss_pred             HHHHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence            1111000000              002345689999997432  22223222222234566777665432 11111 122


Q ss_pred             ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       238 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ..+++.+++.++....+...+......  ...+....|++.++|....+....
T Consensus       151 ~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~aln~L  201 (319)
T PLN03025        151 AIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQALNNL  201 (319)
T ss_pred             hcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            478999999999999988776432222  224568889999999875554433

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.98  E-value=3.6e-09  Score=87.93  Aligned_cols=50  Identities=30%  Similarity=0.515  Sum_probs=35.7

Q ss_pred             CcccchhhHHHHHHHHh-cCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           86 ELVGLDSRLEKLRFLIN-KGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .|+||+.+++.+...+. ......+.+.|+|++|+|||+|++.++..+...
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            48999999999999994 223346899999999999999999999988776

>PRK04195 replication factor C large subunit; Provisional

Probab=98.97  E-value=4.2e-08  Score=93.69  Aligned_cols=212  Identities=17%  Similarity=0.175  Sum_probs=120.0

Q ss_pred             ccCcccchhhHHHHHHHHhcCC--CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGP--TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ...++|.+..++.+..++....  ...+.+.|+|++|+||||+|+.+++.+.  +....+  +.   +.... ......+
T Consensus        13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~iel--na---sd~r~-~~~i~~~   84 (482)
T PRK04195         13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIEL--NA---SDQRT-ADVIERV   84 (482)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEE--cc---ccccc-HHHHHHH
Confidence            4569999999999998887422  1157899999999999999999999763  222222  11   11111 1122222


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH------HHHHHhcCCCCCCCCcEEEEEeCChhhH-h-h
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ------QLESLAGKHDWFGIGSRIFITSRDKHLL-M-A  233 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~l~~l~~~~~~~~~g~~iliTtR~~~~~-~-~  233 (373)
                      ........               ..+..++-+||||+++...      .+..+...+.  ..+..+|+++.+..-. . .
T Consensus        85 i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~  147 (482)
T PRK04195         85 AGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE  147 (482)
T ss_pred             HHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence            22211110               0011356799999997532      2334433322  1233466666543211 1 1


Q ss_pred             -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC-C---CHHHHHHHHHHh
Q 017364          234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG-R---TIAEWESALQRL  308 (373)
Q Consensus       234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~---~~~~~~~~l~~l  308 (373)
                       -.....+.+.+++..+....+...+......  ...+....|++.++|....+......+.. .   +.......   .
T Consensus       148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~---~  222 (482)
T PRK04195        148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL---G  222 (482)
T ss_pred             HhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh---h
Confidence             1234578999999999999888776432222  23567899999999987766554444432 2   12222222   1


Q ss_pred             cCCCCchHHHHHHhchh
Q 017364          309 ERDPENEILDVLQISFD  325 (373)
Q Consensus       309 ~~~~~~~i~~~l~~s~~  325 (373)
                      ......+++.++...+.
T Consensus       223 ~~d~~~~if~~l~~i~~  239 (482)
T PRK04195        223 RRDREESIFDALDAVFK  239 (482)
T ss_pred             cCCCCCCHHHHHHHHHC
Confidence            13344556666665554

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=1.1e-07  Score=91.05  Aligned_cols=199  Identities=11%  Similarity=0.075  Sum_probs=112.0

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-EEEeechhhhcccCHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-CFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      .-..+||-+..++.|.+.+..+. -.+.+.++|+.|+||||+|+.+++.+....... .-..     ....+.......+
T Consensus        14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~I   87 (700)
T PRK12323         14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTEI   87 (700)
T ss_pred             cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHHH
Confidence            34579999999999999998652 235678999999999999999999765321000 0000     0000000000000


Q ss_pred             HH----HHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-h
Q 017364          162 IS----QLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-L  230 (373)
Q Consensus       162 ~~----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~  230 (373)
                      ..    .++.........+++..+.+...    ..++.-++|||+++.  ....+.|+..+.....++.+|++|.+.. +
T Consensus        88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL  167 (700)
T PRK12323         88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI  167 (700)
T ss_pred             HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence            00    00000000011122222222111    134566999999974  3456667666654445667776666543 3


Q ss_pred             Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      ...+ .-...+.+.+++.++..+.+.+.+......  ...+....|++.++|.|.-...+
T Consensus       168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALsL  225 (700)
T PRK12323        168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALSL  225 (700)
T ss_pred             hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            2221 123578999999999999888765332211  22455788999999999654443

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.94  E-value=1.5e-07  Score=80.04  Aligned_cols=184  Identities=17%  Similarity=0.150  Sum_probs=99.7

Q ss_pred             cCcccchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc--ceEEEeechhhhcccCHHHHHHH
Q 017364           85 KELVGLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE--ASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        85 ~~~vGR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ..++|-..+  ...+.............+.|+|+.|+|||.|+..+++.+....+  .++++. ..         .+...
T Consensus         9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~~---------~f~~~   78 (219)
T PF00308_consen    9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-AE---------EFIRE   78 (219)
T ss_dssp             CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-HH---------HHHHH
T ss_pred             cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-HH---------HHHHH
Confidence            344575443  33333333332223456889999999999999999998765433  233332 21         22222


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh----
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH----  229 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~----  229 (373)
                      +...+..          .....++..+.+ -=+|++||++...       .+-.+...+.  ..|.++|+|++...    
T Consensus        79 ~~~~~~~----------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~  145 (219)
T PF00308_consen   79 FADALRD----------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELS  145 (219)
T ss_dssp             HHHHHHT----------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTT
T ss_pred             HHHHHHc----------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCcccc
Confidence            2222211          112334444443 3478899996421       1222222221  23667999996542    


Q ss_pred             -----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          230 -----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       230 -----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                           +...+...-.+++.+++.++..+++.+.+......  -.+++++-|++.+.+..-.|..+...+
T Consensus       146 ~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l  212 (219)
T PF00308_consen  146 GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL  212 (219)
T ss_dssp             TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred             ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence                 23334456689999999999999998887443322  345677788888777776666554443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.94  E-value=2.9e-07  Score=86.87  Aligned_cols=197  Identities=16%  Similarity=0.103  Sum_probs=106.7

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..+||.+...+.+...+..+. -++.+.++||+|+||||+|+.++..+...-..  .+..+       ........+.
T Consensus        12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~--~~~pc-------~~c~~c~~i~   81 (472)
T PRK14962         12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRK--GVEPC-------NECRACRSID   81 (472)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC--CCCCC-------cccHHHHHHh
Confidence            34579999988888888887552 23568899999999999999999876432100  00000       0000000000


Q ss_pred             HH----HhCCCCCCCcchhhhHHHHHHh-----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hh
Q 017364          163 SQ----LLNLPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HL  230 (373)
Q Consensus       163 ~~----~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~  230 (373)
                      ..    ............+.. ..+.+.     +.+++-++|+|+++..  .....++..+........+|++|.+. .+
T Consensus        82 ~g~~~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl  160 (472)
T PRK14962         82 EGTFMDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV  160 (472)
T ss_pred             cCCCCccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence            00    000000000011111 111111     2345679999999754  33455555544333345555555443 22


Q ss_pred             Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHH
Q 017364          231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSF  292 (373)
Q Consensus       231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~  292 (373)
                      .... .....+.+.+++.++....+...+.....  ...++....|++.++|. +.++..+-..
T Consensus       161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~l  222 (472)
T PRK14962        161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQV  222 (472)
T ss_pred             hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            2221 23457899999999999998877633221  13356678899888655 5666666543

>PRK08727 hypothetical protein; Validated

Probab=98.94  E-value=5.1e-08  Score=83.89  Aligned_cols=170  Identities=15%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             cCcccchh-hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           85 KELVGLDS-RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        85 ~~~vGR~~-~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      ++|++... .+..+.......  ....+.|+|++|+|||+|+..+++........+.|+. ...         ....+. 
T Consensus        19 ~~f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~-   85 (233)
T PRK08727         19 DSYIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR-   85 (233)
T ss_pred             hhccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH-
Confidence            34555443 344443333221  2256999999999999999999998766554555553 111         000000 


Q ss_pred             HHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh-------
Q 017364          164 QLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH-------  229 (373)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~-------  229 (373)
                                       ..+. .+ .+.-+||+||++...       .+-.+.....  ..+..+|+|++...       
T Consensus        86 -----------------~~~~-~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~--~~~~~vI~ts~~~p~~l~~~~  144 (233)
T PRK08727         86 -----------------DALE-AL-EGRSLVALDGLESIAGQREDEVALFDFHNRAR--AAGITLLYTARQMPDGLALVL  144 (233)
T ss_pred             -----------------HHHH-HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHH--HcCCeEEEECCCChhhhhhhh
Confidence                             0011 11 223589999986321       1222222211  23556999998542       


Q ss_pred             --hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          230 --LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       230 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                        +...+.....+.+++++.++-.+++.+++.....  ....+...-|++.++|-.-.+..+-
T Consensus       145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l~~L  205 (233)
T PRK08727        145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLVALL  205 (233)
T ss_pred             HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHH
Confidence              2223334568899999999999999986643222  2335667788888876665553333

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.9e-07  Score=85.17  Aligned_cols=253  Identities=17%  Similarity=0.133  Sum_probs=144.9

Q ss_pred             ccccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-EEEeechhhhcccCHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-CFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~  158 (373)
                      ..|..+.+|+.+++++...|.+-  ...+..+.|+|++|+|||+.++.+++++....... +.+.++   ........+.
T Consensus        14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc---~~~~t~~~i~   90 (366)
T COG1474          14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC---LELRTPYQVL   90 (366)
T ss_pred             CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee---eeCCCHHHHH
Confidence            34456999999999999888742  12234599999999999999999999987664433 333333   3345666777


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----HHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----QLESLAGKHDWFGIGSRIFITSRDKHLL  231 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----~l~~l~~~~~~~~~g~~iliTtR~~~~~  231 (373)
                      ..++..+... +....+..+....+.+.+  .++.+++|||+++...     .+-.+............+|..+.+..+.
T Consensus        91 ~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~  169 (366)
T COG1474          91 SKILNKLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL  169 (366)
T ss_pred             HHHHHHcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence            7777776532 333344555566666665  4578999999986432     3334433332221222344455554332


Q ss_pred             h--------hcCCCceEeCCCCCHhHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHH--hcC--
Q 017364          232 M--------AHGVDEVYMHEHLNYDEALGLFCLKA---FKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSF--LFG--  295 (373)
Q Consensus       232 ~--------~~~~~~~~~l~~L~~~ea~~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~--l~~--  295 (373)
                      .        .++ ...+..+|-+.+|-.+.+..++   +......+..-+.+-.++..-+|- -.||..+-..  +..  
T Consensus       170 ~~ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~  248 (366)
T COG1474         170 DYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAERE  248 (366)
T ss_pred             HHhhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhh
Confidence            2        222 2347889999999999998776   333333334444455555555542 2333333211  111  


Q ss_pred             -C---CHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccCCCCC
Q 017364          296 -R---TIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFYKGKY  346 (373)
Q Consensus       296 -~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~  346 (373)
                       .   +.+.-..+...       --...+...++.||.+++-.+..++....+++
T Consensus       249 ~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~  296 (366)
T COG1474         249 GSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEIS  296 (366)
T ss_pred             CCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Confidence             0   11111111111       11224444578888888877766665533333

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.90  E-value=1.4e-07  Score=85.66  Aligned_cols=197  Identities=13%  Similarity=0.059  Sum_probs=112.6

Q ss_pred             cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc----cceEEEeechhhhcccCHHH
Q 017364           81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF----EASCFLANVREISKKSGLVF  156 (373)
Q Consensus        81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~  156 (373)
                      |.....++|-+...+.+...+..+. .+..+.|+|+.|+||||+|..++..+-..-    ......       .......
T Consensus        19 P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~   90 (351)
T PRK09112         19 PSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASP   90 (351)
T ss_pred             CCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCH
Confidence            4455679999999999999998662 345799999999999999999999865421    111000       0000001


Q ss_pred             HHHHHHHH-------HhC---CCC---CCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCC
Q 017364          157 LQKQLISQ-------LLN---LPD---SGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFG  216 (373)
Q Consensus       157 ~~~~~~~~-------~~~---~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~  216 (373)
                      ....+...       +..   ...   ...-.+++ +..+.+.+     .++.-++|+|+++.  ....+.++..+....
T Consensus        91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp  169 (351)
T PRK09112         91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP  169 (351)
T ss_pred             HHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence            11111100       000   000   01111222 22333333     34567899999974  333444444443323


Q ss_pred             CCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          217 IGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       217 ~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .++.+|++|.+.. +.... .....+.+.+++.++..+++........    ...+....+++.++|.|.....+.
T Consensus       170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll  241 (351)
T PRK09112        170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL  241 (351)
T ss_pred             CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4555555555442 22221 1235899999999999999987432111    224457889999999998665544

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.90  E-value=1.7e-08  Score=78.79  Aligned_cols=113  Identities=20%  Similarity=0.230  Sum_probs=71.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc-----ccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE-----FEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNM  182 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (373)
                      .+.+.|+|++|+|||++++.++..+...     ....+|+.    .........+...++..+...... ..+.......
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~   78 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL   78 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence            3789999999999999999999987543     23444554    233336777777877776544333 3455666677


Q ss_pred             HHHhhCCCc-eEEEecccccH---HHHHHHhcCCCCCCCCcEEEEEeCC
Q 017364          183 IRSRLRHKK-VLLVIDDVIEL---QQLESLAGKHDWFGIGSRIFITSRD  227 (373)
Q Consensus       183 l~~~l~~~~-~LlvlDdv~~~---~~l~~l~~~~~~~~~g~~iliTtR~  227 (373)
                      +.+.+...+ .+||+|+++..   ..++.+.....  ..+..+|++.+.
T Consensus        79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            777775544 59999999765   23444433323  456778887775

>PF13173 AAA_14: AAA domain

Probab=98.89  E-value=8.5e-09  Score=80.10  Aligned_cols=119  Identities=19%  Similarity=0.164  Sum_probs=73.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      ++++|.|+.|+|||||++++++... ....++++. ......    .....                .+ ....+.+...
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~----~~~~~----------------~~-~~~~~~~~~~   59 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD----RRLAD----------------PD-LLEYFLELIK   59 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH----HHHhh----------------hh-hHHHHHHhhc
Confidence            6899999999999999999998766 223344442 211110    00000                00 1122333333


Q ss_pred             CCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc------CCCceEeCCCCCHhHH
Q 017364          189 HKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH------GVDEVYMHEHLNYDEA  250 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~------~~~~~~~l~~L~~~ea  250 (373)
                      +++.+++||++.....|...+..+-...++.+|++|+.+.......      +....+.+.||+..|-
T Consensus        60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~  127 (128)
T PF13173_consen   60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF  127 (128)
T ss_pred             cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence            4678899999987777666655554334567899999987655321      1224678999998874

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.89  E-value=3.9e-08  Score=78.15  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=69.7

Q ss_pred             ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhC
Q 017364           88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLN  167 (373)
Q Consensus        88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (373)
                      +|++.++..+...+....  .+.+.|+|++|+|||+|++.+++.+......++++. .........   ... .... . 
T Consensus         1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~---~~~-~~~~-~-   71 (151)
T cd00009           1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLV---VAE-LFGH-F-   71 (151)
T ss_pred             CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhH---HHH-Hhhh-h-
Confidence            478888888888887532  278999999999999999999998754333344432 221111100   000 0000 0 


Q ss_pred             CCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-----HHHHHHhcCCCCC---CCCcEEEEEeCChh
Q 017364          168 LPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-----QQLESLAGKHDWF---GIGSRIFITSRDKH  229 (373)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----~~l~~l~~~~~~~---~~g~~iliTtR~~~  229 (373)
                                ............++.++++||++..     ..+...+......   ..+..+|+|+....
T Consensus        72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                      0011111222456789999999743     2233333333221   34677888888653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF14516 AAA_35: AAA-like domain

Probab=98.89  E-value=8e-07  Score=80.60  Aligned_cols=204  Identities=13%  Similarity=0.143  Sum_probs=116.9

Q ss_pred             ccccCcccchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc--ccCHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK--KSGLVFLQ  158 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~  158 (373)
                      ...+.+|.|...-+.+...+.. |    ..+.|.|+..+|||||+..+.+........++++ ++.....  ......+.
T Consensus         8 ~~~~~Yi~R~~~e~~~~~~i~~~G----~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~   82 (331)
T PF14516_consen    8 LDSPFYIERPPAEQECYQEIVQPG----SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFL   82 (331)
T ss_pred             CCCCcccCchHHHHHHHHHHhcCC----CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHH
Confidence            4456789999666666666654 6    7899999999999999999999887553344444 3332222  23344444


Q ss_pred             HHHHHHHh---CCCCC-------CCcchhhhHHHHHHhh---CCCceEEEecccccHHH----HHHHhcCC-------CC
Q 017364          159 KQLISQLL---NLPDS-------GVWNVYDGMNMIRSRL---RHKKVLLVIDDVIELQQ----LESLAGKH-------DW  214 (373)
Q Consensus       159 ~~~~~~~~---~~~~~-------~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~----l~~l~~~~-------~~  214 (373)
                      ..++..+.   +....       ...+.......+.+.+   .+++.+|+||+++..-.    ..++...+       ..
T Consensus        83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~  162 (331)
T PF14516_consen   83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN  162 (331)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence            44433332   21110       0111122223333332   36899999999874321    11222111       10


Q ss_pred             C-CCC-cEEE-EEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          215 F-GIG-SRIF-ITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       215 ~-~~g-~~il-iTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      . ... -+++ +.+........     ......+.|++++.+|...|+......   .   .....++|...+||+|..+
T Consensus       163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~---~~~~~~~l~~~tgGhP~Lv  236 (331)
T PF14516_consen  163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F---SQEQLEQLMDWTGGHPYLV  236 (331)
T ss_pred             CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C---CHHHHHHHHHHHCCCHHHH
Confidence            0 011 1222 22211111111     123357889999999999998876422   1   1233899999999999999


Q ss_pred             HHHHHHhcCC
Q 017364          287 KVLGSFLFGR  296 (373)
Q Consensus       287 ~~~~~~l~~~  296 (373)
                      ..++..+...
T Consensus       237 ~~~~~~l~~~  246 (331)
T PF14516_consen  237 QKACYLLVEE  246 (331)
T ss_pred             HHHHHHHHHc
Confidence            9999999653

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.89  E-value=7.1e-07  Score=82.31  Aligned_cols=196  Identities=13%  Similarity=0.145  Sum_probs=108.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhhhc--ccCHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREISK--KSGLVF  156 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~--~~~~~~  156 (373)
                      -..++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.++..+.....     +..... +..+..  ..++..
T Consensus        13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~-c~~~~~~~~~~~~~   90 (355)
T TIGR02397        13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES-CKEINSGSSLDVIE   90 (355)
T ss_pred             HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHhcCCCCCEEE
Confidence            3568999999999999887552 2467889999999999999999987642210     000000 000000  000000


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLM  232 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~  232 (373)
                      +        .+........+..+...+... +.+++-++|+|+++..  .....+...+......+.+|++|.+.. +..
T Consensus        91 ~--------~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~  162 (355)
T TIGR02397        91 I--------DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPA  162 (355)
T ss_pred             e--------eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHH
Confidence            0        000000000111111111111 1344558899998643  344555544433334566667765553 222


Q ss_pred             hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      .. .....+++.+++.++..+++...+-.....  ..++.+..+++.++|.|..+.....
T Consensus       163 ~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~le  220 (355)
T TIGR02397       163 TILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLLD  220 (355)
T ss_pred             HHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHHH
Confidence            21 123578899999999999988766332221  2346788899999999976655543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.88  E-value=5.3e-07  Score=87.26  Aligned_cols=197  Identities=13%  Similarity=0.117  Sum_probs=110.2

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEeechhhhcccCHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLANVREISKKSGLVFLQK  159 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~  159 (373)
                      .-..+||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.++..+...-.   ...-..       ..+......
T Consensus        14 ~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~-------pCg~C~~C~   85 (618)
T PRK14951         14 SFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT-------PCGVCQACR   85 (618)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC-------CCCccHHHH
Confidence            34579998888999999988652 2466799999999999999999987642110   000000       000000000


Q ss_pred             HHHHH----HhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-
Q 017364          160 QLISQ----LLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-  228 (373)
Q Consensus       160 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-  228 (373)
                      .+...    +..........+++..+.+...    ..++.-++|||+++.  ......++..+......+.+|++|.+. 
T Consensus        86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~  165 (618)
T PRK14951         86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ  165 (618)
T ss_pred             HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence            11000    0000000001122221111111    123455899999974  445566666554434466676666543 


Q ss_pred             hhHhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          229 HLLMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       229 ~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      .+... ......+.+.+++.++....+...+......  ...+....|++.++|.+.-+..+
T Consensus       166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~l  225 (618)
T PRK14951        166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALSL  225 (618)
T ss_pred             hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            32222 2234679999999999999988766432222  23456788999999988655444

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.87  E-value=1.7e-07  Score=86.41  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=103.3

Q ss_pred             cCcccchhhHHHHHHHHhcCCC--------CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPT--------DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF  156 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  156 (373)
                      ..++|-+..++.+...+..+..        -++.+.++||+|+|||++|+.++..+-.....  . ..+..       ..
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~-~~Cg~-------C~   74 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--E-PGCGE-------CR   74 (394)
T ss_pred             hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--C-CCCCC-------CH
Confidence            4588989889999999886531        24678999999999999999999875432210  0 00000       00


Q ss_pred             HHHHHHHHH-----hCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEE
Q 017364          157 LQKQLISQL-----LNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFIT  224 (373)
Q Consensus       157 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliT  224 (373)
                      ....+....     .-.+......+++. ..+.+.+     .+++-++|+|+++..  .....++..+....+++.+|++
T Consensus        75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~  153 (394)
T PRK07940         75 ACRTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC  153 (394)
T ss_pred             HHHHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence            000000000     00000000111111 1122211     244558888999743  3334444444333446667776


Q ss_pred             eCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364          225 SRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK  287 (373)
Q Consensus       225 tR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~  287 (373)
                      |.+.. +...+ .....+.+.+++.++..+.+.....       ...+.+..++..++|.|....
T Consensus       154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-------~~~~~a~~la~~s~G~~~~A~  211 (394)
T PRK07940        154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-------VDPETARRAARASQGHIGRAR  211 (394)
T ss_pred             ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHH
Confidence            66653 33222 2246889999999999988874431       113457788999999997443

>PRK05642 DNA replication initiation factor; Validated

Probab=98.87  E-value=1.5e-07  Score=81.06  Aligned_cols=151  Identities=17%  Similarity=0.191  Sum_probs=91.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      +.+.|+|++|+|||+|+..+++.+......++|+. ...+.         ..                   ...+.+.+.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~---------~~-------------------~~~~~~~~~   96 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELL---------DR-------------------GPELLDNLE   96 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHH---------hh-------------------hHHHHHhhh
Confidence            56899999999999999999987765544555553 11110         00                   011222222


Q ss_pred             CCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeCChhh---------HhhcCCCceEeCCCCCHhHHHH
Q 017364          189 HKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSRDKHL---------LMAHGVDEVYMHEHLNYDEALG  252 (373)
Q Consensus       189 ~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR~~~~---------~~~~~~~~~~~l~~L~~~ea~~  252 (373)
                      +- -+|++||+...       +.+-.+.....  ..|..+|+|++....         ...+.....+.+.+++.++-..
T Consensus        97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~  173 (234)
T PRK05642         97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR  173 (234)
T ss_pred             hC-CEEEEechhhhcCChHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence            22 26889999522       12333333222  236678888875421         2223344678899999999999


Q ss_pred             HHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          253 LFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       253 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      .+..++.....  ...+++.+-|++.+.|..-.+..+-..|
T Consensus       174 il~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~~~l~~l  212 (234)
T PRK05642        174 ALQLRASRRGL--HLTDEVGHFILTRGTRSMSALFDLLERL  212 (234)
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            99855533221  1235677888888888776666665554

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.86  E-value=2.8e-07  Score=85.82  Aligned_cols=198  Identities=13%  Similarity=0.110  Sum_probs=110.6

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEee-chhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLAN-VREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~-~~~~~~~~~~~~~~  158 (373)
                      .-..+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+....+.   .+..+. +..+......    
T Consensus        16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~----   90 (484)
T PRK14956         16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISS----   90 (484)
T ss_pred             CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCc----
Confidence            34579999999999999888653 23568999999999999999999976532110   000000 0000000000    


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhc
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLLMAH  234 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~  234 (373)
                       .++ .+-........++.++...+... ..++.-++|+|+++.  ...+..++..+........+|++|.+. .+...+
T Consensus        91 -dvi-EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI  168 (484)
T PRK14956         91 -DVL-EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI  168 (484)
T ss_pred             -cce-eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence             000 00000000011122222222211 235567999999974  445666665554333455555555543 332222


Q ss_pred             -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                       .....|.+.+++.++..+.+...+.....  ....+....|++.++|.+.-.-.+
T Consensus       169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~RdAL~l  222 (484)
T PRK14956        169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRDMLSF  222 (484)
T ss_pred             HhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHHHHHH
Confidence             12356899999999999988877633221  234567889999999998544333

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.85  E-value=6.1e-07  Score=84.47  Aligned_cols=194  Identities=15%  Similarity=0.120  Sum_probs=108.9

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..+||.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+....+...         ...+.......+.
T Consensus        11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~---------~pCg~C~~C~~i~   80 (491)
T PRK14964         11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTS---------DPCGTCHNCISIK   80 (491)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC---------CCccccHHHHHHh
Confidence            34579999999999988887652 2357899999999999999999986532211100         0000000000000


Q ss_pred             HHH----hCCCCCCCcchhh---hHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364          163 SQL----LNLPDSGVWNVYD---GMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLL  231 (373)
Q Consensus       163 ~~~----~~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~  231 (373)
                      ...    ...........++   .+...... +.++.-++|+|+++.  ....+.++..+....+.+.+|++|.+. .+.
T Consensus        81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~  160 (491)
T PRK14964         81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP  160 (491)
T ss_pred             ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence            000    0000000011111   11111111 134556899999864  334555555554444567677666543 332


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV  288 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~  288 (373)
                      .. ......+.+.+++.++....+...+......  ...+....|++.++|.+..+..
T Consensus       161 ~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~als  216 (491)
T PRK14964        161 VTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNALF  216 (491)
T ss_pred             HHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence            22 1234678999999999999988876433222  3356688899999998864433

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.85  E-value=8.9e-07  Score=84.01  Aligned_cols=195  Identities=14%  Similarity=0.141  Sum_probs=109.6

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc-------eEEEe-echhhhcc--c
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA-------SCFLA-NVREISKK--S  152 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-------~~~~~-~~~~~~~~--~  152 (373)
                      .-..++|-+..++.+...+..+. -.+.+.++|++|+||||+|+.++..+......       .+..+ .+..+...  .
T Consensus        19 ~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~   97 (507)
T PRK06645         19 NFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP   97 (507)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence            34568999999999988887652 24678999999999999999999976432110       00000 00000000  0


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEe-CCh
Q 017364          153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITS-RDK  228 (373)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTt-R~~  228 (373)
                      +...        +.........++...+...... +.+++-++|+|+++.  ...+..++..+....+.+.+|++| +..
T Consensus        98 Dv~e--------idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~  169 (507)
T PRK06645         98 DIIE--------IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ  169 (507)
T ss_pred             cEEE--------eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence            0000        0000000011111111111111 234567899999975  344666665554334466666544 433


Q ss_pred             hhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364          229 HLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV  288 (373)
Q Consensus       229 ~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~  288 (373)
                      .+.... .....+++.+++.++....+...+......  ...+....|++.++|.+.-+..
T Consensus       170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~al~  228 (507)
T PRK06645        170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDAVS  228 (507)
T ss_pred             HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence            333222 233578999999999999998877433222  2345678899999998865533

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.85  E-value=3.7e-07  Score=78.66  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=99.4

Q ss_pred             Ccccch-hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH
Q 017364           86 ELVGLD-SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ  164 (373)
Q Consensus        86 ~~vGR~-~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (373)
                      .++|-. ..+..+..+....  ..+.+.|+|++|+|||+|+..+++........+.++. .....      .....    
T Consensus        24 f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~------~~~~~----   90 (235)
T PRK08084         24 FYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA------WFVPE----   90 (235)
T ss_pred             cccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh------hhhHH----
Confidence            344622 2355555544332  2367899999999999999999987765433444443 11100      00000    


Q ss_pred             HhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH---HH----HHHHhcCCCCCCCCcEEEEEeCChh--------
Q 017364          165 LLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL---QQ----LESLAGKHDWFGIGSRIFITSRDKH--------  229 (373)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~----l~~l~~~~~~~~~g~~iliTtR~~~--------  229 (373)
                                    .    .+.+.. .-+|++||++..   ..    +-.+...... ..+.++|+||+...        
T Consensus        91 --------------~----~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~  150 (235)
T PRK08084         91 --------------V----LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLP  150 (235)
T ss_pred             --------------H----HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccH
Confidence                          1    111111 247899999642   11    2222222111 11246899988653        


Q ss_pred             -hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          230 -LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       230 -~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                       +...+.....+.+.+++.++-.+++.+++....  ..-.+++.+-|++.+.|..-.+..+-..+
T Consensus       151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l  213 (235)
T PRK08084        151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL  213 (235)
T ss_pred             HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence             233344557899999999999999887553322  12345678888888888777666555544

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.85  E-value=4.1e-07  Score=89.91  Aligned_cols=175  Identities=23%  Similarity=0.259  Sum_probs=101.4

Q ss_pred             ccCcccchhhHH---HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           84 LKELVGLDSRLE---KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        84 ~~~~vGR~~~~~---~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      -..|+|.+..+.   .+...+..+  ..+.+.|+|++|+||||||+.+++.....|.   .+. .  .  ......    
T Consensus        27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-a--~--~~~i~d----   92 (725)
T PRK13341         27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-A--V--LAGVKD----   92 (725)
T ss_pred             HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-h--h--hhhhHH----
Confidence            356899988774   566666644  3467889999999999999999987654431   111 0  0  000000    


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEE--eCChhh--Hh
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFIT--SRDKHL--LM  232 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliT--tR~~~~--~~  232 (373)
                                     ...........+  .+++.+|+|||++.  ....+.+.....   .+..++++  |.+...  ..
T Consensus        93 ---------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~  154 (725)
T PRK13341         93 ---------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK  154 (725)
T ss_pred             ---------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence                           011111111111  24567999999974  344455554433   34545543  344321  11


Q ss_pred             hc-CCCceEeCCCCCHhHHHHHHHHhhcC-----CCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          233 AH-GVDEVYMHEHLNYDEALGLFCLKAFK-----SHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .. .....+.+++|+.++...++...+..     .........+....|++.+.|+...+.-+.
T Consensus       155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~L  218 (725)
T PRK13341        155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNAL  218 (725)
T ss_pred             HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence            11 12357899999999999999876531     011122345678889999999866554443

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.85  E-value=5.5e-07  Score=81.32  Aligned_cols=176  Identities=16%  Similarity=0.176  Sum_probs=107.3

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-----ccceEEEeechhhhcccCHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-----FEASCFLANVREISKKSGLVFLQK  159 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~  159 (373)
                      ..++|-+...+.+...+..+ .-.+...++|+.|+||||+|+.+++.+...     ++....+...  ......... .+
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir   79 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR   79 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence            35789888889999888754 224678899999999999999999976322     2222222100  000111111 12


Q ss_pred             HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cC
Q 017364          160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HG  235 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~  235 (373)
                      .+...+..                 .-..+++-++|+|+++  +......++..+.....++.+|++|.+.+.. .. ..
T Consensus        80 ~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S  142 (313)
T PRK05564         80 NIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS  142 (313)
T ss_pred             HHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence            22221100                 0112345567777764  4556677777666556788888888766432 11 12


Q ss_pred             CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364          236 VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK  287 (373)
Q Consensus       236 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~  287 (373)
                      ....+.+.+++.++...++......      ...+.++.++..++|.|.-+.
T Consensus       143 Rc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~  188 (313)
T PRK05564        143 RCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVE  188 (313)
T ss_pred             hceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHH
Confidence            3458899999999999888765421      113447788999999886554

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.85  E-value=3.1e-07  Score=88.89  Aligned_cols=196  Identities=14%  Similarity=0.110  Sum_probs=108.6

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..+||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+....... +. .+..       ......+.
T Consensus        14 tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~-pCg~-------C~sCr~i~   83 (709)
T PRK08691         14 TFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GE-PCGV-------CQSCTQID   83 (709)
T ss_pred             CHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CC-CCcc-------cHHHHHHh
Confidence            34579999999999999988652 246789999999999999999998754321100 00 0000       00000000


Q ss_pred             HH----HhCCCCCCCcchhhhHHHHHH---h-hCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364          163 SQ----LLNLPDSGVWNVYDGMNMIRS---R-LRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-LL  231 (373)
Q Consensus       163 ~~----~~~~~~~~~~~~~~~~~~l~~---~-l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-~~  231 (373)
                      ..    +..........++.....+..   . ..+++-++|||+++...  ....++..+......+++|++|.+.. +.
T Consensus        84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~  163 (709)
T PRK08691         84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP  163 (709)
T ss_pred             ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence            00    000000000111111111111   0 13456689999987533  33444443332234566777775542 21


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .. .+....+.+.+++.++....+...+-.....  ...+.+..|++.++|.+.-+..+.
T Consensus       164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAlnLL  221 (709)
T PRK08691        164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALSLL  221 (709)
T ss_pred             hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHHHH
Confidence            11 1122467888999999999998776432222  335678899999999986655444

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.84  E-value=7.6e-08  Score=88.77  Aligned_cols=173  Identities=14%  Similarity=0.169  Sum_probs=98.9

Q ss_pred             cCcccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           85 KELVGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ..+.|++.+++.+...+...           -..++-+.|+|++|+|||+||+.+++.....|-...    ..       
T Consensus       122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~-------  190 (364)
T TIGR01242       122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GS-------  190 (364)
T ss_pred             HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hH-------
Confidence            35789999999988876421           122456999999999999999999997654431110    00       


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--C
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--F  215 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~  215 (373)
                            .+.....+.      ........+...-...+.+|+||+++...                .+..++..+..  .
T Consensus       191 ------~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~  258 (364)
T TIGR01242       191 ------ELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP  258 (364)
T ss_pred             ------HHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence                  011110000      00111111222224567899999986431                23333322211  1


Q ss_pred             CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      ..+..||.||........     ...+..+.++..+.++..++|+.+........ .  -....+++.+.|..
T Consensus       259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~--~~~~~la~~t~g~s  328 (364)
T TIGR01242       259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-D--VDLEAIAKMTEGAS  328 (364)
T ss_pred             CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-c--CCHHHHHHHcCCCC
Confidence            235678888875432211     12356789999999999999988764432221 1  12466777777764

Many proteins may score above the trusted cutoff because an internal

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.84  E-value=6.7e-08  Score=83.11  Aligned_cols=170  Identities=19%  Similarity=0.190  Sum_probs=97.2

Q ss_pred             cCcc-cchhh-HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           85 KELV-GLDSR-LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        85 ~~~v-GR~~~-~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ++|+ |.... +..+..+.. +....+.+.|+|++|+|||+||+.+++..........++. .....         .. .
T Consensus        18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~~---------~~-~   85 (227)
T PRK08903         18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASPL---------LA-F   85 (227)
T ss_pred             cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHhH---------HH-H
Confidence            3445 54443 444444443 2223467899999999999999999987654433444443 11110         00 0


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HH---HHHHhcCCCCCCCCc-EEEEEeCChhh------
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQ---LESLAGKHDWFGIGS-RIFITSRDKHL------  230 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~---l~~l~~~~~~~~~g~-~iliTtR~~~~------  230 (373)
                                            .. ....-+|++||++..  ..   +..++....  ..+. .+|+|++....      
T Consensus        86 ----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~--~~~~~~vl~~~~~~~~~~~l~~  140 (227)
T PRK08903         86 ----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVR--AHGQGALLVAGPAAPLALPLRE  140 (227)
T ss_pred             ----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHH--HcCCcEEEEeCCCCHHhCCCCH
Confidence                                  00 122347889999643  22   222222211  1233 36666664321      


Q ss_pred             --HhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          231 --LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       231 --~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                        ...+.....+.+++++.++-..++...+....  ....++....+++.+.|++..+..+...+
T Consensus       141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence              11222346889999999887777766442212  12335678888889999999988877765

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.81  E-value=1e-07  Score=92.30  Aligned_cols=196  Identities=15%  Similarity=0.123  Sum_probs=111.1

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..+||.+..++.|...+..+. -...+.++|+.|+||||+|+.++..+.......         ....+.......+.
T Consensus        14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i~   83 (647)
T PRK07994         14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREIE   83 (647)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHHH
Confidence            34579999999999999998652 235578999999999999999998764421100         00000000111110


Q ss_pred             HH----H--hCCC-CCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364          163 SQ----L--LNLP-DSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LL  231 (373)
Q Consensus       163 ~~----~--~~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~  231 (373)
                      ..    +  +... .....++.+++..+... ..++.-++|||+++.  ......++..+......+++|++|.+.. +.
T Consensus        84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl  163 (647)
T PRK07994         84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (647)
T ss_pred             cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence            00    0  0000 00111122222222111 245667999999974  3455556554443344666666666543 32


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .. ..-...+.+.+++.++....+...+.....  ....+....|++.++|.+.-...+.
T Consensus       164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ll  221 (647)
T PRK07994        164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSLT  221 (647)
T ss_pred             hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22 112468999999999999998876532221  1234567889999999887544443

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=8.8e-07  Score=84.53  Aligned_cols=196  Identities=13%  Similarity=0.060  Sum_probs=107.0

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..+||-+..++.+...+..+. -...+.++|+.|+||||+|+.++..+........  ..+       +.......+.
T Consensus        14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--~pC-------g~C~~C~~i~   83 (509)
T PRK14958         14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA--NPC-------NDCENCREID   83 (509)
T ss_pred             CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc--ccC-------CCCHHHHHHh
Confidence            34579999999999999997552 2356789999999999999999987643211000  000       0000000000


Q ss_pred             HH----HhCCCCCCCcchhh---hHHHHHH-hhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364          163 SQ----LLNLPDSGVWNVYD---GMNMIRS-RLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLL  231 (373)
Q Consensus       163 ~~----~~~~~~~~~~~~~~---~~~~l~~-~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~  231 (373)
                      ..    +..........+++   ++..+.. -..++.-++|+|+++.  ......++..+......+++|++|.+. .+.
T Consensus        84 ~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~  163 (509)
T PRK14958         84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP  163 (509)
T ss_pred             cCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence            00    00000000011111   1111111 0134556899999974  344555555444334467777766554 222


Q ss_pred             hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ..+ .....+++.+++.++....+...+-.....  ...+....|++.++|.+.-+..+.
T Consensus       164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~lL  221 (509)
T PRK14958        164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALSLL  221 (509)
T ss_pred             HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence            111 123468899999999888776665332222  234567889999999886554443

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.81  E-value=3.2e-08  Score=82.22  Aligned_cols=181  Identities=22%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             ccccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      ..-++|||.+..+..+.-.+..   ..+....+.+|||+|+||||||..+++.....|.   +.. ......        
T Consensus        21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~k--------   88 (233)
T PF05496_consen   21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIEK--------   88 (233)
T ss_dssp             SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC--S--------
T ss_pred             CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhhh--------
Confidence            3457899999988887766552   2334678999999999999999999998776542   111 100111        


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCC--------CCCC----------
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDW--------FGIG----------  218 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~--------~~~g----------  218 (373)
                                       ..++...+. .+ +++-+|.+|+++..  .+-+.+.+....        .+++          
T Consensus        89 -----------------~~dl~~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~  149 (233)
T PF05496_consen   89 -----------------AGDLAAILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP  149 (233)
T ss_dssp             -----------------CHHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred             -----------------HHHHHHHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence                             011111111 12 23457888999743  222222222110        0111          


Q ss_pred             -cEEEEEeCChhhHhhcCC--CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcC
Q 017364          219 -SRIFITSRDKHLLMAHGV--DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFG  295 (373)
Q Consensus       219 -~~iliTtR~~~~~~~~~~--~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~  295 (373)
                       +.|=.|||...+...+..  .-..+++..+.+|-..++.+.+..-.  .+...+.+.+|++.|.|.|.-..-+...++.
T Consensus       150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD  227 (233)
T PF05496_consen  150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRVRD  227 (233)
T ss_dssp             -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred             ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence             223347776543322222  23457999999999999987764322  2355678999999999999877777666644

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.81  E-value=4.2e-07  Score=75.74  Aligned_cols=88  Identities=15%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCC
Q 017364          189 HKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKP  264 (373)
Q Consensus       189 ~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~  264 (373)
                      +.+-++|+||++..  ...+.++..+......+.+|++|++.. +.... .....+.+.+++.++..+.+....      
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------  168 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------  168 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence            45668999998643  335555555544345666777776542 22211 123589999999999999987761      


Q ss_pred             CchHHHHHHHHHHHhCCCch
Q 017364          265 WKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       265 ~~~~~~~~~~i~~~~~g~Pl  284 (373)
                        ...+.+..+++.++|.|.
T Consensus       169 --i~~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       169 --ISEEAAELLLALAGGSPG  186 (188)
T ss_pred             --CCHHHHHHHHHHcCCCcc
Confidence              124568899999999985

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.80  E-value=2.6e-07  Score=87.04  Aligned_cols=164  Identities=16%  Similarity=0.168  Sum_probs=98.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR  186 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (373)
                      ..+.|+|+.|+|||+|++.+++.+....  ..++++. .         ..+...+...+...        ......+.+.
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~---------~~f~~~~~~~l~~~--------~~~~~~~~~~  203 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-G---------DEFARKAVDILQKT--------HKEIEQFKNE  203 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence            5689999999999999999999765432  2223332 1         12233333322110        0112233343


Q ss_pred             hCCCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCChh---------hHhhcCCCceEeCCCCCHhHH
Q 017364          187 LRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDKH---------LLMAHGVDEVYMHEHLNYDEA  250 (373)
Q Consensus       187 l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~ea  250 (373)
                      +. ..-+||+||+....       .+-.+.....  ..|..||+|+....         +...+...-.+.+.+++.++.
T Consensus       204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r  280 (450)
T PRK14087        204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA  280 (450)
T ss_pred             hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence            33 34588899995321       2222222222  23446888876432         223334456788999999999


Q ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      .+++.+.+-.........+++.+-|++.+.|.|..+.-+...+
T Consensus       281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l  323 (450)
T PRK14087        281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL  323 (450)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            9999888743221112446788999999999999987776444

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.79  E-value=1e-06  Score=82.12  Aligned_cols=200  Identities=12%  Similarity=0.103  Sum_probs=108.9

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEeechhhhcccCHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--FEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      .-..++|.+...+.+...+..+. -+..+.++||+|+||||+|+.++..+...  +...-|....   ....+.....+.
T Consensus        14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~~   89 (397)
T PRK14955         14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCRD   89 (397)
T ss_pred             cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHHH
Confidence            34579999998999998888652 23568899999999999999999876432  1111011000   000000000000


Q ss_pred             HHHH----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCC-h
Q 017364          161 LISQ----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRD-K  228 (373)
Q Consensus       161 ~~~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~-~  228 (373)
                      +...    +...........++... +.+.+     .+.+-++|+|+++..  ..++.++..+....+.+.+|+++.+ .
T Consensus        90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~  168 (397)
T PRK14955         90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH  168 (397)
T ss_pred             HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence            0000    00000000011222221 22222     345568899998743  3455555554433446666665543 3


Q ss_pred             hhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          229 HLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       229 ~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      .+.... .....+++.+++.++....+...+....  .....+.+..+++.++|.+.-+...
T Consensus       169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~~  228 (397)
T PRK14955        169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQSI  228 (397)
T ss_pred             HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            332221 1124688999999999988877653221  1133567899999999988655443

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.78  E-value=3.7e-07  Score=87.12  Aligned_cols=195  Identities=17%  Similarity=0.157  Sum_probs=107.9

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEe-echhhhc--ccCHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLA-NVREISK--KSGLVFL  157 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~--~~~~~~~  157 (373)
                      -..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+....+.   .+-.+ .+..+..  ..++..+
T Consensus        15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei   93 (546)
T PRK14957         15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI   93 (546)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence            3579999999999999887652 23568899999999999999999876432110   00000 0000000  0000000


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLLMA  233 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~  233 (373)
                              -........+...++..+... ..+++-++|+|+++.  ....+.++..+......+.+|++|.+. .+...
T Consensus        94 --------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~t  165 (546)
T PRK14957         94 --------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVT  165 (546)
T ss_pred             --------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhh
Confidence                    000000001111222222211 235667999999974  344555555554333456666555544 23222


Q ss_pred             -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364          234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL  289 (373)
Q Consensus       234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~  289 (373)
                       ......+++.+++.++....+...+....  .....+....|++.++|.+. ++..+
T Consensus       166 I~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL  221 (546)
T PRK14957        166 ILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL  221 (546)
T ss_pred             HHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence             12346889999999999888877553322  12345567889999999775 44444

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.78  E-value=1.3e-06  Score=83.80  Aligned_cols=192  Identities=15%  Similarity=0.068  Sum_probs=104.5

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..++|++..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+....    |...     ...+.....+.+.
T Consensus        14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr~i~   83 (605)
T PRK05896         14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCESIN   83 (605)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHHHHH
Confidence            34579999999999999887542 236788999999999999999999864321    1100     0000000000000


Q ss_pred             HHH----hCCCCCCCcch---hhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364          163 SQL----LNLPDSGVWNV---YDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLL  231 (373)
Q Consensus       163 ~~~----~~~~~~~~~~~---~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~  231 (373)
                      ...    ...........   +.....+... ..+++-++|+|+++.  ......++..+......+.+|++|.+. .+.
T Consensus        84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl  163 (605)
T PRK05896         84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP  163 (605)
T ss_pred             cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence            000    00000000111   1111111111 122344799999864  334444544333223355566555443 232


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .. ......+++.+++.++....+...+......  ...+.+..+++.++|.+.-+
T Consensus       164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~A  217 (605)
T PRK05896        164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDG  217 (605)
T ss_pred             HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence            22 1224578999999999999888766332211  22456888999999977543

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=3e-06  Score=81.83  Aligned_cols=194  Identities=15%  Similarity=0.129  Sum_probs=108.4

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..+||.+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+....... . ..+.       .......+..
T Consensus        12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~-~pCg-------~C~~C~~i~~   81 (584)
T PRK14952         12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A-TPCG-------VCESCVALAP   81 (584)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C-Cccc-------ccHHHHHhhc
Confidence            3579999999999999998652 235678999999999999999998765321000 0 0000       0000000000


Q ss_pred             H------H--hCC-CCCCCcchhhhHHHHHHh-hCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCC-hhh
Q 017364          164 Q------L--LNL-PDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRD-KHL  230 (373)
Q Consensus       164 ~------~--~~~-~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~-~~~  230 (373)
                      .      .  ... .......+.++...+... ..+++-++|+|+++  +....+.|+..+......+.+|++|.+ ..+
T Consensus        82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl  161 (584)
T PRK14952         82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV  161 (584)
T ss_pred             ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence            0      0  000 000011111111111111 13455688999986  344555665555444456666665544 333


Q ss_pred             Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364          231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL  289 (373)
Q Consensus       231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~  289 (373)
                      ...+ .....+.+.+++.++..+.+...+......  ...+....|++.++|.+. ++..+
T Consensus       162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~aln~L  220 (584)
T PRK14952        162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRDTLSVL  220 (584)
T ss_pred             HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            3221 234679999999999998887765332221  234567888999999875 44443

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.74  E-value=1.1e-06  Score=87.98  Aligned_cols=190  Identities=14%  Similarity=0.097  Sum_probs=106.4

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..+||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+........-  .+.       .......+..
T Consensus        14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~--pCg-------~C~sC~~~~~   83 (824)
T PRK07764         14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST--PCG-------ECDSCVALAP   83 (824)
T ss_pred             HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC--CCc-------ccHHHHHHHc
Confidence            3579999999999999998652 23568899999999999999999886432110000  000       0000000000


Q ss_pred             H------HhCCCCCCCcchhhhHHHHHH-----hhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 017364          164 Q------LLNLPDSGVWNVYDGMNMIRS-----RLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-H  229 (373)
Q Consensus       164 ~------~~~~~~~~~~~~~~~~~~l~~-----~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~  229 (373)
                      .      +..........+++... +.+     -..++.-++|||+++.  ....+.|+..+......+.+|++|.+. .
T Consensus        84 g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k  162 (824)
T PRK07764         84 GGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK  162 (824)
T ss_pred             CCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence            0      00000000011111111 111     1234556889999874  344555555554434566666666543 3


Q ss_pred             hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          230 LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       230 ~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      +...+ .....|++.+++.++...++...+-.....  ...+....|+..++|.+..+
T Consensus       163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A  218 (824)
T PRK07764        163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS  218 (824)
T ss_pred             hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence            33322 234678999999999998887765322211  23455778899999988444

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=3.4e-06  Score=78.03  Aligned_cols=182  Identities=16%  Similarity=0.175  Sum_probs=104.6

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--------ccceEEEeechhhhcccCHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--------FEASCFLANVREISKKSGLV  155 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~~  155 (373)
                      -..++|.+...+.+...+..+. -.+.+.++|++|+||||+|+.++..+...        +...+.-.+   ....... 
T Consensus        16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~-   90 (367)
T PRK14970         16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AASNNSV-   90 (367)
T ss_pred             HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cccCCCH-
Confidence            3568999999999999997652 24688899999999999999998876432        111111000   0000001 


Q ss_pred             HHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHh
Q 017364          156 FLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLM  232 (373)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~  232 (373)
                      .....+.......                 -+.+++-++++|+++..  ..+..+...+......+.+|+++... ....
T Consensus        91 ~~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~  153 (367)
T PRK14970         91 DDIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP  153 (367)
T ss_pred             HHHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence            1111111111000                 01234558999998643  33555544333223345555555432 2221


Q ss_pred             h-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          233 A-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       233 ~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      . ......+++.+++.++....+...+......  ...+.++.+++.++|.+..+...
T Consensus       154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~~~~  209 (367)
T PRK14970        154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDALSI  209 (367)
T ss_pred             HHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHHHHH
Confidence            1 1223578999999999998888766432221  23467888999999977644333

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.73  E-value=1.8e-06  Score=84.28  Aligned_cols=196  Identities=15%  Similarity=0.098  Sum_probs=109.8

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..+||.+...+.|...+..+. -.+.+.++|+.|+||||+|+.+++.+.......-+        ...+.......+..
T Consensus        15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~~   85 (585)
T PRK14950         15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIAE   85 (585)
T ss_pred             HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHhc
Confidence            3579999999999998887652 23567899999999999999999876422110000        00000011111110


Q ss_pred             HHhC----CCCCCCcchhhhHHHHHHh-----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364          164 QLLN----LPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLL  231 (373)
Q Consensus       164 ~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~  231 (373)
                      ....    .........+... .+.+.     ....+-++|+|+++..  ...+.|+..+......+.+|+++.+. .+.
T Consensus        86 ~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll  164 (585)
T PRK14950         86 GSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP  164 (585)
T ss_pred             CCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence            0000    0000011111111 11111     1245668999998643  44555655444333466666666543 222


Q ss_pred             hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      ..+ .....+.+.+++..+....+...+......  ...+.+..|++.++|.+..+.....
T Consensus       165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le  223 (585)
T PRK14950        165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ  223 (585)
T ss_pred             HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            211 123578899999999998887776432222  2346688999999999976555443

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.73  E-value=1e-07  Score=83.67  Aligned_cols=173  Identities=19%  Similarity=0.248  Sum_probs=102.0

Q ss_pred             cCcccchhhHH---HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           85 KELVGLDSRLE---KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        85 ~~~vGR~~~~~---~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ..+||.+..+.   .|.+++..+  ..+.+.+||++|+||||||+.++..-+.+.  ..|+.    .+....-..-.+.+
T Consensus       138 ~dyvGQ~hlv~q~gllrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~i  209 (554)
T KOG2028|consen  138 DDYVGQSHLVGQDGLLRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDI  209 (554)
T ss_pred             HHhcchhhhcCcchHHHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHH
Confidence            45677665433   333444433  457789999999999999999998766542  33443    12222222222333


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEE--EeCChhhHhh---c
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFI--TSRDKHLLMA---H  234 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~ili--TtR~~~~~~~---~  234 (373)
                      +++.-                -...+..++.+|.+|.++  +..+-+-|++...   +|.-++|  ||-|+.+...   +
T Consensus       210 fe~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aLl  270 (554)
T KOG2028|consen  210 FEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAALL  270 (554)
T ss_pred             HHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHHH
Confidence            33211                011235678899999996  4445566666553   5665555  7777654211   2


Q ss_pred             CCCceEeCCCCCHhHHHHHHHHhh---cCCCC---CC-----chHHHHHHHHHHHhCCCch
Q 017364          235 GVDEVYMHEHLNYDEALGLFCLKA---FKSHK---PW-----KGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       235 ~~~~~~~l~~L~~~ea~~l~~~~~---~~~~~---~~-----~~~~~~~~~i~~~~~g~Pl  284 (373)
                      ....++.|++|..++...++.+..   +....   +.     .....+.+-++..|.|-..
T Consensus       271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR  331 (554)
T KOG2028|consen  271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR  331 (554)
T ss_pred             hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence            244688999999999999987632   11111   11     1234556677777877654

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.73  E-value=2.4e-06  Score=82.15  Aligned_cols=191  Identities=14%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+.......  ...+.       .......+..
T Consensus        15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~--~~pcg-------~C~~C~~i~~   84 (527)
T PRK14969         15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT--ATPCG-------VCSACLEIDS   84 (527)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CCCCC-------CCHHHHHHhc
Confidence            3568999999999999888642 235678999999999999999998764321100  00000       0000000000


Q ss_pred             ----HHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364          164 ----QLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLM  232 (373)
Q Consensus       164 ----~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~  232 (373)
                          .+...........+.....+...    ..+++-++|+|+++..  .....++..+......+.+|++|.+.. +..
T Consensus        85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~  164 (527)
T PRK14969         85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV  164 (527)
T ss_pred             CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence                00000000001111111111111    1345669999999743  335555554443334666666665442 221


Q ss_pred             hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .+ .....+++.+++.++....+...+.....  ....+....|++.++|.+.-+
T Consensus       165 tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~a  217 (527)
T PRK14969        165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDA  217 (527)
T ss_pred             hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence            11 11357889999999999888776532221  123456788999999988643

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.72  E-value=3.4e-07  Score=91.83  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=87.4

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      +.++||+.+++.+...|.....  .-+.++|++|+|||++++.+++++....      ...+|..+.........     
T Consensus       182 ~~~igr~~ei~~~~~~L~~~~~--~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~-----  254 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRRKK--NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK-----  254 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcCCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc-----
Confidence            5799999999999998875533  4578999999999999999999874321      23344332211110000     


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccHH-----------HHHHHhcCCCCCCCCcEEEEEeC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIELQ-----------QLESLAGKHDWFGIGSRIFITSR  226 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~-----------~l~~l~~~~~~~~~g~~iliTtR  226 (373)
                                   ...+....+..+...+ ...+.+|++|+++...           .-+-+.+.+.  ....++|-+|.
T Consensus       255 -------------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt  319 (731)
T TIGR02639       255 -------------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTT  319 (731)
T ss_pred             -------------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecC
Confidence                         0011222222222222 3457899999986331           1222333332  12234555554


Q ss_pred             ChhhHh------h-cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          227 DKHLLM------A-HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       227 ~~~~~~------~-~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ..+...      . ......+.+++++.++..++++...
T Consensus       320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~  358 (731)
T TIGR02639       320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK  358 (731)
T ss_pred             HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence            322100      0 1123578999999999999998654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.72  E-value=4.5e-07  Score=83.65  Aligned_cols=220  Identities=13%  Similarity=0.155  Sum_probs=108.8

Q ss_pred             EEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCc-----------CCCCChhHHHhhhh
Q 017364            2 IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWE-----------LKDRNEPEFIVDIV   70 (373)
Q Consensus         2 v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~   70 (373)
                      |++-+.+++....+.|.|||+++.....+....   +++.|.+..++++....+.           -+..+..+...++.
T Consensus       285 vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~---q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~  361 (614)
T KOG0927|consen  285 VCTNIIHLDNKKLIYYEGNYDQYVKTRSELEEN---QMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKME  361 (614)
T ss_pred             HhhhhheecccceeeecCCHHHHhhHHHHHhHH---HHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHh
Confidence            456677888888889999999998877664322   2333333333333222111           11122222222222


Q ss_pred             hccc-c------cccC---------cc--ccccCcccchh---hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHH
Q 017364           71 KEIS-C------KISA---------KS--ETLKELVGLDS---RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVY  129 (373)
Q Consensus        71 ~~v~-~------~~~~---------~~--~~~~~~vGR~~---~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~  129 (373)
                      .... .      .+..         +|  .....-+|.++   ....+...+..+    ..|+++||+|+|||||.+.++
T Consensus       362 ~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~----srvAlVGPNG~GKsTLlKl~~  437 (614)
T KOG0927|consen  362 ADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLD----SRVALVGPNGAGKSTLLKLIT  437 (614)
T ss_pred             hccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcc----cceeEecCCCCchhhhHHHHh
Confidence            2110 0      0110         11  11122333332   334444444444    679999999999999999999


Q ss_pred             HHHhccccceE------EE-eechhh----------------hcccCHHHHHHHHHHHHhCCCCCC------CcchhhhH
Q 017364          130 DLISHEFEASC------FL-ANVREI----------------SKKSGLVFLQKQLISQLLNLPDSG------VWNVYDGM  180 (373)
Q Consensus       130 ~~~~~~f~~~~------~~-~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  180 (373)
                      ..+.+.-+.+.      +. .+-+..                ..........+.++....-.....      .++-....
T Consensus       438 gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r  517 (614)
T KOG0927|consen  438 GDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR  517 (614)
T ss_pred             hccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchh
Confidence            87654322111      11 000000                000111222233333321111111      11112222


Q ss_pred             HHHHHhhCCCceEEEec------ccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh
Q 017364          181 NMIRSRLRHKKVLLVID------DVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA  233 (373)
Q Consensus       181 ~~l~~~l~~~~~LlvlD------dv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~  233 (373)
                      -.+...+-..+-+|+||      |+...+.+.+.+..++    |+ ++++|++..+...
T Consensus       518 VlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~----Gg-vv~vSHDfrlI~q  571 (614)
T KOG0927|consen  518 VLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP----GG-VVLVSHDFRLISQ  571 (614)
T ss_pred             HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC----Cc-eeeeechhhHHHH
Confidence            33444456778899999      4566777888888876    66 8889998866544

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.72  E-value=2.9e-06  Score=81.76  Aligned_cols=197  Identities=12%  Similarity=0.142  Sum_probs=109.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..++|-+...+.|...+..+. -.+.+.++|+.|+||||+|+.+++.+.......-         ...........+..
T Consensus        15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~---------~pCg~C~sC~~i~~   84 (624)
T PRK14959         15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG---------EPCNTCEQCRKVTQ   84 (624)
T ss_pred             HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC---------CCCcccHHHHHHhc
Confidence            3568998888888898887642 2467889999999999999999987643210000         00000000000000


Q ss_pred             HH----hCCCCCCCcchhhhHHHHHHh-----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364          164 QL----LNLPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLL  231 (373)
Q Consensus       164 ~~----~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~  231 (373)
                      ..    ..........++. ++.+.+.     ..+++-++|+|+++..  .....|+..+........+|++|.+. .+.
T Consensus        85 g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll  163 (624)
T PRK14959         85 GMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP  163 (624)
T ss_pred             CCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence            00    0000000001111 1112111     2345678999998643  44555555543333456666666554 332


Q ss_pred             hhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 017364          232 MAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP-LALKVLGSFL  293 (373)
Q Consensus       232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l  293 (373)
                      ..+ .....+.+.+++.++....+...+.....  ....+.+..|++.++|.+ .++..+...+
T Consensus       164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll  225 (624)
T PRK14959        164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL  225 (624)
T ss_pred             HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            221 12347889999999999988876543221  133566888999999975 5666665443

>PRK09087 hypothetical protein; Validated

Probab=98.71  E-value=2.6e-07  Score=78.90  Aligned_cols=142  Identities=14%  Similarity=0.040  Sum_probs=88.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      +.+.|+|++|+|||+|++.++....     ..++.. .         .+.......                      +.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-~---------~~~~~~~~~----------------------~~   87 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-N---------EIGSDAANA----------------------AA   87 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-H---------HcchHHHHh----------------------hh
Confidence            6789999999999999998887532     223321 0         111111111                      01


Q ss_pred             CCceEEEeccccc----HHHHHHHhcCCCCCCCCcEEEEEeCCh---------hhHhhcCCCceEeCCCCCHhHHHHHHH
Q 017364          189 HKKVLLVIDDVIE----LQQLESLAGKHDWFGIGSRIFITSRDK---------HLLMAHGVDEVYMHEHLNYDEALGLFC  255 (373)
Q Consensus       189 ~~~~LlvlDdv~~----~~~l~~l~~~~~~~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~l~~  255 (373)
                      +  -+|++||++.    ...+-.+.....  ..|..+|+|++..         ++...+.....+++++++.++-.+++.
T Consensus        88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~  163 (226)
T PRK09087         88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF  163 (226)
T ss_pred             c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence            1  2788899853    233433433332  2366788888743         233344556789999999999999998


Q ss_pred             HhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          256 LKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      +.+-...  ....+++.+-|++.+.|..-.+..+...+
T Consensus       164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L  199 (226)
T PRK09087        164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRL  199 (226)
T ss_pred             HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            8874322  12346678888888888877776554444

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.71  E-value=6.9e-06  Score=78.05  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=107.3

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----cceEEEeechhhhc--ccCHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----EASCFLANVREISK--KSGLVF  156 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~--~~~~~~  156 (373)
                      -..++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+...-     ++..- .++..+..  ..++..
T Consensus        15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~~e   92 (486)
T PRK14953         15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDLIE   92 (486)
T ss_pred             HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcEEE
Confidence            3568999999999999997652 235678899999999999999998764210     11100 00000000  000000


Q ss_pred             HHHHHHHHHhCCCC-CCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhH
Q 017364          157 LQKQLISQLLNLPD-SGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLL  231 (373)
Q Consensus       157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~  231 (373)
                               ..... ....+...+...+... ..+++-++|+|+++..  ...+.++..+....+...+|++|.+. .+.
T Consensus        93 ---------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~  163 (486)
T PRK14953         93 ---------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP  163 (486)
T ss_pred             ---------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence                     00000 0000111111111111 1345669999998643  34455554444333455566555443 222


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .. ......+.+.+++.++....+...+-....  ....+.+..+++.++|.+..+..+.
T Consensus       164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L  221 (486)
T PRK14953        164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL  221 (486)
T ss_pred             HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            21 122357899999999999888876533221  1234667889999999887555544

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.70  E-value=2.7e-06  Score=82.71  Aligned_cols=199  Identities=13%  Similarity=0.111  Sum_probs=107.9

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      .-..++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.++..+...-  +...|......   ..+.....+.
T Consensus        14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC~~   89 (620)
T PRK14954         14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESCRD   89 (620)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHHHH
Confidence            3457999999999999988754 2235688999999999999999998764321  11111110000   0000000000


Q ss_pred             HHHHH-hC---CCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCC-hh
Q 017364          161 LISQL-LN---LPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRD-KH  229 (373)
Q Consensus       161 ~~~~~-~~---~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~-~~  229 (373)
                      +.... .+   .........++........    +.+.+-++|+|+++..  ...+.|+..+......+.+|++|.+ ..
T Consensus        90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k  169 (620)
T PRK14954         90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK  169 (620)
T ss_pred             HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence            00000 00   0000111122222221111    2344557899998653  3355555554433345555555543 33


Q ss_pred             hHhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364          230 LLMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK  287 (373)
Q Consensus       230 ~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~  287 (373)
                      +... ......+++.+++.++....+...+.....  ....+.++.|++.++|...-+.
T Consensus       170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~al  226 (620)
T PRK14954        170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDAQ  226 (620)
T ss_pred             hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHH
Confidence            3322 223468999999999999888766532221  1235668899999999766443

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.69  E-value=1.4e-06  Score=82.09  Aligned_cols=178  Identities=19%  Similarity=0.118  Sum_probs=100.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR  186 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (373)
                      ...+.|+|++|+|||+|+..+++.+...++ ..+.+...         ..+...+...+...      .    ...+.+.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~---------~~f~~~~~~~~~~~------~----~~~f~~~  190 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS---------EKFLNDLVDSMKEG------K----LNEFREK  190 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH---------HHHHHHHHHHHhcc------c----HHHHHHH
Confidence            345999999999999999999998765543 23333222         12233333322110      1    1223333


Q ss_pred             hCCCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeC-ChhhH--------hhcCCCceEeCCCCCHhHH
Q 017364          187 LRHKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSR-DKHLL--------MAHGVDEVYMHEHLNYDEA  250 (373)
Q Consensus       187 l~~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR-~~~~~--------~~~~~~~~~~l~~L~~~ea  250 (373)
                      +....-+|++||++..       ..+-.+...+.  ..|..+|+||. .+...        ..+.....+.+++.+.+.-
T Consensus       191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r  268 (440)
T PRK14088        191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR  268 (440)
T ss_pred             HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence            3344568999999632       12222222221  12446888774 33221        1223445788999999999


Q ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCHHHHHHHHHHh
Q 017364          251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTIAEWESALQRL  308 (373)
Q Consensus       251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~~~~~~~l~~l  308 (373)
                      .+++.+.+......  ..+++...|++.+.|+.-.|.-+-..+      .+  -+......++..+
T Consensus       269 ~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~  332 (440)
T PRK14088        269 KKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF  332 (440)
T ss_pred             HHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            99998877432222  335678889988888766665444333      12  2344555555543

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.68  E-value=2.9e-06  Score=82.31  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=111.2

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce----EEEeechhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS----CFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~~~  158 (373)
                      ....++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.++..+.......    .+- .+       +.....
T Consensus        22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-~c-------g~c~~C   92 (598)
T PRK09111         22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-LC-------GVGEHC   92 (598)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-cC-------cccHHH
Confidence            34679999999999999998652 245788999999999999999999764322100    000 00       000000


Q ss_pred             HHHHHHH----hCCCCCCCcchhh---hHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCC-
Q 017364          159 KQLISQL----LNLPDSGVWNVYD---GMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRD-  227 (373)
Q Consensus       159 ~~~~~~~----~~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~-  227 (373)
                      ..+....    ..........+++   ++..+... +..++-++|+|+++..  ...+.++..+......+.+|++|.+ 
T Consensus        93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~  172 (598)
T PRK09111         93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI  172 (598)
T ss_pred             HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence            1111000    0000000111222   22211111 1334557899998643  3455555544433456667666543 


Q ss_pred             hhhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          228 KHLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       228 ~~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ..+...+ .....+.+.+++.++....+...+......  ...+....|++.++|.+.-+....
T Consensus       173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~~L  234 (598)
T PRK09111        173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLSLL  234 (598)
T ss_pred             hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            3332222 123578999999999999998776332211  234668889999999987665444

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.66  E-value=9.3e-07  Score=89.54  Aligned_cols=179  Identities=12%  Similarity=0.050  Sum_probs=99.1

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVF  156 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~  156 (373)
                      .-+.++||+.++.++...|.....  ..+.++|++|+||||+|+.+++++....      ...+|..+...+....    
T Consensus       185 ~ld~~iGr~~ei~~~i~~l~r~~~--~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~----  258 (852)
T TIGR03345       185 KIDPVLGRDDEIRQMIDILLRRRQ--NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGA----  258 (852)
T ss_pred             CCCcccCCHHHHHHHHHHHhcCCc--CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccc----
Confidence            345799999999999998876533  4567999999999999999999875431      1223322221110000    


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHH-HHHhh-CCCceEEEecccccHH---------HHH-HHhcCCCCCCCCcEEEEE
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNM-IRSRL-RHKKVLLVIDDVIELQ---------QLE-SLAGKHDWFGIGSRIFIT  224 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l-~~~~~LlvlDdv~~~~---------~l~-~l~~~~~~~~~g~~iliT  224 (373)
                                    .........+.. +.+.. .+.+++|++|+++...         +.. -+.+.+.  ....++|-+
T Consensus       259 --------------~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~Iga  322 (852)
T TIGR03345       259 --------------SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAA  322 (852)
T ss_pred             --------------ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEe
Confidence                          000111111111 11111 2468999999986532         111 1333322  123456666


Q ss_pred             eCChhhHhh-------cCCCceEeCCCCCHhHHHHHHHHhhcC--CCCCCchHHHHHHHHHHHhCCCc
Q 017364          225 SRDKHLLMA-------HGVDEVYMHEHLNYDEALGLFCLKAFK--SHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       225 tR~~~~~~~-------~~~~~~~~l~~L~~~ea~~l~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      |........       ......+.+++++.+++..+++.....  .........+....+++.+.++.
T Consensus       323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi  390 (852)
T TIGR03345       323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI  390 (852)
T ss_pred             cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence            654322110       113358999999999999997544321  11112233455667777776554

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.66  E-value=9.2e-07  Score=82.03  Aligned_cols=172  Identities=15%  Similarity=0.168  Sum_probs=96.3

Q ss_pred             CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .+.|++.+++.+...+..           +-..++-|.|+|++|+|||++|+.+++.....|    .......       
T Consensus       132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~----i~v~~~~-------  200 (389)
T PRK03992        132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF----IRVVGSE-------  200 (389)
T ss_pred             HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE----EEeehHH-------
Confidence            467999999988876632           112346699999999999999999998765321    1111111       


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~  216 (373)
                            +.....+.      ........+...-...+.+|+||+++...                .+..++.....  ..
T Consensus       201 ------l~~~~~g~------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~  268 (389)
T PRK03992        201 ------LVQKFIGE------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR  268 (389)
T ss_pred             ------HhHhhccc------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence                  11111110      00111111222224567899999987531                12233322221  12


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      .+..||.||........     ...+..+.+++.+.++..++|+.+........ .  .....+++.+.|.-
T Consensus       269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~s  337 (389)
T PRK03992        269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGAS  337 (389)
T ss_pred             CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCCC
Confidence            35567777765433221     12346799999999999999987764322211 1  11455667776654

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.64  E-value=6.3e-07  Score=91.02  Aligned_cols=151  Identities=11%  Similarity=0.082  Sum_probs=86.7

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      ...+||+++++.+...|.....  +-+.++|++|+|||++|..++.++...      -+..+|..+.....         
T Consensus       179 ~~~igr~~ei~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~---------  247 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL---------  247 (821)
T ss_pred             CCCCCcHHHHHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh---------
Confidence            4699999999999999975433  456799999999999999999987532      12344443221110         


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHH-HhhCCCceEEEecccccHH---------HHHHHh-cCCCCCCCCcEEEEEeCC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIR-SRLRHKKVLLVIDDVIELQ---------QLESLA-GKHDWFGIGSRIFITSRD  227 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~---------~l~~l~-~~~~~~~~g~~iliTtR~  227 (373)
                              ... ....+....+..+. +....++.+|++|+++...         ....++ +.+.  ....++|.+|..
T Consensus       248 --------ag~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~  316 (821)
T CHL00095        248 --------AGT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL  316 (821)
T ss_pred             --------ccC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence                    000 00112222222222 2223567899999986322         122222 2221  123456666554


Q ss_pred             hhhHhh-------cCCCceEeCCCCCHhHHHHHHHHh
Q 017364          228 KHLLMA-------HGVDEVYMHEHLNYDEALGLFCLK  257 (373)
Q Consensus       228 ~~~~~~-------~~~~~~~~l~~L~~~ea~~l~~~~  257 (373)
                      ......       ......+.++..+.++...+++..
T Consensus       317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l  353 (821)
T CHL00095        317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL  353 (821)
T ss_pred             HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence            432110       113356788889999998887643

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.64  E-value=2.3e-06  Score=80.24  Aligned_cols=178  Identities=20%  Similarity=0.153  Sum_probs=99.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcccc--ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFE--ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS  185 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (373)
                      ...+.|+|++|+|||+|++.+++.+....+  .++++. ..         .+...+...+...      .    ...+.+
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~---------~~~~~~~~~~~~~------~----~~~~~~  195 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SE---------KFTNDFVNALRNN------K----MEEFKE  195 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HH---------HHHHHHHHHHHcC------C----HHHHHH
Confidence            356899999999999999999998765532  233332 21         1122222222111      1    122333


Q ss_pred             hhCCCceEEEecccccHH----HHHHHhcCCCC-CCCCcEEEEEeCCh-hh--------HhhcCCCceEeCCCCCHhHHH
Q 017364          186 RLRHKKVLLVIDDVIELQ----QLESLAGKHDW-FGIGSRIFITSRDK-HL--------LMAHGVDEVYMHEHLNYDEAL  251 (373)
Q Consensus       186 ~l~~~~~LlvlDdv~~~~----~l~~l~~~~~~-~~~g~~iliTtR~~-~~--------~~~~~~~~~~~l~~L~~~ea~  251 (373)
                      .+.+ .-+|+|||++...    ..+.+...+.. ...+..+|+|+... ..        ...+.....+.+++.+.++-.
T Consensus       196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~  274 (405)
T TIGR00362       196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL  274 (405)
T ss_pred             HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence            3332 3488999996421    11122211110 01245577777643 21        122223346899999999999


Q ss_pred             HHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCHHHHHHHHHHh
Q 017364          252 GLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTIAEWESALQRL  308 (373)
Q Consensus       252 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~~~~~~~l~~l  308 (373)
                      .++...+......  ..+++.+.|++.+.|..-.|.-+...+      .+  -+......++..+
T Consensus       275 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~  337 (405)
T TIGR00362       275 AILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL  337 (405)
T ss_pred             HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            9998887443222  336778889999999887655443332      11  2345566666654

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.61  E-value=7.8e-06  Score=77.85  Aligned_cols=196  Identities=13%  Similarity=0.133  Sum_probs=109.4

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccc--eEEEe-echhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEA--SCFLA-NVREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~-~~~~~~~~~~~~~~~  158 (373)
                      .-..++|-+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+-.. ...  .+... .+.........    
T Consensus        12 ~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~----   86 (535)
T PRK08451         12 HFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI----   86 (535)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC----
Confidence            34579999989999999987652 24567899999999999999999876321 110  00000 00000000000    


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LL  231 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~  231 (373)
                           .+...........+.....+...    ..+++-++|+|+++.  .+....++..+......+++|++|.+.. +.
T Consensus        87 -----dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~  161 (535)
T PRK08451         87 -----DIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP  161 (535)
T ss_pred             -----eEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence                 00000000000112222222110    124456889999864  3445555544433344677777776542 11


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .. ......+++.+++.++....+...+......  ...+.+..|++.++|.+.-+..+.
T Consensus       162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnlL  219 (535)
T PRK08451        162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTLL  219 (535)
T ss_pred             hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence            11 1123578999999999999987766332222  235678899999999986665554

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=1.3e-07  Score=93.43  Aligned_cols=39  Identities=26%  Similarity=0.479  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+..+    .+++|+|++|+|||||++.++....+.
T Consensus       327 il~~isl~i~~G----e~~~l~G~NGsGKSTLlk~l~G~~~p~  365 (638)
T PRK10636        327 ILDSIKLNLVPG----SRIGLLGRNGAGKSTLIKLLAGELAPV  365 (638)
T ss_pred             eeccceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            344444444455    789999999999999999999876543

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.60  E-value=1.2e-05  Score=78.85  Aligned_cols=191  Identities=13%  Similarity=0.177  Sum_probs=105.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..++|.+...+.+...+..+. -.+.+.++||.|+||||+|+.++..+-.......+- .+....          ....
T Consensus        17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~----------~~~~   84 (725)
T PRK07133         17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECI----------ENVN   84 (725)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHH----------Hhhc
Confidence            3568999999999999997652 246778999999999999999998754321100000 000000          0000


Q ss_pred             H---HhCCCC---CCCcchhhhHHHHHHh-hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCC-hhhHhh
Q 017364          164 Q---LLNLPD---SGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRD-KHLLMA  233 (373)
Q Consensus       164 ~---~~~~~~---~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~-~~~~~~  233 (373)
                      .   ......   .....++.+...+... ..+++-++|+|+++.  ......|+..+......+.+|++|.+ ..+...
T Consensus        85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T  164 (725)
T PRK07133         85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT  164 (725)
T ss_pred             CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence            0   000000   0001111222222111 134566899999863  34555565544433345555555543 333322


Q ss_pred             -cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364          234 -HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV  288 (373)
Q Consensus       234 -~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~  288 (373)
                       ......+.+.+++.++....+...+.....  ....+.+..++..++|.+.-+..
T Consensus       165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~Als  218 (725)
T PRK07133        165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALS  218 (725)
T ss_pred             HHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence             122358999999999999888765432221  12245678899999997754433

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.60  E-value=1.5e-05  Score=77.01  Aligned_cols=194  Identities=14%  Similarity=0.108  Sum_probs=110.3

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----cceEEEeechhhhcccCHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----EASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      .-..++|-+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..-     ++..- .++..+.....+.  
T Consensus        14 ~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C-~~C~~i~~~~~~d--   89 (563)
T PRK06647         14 DFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC-SSCKSIDNDNSLD--   89 (563)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc-hHHHHHHcCCCCC--
Confidence            34579999999999999998652 346788999999999999999999764321     11000 0000000000000  


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHH---HHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hh
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMI---RSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HL  230 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~  230 (373)
                             +...........+......   ... ..+++-++|+|+++..  .....++..+....+.+.+|++|.+. .+
T Consensus        90 -------v~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL  162 (563)
T PRK06647         90 -------VIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL  162 (563)
T ss_pred             -------eEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence                   0000000001111211111   111 2355668999998643  44566666655444566676666543 22


Q ss_pred             Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      ...+ .....+++.+++.++....+...+......  ..++.+..|++.++|.+..+..+
T Consensus       163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~alsl  220 (563)
T PRK06647        163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAYTL  220 (563)
T ss_pred             HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            2221 123468899999999998888766332222  33567888999999988655443

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.60  E-value=8.7e-07  Score=77.81  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=68.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS  185 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (373)
                      ...+.++|++|+||||+|+.++..+....  ....++. +   .    ...    +.....+.      ........+.+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~---~----~~~----l~~~~~g~------~~~~~~~~~~~  103 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V---E----RAD----LVGEYIGH------TAQKTREVIKK  103 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e---c----HHH----hhhhhccc------hHHHHHHHHHh
Confidence            46788999999999999999998754221  1111111 0   0    000    11111110      01111122222


Q ss_pred             hhCCCceEEEeccccc----------HHHHHHHhcCCCCCCCCcEEEEEeCChhh---H-----hhcCCCceEeCCCCCH
Q 017364          186 RLRHKKVLLVIDDVIE----------LQQLESLAGKHDWFGIGSRIFITSRDKHL---L-----MAHGVDEVYMHEHLNY  247 (373)
Q Consensus       186 ~l~~~~~LlvlDdv~~----------~~~l~~l~~~~~~~~~g~~iliTtR~~~~---~-----~~~~~~~~~~l~~L~~  247 (373)
                      .   ...+|++|+++.          .+.+..+............+++++.....   .     -.......+.+++++.
T Consensus       104 a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~  180 (261)
T TIGR02881       104 A---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV  180 (261)
T ss_pred             c---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence            2   134889999974          23445555544332333445555543221   0     0111234688999999


Q ss_pred             hHHHHHHHHhhc
Q 017364          248 DEALGLFCLKAF  259 (373)
Q Consensus       248 ~ea~~l~~~~~~  259 (373)
                      +|..+++...+.
T Consensus       181 ~el~~Il~~~~~  192 (261)
T TIGR02881       181 EELMEIAERMVK  192 (261)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.59  E-value=3e-06  Score=80.47  Aligned_cols=222  Identities=18%  Similarity=0.161  Sum_probs=121.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccc--eEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEA--SCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS  185 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (373)
                      ...+.|+|++|+|||+|++.+++.+...++.  ++++. ...         +...+...+..      ..    ...+.+
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~---------~~~~~~~~~~~------~~----~~~~~~  207 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEK---------FTNDFVNALRN------NT----MEEFKE  207 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHH---------HHHHHHHHHHc------Cc----HHHHHH
Confidence            3568999999999999999999988765432  23332 211         11222222211      01    122333


Q ss_pred             hhCCCceEEEecccccHH----HHHHHhc---CCCCCCCCcEEEEEeCChh---------hHhhcCCCceEeCCCCCHhH
Q 017364          186 RLRHKKVLLVIDDVIELQ----QLESLAG---KHDWFGIGSRIFITSRDKH---------LLMAHGVDEVYMHEHLNYDE  249 (373)
Q Consensus       186 ~l~~~~~LlvlDdv~~~~----~l~~l~~---~~~~~~~g~~iliTtR~~~---------~~~~~~~~~~~~l~~L~~~e  249 (373)
                      .+. +.-+|+|||++...    ..+.+..   .+.  ..|..+|+||....         +...+.....+.+++++.++
T Consensus       208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~  284 (450)
T PRK00149        208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALH--EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET  284 (450)
T ss_pred             HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence            333 34589999995321    1122221   111  12445777776542         12233344578999999999


Q ss_pred             HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCHHHHHHHHHHhcC-C----CCchH
Q 017364          250 ALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTIAEWESALQRLER-D----PENEI  316 (373)
Q Consensus       250 a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~~~~~~~l~~l~~-~----~~~~i  316 (373)
                      -.++++..+....  ..-.+++.+.|++.+.|....|.-+-..+      .+  -+....+.++..+.. .    ..+.+
T Consensus       285 r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~~~~~~~i  362 (450)
T PRK00149        285 RIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENI  362 (450)
T ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCCCCCHHHH
Confidence            9999988874322  12345678899999998887654443332      12  245566666765421 1    11233


Q ss_pred             HHHHHhch----hCCc--------hhhHHHHhhhcccCCCCCHHHHHHHH
Q 017364          317 LDVLQISF----DGLK--------ETEKKIFLDIACFYKGKYIDYVTKIL  354 (373)
Q Consensus       317 ~~~l~~s~----~~L~--------~~~~~~l~~la~f~~~~~~~~l~~l~  354 (373)
                      ..++...|    ++|-        ...|++..|++-=--+.+...+-+.+
T Consensus       363 ~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~f  412 (450)
T PRK00149        363 QKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAF  412 (450)
T ss_pred             HHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHc
Confidence            33333333    2220        14677777777644444444444444

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=4.2e-07  Score=81.73  Aligned_cols=148  Identities=16%  Similarity=0.273  Sum_probs=77.4

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-------cc-ceEEEee-ch-hhhcccCHHH
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-------FE-ASCFLAN-VR-EISKKSGLVF  156 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------f~-~~~~~~~-~~-~~~~~~~~~~  156 (373)
                      |-|....+..+..-+.-+    ..|+|+||+|+|||||.+.+...+.+.       .. .+-|+.. .. ..........
T Consensus       596 y~gqkpLFkkldFGiDmd----SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~E  671 (807)
T KOG0066|consen  596 YPGQKPLFKKLDFGIDMD----SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVE  671 (807)
T ss_pred             CCCCCchhhccccccccc----ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHH
Confidence            445555666666555544    679999999999999999999765332       11 2223211 00 0111112211


Q ss_pred             HHHH-----------HHHHH-hCCCCCC-----CcchhhhHHHHHHhhCCCceEEEecc------cccHHHHHHHhcCCC
Q 017364          157 LQKQ-----------LISQL-LNLPDSG-----VWNVYDGMNMIRSRLRHKKVLLVIDD------VIELQQLESLAGKHD  213 (373)
Q Consensus       157 ~~~~-----------~~~~~-~~~~~~~-----~~~~~~~~~~l~~~l~~~~~LlvlDd------v~~~~~l~~l~~~~~  213 (373)
                      .+..           .+..+ +.....+     .+.-....-.+.+...+.+-+||||.      +++.+.+...+..+.
T Consensus       672 yLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~  751 (807)
T KOG0066|consen  672 YLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN  751 (807)
T ss_pred             HHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence            1111           11111 1111111     11112223345566667788999994      445556666666654


Q ss_pred             CCCCCcEEEEEeCChhhHhhcCCCceEeCCC
Q 017364          214 WFGIGSRIFITSRDKHLLMAHGVDEVYMHEH  244 (373)
Q Consensus       214 ~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~  244 (373)
                          |. ||+.|++..+.....+ ..+.++.
T Consensus       752 ----Gg-Vi~VsHDeRLi~eT~C-~LwVvE~  776 (807)
T KOG0066|consen  752 ----GG-VIMVSHDERLIVETDC-NLWVVEN  776 (807)
T ss_pred             ----Cc-EEEEecccceeeecCc-eEEEEcc
Confidence                55 8888898876555433 3444543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.55  E-value=3.7e-07  Score=90.39  Aligned_cols=39  Identities=23%  Similarity=0.462  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+..+    .+++|+|++|+|||||++.++....+.
T Consensus       334 il~~vsl~i~~G----e~~~l~G~NGsGKSTLlk~l~G~~~p~  372 (635)
T PRK11147        334 LVKDFSAQVQRG----DKIALIGPNGCGKTTLLKLMLGQLQAD  372 (635)
T ss_pred             EEcCcEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            344444444444    689999999999999999999876543

>PRK06620 hypothetical protein; Validated

Probab=98.55  E-value=1.8e-06  Score=73.17  Aligned_cols=139  Identities=15%  Similarity=0.031  Sum_probs=82.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      +.+.|+|++|+|||+|++.+++...     ..+....     ..     ..                         ....
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~~-----~~-----~~-------------------------~~~~   84 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKDI-----FF-----NE-------------------------EILE   84 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC-----CEEcchh-----hh-----ch-------------------------hHHh
Confidence            5689999999999999998776432     1222100     00     00                         0011


Q ss_pred             CCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChh-------hHhhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364          189 HKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKH-------LLMAHGVDEVYMHEHLNYDEALGLFCLKAF  259 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~  259 (373)
                       ..-+|++||++..+  .+-.+...+.  ..|..+|+|++...       +...+.....+.+++++.++...++.+.+.
T Consensus        85 -~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~  161 (214)
T PRK06620         85 -KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS  161 (214)
T ss_pred             -cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence             22478899997543  2333333222  23667888887542       223334455799999999998888877764


Q ss_pred             CCCCCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364          260 KSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF  292 (373)
Q Consensus       260 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  292 (373)
                      ...  ....+++.+-|++.+.|.--.+.-+-..
T Consensus       162 ~~~--l~l~~ev~~~L~~~~~~d~r~l~~~l~~  192 (214)
T PRK06620        162 ISS--VTISRQIIDFLLVNLPREYSKIIEILEN  192 (214)
T ss_pred             HcC--CCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence            221  1133567777888777766555544443

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.54  E-value=2.8e-05  Score=76.07  Aligned_cols=192  Identities=16%  Similarity=0.156  Sum_probs=106.1

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce----EEEe-echhhhcc--cCHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS----CFLA-NVREISKK--SGLVF  156 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~----~~~~-~~~~~~~~--~~~~~  156 (373)
                      -..++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+.......    |-.+ .+..+...  .++..
T Consensus        16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~   94 (614)
T PRK14971         16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE   94 (614)
T ss_pred             HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence            3579999999999999987652 246688999999999999999998764211000    0000 00000000  00000


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeC-Chh
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSR-DKH  229 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR-~~~  229 (373)
                               +.  .......+.....+...    +.+++-++|+|+++..  .....|+..+......+.+|++|. ...
T Consensus        95 ---------ld--~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k  163 (614)
T PRK14971         95 ---------LD--AASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK  163 (614)
T ss_pred             ---------ec--ccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence                     00  00001111111111111    1234558899998643  345555554443334566665554 333


Q ss_pred             hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          230 LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       230 ~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      +...+ .....+++.+++.++....+...+......  ...+.+..|++.++|...-+...
T Consensus       164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~al~~  222 (614)
T PRK14971        164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDALSI  222 (614)
T ss_pred             chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            33322 234578999999999999988766332221  23456888999999977644433

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.54  E-value=1.5e-05  Score=75.20  Aligned_cols=197  Identities=16%  Similarity=0.189  Sum_probs=105.6

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc----eEEE-eechhhhcccCHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA----SCFL-ANVREISKKSGLVFL  157 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~----~~~~-~~~~~~~~~~~~~~~  157 (373)
                      .-..++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.++..+...-..    .+-. .++..........  
T Consensus        15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d--   91 (451)
T PRK06305         15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD--   91 (451)
T ss_pred             CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc--
Confidence            34579999999999999987652 23668899999999999999999876432100    0000 0000000000000  


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHH-hhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhh
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRS-RLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLMA  233 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~  233 (373)
                          +..+.+........+......+.. -..+.+-++|+|+++..  .....+...+......+.+|++|.+. .+...
T Consensus        92 ----~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~t  167 (451)
T PRK06305         92 ----VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT  167 (451)
T ss_pred             ----eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchH
Confidence                000000000000111111111110 01245668899998643  33444444443333466666666443 22221


Q ss_pred             c-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 017364          234 H-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKV  288 (373)
Q Consensus       234 ~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~  288 (373)
                      + .....+++.+++.++....+...+-....  ....+.++.|++.++|.+.-+..
T Consensus       168 I~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~~  221 (451)
T PRK06305        168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAES  221 (451)
T ss_pred             HHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence            1 12357899999999999888776532221  12356688899999997754433

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.51  E-value=3.2e-05  Score=75.03  Aligned_cols=192  Identities=13%  Similarity=0.091  Sum_probs=105.4

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..++|.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+....+...  ..+       +.......+.
T Consensus        14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~--~pC-------~~C~~C~~i~   83 (559)
T PRK05563         14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG--EPC-------NECEICKAIT   83 (559)
T ss_pred             cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCC-------CccHHHHHHh
Confidence            34679999999999999998652 2467888999999999999999987542211000  000       0000000000


Q ss_pred             HHH----hCCCCCCCcchhhhHHHHHHh-----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hh
Q 017364          163 SQL----LNLPDSGVWNVYDGMNMIRSR-----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HL  230 (373)
Q Consensus       163 ~~~----~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~  230 (373)
                      ...    ..........++.. ..+...     ..++.-++|+|+++.  ......++..+......+.+|++|.+. .+
T Consensus        84 ~g~~~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki  162 (559)
T PRK05563         84 NGSLMDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKI  162 (559)
T ss_pred             cCCCCCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence            000    00000000111111 111111     134566889999874  344555555444333455555555433 22


Q ss_pred             Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364          231 LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK  287 (373)
Q Consensus       231 ~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~  287 (373)
                      ...+ .....+.+.+++.++....+...+......  ...+.+..|++.++|.+..+.
T Consensus       163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~al  218 (559)
T PRK05563        163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDAL  218 (559)
T ss_pred             cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence            2221 123568899999999998887766332222  224567888889988876443

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.51  E-value=4.4e-06  Score=84.95  Aligned_cols=49  Identities=18%  Similarity=0.319  Sum_probs=41.4

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      -+.++||+.+++++...|.....  ..+.++|++|+|||+||+.++.++..
T Consensus       177 l~~vigr~~ei~~~i~iL~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~  225 (857)
T PRK10865        177 LDPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIIN  225 (857)
T ss_pred             CCcCCCCHHHHHHHHHHHhcCCc--CceEEECCCCCCHHHHHHHHHHHhhc
Confidence            35699999999999999876533  55779999999999999999998753

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.51  E-value=5.4e-06  Score=70.76  Aligned_cols=181  Identities=20%  Similarity=0.223  Sum_probs=103.6

Q ss_pred             ccccccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364           80 KSETLKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF  156 (373)
Q Consensus        80 ~~~~~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  156 (373)
                      +|..-..|||.+...+.+.-.+...   ....-.+.++||+|.||||||..+++.+...+.    +.........-    
T Consensus        21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~g----   92 (332)
T COG2255          21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPG----   92 (332)
T ss_pred             CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChh----
Confidence            3444567999998888887666532   233678999999999999999999998764321    11000011111    


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-HHHHH-hcCCCC--------CCCCcE------
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-QLESL-AGKHDW--------FGIGSR------  220 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~l~~l-~~~~~~--------~~~g~~------  220 (373)
                                           ++.. +...+.. .-+|.+|.++... ..+++ .+....        .+++++      
T Consensus        93 ---------------------Dlaa-iLt~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL  149 (332)
T COG2255          93 ---------------------DLAA-ILTNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL  149 (332)
T ss_pred             ---------------------hHHH-HHhcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence                                 1111 1111222 3356678775322 11111 111110        022222      


Q ss_pred             -----EEEEeCChhhHhhc--CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          221 -----IFITSRDKHLLMAH--GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       221 -----iliTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                           |=.|||...+...+  ...-+.+++-.+.+|-.+.+.+.+..-..  +...+.+.+|++...|-|.-..-+.+.+
T Consensus       150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRV  227 (332)
T COG2255         150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRV  227 (332)
T ss_pred             CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence                 33588865432221  12346678888999999999887733222  2335678999999999997666555554

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.50  E-value=7.3e-06  Score=78.73  Aligned_cols=158  Identities=13%  Similarity=0.134  Sum_probs=93.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc-c-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF-E-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR  186 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (373)
                      ..+.|+|..|+|||.|+..+++.+...+ . .++++. .         ..+...+...+..          .....+++.
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-a---------eef~~el~~al~~----------~~~~~f~~~  374 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-S---------EEFTNEFINSIRD----------GKGDSFRRR  374 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHHHHHHHHHHHh----------ccHHHHHHH
Confidence            4589999999999999999999876432 2 233332 1         1122222222111          012223333


Q ss_pred             hCCCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeCCh---------hhHhhcCCCceEeCCCCCHhHH
Q 017364          187 LRHKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSRDK---------HLLMAHGVDEVYMHEHLNYDEA  250 (373)
Q Consensus       187 l~~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR~~---------~~~~~~~~~~~~~l~~L~~~ea  250 (373)
                      +.+ .-+|+|||++..       +.+-.++..+.  ..|..||+||+..         .+...+.....+.|.+.+.+.-
T Consensus       375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR  451 (617)
T PRK14086        375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR  451 (617)
T ss_pred             hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence            333 357889999532       12222332222  2245588888753         2333344566889999999999


Q ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          251 LGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       251 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      .+++.+++......  ...++++-|++.+.++.-.|.-+..
T Consensus       452 ~aIL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~LegaL~  490 (617)
T PRK14086        452 IAILRKKAVQEQLN--APPEVLEFIASRISRNIRELEGALI  490 (617)
T ss_pred             HHHHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence            99998887443222  3356788888888877666554443

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.50  E-value=3.6e-05  Score=75.34  Aligned_cols=197  Identities=14%  Similarity=0.073  Sum_probs=106.4

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..++|.+...+.|..++..+. -.+.+.++|+.|+||||+|+.++..+-.......-..       ..+.....+.+..
T Consensus        15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~-------~Cg~C~~C~~i~~   86 (620)
T PRK14948         15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE-------PCGKCELCRAIAA   86 (620)
T ss_pred             HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC-------CCcccHHHHHHhc
Confidence            3568999999999999988652 2356789999999999999999997643211000000       0000001111100


Q ss_pred             HH----hCCCCCCCcchhhhHHHHHHh----hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHh
Q 017364          164 QL----LNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLM  232 (373)
Q Consensus       164 ~~----~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~  232 (373)
                      ..    ..........++...+.+...    +.+++-++|+|+++..  .....|+..+......+.+|++|.+.. +..
T Consensus        87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp  166 (620)
T PRK14948         87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP  166 (620)
T ss_pred             CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence            00    000000001111111111111    1245568899999743  445555554443334555555555442 222


Q ss_pred             hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          233 AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       233 ~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .+ .....+.+.+++.++....+...+......  ...+.+..|++.++|.+..+..+.
T Consensus       167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lL  223 (620)
T PRK14948        167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLL  223 (620)
T ss_pred             HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22 123568888999999888877655332111  223568889999999886554443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.50  E-value=3.8e-06  Score=85.67  Aligned_cols=152  Identities=9%  Similarity=0.083  Sum_probs=86.1

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      ..++||+.+++.+...|.....  ..+.++|++|+|||+++..++.++....      ...+|..+....          
T Consensus       173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l----------  240 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL----------  240 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH----------
Confidence            5699999999999999976543  4567899999999999999999875431      223333221111          


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH----------HHHHHhcCCCCCCCCcEEEEEeC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ----------QLESLAGKHDWFGIGSRIFITSR  226 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~----------~l~~l~~~~~~~~~g~~iliTtR  226 (373)
                         +.    .. ....+....+..+...+  .+++.+|++|+++...          ...-+.+.+.  .....+|.+|.
T Consensus       241 ---~a----~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt  310 (852)
T TIGR03346       241 ---IA----GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATT  310 (852)
T ss_pred             ---hh----cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCc
Confidence               00    00 00011122222222222  2468999999987432          1222222221  12234555555


Q ss_pred             ChhhHh-------hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          227 DKHLLM-------AHGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       227 ~~~~~~-------~~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ....-.       .......+.++.++.++...++....
T Consensus       311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~  349 (852)
T TIGR03346       311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK  349 (852)
T ss_pred             HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence            443211       01123467889899999999887553

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.48  E-value=2.5e-05  Score=76.03  Aligned_cols=198  Identities=15%  Similarity=0.195  Sum_probs=104.8

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEe-echhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLA-NVREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~~~~~~~~~  158 (373)
                      .-..+||.+...+.+...+..+. -.+.+.++|+.|+||||+|+.++..+......   .|-.+ .+..+.......   
T Consensus        14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d---   89 (576)
T PRK14965         14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD---   89 (576)
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC---
Confidence            34579999999999999887652 24667899999999999999999876422110   00000 000000000000   


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhc
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDK-HLLMAH  234 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~  234 (373)
                        ++ .+.+.......++.++...+... ..++.-++|+|+++..  .....|+..+......+.+|++|.+. .+...+
T Consensus        90 --~~-eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI  166 (576)
T PRK14965         90 --VF-EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI  166 (576)
T ss_pred             --ee-eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence              00 00000000001111111111111 1234558899998643  33445554443333456666655443 333221


Q ss_pred             -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364          235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL  289 (373)
Q Consensus       235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~  289 (373)
                       .....+++.+++.++....+...+......  ...+.+..|++.++|... ++..+
T Consensus       167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L  221 (576)
T PRK14965        167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL  221 (576)
T ss_pred             HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence             123568889999999988887655322211  234567889999998764 44444

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.48  E-value=2.5e-05  Score=70.14  Aligned_cols=195  Identities=12%  Similarity=0.053  Sum_probs=107.9

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc---------------ccceEEEeechhhh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE---------------FEASCFLANVREIS  149 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~~  149 (373)
                      ..++|.+...+.+...+..+. -.+...++|+.|+||+++|..++..+-..               ++...|+.......
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~   82 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ   82 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence            468899999999999988652 24789999999999999999999875322               22333332110000


Q ss_pred             cccCHHHHHHHHHHHHh-CCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEE
Q 017364          150 KKSGLVFLQKQLISQLL-NLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRI  221 (373)
Q Consensus       150 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~i  221 (373)
                      ........    ..... .......-.++. ++.+.+.+     .+++-++|+|+++..  .....++..+.... .+.+
T Consensus        83 g~~~~~~~----~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f  156 (314)
T PRK07399         83 GKLITASE----AEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL  156 (314)
T ss_pred             ccccchhh----hhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence            00000000    00000 000000011111 12233332     345668899988643  34444444443323 3456


Q ss_pred             EEEeCCh-hhHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          222 FITSRDK-HLLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       222 liTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      |++|.+. .+...+ .-...+.+.+++.++..+.+.......  .   .......++..++|.|.....+..
T Consensus       157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~~l~  223 (314)
T PRK07399        157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIANIE  223 (314)
T ss_pred             EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHHHHH
Confidence            6555544 333322 234688999999999999998764211  1   111246788999999976655444

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.46  E-value=5.1e-06  Score=82.75  Aligned_cols=152  Identities=13%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      +.++||+.+++.+...|.....  ..+.|+|++|+|||++|+.++..+....      +..+|..+.         .   
T Consensus       186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~---  251 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------G---  251 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------H---
Confidence            4699999999999998886433  4467899999999999999998764321      222332111         0   


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH----------HHHHHHh-cCCCCCCCCcEEEEEeC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL----------QQLESLA-GKHDWFGIGSRIFITSR  226 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------~~l~~l~-~~~~~~~~g~~iliTtR  226 (373)
                       .++.   +.  ....+....+..+...+ ...+.+|++|+++..          ..+..++ +.+.  ....++|.+|.
T Consensus       252 -~lla---G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt  323 (758)
T PRK11034        252 -SLLA---GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT  323 (758)
T ss_pred             -HHhc---cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence             1110   00  00112222222222222 345679999998642          1222222 2222  12344555554


Q ss_pred             ChhhHhh-------cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          227 DKHLLMA-------HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       227 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      .......       .+-...+.+++++.+++..++....
T Consensus       324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~  362 (758)
T PRK11034        324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  362 (758)
T ss_pred             hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence            4332110       1133579999999999999987553

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.46  E-value=2.4e-05  Score=68.30  Aligned_cols=198  Identities=15%  Similarity=0.091  Sum_probs=114.3

Q ss_pred             cCcccchh---hHHHHHHHHhcC-CCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-----EEEeechhhhcccCHH
Q 017364           85 KELVGLDS---RLEKLRFLINKG-PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-----CFLANVREISKKSGLV  155 (373)
Q Consensus        85 ~~~vGR~~---~~~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-----~~~~~~~~~~~~~~~~  155 (373)
                      +.+||...   .++.+..++... ....+.+.|+|.+|+|||++++.+...+...++..     +++.   +.....+..
T Consensus        34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~~~  110 (302)
T PF05621_consen   34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPDER  110 (302)
T ss_pred             CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCChH
Confidence            46788654   477777777643 34467899999999999999999998765443211     2221   245567778


Q ss_pred             HHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC-CCceEEEecccccHH------------HHHHHhcCCCCCCCCcEEE
Q 017364          156 FLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR-HKKVLLVIDDVIELQ------------QLESLAGKHDWFGIGSRIF  222 (373)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~------------~l~~l~~~~~~~~~g~~il  222 (373)
                      .+...++..+...... ..+...........++ -+.-+||+|++++.-            .++.+...+.    =+-|.
T Consensus       111 ~~Y~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~----ipiV~  185 (302)
T PF05621_consen  111 RFYSAILEALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ----IPIVG  185 (302)
T ss_pred             HHHHHHHHHhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC----CCeEE
Confidence            8888888886544322 2344444444444443 344588999996532            2333333332    23455


Q ss_pred             EEeCChhhHhhc-----CCCceEeCCCCCHh-HHHHHHHHh---hcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          223 ITSRDKHLLMAH-----GVDEVYMHEHLNYD-EALGLFCLK---AFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       223 iTtR~~~~~~~~-----~~~~~~~l~~L~~~-ea~~l~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      +-|++...+-..     +-...+.+++...+ +...|+...   ........-...+.+..|+..++|+.--+..+-
T Consensus       186 vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll  262 (302)
T PF05621_consen  186 VGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL  262 (302)
T ss_pred             eccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence            555543221110     12245566665543 344444322   222222223456789999999999876665544

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.45  E-value=5.5e-06  Score=76.63  Aligned_cols=173  Identities=16%  Similarity=0.154  Sum_probs=95.8

Q ss_pred             CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .+.|.+...+.+...+..           +-..++-+.|+|++|+|||+||+.+++.....|   +.+. ..        
T Consensus       146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~s--------  213 (398)
T PTZ00454        146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-GS--------  213 (398)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH--------
Confidence            467888777777765531           112357799999999999999999998754332   1111 10        


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~  216 (373)
                           .+.....+.      ........+.......+.+|+||+++...                .+..++..+..  ..
T Consensus       214 -----~l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~  282 (398)
T PTZ00454        214 -----EFVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT  282 (398)
T ss_pred             -----HHHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence                 011111111      01111122233335678999999976421                12333332221  12


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      .+..||.||...+....     ...+..+.++..+.++...+|+.+....... +.  -....++..+.|+.-
T Consensus       283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~d--vd~~~la~~t~g~sg  352 (398)
T PTZ00454        283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EE--VDLEDFVSRPEKISA  352 (398)
T ss_pred             CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cc--cCHHHHHHHcCCCCH
Confidence            35668888876543322     1345678999999999888887665332211 11  124566777766543

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.45  E-value=1.5e-05  Score=71.85  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             CCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCC
Q 017364          189 HKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHL-LMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKP  264 (373)
Q Consensus       189 ~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~  264 (373)
                      +++-++|+|+++.  ......++..+.....++.+|++|.+... ...+ .-...+.+.+++.+++.+.+......    
T Consensus       105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~----  180 (328)
T PRK05707        105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE----  180 (328)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc----
Confidence            3344567899874  44555555555443457778888887643 2222 22357899999999999998765311    


Q ss_pred             CchHHHHHHHHHHHhCCCchHHHHH
Q 017364          265 WKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       265 ~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                        ...+.+..++..++|.|+....+
T Consensus       181 --~~~~~~~~~l~la~Gsp~~A~~l  203 (328)
T PRK05707        181 --SDERERIELLTLAGGSPLRALQL  203 (328)
T ss_pred             --CChHHHHHHHHHcCCCHHHHHHH
Confidence              11234567788999999755444

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=98.45  E-value=2.7e-05  Score=65.68  Aligned_cols=177  Identities=16%  Similarity=0.153  Sum_probs=98.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHH----H
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNM----I  183 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l  183 (373)
                      .+++.++|.-|+|||.+++.+...+.++-...+.+.     .+......+...++..+...+..   ........    +
T Consensus        51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~---~~~~~~e~~~~~L  122 (269)
T COG3267          51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKV---NVNAVLEQIDREL  122 (269)
T ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccc---hhHHHHHHHHHHH
Confidence            369999999999999999965555543322332221     22233444455555555442222   22222222    2


Q ss_pred             HHhh-CCCc-eEEEeccccc--HHH---HHHHhcCCCCCCCCcEEEEEeCCh-------hhHhhc-CCCce-EeCCCCCH
Q 017364          184 RSRL-RHKK-VLLVIDDVIE--LQQ---LESLAGKHDWFGIGSRIFITSRDK-------HLLMAH-GVDEV-YMHEHLNY  247 (373)
Q Consensus       184 ~~~l-~~~~-~LlvlDdv~~--~~~---l~~l~~~~~~~~~g~~iliTtR~~-------~~~~~~-~~~~~-~~l~~L~~  247 (373)
                      .... ++++ +.+++|+.+.  ...   +.-|...-...+..-+|+..-...       ...... .-..+ |.++|++.
T Consensus       123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~  202 (269)
T COG3267         123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE  202 (269)
T ss_pred             HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence            2222 4555 8999998853  223   333333222222222344433322       111111 11223 89999999


Q ss_pred             hHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364          248 DEALGLFCLKAFKSHKP-WKGYEQLSKSVVKYAGGLPLALKVLGSF  292 (373)
Q Consensus       248 ~ea~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~~~~  292 (373)
                      ++...+++.+..+...+ +-...+....|.....|.|.+|..++..
T Consensus       203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~  248 (269)
T COG3267         203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL  248 (269)
T ss_pred             HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence            99999988776443322 2233466788999999999999988753

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.44  E-value=4.2e-05  Score=64.73  Aligned_cols=54  Identities=20%  Similarity=0.340  Sum_probs=41.9

Q ss_pred             ccccCcccchhhHHHHHHHHh---cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           82 ETLKELVGLDSRLEKLRFLIN---KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      .....++|.+.+.+.+.....   .+ ....-+.++|..|+|||+|++.+.+.+..+.
T Consensus        24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~G   80 (249)
T PF05673_consen   24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQG   80 (249)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence            445679999998887776543   22 2246788999999999999999999887654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.43  E-value=3.1e-06  Score=65.91  Aligned_cols=23  Identities=43%  Similarity=0.572  Sum_probs=21.2

Q ss_pred             EEEeccCCcchhHHHHHHHHHHh
Q 017364          111 IGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      |.|+|++|+|||++|+.+++.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            57999999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.43  E-value=3.9e-07  Score=86.76  Aligned_cols=145  Identities=21%  Similarity=0.303  Sum_probs=84.5

Q ss_pred             cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee--chhhhcccCHH------H----
Q 017364           89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN--VREISKKSGLV------F----  156 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~------~----  156 (373)
                      |-...++.+.-.+.++    ..++|+|.+|+|||||.+.+.....+..+.+.+..+  +....+.....      .    
T Consensus        14 g~~~l~~~~~l~~~~G----~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~   89 (530)
T COG0488          14 GDRPLLENVSLTLNPG----ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIE   89 (530)
T ss_pred             CCceeecCCcceeCCC----CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHh
Confidence            4444556666566666    779999999999999999999987666554444322  11111111100      0    


Q ss_pred             -------H-------------------------------------HHHHHHHHhCCCCC-----CCcchhhhHHHHHHhh
Q 017364          157 -------L-------------------------------------QKQLISQLLNLPDS-----GVWNVYDGMNMIRSRL  187 (373)
Q Consensus       157 -------~-------------------------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l  187 (373)
                             +                                     ...++.. ++....     ..+.-....-.|.+.|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~g-Lg~~~~~~~~~~LSGG~r~Rv~LA~aL  168 (530)
T COG0488          90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLG-LGFPDEDRPVSSLSGGWRRRVALARAL  168 (530)
T ss_pred             hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhc-CCCCcccCchhhcCHHHHHHHHHHHHH
Confidence                   0                                     0011111 111111     1111222344567777


Q ss_pred             CCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCCC
Q 017364          188 RHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHEH  244 (373)
Q Consensus       188 ~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~~  244 (373)
                      -.++=+|+||.-      ++..=++.++..++    | .+|++||++.+++.. +..++.++.
T Consensus       169 ~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~----g-tviiVSHDR~FLd~V-~t~I~~ld~  225 (530)
T COG0488         169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP----G-TVIVVSHDRYFLDNV-ATHILELDR  225 (530)
T ss_pred             hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC----C-cEEEEeCCHHHHHHH-hhheEEecC
Confidence            888899999954      34444566666655    6 599999999998876 555666653

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.43  E-value=8.3e-06  Score=79.93  Aligned_cols=49  Identities=27%  Similarity=0.356  Sum_probs=39.5

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..+.++|++..++.+...+....  ...++|+|++|+||||||+.+.+...
T Consensus       152 ~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       152 AFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             cHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            34568999999998887775432  36799999999999999999987653

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.43  E-value=2.2e-05  Score=67.83  Aligned_cols=185  Identities=14%  Similarity=0.149  Sum_probs=107.6

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc--cccceEEEeechhhhcccCHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH--EFEASCFLANVREISKKSGLVFLQK  159 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~  159 (373)
                      .....++|-+..++-+.+.+..  ...+....+||+|.|||+-|..++..+-.  -|++++.-.+.+   ...+..-...
T Consensus        33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS---derGisvvr~  107 (346)
T KOG0989|consen   33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS---DERGISVVRE  107 (346)
T ss_pred             CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc---ccccccchhh
Confidence            3446789999999999988876  34588999999999999999999987543  344444432222   1111111111


Q ss_pred             HH--HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh-c
Q 017364          160 QL--ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLLMA-H  234 (373)
Q Consensus       160 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~-~  234 (373)
                      .+  +..+......           ....-...--++|||++++.  +.|..+..........+++++.+..-..... .
T Consensus       108 Kik~fakl~~~~~~-----------~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi  176 (346)
T KOG0989|consen  108 KIKNFAKLTVLLKR-----------SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL  176 (346)
T ss_pred             hhcCHHHHhhcccc-----------ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence            10  1111110000           00000111248899999754  4566666555544556776666554332111 1


Q ss_pred             -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                       .....+..++|..++...-++..+-....  +...+..+.|++.++|--.
T Consensus       177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~GdLR  225 (346)
T KOG0989|consen  177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGDLR  225 (346)
T ss_pred             HhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHH
Confidence             12235778999999888888777643322  2345678889999988543

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.43  E-value=5.1e-06  Score=78.66  Aligned_cols=159  Identities=17%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-----ceEEEeechhh
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-----ASCFLANVREI  148 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~  148 (373)
                      ..+.|.+.+++.+...+..           +-..++-+.|+||+|+|||++|+.+++.+.....     ...|+. +.. 
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~-  259 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG-  259 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc-
Confidence            3467788888888776531           1122466999999999999999999998754421     222321 110 


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh-hCCCceEEEecccccHH--------------HHHHHhcCCC
Q 017364          149 SKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR-LRHKKVLLVIDDVIELQ--------------QLESLAGKHD  213 (373)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--------------~l~~l~~~~~  213 (373)
                        .        .++....+.   ............+.. ..+++++|+||+++..-              .+..++..+.
T Consensus       260 --~--------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD  326 (512)
T TIGR03689       260 --P--------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD  326 (512)
T ss_pred             --h--------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence              0        000000000   000011111112221 13578999999986421              1223333322


Q ss_pred             CC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          214 WF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       214 ~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ..  ..+..||.||.....+..     ...+..+.+++.+.++..++|..+.
T Consensus       327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l  378 (512)
T TIGR03689       327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL  378 (512)
T ss_pred             ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence            11  124445555544432221     1235568999999999999998876

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.42  E-value=5.9e-06  Score=74.86  Aligned_cols=147  Identities=17%  Similarity=0.209  Sum_probs=81.8

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ....++|.+...+.+...+..+. -+..+.++|++|+|||++|+.+++.....   ...+ +...    .. ....+..+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i-~~~~----~~-~~~i~~~l   88 (316)
T PHA02544         19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFV-NGSD----CR-IDFVRNRL   88 (316)
T ss_pred             cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEe-ccCc----cc-HHHHHHHH
Confidence            34678999999999998887542 34677779999999999999998876322   1122 1111    11 11111111


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH---HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hhc-CCC
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL---QQLESLAGKHDWFGIGSRIFITSRDKHLL-MAH-GVD  237 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~~-~~~  237 (373)
                      ......               . .+...+-++|+|+++..   .....+.........++.+|+||...... ..+ ...
T Consensus        89 ~~~~~~---------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~  152 (316)
T PHA02544         89 TRFAST---------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC  152 (316)
T ss_pred             HHHHHh---------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence            111000               0 01234568899998744   22222222122223467788888754321 111 122


Q ss_pred             ceEeCCCCCHhHHHHHHH
Q 017364          238 EVYMHEHLNYDEALGLFC  255 (373)
Q Consensus       238 ~~~~l~~L~~~ea~~l~~  255 (373)
                      ..+.++..+.++..+++.
T Consensus       153 ~~i~~~~p~~~~~~~il~  170 (316)
T PHA02544        153 RVIDFGVPTKEEQIEMMK  170 (316)
T ss_pred             eEEEeCCCCHHHHHHHHH
Confidence            467777888888776654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.42  E-value=2e-05  Score=74.14  Aligned_cols=150  Identities=16%  Similarity=0.093  Sum_probs=86.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      ..+.|+|++|+|||+|++.+++.+......++++. .         ..+...+...+...          ....++..+.
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------~~f~~~~~~~l~~~----------~~~~f~~~~~  201 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------ELFTEHLVSAIRSG----------EMQRFRQFYR  201 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H---------HHHHHHHHHHHhcc----------hHHHHHHHcc
Confidence            56889999999999999999998765444444442 1         11222222222110          1122333333


Q ss_pred             CCceEEEecccccHH-------HHHHHhcCCCCCCCCcEEEEEeCCh-h--------hHhhcCCCceEeCCCCCHhHHHH
Q 017364          189 HKKVLLVIDDVIELQ-------QLESLAGKHDWFGIGSRIFITSRDK-H--------LLMAHGVDEVYMHEHLNYDEALG  252 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g~~iliTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~  252 (373)
                       ..-+|++||+....       .+-.+...+.  ..|..+|+||... .        +...+.....+.+.+++.++..+
T Consensus       202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~  278 (445)
T PRK12422        202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS  278 (445)
T ss_pred             -cCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence             34588899985421       1222222111  1245688887542 1        12223344688999999999999


Q ss_pred             HHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          253 LFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       253 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      ++.+.+-....  ....++..-|+..+.++-
T Consensus       279 iL~~k~~~~~~--~l~~evl~~la~~~~~di  307 (445)
T PRK12422        279 FLERKAEALSI--RIEETALDFLIEALSSNV  307 (445)
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence            99887743221  233566777777777665

>CHL00176 ftsH cell division protein; Validated

Probab=98.41  E-value=1.5e-05  Score=78.06  Aligned_cols=180  Identities=15%  Similarity=0.174  Sum_probs=100.2

Q ss_pred             cCcccchhhHHHHHHHH---hcC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLI---NKG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l---~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.++..+.+...+   ...       ..-++-+.|+|++|+|||+||+.++......    ++..+...+      
T Consensus       183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p----~i~is~s~f------  252 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP----FFSISGSEF------  252 (638)
T ss_pred             HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----eeeccHHHH------
Confidence            45788777655555443   321       1124569999999999999999998865322    111111110      


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~--~~  216 (373)
                         .    ....+.      ........+.......+++|+|||++..                ..+..++.....  ..
T Consensus       253 ---~----~~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~  319 (638)
T CHL00176        253 ---V----EMFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN  319 (638)
T ss_pred             ---H----HHhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence               0    000000      1112233344455678899999999643                124444433221  12


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHHH
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALKVLG  290 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~  290 (373)
                      .+..||.||........     ...+..+.++..+.++-.++++.++.....   ........+++.+.| .+--|..+.
T Consensus       320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~sgaDL~~lv  396 (638)
T CHL00176        320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFSGADLANLL  396 (638)
T ss_pred             CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCCHHHHHHHH
Confidence            35556667766443221     123467889999999999999887743211   123345677777777 343444443

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.40  E-value=3.9e-06  Score=78.19  Aligned_cols=178  Identities=16%  Similarity=0.167  Sum_probs=98.4

Q ss_pred             CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .+.|.+.+++.+...+..           +-..+.-+.|+|++|+|||++|+.+++.....|-.   +. ...+      
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~-~seL------  253 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV-GSEL------  253 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee-cchh------
Confidence            356788888888876641           11234678899999999999999999977544311   11 0000      


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~  216 (373)
                             .....+.      ........+.....+.+.+|+||+++...                .+..++..+..  ..
T Consensus       254 -------~~k~~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~  320 (438)
T PTZ00361        254 -------IQKYLGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR  320 (438)
T ss_pred             -------hhhhcch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence                   0011110      01111222223334678899999875321                12222222211  12


Q ss_pred             CCcEEEEEeCChhhHhhc-----CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHH
Q 017364          217 IGSRIFITSRDKHLLMAH-----GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVL  289 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~  289 (373)
                      .+..||.||+....+...     .....+.+++.+.++..++|..+...-.... .  -....++..+.|+--| |..+
T Consensus       321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-d--vdl~~la~~t~g~sgAdI~~i  396 (438)
T PTZ00361        321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-D--VDLEEFIMAKDELSGADIKAI  396 (438)
T ss_pred             CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-C--cCHHHHHHhcCCCCHHHHHHH
Confidence            356788888766543321     2346789999999999999987663322111 1  1245566666665443 4443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.38  E-value=1.1e-06  Score=74.96  Aligned_cols=143  Identities=17%  Similarity=0.251  Sum_probs=77.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe----------echhhhcc----cCH----
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA----------NVREISKK----SGL----  154 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~----------~~~~~~~~----~~~----  154 (373)
                      .++.+.-.+..+    ..++|.||+|.|||||++.++.-+++.-+.+....          ...+.++.    .++    
T Consensus        19 vl~~i~l~v~~G----~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV   94 (254)
T COG1121          19 VLEDISLSVEKG----EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV   94 (254)
T ss_pred             eeeccEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence            556666555555    78999999999999999999986554422222110          00011110    000    


Q ss_pred             H----------------------HHHHHHHHHH-----hCCCCCCCcchhhhHHHHHHhhCCCceEEEeccc------cc
Q 017364          155 V----------------------FLQKQLISQL-----LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDV------IE  201 (373)
Q Consensus       155 ~----------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv------~~  201 (373)
                      .                      ....+.++..     ....-...+.-....-.+.+.|.+.+-||+||+-      .+
T Consensus        95 ~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~  174 (254)
T COG1121          95 KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG  174 (254)
T ss_pred             HHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence            0                      1111222221     0001111112222234567778888999999953      33


Q ss_pred             HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          202 LQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       202 ~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      ...+-+++..+.  ..|..||++|+|-...... .+.++-|
T Consensus       175 ~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~-~D~vi~L  212 (254)
T COG1121         175 QKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY-FDRVICL  212 (254)
T ss_pred             HHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh-CCEEEEE
Confidence            444555555554  2388899999998765543 3444433

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.37  E-value=2.3e-05  Score=71.64  Aligned_cols=177  Identities=18%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             ccccCcccchhhH-HHHHHHHhcCC-CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH
Q 017364           82 ETLKELVGLDSRL-EKLRFLINKGP-TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK  159 (373)
Q Consensus        82 ~~~~~~vGR~~~~-~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  159 (373)
                      ...+.++|-...+ -.+...+.... .....+.|+|+.|.|||.|++.+.+......+....+.        ........
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y--------~~se~f~~  156 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY--------LTSEDFTN  156 (408)
T ss_pred             chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe--------ccHHHHHH
Confidence            3344556655432 23333333221 12578999999999999999999998877766443332        11122222


Q ss_pred             HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------HHHHHHhcCCCCCCCCcEEEEEeCCh----
Q 017364          160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------QQLESLAGKHDWFGIGSRIFITSRDK----  228 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------~~l~~l~~~~~~~~~g~~iliTtR~~----  228 (373)
                      .+...+..          .....+++..  .--++++||++..       +.+-.+...+.  ..|..||+|++..    
T Consensus       157 ~~v~a~~~----------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l  222 (408)
T COG0593         157 DFVKALRD----------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKEL  222 (408)
T ss_pred             HHHHHHHh----------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhh
Confidence            22222211          1234455555  3448889998532       12222222222  2344788888643    


Q ss_pred             -----hhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 017364          229 -----HLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL  282 (373)
Q Consensus       229 -----~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  282 (373)
                           .+...+...-.+.+.+++.+....++.+.+-.....  ..+++..-++.....+
T Consensus       223 ~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~--i~~ev~~~la~~~~~n  279 (408)
T COG0593         223 NGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE--IPDEVLEFLAKRLDRN  279 (408)
T ss_pred             ccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhcc
Confidence                 233445566789999999999999998866332211  2234444444444433

>PRK12377 putative replication protein; Provisional

Probab=98.34  E-value=1.5e-05  Score=68.68  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=28.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ..+.|+|++|+|||+||..+++.+......+.++.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~  136 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT  136 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            56899999999999999999998876554455543

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.32  E-value=1.3e-05  Score=74.52  Aligned_cols=135  Identities=20%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCC
Q 017364           91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPD  170 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (373)
                      ...+.++...+....   .+++|.||-++|||||++.+.....+.   .+++.............+.             
T Consensus        23 ~~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~-------------   83 (398)
T COG1373          23 RKLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDL-------------   83 (398)
T ss_pred             HhhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHH-------------
Confidence            344555555554441   299999999999999997777665544   4444322111111111111             


Q ss_pred             CCCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh------cCCCceEeCCC
Q 017364          171 SGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA------HGVDEVYMHEH  244 (373)
Q Consensus       171 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~------~~~~~~~~l~~  244 (373)
                               ...+......++..++||.|.....|...+..+-..++. ++++|+-+......      .+-...+.+-|
T Consensus        84 ---------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P  153 (398)
T COG1373          84 ---------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP  153 (398)
T ss_pred             ---------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence                     111111112267899999999999888877776554555 78888887654322      12345789999


Q ss_pred             CCHhHHHHHH
Q 017364          245 LNYDEALGLF  254 (373)
Q Consensus       245 L~~~ea~~l~  254 (373)
                      |+..|-..+.
T Consensus       154 lSF~Efl~~~  163 (398)
T COG1373         154 LSFREFLKLK  163 (398)
T ss_pred             CCHHHHHhhc
Confidence            9999997763

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.32  E-value=2e-05  Score=75.73  Aligned_cols=180  Identities=16%  Similarity=0.198  Sum_probs=96.6

Q ss_pred             cCcccchhhHHHHHHHHh---c-------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLIN---K-------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .+++|.+...+.+...+.   .       +...++-+.++||+|+|||+||+.++....-.    ++..+...       
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~----~~~i~~~~-------  123 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP----FFSISGSD-------  123 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC----eeeccHHH-------
Confidence            467887776555544332   1       12224568999999999999999998864322    11111100       


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~  216 (373)
                        +    .....+.      ........+.......+.+|+|||++...                .+..++.....  ..
T Consensus       124 --~----~~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~  191 (495)
T TIGR01241       124 --F----VEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN  191 (495)
T ss_pred             --H----HHHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence              0    1111110      11122233334445677899999985421                12233322211  12


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHH
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLG  290 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~  290 (373)
                      .+..||.||........     ...+..+.++..+.++-.+++...........   ......+++.+.|+ +--|..+.
T Consensus       192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~  268 (495)
T TIGR01241       192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL  268 (495)
T ss_pred             CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence            34456666655432211     13456789999999999999987763322111   12255788888774 34454444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.32  E-value=1.8e-05  Score=70.22  Aligned_cols=129  Identities=15%  Similarity=0.095  Sum_probs=69.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhcccc--ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEFE--ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      .+.++|++|+|||++|+.++..+.....  ...++..    +    ..    .+...+.+..      .......+.+. 
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~----~~----~l~~~~~g~~------~~~~~~~~~~a-  120 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----T----RD----DLVGQYIGHT------APKTKEILKRA-  120 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----c----HH----HHhHhhcccc------hHHHHHHHHHc-
Confidence            5889999999999999998887643211  1122210    1    01    1122222211      11111222222 


Q ss_pred             CCCceEEEecccccH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhh--------cCCCceEeCCCCCHh
Q 017364          188 RHKKVLLVIDDVIEL-----------QQLESLAGKHDWFGIGSRIFITSRDKHLLMA--------HGVDEVYMHEHLNYD  248 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~-----------~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~--------~~~~~~~~l~~L~~~  248 (373)
                        ..-+|+||+++..           +....+.........+.+||+++.....-..        ......+.+++++.+
T Consensus       121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e  198 (284)
T TIGR02880       121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA  198 (284)
T ss_pred             --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence              2358899998632           2233344333322345667776654321111        112457899999999


Q ss_pred             HHHHHHHHhhc
Q 017364          249 EALGLFCLKAF  259 (373)
Q Consensus       249 ea~~l~~~~~~  259 (373)
                      |..+++...+-
T Consensus       199 dl~~I~~~~l~  209 (284)
T TIGR02880       199 ELLVIAGLMLK  209 (284)
T ss_pred             HHHHHHHHHHH
Confidence            99999887763

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.31  E-value=1.8e-05  Score=68.07  Aligned_cols=49  Identities=18%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +..+......-..+...+.++|++|+|||+|+..+++.+......++++
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i  133 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII  133 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            4444444433222235689999999999999999999876654455554

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.1e-05  Score=70.17  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++.++||+|.|||+|++.+++.+.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            47899999999999999999999753

>CHL00181 cbbX CbbX; Provisional

Probab=98.27  E-value=0.00016  Score=64.18  Aligned_cols=130  Identities=15%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc-c-cceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE-F-EASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSR  186 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  186 (373)
                      ..+.++|++|+||||+|+.+++.+... + ...-|+..    +    ..    .+...+.+..      .......+.+.
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~----~~----~l~~~~~g~~------~~~~~~~l~~a  121 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T----RD----DLVGQYIGHT------APKTKEVLKKA  121 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c----HH----HHHHHHhccc------hHHHHHHHHHc
Confidence            458899999999999999998865322 1 11112210    1    01    1122221111      01111222222


Q ss_pred             hCCCceEEEecccccH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhHh--------hcCCCceEeCCCCCH
Q 017364          187 LRHKKVLLVIDDVIEL-----------QQLESLAGKHDWFGIGSRIFITSRDKHLLM--------AHGVDEVYMHEHLNY  247 (373)
Q Consensus       187 l~~~~~LlvlDdv~~~-----------~~l~~l~~~~~~~~~g~~iliTtR~~~~~~--------~~~~~~~~~l~~L~~  247 (373)
                       .  .-+|+||+++..           +....+.........+.+||+++.......        .-.....+.+++++.
T Consensus       122 -~--ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~  198 (287)
T CHL00181        122 -M--GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP  198 (287)
T ss_pred             -c--CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence             2  248899998642           233344333332234566777765432211        112455799999999


Q ss_pred             hHHHHHHHHhhc
Q 017364          248 DEALGLFCLKAF  259 (373)
Q Consensus       248 ~ea~~l~~~~~~  259 (373)
                      +|..+++...+-
T Consensus       199 ~el~~I~~~~l~  210 (287)
T CHL00181        199 EELLQIAKIMLE  210 (287)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887763

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.26  E-value=2.9e-06  Score=69.41  Aligned_cols=114  Identities=14%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe-echhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA-NVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      .+++|.|++|+|||||++.++....+..+.+.|-. ......+...                   .+.-....-.+.+.+
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~laral   86 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAAAL   86 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHHHH
Confidence            78999999999999999999987665433333311 0111111110                   111122233345556


Q ss_pred             CCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364          188 RHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE  243 (373)
Q Consensus       188 ~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~  243 (373)
                      ..++-++++|+..      +...+..++..... ..+..+|++|++....... ++..+.+.
T Consensus        87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~  146 (177)
T cd03222          87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE  146 (177)
T ss_pred             hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence            6677899999753      22223333322211 1125699999998766543 34555554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.25  E-value=2.1e-05  Score=69.92  Aligned_cols=201  Identities=17%  Similarity=0.183  Sum_probs=112.0

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCC-eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTD-VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .+.|.+|+.++..+..++-+.+.. +..|.|+|-.|.|||.+.+.+.+....   ..+|+....    -.....+...++
T Consensus         5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e----cft~~~lle~IL   77 (438)
T KOG2543|consen    5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE----CFTYAILLEKIL   77 (438)
T ss_pred             ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH----hccHHHHHHHHH
Confidence            357899999999999999876554 456799999999999999999987632   456765332    234455566666


Q ss_pred             HHHh-CCCCCCC-----cchhhhHHHHHH--hhC--CCceEEEecccccHHHHH-----HHhcCCCCC-CCCcEEEEEeC
Q 017364          163 SQLL-NLPDSGV-----WNVYDGMNMIRS--RLR--HKKVLLVIDDVIELQQLE-----SLAGKHDWF-GIGSRIFITSR  226 (373)
Q Consensus       163 ~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~LlvlDdv~~~~~l~-----~l~~~~~~~-~~g~~iliTtR  226 (373)
                      .... ...+...     .++...+..+.+  ...  ++.++|||||++...+.+     .+.....-. -+...|+....
T Consensus        78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~  157 (438)
T KOG2543|consen   78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP  157 (438)
T ss_pred             HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence            6652 1111111     122233333433  122  358999999997654322     221111100 12333333222


Q ss_pred             C--hhhHhhcCCC--ceEeCCCCCHhHHHHHHHHhhcCCCCC---CchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364          227 D--KHLLMAHGVD--EVYMHEHLNYDEALGLFCLKAFKSHKP---WKGYEQLSKSVVKYAGGLPLALKVLGSF  292 (373)
Q Consensus       227 ~--~~~~~~~~~~--~~~~l~~L~~~ea~~l~~~~~~~~~~~---~~~~~~~~~~i~~~~~g~Plal~~~~~~  292 (373)
                      .  ......++..  ..+.++.-+.+|...++.+...+....   ..-..-+..-++..|+ -+-.+..++..
T Consensus       158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~  229 (438)
T KOG2543|consen  158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL  229 (438)
T ss_pred             ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence            2  2222223332  356778899999999986544221110   0011123455566777 55566655544

>PLN03073 ABC transporter F family; Provisional

Probab=98.23  E-value=1.9e-05  Score=78.72  Aligned_cols=38  Identities=26%  Similarity=0.491  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ++.+...+..+    .+++|+|++|+|||||++.++..+.+.
T Consensus       525 l~~vsl~i~~G----e~i~LvG~NGsGKSTLLk~L~Gll~p~  562 (718)
T PLN03073        525 FKNLNFGIDLD----SRIAMVGPNGIGKSTILKLISGELQPS  562 (718)
T ss_pred             EeccEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            44444444444    789999999999999999999876543

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.23  E-value=1.2e-06  Score=75.60  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcc-----hhhhHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWN-----VYDGMNM  182 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  182 (373)
                      ..++|.|++|+|||||++.+++.+.. +|+..+|+....+  ......++++.+...+..........     .......
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~   94 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK   94 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence            78999999999999999999998654 5778888764322  12456666666522221111111111     1111222


Q ss_pred             HHHh-hCCCceEEEecccccH
Q 017364          183 IRSR-LRHKKVLLVIDDVIEL  202 (373)
Q Consensus       183 l~~~-l~~~~~LlvlDdv~~~  202 (373)
                      .... -.++++++++|++...
T Consensus        95 a~~~~~~G~~vll~iDei~r~  115 (249)
T cd01128          95 AKRLVEHGKDVVILLDSITRL  115 (249)
T ss_pred             HHHHHHCCCCEEEEEECHHHh
Confidence            2222 2578999999998643

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=98.23  E-value=0.00014  Score=65.07  Aligned_cols=178  Identities=14%  Similarity=0.121  Sum_probs=94.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee-chhh--hcccCHHHHHHHHHHHHhC-CC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN-VREI--SKKSGLVFLQKQLISQLLN-LP  169 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~-~~  169 (373)
                      .+.+...+..+ .-+..+.++|+.|+||+++|..++..+-......+--.. +..+  ....++..         +. .+
T Consensus        13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~---------i~~~p   82 (319)
T PRK08769         13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL---------VSFIP   82 (319)
T ss_pred             HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE---------EecCC
Confidence            45555555543 224678999999999999999999875432111000000 0000  00000000         00 00


Q ss_pred             C--C----CCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-
Q 017364          170 D--S----GVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-  234 (373)
Q Consensus       170 ~--~----~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-  234 (373)
                      .  .    ..-.+++ +..+.+.+     .++.-++|+|+++.  ......++..+.....++.+|++|.+.. +...+ 
T Consensus        83 ~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr  161 (319)
T PRK08769         83 NRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR  161 (319)
T ss_pred             CcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence            0  0    0001111 12222222     24456889999874  3344555554443345777777777653 33222 


Q ss_pred             CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          235 GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       235 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .-...+.+.+++.+++.+.+....     ..   ...+..++..++|.|+....+.
T Consensus       162 SRCq~i~~~~~~~~~~~~~L~~~~-----~~---~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        162 SRCQRLEFKLPPAHEALAWLLAQG-----VS---ERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             hhheEeeCCCcCHHHHHHHHHHcC-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence            223578899999999999886532     11   2236678999999998665443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.22  E-value=7.1e-06  Score=66.76  Aligned_cols=137  Identities=20%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe--echhhhcccCHHHHHHHHHHHHhCCCCC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA--NVREISKKSGLVFLQKQLISQLLNLPDS  171 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.......+.+.|-.  ......+.....  ...+...+......
T Consensus        17 l~~i~l~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~   90 (166)
T cd03223          17 LKDLSFEIKPG----DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDD   90 (166)
T ss_pred             eecCeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc--cccHHHHhhccCCC
Confidence            33443334445    78999999999999999999987654433222210  011112211111  01112211110112


Q ss_pred             CCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364          172 GVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE  243 (373)
Q Consensus       172 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~  243 (373)
                      ..+.-....-.+.+.+-.++-++++|+..      ....+..++..+     +..+|++|++..... . +++.+.+.
T Consensus        91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~-~-~d~i~~l~  161 (166)
T cd03223          91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK-F-HDRVLDLD  161 (166)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh-h-CCEEEEEc
Confidence            22222333334555666777888999652      233343444332     356899999876543 2 55565553

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=7.6e-05  Score=65.98  Aligned_cols=171  Identities=15%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             ccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364           88 VGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF  156 (373)
Q Consensus        88 vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  156 (373)
                      =|-++++++|.....-.           -+.++=|.+|||+|.|||-||+.++++....     |+..+           
T Consensus       154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvv-----------  217 (406)
T COG1222         154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVV-----------  217 (406)
T ss_pred             cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEec-----------
Confidence            34667788888766421           1235679999999999999999999865433     33211           


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccHH----------------HHHHHhcCCCCC--CC
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIELQ----------------QLESLAGKHDWF--GI  217 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~--~~  217 (373)
                       ..++.....++.+       .++..+.+.- .+.+.+|.+|.++...                .+-+|+..+.-|  ..
T Consensus       218 -gSElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~  289 (406)
T COG1222         218 -GSELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG  289 (406)
T ss_pred             -cHHHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence             1123333333221       1222233322 4678999999885311                123333333211  24


Q ss_pred             CcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          218 GSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       218 g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      +.+||..|...+.+..     -..+..++++..+.+.-.+.|+-+..+-. ..++.  -.+.+++.|.|..-|
T Consensus       290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dv--d~e~la~~~~g~sGA  359 (406)
T COG1222         290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDV--DLELLARLTEGFSGA  359 (406)
T ss_pred             CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCc--CHHHHHHhcCCCchH
Confidence            5788887765544322     23567888887777777777776653322 11111  156788888887654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.18  E-value=2.3e-06  Score=73.29  Aligned_cols=38  Identities=39%  Similarity=0.632  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+..+    .+++|.||+|+|||||.+.++.-+++
T Consensus        17 il~~ls~~i~~G----~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          17 ILDDLSFSIPKG----EITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             EEecceEEecCC----cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            455555555555    89999999999999999999985543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.17  E-value=9.2e-06  Score=67.10  Aligned_cols=143  Identities=20%  Similarity=0.264  Sum_probs=71.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe-echhhhcc--cCHHHHHHHHHHHH-----
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA-NVREISKK--SGLVFLQKQLISQL-----  165 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~-----  165 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+.-+.+.|-. +.......  ........+++..+     
T Consensus        15 l~~~~~~i~~G----~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~   90 (180)
T cd03214          15 LDDLSLSIEAG----EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL   90 (180)
T ss_pred             EeeeEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence            33443334445    78999999999999999999987655433333321 11000000  00001111122221     


Q ss_pred             hCCCCCCCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCce
Q 017364          166 LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV  239 (373)
Q Consensus       166 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~  239 (373)
                      ........+.-....-.+.+.+-..+-++++|+..      +...+..++..+.. ..+..+|++|++....... ++..
T Consensus        91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~  168 (180)
T cd03214          91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRV  168 (180)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEE
Confidence            11111112222223334566666778899999753      23333333333221 1156799999988765443 3444


Q ss_pred             EeC
Q 017364          240 YMH  242 (373)
Q Consensus       240 ~~l  242 (373)
                      +.+
T Consensus       169 ~~l  171 (180)
T cd03214         169 ILL  171 (180)
T ss_pred             EEE
Confidence            444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.15  E-value=0.00013  Score=66.23  Aligned_cols=161  Identities=15%  Similarity=0.094  Sum_probs=85.7

Q ss_pred             Cccc-chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cce-EEEe-echhhhc--ccCHHHHH
Q 017364           86 ELVG-LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EAS-CFLA-NVREISK--KSGLVFLQ  158 (373)
Q Consensus        86 ~~vG-R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~-~~~~-~~~~~~~--~~~~~~~~  158 (373)
                      ..+| -+...+.+...+..+. -++...++|+.|+|||++|+.+++.+-...  ... +=.+ .+..+..  ..++..  
T Consensus         6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~--   82 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL--   82 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE--
Confidence            3556 5666778888876542 246779999999999999999998753221  000 0000 0000000  000000  


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHh----hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSR----LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LL  231 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~  231 (373)
                             . .........++........    ..+.+-++|+|+++.  ......++..+.....++.+|++|.+.. +.
T Consensus        83 -------i-~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll  154 (329)
T PRK08058         83 -------V-APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL  154 (329)
T ss_pred             -------e-ccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence                   0 0000001112221111111    234455788998864  3345555555544455777777777653 22


Q ss_pred             hhc-CCCceEeCCCCCHhHHHHHHHHh
Q 017364          232 MAH-GVDEVYMHEHLNYDEALGLFCLK  257 (373)
Q Consensus       232 ~~~-~~~~~~~l~~L~~~ea~~l~~~~  257 (373)
                      ..+ .....+++.+++.++..+.+...
T Consensus       155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        155 PTILSRCQVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence            222 23457899999999998888653

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.15  E-value=2.9e-05  Score=73.63  Aligned_cols=176  Identities=17%  Similarity=0.131  Sum_probs=91.0

Q ss_pred             cCcccchhhHHHHHHH---Hh-----cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364           85 KELVGLDSRLEKLRFL---IN-----KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF  156 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~---l~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  156 (373)
                      .++.|.+...+.+...   +.     .+-..++-+.++|++|+|||.+|+.+++...-.    ++..+...         
T Consensus       228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~---------  294 (489)
T CHL00195        228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGK---------  294 (489)
T ss_pred             HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHH---------
Confidence            4566766554444432   11     122234679999999999999999999876432    22211111         


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--------------HHHHHhcCCCCCCCCcEEE
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--------------QLESLAGKHDWFGIGSRIF  222 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------------~l~~l~~~~~~~~~g~~il  222 (373)
                          +.....+.      +.......+...-...+++|++|+++..-              .+..++..+.....+..||
T Consensus       295 ----l~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI  364 (489)
T CHL00195        295 ----LFGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV  364 (489)
T ss_pred             ----hcccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence                11000000      11111122222224578999999986321              1222222222122344456


Q ss_pred             EEeCChhhHh-----hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          223 ITSRDKHLLM-----AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       223 iTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      .||.+.....     ....+..+.++..+.++-.++|..+..+..... ........+++.+.|+.-
T Consensus       365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfSG  430 (489)
T CHL00195        365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFSG  430 (489)
T ss_pred             EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCCH
Confidence            6766553221     123456788999999999999987764422110 011224566666666543

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.15  E-value=0.00021  Score=72.12  Aligned_cols=180  Identities=13%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ..+.|.+...+.+...+.-           +-..++-+.++|++|+|||+||+.+++.....|    +.....       
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~-------  521 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGP-------  521 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehH-------
Confidence            3466777766666655431           112245689999999999999999999765322    111111       


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--------------HHHHHHhcCCCC--CCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--------------QQLESLAGKHDW--FGI  217 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--------------~~l~~l~~~~~~--~~~  217 (373)
                            .++....+.      +.......+...-...+.+|+||+++..              ..+..++..+..  ...
T Consensus       522 ------~l~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~  589 (733)
T TIGR01243       522 ------EILSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS  589 (733)
T ss_pred             ------HHhhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence                  111111111      1111222233333567899999998642              122333333321  123


Q ss_pred             CcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHHH
Q 017364          218 GSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVLG  290 (373)
Q Consensus       218 g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~  290 (373)
                      +..||.||........     ...+..+.++..+.++-.++|+.+........   ......+++.+.|+--| |..++
T Consensus       590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~~  665 (733)
T TIGR01243       590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAVC  665 (733)
T ss_pred             CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHHH
Confidence            4456666655543221     13456788999999999999976653221111   11256677788876533 44433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=3.7e-06  Score=67.39  Aligned_cols=45  Identities=31%  Similarity=0.527  Sum_probs=36.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +..+...+.++    ..+.|.|++|+|||||.+.++.-.++.-+.+.|-
T Consensus        18 f~~L~f~l~~G----e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~   62 (209)
T COG4133          18 FSDLSFTLNAG----EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ   62 (209)
T ss_pred             ecceeEEEcCC----CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence            44555556666    6799999999999999999999888877777775

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.13  E-value=6.1e-06  Score=74.65  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchh-----hhHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVY-----DGMNM  182 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  182 (373)
                      +..+|+|++|+|||||++.+++.+.. +|+..+|+..+.+.  ......+++.+...+............     ..+..
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~  247 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK  247 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            67889999999999999999998654 68888898755432  124555555554322211111111111     11111


Q ss_pred             HHHh-hCCCceEEEeccccc
Q 017364          183 IRSR-LRHKKVLLVIDDVIE  201 (373)
Q Consensus       183 l~~~-l~~~~~LlvlDdv~~  201 (373)
                      -... ..++.++|++|++..
T Consensus       248 Ae~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        248 AKRLVEHGKDVVILLDSITR  267 (416)
T ss_pred             HHHHHHcCCCEEEEEEChHH
Confidence            1221 267899999999864

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.12  E-value=6.9e-05  Score=75.62  Aligned_cols=174  Identities=18%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ..+.|.+..++.+...+..           +-...+-+.|+|++|+|||+||+.+++.....|   +.+ +.......  
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~--  251 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSK--  251 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhcc--
Confidence            3478999988888776631           112246789999999999999999998764332   111 11111000  


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcCCCCC-CCCc
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGKHDWF-GIGS  219 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~-~~g~  219 (373)
                                 ..+      .........+.....+.+.+|+||+++..             .....+...+... ..+.
T Consensus       252 -----------~~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~  314 (733)
T TIGR01243       252 -----------YYG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR  314 (733)
T ss_pred             -----------ccc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence                       000      01111222233333556789999998532             1122232222111 2233


Q ss_pred             EEEE-EeCChhhHh-h----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          220 RIFI-TSRDKHLLM-A----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       220 ~ili-TtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      .+++ +|....... .    ......+.++..+.++-.+++..........   .......+++.+.|..-
T Consensus       315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~---~d~~l~~la~~t~G~~g  382 (733)
T TIGR01243       315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA---EDVDLDKLAEVTHGFVG  382 (733)
T ss_pred             EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc---cccCHHHHHHhCCCCCH
Confidence            3444 444332111 1    1234567888889999888887554221111   11225667778877654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.12  E-value=3e-05  Score=75.51  Aligned_cols=52  Identities=23%  Similarity=0.347  Sum_probs=41.9

Q ss_pred             ccccCcccchhhHHHHHHHHhcCC---CCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGP---TDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .....++|-+..++.+..++....   ...++++|+|++|+||||+++.++..+.
T Consensus        81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            344679999999999999887532   2246799999999999999999998654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=98.11  E-value=0.00074  Score=61.85  Aligned_cols=195  Identities=17%  Similarity=0.138  Sum_probs=112.2

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHH-HHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH----
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLA-RVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ----  164 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  164 (373)
                      |.+.++.|..||....+  ..|+|.||.|+||+.|+ .++...-+    . +.+.+|..+....+-..+...+..+    
T Consensus         1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~r~----~-vL~IDC~~i~~ar~D~~~I~~lA~qvGY~   73 (431)
T PF10443_consen    1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKDRK----N-VLVIDCDQIVKARGDAAFIKNLASQVGYF   73 (431)
T ss_pred             CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhCCC----C-EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence            56778999999987765  78999999999999999 66655321    1 2222333222211111111111111    


Q ss_pred             -------------------HhCCCCCCCcchhhhHH--------HHHHh-------------------h---CCCceEEE
Q 017364          165 -------------------LLNLPDSGVWNVYDGMN--------MIRSR-------------------L---RHKKVLLV  195 (373)
Q Consensus       165 -------------------~~~~~~~~~~~~~~~~~--------~l~~~-------------------l---~~~~~Llv  195 (373)
                                         +.|....-..+.+..+.        .|++.                   +   ...+-++|
T Consensus        74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV  153 (431)
T PF10443_consen   74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV  153 (431)
T ss_pred             cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence                               12222211112111111        11110                   1   12356899


Q ss_pred             eccccc-----------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHh----hc--CCCceEeCCCCCHhHHHHHHHHhh
Q 017364          196 IDDVIE-----------LQQLESLAGKHDWFGIGSRIFITSRDKHLLM----AH--GVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       196 lDdv~~-----------~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~----~~--~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      +||+..           ..+|...+..    .+-.+||++|-+.....    .+  ...+.+.|...+++.|..+...+.
T Consensus       154 IdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L  229 (431)
T PF10443_consen  154 IDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL  229 (431)
T ss_pred             EcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence            999842           1234443333    23457888888764432    22  245678899999999999998887


Q ss_pred             cCCCCC-------------C-----chHHHHHHHHHHHhCCCchHHHHHHHHhcC
Q 017364          259 FKSHKP-------------W-----KGYEQLSKSVVKYAGGLPLALKVLGSFLFG  295 (373)
Q Consensus       259 ~~~~~~-------------~-----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~  295 (373)
                      ......             .     ..........++.+||--.-|..+++.++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks  284 (431)
T PF10443_consen  230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS  284 (431)
T ss_pred             cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence            442110             0     123445677888999999999999999865

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.10  E-value=1.4e-05  Score=62.79  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+.|+|++|+||||+++.++..+.......+++
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~   36 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI   36 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence            6789999999999999999999876654233443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08116 hypothetical protein; Validated

Probab=98.10  E-value=2e-05  Score=69.22  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .-+.|+|++|+|||+||..+++.+..+...++++
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~  148 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV  148 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            4588999999999999999999987654444444

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.09  E-value=5.7e-05  Score=73.47  Aligned_cols=39  Identities=31%  Similarity=0.569  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+.
T Consensus       334 ~l~~is~~i~~G----e~~~l~G~NGsGKSTLl~~i~G~~~p~  372 (530)
T PRK15064        334 LFKNLNLLLEAG----ERLAIIGENGVGKTTLLRTLVGELEPD  372 (530)
T ss_pred             eecCcEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            344444444444    789999999999999999999865443

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.09  E-value=1.3e-05  Score=65.65  Aligned_cols=137  Identities=20%  Similarity=0.294  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCC-CC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPD-SG  172 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  172 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+. ...+++... .....  ....... ......... ..
T Consensus        16 l~~~~~~i~~G----e~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~-~~~~~--~~~~~~~-i~~~~q~~~~~~   86 (173)
T cd03230          16 LDDISLTVEKG----EIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGK-DIKKE--PEEVKRR-IGYLPEEPSLYE   86 (173)
T ss_pred             eeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE-Ecccc--hHhhhcc-EEEEecCCcccc
Confidence            44444444445    789999999999999999998865443 233333211 00000  0000000 000000000 00


Q ss_pred             ---------CcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCC
Q 017364          173 ---------VWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD  237 (373)
Q Consensus       173 ---------~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~  237 (373)
                               .+.-....-.+.+.+..++-++++|+..      +...+..++..+.  ..|..+|++|++....... ++
T Consensus        87 ~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d  163 (173)
T cd03230          87 NLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CD  163 (173)
T ss_pred             CCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CC
Confidence                     1111122334566667788899999763      2233333333332  1256799999998766543 44


Q ss_pred             ceEeC
Q 017364          238 EVYMH  242 (373)
Q Consensus       238 ~~~~l  242 (373)
                      ..+.+
T Consensus       164 ~i~~l  168 (173)
T cd03230         164 RVAIL  168 (173)
T ss_pred             EEEEE
Confidence            45444

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.09  E-value=1.7e-05  Score=62.87  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      .+++|.|++|+|||||++.++...... ...+++.......--..                   .+.-....-.+.+.+.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral~   86 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLLL   86 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHHh
Confidence            789999999999999999998876543 33344321100000000                   1111122223455556


Q ss_pred             CCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          189 HKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       189 ~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      .++-++++|+..      +...+.+++...     +..+|++|++....... ++..+.+
T Consensus        87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l  140 (144)
T cd03221          87 ENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL  140 (144)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence            677789999753      233343444332     24699999988765443 3444444

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.08  E-value=6.8e-06  Score=67.19  Aligned_cols=126  Identities=15%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcc-cCHHHHHHHHHHHHhCC------CCCCCcchhhhHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKK-SGLVFLQKQLISQLLNL------PDSGVWNVYDGMN  181 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  181 (373)
                      .+++|.|++|+|||||.+.+...    .+.+.|.......... ..+.. ..+.+..+.-.      .....+.-....-
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~~-q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl   96 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFID-QLQFLIDVGLGYLTLGQKLSTLSGGELQRV   96 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEEh-HHHHHHHcCCCccccCCCcCcCCHHHHHHH
Confidence            78999999999999999988631    1111111110000000 00000 02233332111      0011111112223


Q ss_pred             HHHHhhCCC--ceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364          182 MIRSRLRHK--KVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE  243 (373)
Q Consensus       182 ~l~~~l~~~--~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~  243 (373)
                      .+.+.+-.+  +-++++|+..      ....+..++..+.  ..|..||++|++..... . ++.++.+.
T Consensus        97 ~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~-~-~d~i~~l~  162 (176)
T cd03238          97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLS-S-ADWIIDFG  162 (176)
T ss_pred             HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEC
Confidence            344555556  7788899752      2223333333221  13667999999987653 2 56666553

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.08  E-value=4.9e-05  Score=61.20  Aligned_cols=40  Identities=30%  Similarity=0.517  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++.+...+..+    ..+.|+|++|.|||||.+.++...++.
T Consensus        16 ~aL~~vs~~i~~G----ef~fl~GpSGAGKSTllkLi~~~e~pt   55 (223)
T COG2884          16 EALRDVSFHIPKG----EFVFLTGPSGAGKSTLLKLIYGEERPT   55 (223)
T ss_pred             hhhhCceEeecCc----eEEEEECCCCCCHHHHHHHHHhhhcCC
Confidence            3566666666666    789999999999999999999876554

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=6.4e-05  Score=70.75  Aligned_cols=173  Identities=17%  Similarity=0.131  Sum_probs=92.8

Q ss_pred             cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .++=|.+..+.++..++..          |-..++=|.+|||+|+|||.||+.+++.+.-.|-.+.    .         
T Consensus       190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is----A---------  256 (802)
T KOG0733|consen  190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS----A---------  256 (802)
T ss_pred             hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec----c---------
Confidence            4566788888887776642          1122466899999999999999999997653321110    0         


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHHhc---CCCC---C
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESLAG---KHDW---F  215 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~~---~~~~---~  215 (373)
                          -++.+.+.++      +.+.+.+.+.+.....++++++|+++...             .+.+|+.   .+..   .
T Consensus       257 ----peivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~  326 (802)
T KOG0733|consen  257 ----PEIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK  326 (802)
T ss_pred             ----hhhhcccCcc------cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence                1222222221      22333444555567789999999986311             1223332   2221   1


Q ss_pred             CCCcEEEE-EeCChhhH---hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          216 GIGSRIFI-TSRDKHLL---MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       216 ~~g~~ili-TtR~~~~~---~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      +.+..||- |+|...+-   .. -..++.|.+.-.+...-..+++..+-+-.... .+  ...+|++.+-|+-
T Consensus       327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~--d~~qlA~lTPGfV  396 (802)
T KOG0733|consen  327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DF--DFKQLAKLTPGFV  396 (802)
T ss_pred             CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-Cc--CHHHHHhcCCCcc
Confidence            23333333 44433221   11 12456777777777777777765553222111 11  1456666666653

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.00011  Score=72.20  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=74.3

Q ss_pred             cCcccchhhHHHHHHHHhcC------C-CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKG------P-TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      ...+|.+..++.+.+.+...      + .........||.|+|||.||+.++..+-..-...+-+. .   +.     -.
T Consensus       491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-M---SE-----y~  561 (786)
T COG0542         491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-M---SE-----YM  561 (786)
T ss_pred             cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-h---HH-----HH
Confidence            56999999999999888632      1 22467888999999999999999997754333333332 1   11     12


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCce-EEEecccc--cHHHHHHHhcCC
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKV-LLVIDDVI--ELQQLESLAGKH  212 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~--~~~~l~~l~~~~  212 (373)
                      .++-.+.+.+.++.-...-.  -..|-+..+.+|+ +++||+++  +++.++-|+..+
T Consensus       562 EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl  617 (786)
T COG0542         562 EKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL  617 (786)
T ss_pred             HHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence            23446666776665442221  2335555666765 89999996  455555554433

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.06  E-value=1.7e-05  Score=64.95  Aligned_cols=136  Identities=16%  Similarity=0.225  Sum_probs=69.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC--
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS--  171 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  171 (373)
                      ++.+...+.++    .+++|.|++|.|||||++.++.......+ .+++... .... .........+ .........  
T Consensus        18 l~~i~~~i~~G----~~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~-~~~~-~~~~~~~~~i-~~~~~~~~~~~   89 (171)
T cd03228          18 LKDVSLTIKPG----EKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGV-DLRD-LDLESLRKNI-AYVPQDPFLFS   89 (171)
T ss_pred             ccceEEEEcCC----CEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCE-Ehhh-cCHHHHHhhE-EEEcCCchhcc
Confidence            44444334445    78999999999999999999987655433 3333211 0000 0000000000 000000000  


Q ss_pred             -C-----CcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCce
Q 017364          172 -G-----VWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV  239 (373)
Q Consensus       172 -~-----~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~  239 (373)
                       .     .+.-....-.+.+.+-.++-++++|+..      +...+..++..+.   .+..||++|++......  ++..
T Consensus        90 ~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~  164 (171)
T cd03228          90 GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRI  164 (171)
T ss_pred             chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEE
Confidence             0     1111112223555566677899999753      2333444444332   24679999999877643  5555


Q ss_pred             EeC
Q 017364          240 YMH  242 (373)
Q Consensus       240 ~~l  242 (373)
                      +.+
T Consensus       165 ~~l  167 (171)
T cd03228         165 IVL  167 (171)
T ss_pred             EEE
Confidence            554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.05  E-value=7e-06  Score=66.56  Aligned_cols=134  Identities=17%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGV  173 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+.. ..+++... .... ......    .....+.. ...
T Consensus        16 l~~i~~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~v~~~g~-~~~~-~~~~~~----~~~~i~~~-~qL   83 (163)
T cd03216          16 LDGVSLSVRRG----EVHALLGENGAGKSTLMKILSGLYKPDS-GEILVDGK-EVSF-ASPRDA----RRAGIAMV-YQL   83 (163)
T ss_pred             EeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCE-ECCc-CCHHHH----HhcCeEEE-Eec
Confidence            33443334455    7899999999999999999998765443 33443211 1110 000000    00000000 001


Q ss_pred             cchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          174 WNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       174 ~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      +.-....-.+.+.+-..+-++++|+..      +...+..++..+.  ..+..+|++|++....... ++..+.+
T Consensus        84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l  155 (163)
T cd03216          84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL  155 (163)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            112222334555566677888999753      2223333333322  2356799999998755443 3444444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK08181 transposase; Validated

Probab=98.05  E-value=1.6e-05  Score=69.52  Aligned_cols=40  Identities=23%  Similarity=0.146  Sum_probs=30.3

Q ss_pred             HHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           99 FLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        99 ~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .++..+    ..+.|+|++|+|||.||..+++........+.|+
T Consensus       101 ~~~~~~----~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~  140 (269)
T PRK08181        101 SWLAKG----ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT  140 (269)
T ss_pred             HHHhcC----ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence            455544    5599999999999999999998876554445554

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.04  E-value=0.00066  Score=60.99  Aligned_cols=175  Identities=11%  Similarity=0.084  Sum_probs=94.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc---eEEEe-echhh--hcccCHHHHHHHHHHHHhC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA---SCFLA-NVREI--SKKSGLVFLQKQLISQLLN  167 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~  167 (373)
                      -+.+...+..+. -.....++|+.|+||+++|..++..+-...+.   .+=.. .+..+  ...+++..         ..
T Consensus        11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~---------i~   80 (325)
T PRK06871         11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI---------LE   80 (325)
T ss_pred             HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE---------Ec
Confidence            445555555431 24678899999999999999999876432110   00000 00000  00000000         00


Q ss_pred             CCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCc
Q 017364          168 LPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDE  238 (373)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~  238 (373)
                      ......-.+++.. .+.+.+     .++.=++|+|+++.  ......++..+....+++.+|++|.+.. +...+ .-..
T Consensus        81 p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~  159 (325)
T PRK06871         81 PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ  159 (325)
T ss_pred             cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence            0000011122221 122222     34555888999874  3445556655544456777888887663 33232 2245


Q ss_pred             eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .+.+.+++.++..+.+......   .    ...+...+..++|.|+..
T Consensus       160 ~~~~~~~~~~~~~~~L~~~~~~---~----~~~~~~~~~l~~g~p~~A  200 (325)
T PRK06871        160 TWLIHPPEEQQALDWLQAQSSA---E----ISEILTALRINYGRPLLA  200 (325)
T ss_pred             EEeCCCCCHHHHHHHHHHHhcc---C----hHHHHHHHHHcCCCHHHH
Confidence            7899999999999998765411   1    123566788999999633

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.04  E-value=0.00047  Score=62.50  Aligned_cols=176  Identities=13%  Similarity=0.068  Sum_probs=94.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEe-echhh--hcccCHHHHHHHHHHHHhC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLA-NVREI--SKKSGLVFLQKQLISQLLN  167 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~  167 (373)
                      -+.+...+..+ .-...+.++|+.|+||+++|..++..+-..-+   ..+=.. .+..+  ...+++..+        ..
T Consensus        11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p   81 (334)
T PRK07993         11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP   81 (334)
T ss_pred             HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence            44555555543 22477899999999999999999987632110   000000 00000  000000000        00


Q ss_pred             CCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCc
Q 017364          168 LPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDE  238 (373)
Q Consensus       168 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~  238 (373)
                      ......-.+++.. .+.+.+     .+++=++|+|+++.  ......++..+.....++.+|++|.+.. +...+ .-..
T Consensus        82 ~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq  160 (334)
T PRK07993         82 EKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR  160 (334)
T ss_pred             ccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence            0000011122221 122222     34556889998874  4455666665554456777777777654 33332 2234


Q ss_pred             eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .+.+.+++.+++.+.+.....    .   ..+.+..++..++|.|...
T Consensus       161 ~~~~~~~~~~~~~~~L~~~~~----~---~~~~a~~~~~la~G~~~~A  201 (334)
T PRK07993        161 LHYLAPPPEQYALTWLSREVT----M---SQDALLAALRLSAGAPGAA  201 (334)
T ss_pred             cccCCCCCHHHHHHHHHHccC----C---CHHHHHHHHHHcCCCHHHH
Confidence            688999999999988865421    1   1233677899999999643

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.02  E-value=1.6e-05  Score=65.13  Aligned_cols=126  Identities=18%  Similarity=0.169  Sum_probs=64.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC--------CcchhhhH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG--------VWNVYDGM  180 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  180 (373)
                      .+++|.|++|+|||||++.++....+..+. +.+... .... .........+ ..........        .+.-....
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~-~~~~-~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr  104 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGA-DISQ-WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR  104 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCE-Eccc-CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence            789999999999999999999876554333 333211 0100 0001110000 0000000000        11111122


Q ss_pred             HHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          181 NMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       181 ~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      -.+.+.+-.++-++++|+..      +...+..++..+.  ..|..||++|++..... . +++.+.+
T Consensus       105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l  168 (173)
T cd03246         105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL  168 (173)
T ss_pred             HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence            33555556677789999753      2333333333332  23667999999987664 3 5555554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.02  E-value=0.0015  Score=58.56  Aligned_cols=177  Identities=10%  Similarity=0.056  Sum_probs=94.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc--eEEE-eechhh--hcccCHHHHHHHHHHHHhCC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA--SCFL-ANVREI--SKKSGLVFLQKQLISQLLNL  168 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~  168 (373)
                      -+.+...+..+ .-.+.+.++|+.|+||+++|..+++.+-..-..  .+=. ..+..+  ...+++..+        ...
T Consensus        12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~   82 (319)
T PRK06090         12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE   82 (319)
T ss_pred             HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence            34455555433 224679999999999999999999875322110  0000 000000  000000000        000


Q ss_pred             CCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCce
Q 017364          169 PDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEV  239 (373)
Q Consensus       169 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~  239 (373)
                      .....-.+++. +.+.+.+     .++.=++|+|+++.  ......++..+....+++.+|++|.+.. +...+ .-...
T Consensus        83 ~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~  161 (319)
T PRK06090         83 KEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ  161 (319)
T ss_pred             cCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence            00001112222 1222222     23445888998874  3445556655544456777777777653 33332 23457


Q ss_pred             EeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       240 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      +.+.+++.+++.+.+.....     .     ....+...++|.|+....+.
T Consensus       162 ~~~~~~~~~~~~~~L~~~~~-----~-----~~~~~l~l~~G~p~~A~~~~  202 (319)
T PRK06090        162 WVVTPPSTAQAMQWLKGQGI-----T-----VPAYALKLNMGSPLKTLAMM  202 (319)
T ss_pred             EeCCCCCHHHHHHHHHHcCC-----c-----hHHHHHHHcCCCHHHHHHHh
Confidence            89999999999999865421     1     13467889999998765553

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.02  E-value=2.3e-05  Score=68.01  Aligned_cols=27  Identities=37%  Similarity=0.699  Sum_probs=23.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+.+.
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p~   52 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKPD   52 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence            789999999999999999999866544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.01  E-value=0.00045  Score=65.32  Aligned_cols=188  Identities=15%  Similarity=0.182  Sum_probs=107.3

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -.++||-+...+.|...+..+. -.......|+.|+||||+|+.++..+-..-...         ....+-....+.+..
T Consensus        15 F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~ePC~~C~~Ck~I~~   84 (515)
T COG2812          15 FDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------AEPCGKCISCKEINE   84 (515)
T ss_pred             HHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------CCcchhhhhhHhhhc
Confidence            3568999999999999998652 134577899999999999999998754321100         000000000011100


Q ss_pred             H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCChh-hH
Q 017364          164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRDKH-LL  231 (373)
Q Consensus       164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~  231 (373)
                      .    +..........+++ ++.+.+..     .++.=+.|+|+++  +...+..++..+.....+..+|+.|++.. +.
T Consensus        85 g~~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip  163 (515)
T COG2812          85 GSLIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP  163 (515)
T ss_pred             CCcccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence            0    00000000011111 11222222     3445588999996  45678888877765556777777777653 21


Q ss_pred             -hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          232 -MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       232 -~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                       +.......|.+..++.++-...+...+......  ...+....|.+..+|...
T Consensus       164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~R  215 (515)
T COG2812         164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLR  215 (515)
T ss_pred             hhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChh
Confidence             222334578999999999998888777433222  334556666677666443

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.01  E-value=2.3e-05  Score=64.58  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH--------------HHHHHHhCCCCCCCc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK--------------QLISQLLNLPDSGVW  174 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~  174 (373)
                      .+++|.|++|+|||||++.++.......+. +++... .....  ......              .+...+    ....+
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i----~~~LS  100 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNL----GRRFS  100 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhh----cccCC
Confidence            789999999999999999999876544333 333211 00000  000000              000000    01111


Q ss_pred             chhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          175 NVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       175 ~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      .-....-.+.+.+-.++-++++|+..      ....+..++..+.   .+..||++|++......  +++.+.+
T Consensus       101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l  169 (178)
T cd03247         101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIEH--MDKILFL  169 (178)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence            11222334555566777889999763      2233333333332   25679999999877642  4555554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00767 rho transcription termination factor Rho

Probab=98.00  E-value=9.5e-06  Score=73.76  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=57.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcch-----hhhHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNV-----YDGMNM  182 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  182 (373)
                      +.++|+|++|+|||||++.+++.+... |+..+|+....+  .......+++.+...+...........     ......
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~  246 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK  246 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence            779999999999999999999987655 777888864422  124566666666443322222111111     111112


Q ss_pred             HHHh-hCCCceEEEecccccH
Q 017364          183 IRSR-LRHKKVLLVIDDVIEL  202 (373)
Q Consensus       183 l~~~-l~~~~~LlvlDdv~~~  202 (373)
                      .... -.+++++|++|++...
T Consensus       247 Ae~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       247 AKRLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHHHcCCCeEEEEEChhHH
Confidence            2222 2678999999998643

Members of this family differ in the specificity of RNA binding.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.00012  Score=70.18  Aligned_cols=161  Identities=17%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      .+.|.|.|+.|+|||+|++++++.+..+....+-+..+...... .+..++..+                  ...+.+.+
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~-~~e~iQk~l------------------~~vfse~~  491 (952)
T KOG0735|consen  431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGS-SLEKIQKFL------------------NNVFSEAL  491 (952)
T ss_pred             cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccch-hHHHHHHHH------------------HHHHHHHH
Confidence            36689999999999999999999887554433333333322211 122222211                  22244556


Q ss_pred             CCCceEEEecccccHH---------------HHH----HHhcCCCCCCCCcEEEEEeCChhhHhh-----cCCCceEeCC
Q 017364          188 RHKKVLLVIDDVIELQ---------------QLE----SLAGKHDWFGIGSRIFITSRDKHLLMA-----HGVDEVYMHE  243 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~~---------------~l~----~l~~~~~~~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~  243 (373)
                      ...+-++||||++...               .+.    ++...+...+....+|.|.........     ......+.|+
T Consensus       492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~  571 (952)
T KOG0735|consen  492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP  571 (952)
T ss_pred             hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence            7788999999985311               122    222222211222344555544322111     1133467889


Q ss_pred             CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHH
Q 017364          244 HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVL  289 (373)
Q Consensus       244 ~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~  289 (373)
                      ++...+-.++++...-. .. .....+..+-+..+|+|+ |.-+.++
T Consensus       572 ap~~~~R~~IL~~~~s~-~~-~~~~~~dLd~ls~~TEGy~~~DL~if  616 (952)
T KOG0735|consen  572 APAVTRRKEILTTIFSK-NL-SDITMDDLDFLSVKTEGYLATDLVIF  616 (952)
T ss_pred             CcchhHHHHHHHHHHHh-hh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence            99888888877654422 21 112233344477788775 4444444

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=98.00  E-value=0.00097  Score=60.65  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=36.3

Q ss_pred             hhhHHHHHHHHhcCC-CCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           91 DSRLEKLRFLINKGP-TDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +...+.+.+.+.... ..+.+|+|.|+=|+||||+.+.+.+.+...
T Consensus         2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen    2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            445667777776543 557899999999999999999999988776

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.99  E-value=6.3e-05  Score=63.29  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             hhhHHHHHHhhCCCceEEEeccc----c--cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364          177 YDGMNMIRSRLRHKKVLLVIDDV----I--ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE  243 (373)
Q Consensus       177 ~~~~~~l~~~l~~~~~LlvlDdv----~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~  243 (373)
                      +...-.+.+.+-..+-+|+.|+-    +  +...+-.++..+.. ..|..||+.||+..++..  ++..+.+.
T Consensus       147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~--~dr~i~l~  216 (226)
T COG1136         147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKY--ADRVIELK  216 (226)
T ss_pred             HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence            33445677778888889999953    2  33333344333321 236679999999998875  55566554

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.98  E-value=4.9e-05  Score=61.81  Aligned_cols=28  Identities=36%  Similarity=0.591  Sum_probs=25.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      .+++|.|++|.||||+.+.++.-+.+.-
T Consensus        29 ei~GlLG~NGAGKTT~LRmiatlL~P~~   56 (245)
T COG4555          29 EITGLLGENGAGKTTLLRMIATLLIPDS   56 (245)
T ss_pred             eEEEEEcCCCCCchhHHHHHHHhccCCC
Confidence            8999999999999999999998776653

>TIGR00763 lon ATP-dependent protease La

Probab=97.98  E-value=0.00044  Score=70.16  Aligned_cols=52  Identities=21%  Similarity=0.443  Sum_probs=39.4

Q ss_pred             cCcccchhhHHHHHHHHh----cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           85 KELVGLDSRLEKLRFLIN----KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ...+|.+...+.+..++.    .+....+.+.++|++|+|||++|+.+++.+...|
T Consensus       320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~  375 (775)
T TIGR00763       320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF  375 (775)
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence            457888888888877553    1222336799999999999999999999876543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.97  E-value=6.2e-05  Score=73.59  Aligned_cols=39  Identities=28%  Similarity=0.543  Sum_probs=30.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+.
T Consensus       339 ~l~~isl~i~~G----e~~~l~G~NGsGKSTLl~~i~G~~~p~  377 (556)
T PRK11819        339 LIDDLSFSLPPG----GIVGIIGPNGAGKSTLFKMITGQEQPD  377 (556)
T ss_pred             eecceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            455555555555    789999999999999999999865543

>PRK06921 hypothetical protein; Provisional

Probab=97.97  E-value=2e-05  Score=69.09  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEe
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLA  143 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~  143 (373)
                      ...+.++|++|+|||+|+..+++.+... ...++|+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~  153 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP  153 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence            3678999999999999999999987665 44455554

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=97.97  E-value=0.0015  Score=59.10  Aligned_cols=91  Identities=15%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             CCceEEEecccc--cHHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCC
Q 017364          189 HKKVLLVIDDVI--ELQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKP  264 (373)
Q Consensus       189 ~~~~LlvlDdv~--~~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~  264 (373)
                      ++.=++|+|+++  +......++..+....+++.+|++|.+.+ +...+ .-...+.+.+++.++..+.+....    ..
T Consensus       131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~  206 (342)
T PRK06964        131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA  206 (342)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence            344588889886  44455666665554456777777766643 33232 233578999999999999987642    11


Q ss_pred             CchHHHHHHHHHHHhCCCchHHHHH
Q 017364          265 WKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       265 ~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                        .    ...+...++|.|+....+
T Consensus       207 --~----~~~~l~~~~Gsp~~Al~~  225 (342)
T PRK06964        207 --D----ADALLAEAGGAPLAALAL  225 (342)
T ss_pred             --h----HHHHHHHcCCCHHHHHHH
Confidence              1    223577889999744433

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.97  E-value=1.5e-05  Score=67.68  Aligned_cols=37  Identities=35%  Similarity=0.621  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        17 l~~vs~~i~~G----~~~~l~G~nGsGKSTLl~~l~G~~~~   53 (211)
T cd03225          17 LDDISLTIKKG----EFVLIVGPNGSGKSTLLRLLNGLLGP   53 (211)
T ss_pred             ecceEEEEcCC----cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444444445    78999999999999999999986543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.96  E-value=1.8e-05  Score=65.22  Aligned_cols=140  Identities=16%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhccc-CHHHHHHHHHHHHhCCCC-C
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKS-GLVFLQKQLISQLLNLPD-S  171 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~  171 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+... .+.+.+... ...... ........+ ..+..... .
T Consensus        16 l~~i~~~i~~G----~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~-~~~~~~~~~~~~~~~i-~~~~q~~~~~   88 (178)
T cd03229          16 LNDVSLNIEAG----EIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGE-DLTDLEDELPPLRRRI-GMVFQDFALF   88 (178)
T ss_pred             EeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCE-EccccchhHHHHhhcE-EEEecCCccC
Confidence            44444444455    789999999999999999999865443 233333211 010000 000000000 00000000 0


Q ss_pred             C-----------CcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364          172 G-----------VWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH  234 (373)
Q Consensus       172 ~-----------~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~  234 (373)
                      .           .+.-....-.+.+.+..++-++++|+..      +...+..++..... ..+..+|++|++.......
T Consensus        89 ~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~  167 (178)
T cd03229          89 PHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDLDEAARL  167 (178)
T ss_pred             CCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence            0           0111122233555566777899999652      23333343333221 1256799999998766543


Q ss_pred             CCCceEeC
Q 017364          235 GVDEVYMH  242 (373)
Q Consensus       235 ~~~~~~~l  242 (373)
                       +++++.+
T Consensus       168 -~d~i~~l  174 (178)
T cd03229         168 -ADRVVVL  174 (178)
T ss_pred             -cCEEEEE
Confidence             4555544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.96  E-value=3.8e-05  Score=65.37  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=30.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      -.++|.|++|+|||||+..+.......|..+++..
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t   48 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT   48 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence            46889999999999999999999888897776664

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=97.95  E-value=9.7e-06  Score=72.81  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+.+
T Consensus         9 l~~vs~~i~~G----e~~~l~G~NGaGKSTLl~~l~Gl~~p   45 (302)
T TIGR01188         9 VDGVNFKVREG----EVFGFLGPNGAGKTTTIRMLTTLLRP   45 (302)
T ss_pred             EeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444344445    78999999999999999999986544

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.93  E-value=7e-05  Score=60.50  Aligned_cols=34  Identities=29%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ++.|+|++|+||||++..++.........++|+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            3689999999999999999998766555566654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.93  E-value=3.9e-05  Score=63.48  Aligned_cols=27  Identities=33%  Similarity=0.646  Sum_probs=23.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++......
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~   53 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALFGLRPPA   53 (182)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            789999999999999999999866543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00032  Score=65.13  Aligned_cols=132  Identities=20%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHH
Q 017364          105 PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIR  184 (373)
Q Consensus       105 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  184 (373)
                      ......|.+.|++|+|||+||..++.  ...|+.+-.++.    ....++.+..+                .......+.
T Consensus       535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSp----e~miG~sEsaK----------------c~~i~k~F~  592 (744)
T KOG0741|consen  535 RSPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISP----EDMIGLSESAK----------------CAHIKKIFE  592 (744)
T ss_pred             cCcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeCh----HHccCccHHHH----------------HHHHHHHHH
Confidence            34467789999999999999999875  456777666531    11111111100                001111222


Q ss_pred             HhhCCCceEEEecccccHHH---------------HHHHhcCCCCCCCCcEEEEEeCChhhHhhcC----CCceEeCCCC
Q 017364          185 SRLRHKKVLLVIDDVIELQQ---------------LESLAGKHDWFGIGSRIFITSRDKHLLMAHG----VDEVYMHEHL  245 (373)
Q Consensus       185 ~~l~~~~~LlvlDdv~~~~~---------------l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~----~~~~~~l~~L  245 (373)
                      ...+..-.+||+||++..-+               +--++...+..+..--|+-||....++..++    ....+.++.+
T Consensus       593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl  672 (744)
T KOG0741|consen  593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL  672 (744)
T ss_pred             HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence            23344556899999865332               3333344443344444555777777776654    2357889999


Q ss_pred             CH-hHHHHHHHHhh
Q 017364          246 NY-DEALGLFCLKA  258 (373)
Q Consensus       246 ~~-~ea~~l~~~~~  258 (373)
                      +. ++..+.++..-
T Consensus       673 ~~~~~~~~vl~~~n  686 (744)
T KOG0741|consen  673 TTGEQLLEVLEELN  686 (744)
T ss_pred             CchHHHHHHHHHcc
Confidence            87 77777776554

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.93  E-value=3.4e-05  Score=65.79  Aligned_cols=37  Identities=32%  Similarity=0.626  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (216)
T TIGR00960        19 LDNLNFHITKG----EMVFLVGHSGAGKSTFLKLILGIEKP   55 (216)
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999986543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.92  E-value=3.5e-05  Score=64.59  Aligned_cols=111  Identities=14%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE-eechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL-ANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      ..+.|.|++|+||||++..++..+.......++. .+..+.... .    ...+..    ... ...+.......++..+
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~----~~~~i~----q~~-vg~~~~~~~~~i~~aL   71 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-S----KRSLIN----QRE-VGLDTLSFENALKAAL   71 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-C----ccceee----ecc-cCCCccCHHHHHHHHh
Confidence            4789999999999999999888776544333333 211110000 0    000000    000 0011223445567777


Q ss_pred             CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364          188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM  232 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~  232 (373)
                      ...+-++++|++.+.+.+........   .|..++.|++..+...
T Consensus        72 r~~pd~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~~~  113 (198)
T cd01131          72 RQDPDVILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSAAK  113 (198)
T ss_pred             cCCcCEEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcHHH
Confidence            77788999999987776655443322   2566888999876543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.92  E-value=4e-05  Score=64.30  Aligned_cols=41  Identities=34%  Similarity=0.541  Sum_probs=30.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE  137 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~  137 (373)
                      .++.+...+..|    .+++|+|++|+|||||++.++.-.++..+
T Consensus        22 ~l~~VS~~i~~G----e~lgivGeSGsGKSTL~r~l~Gl~~p~~G   62 (252)
T COG1124          22 ALNNVSLEIERG----ETLGIVGESGSGKSTLARLLAGLEKPSSG   62 (252)
T ss_pred             hhcceeEEecCC----CEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence            455555555555    78999999999999999999985554433

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.92  E-value=2.8e-05  Score=66.11  Aligned_cols=38  Identities=34%  Similarity=0.505  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        26 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~~   63 (214)
T PRK13543         26 VFGPLDFHVDAG----EALLVQGDNGAGKTTLLRVLAGLLHV   63 (214)
T ss_pred             eeecceEEECCC----CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            455555555555    78999999999999999999986543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.92  E-value=1.6e-05  Score=68.00  Aligned_cols=38  Identities=26%  Similarity=0.566  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        15 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~~   52 (220)
T cd03265          15 AVRGVSFRVRRG----EIFGLLGPNGAGKTTTIKMLTTLLKP   52 (220)
T ss_pred             eeeceeEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444555    78999999999999999999986543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.92  E-value=0.00043  Score=60.78  Aligned_cols=36  Identities=28%  Similarity=0.242  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+..+    ..+.|.|++|+|||+||+.++...
T Consensus        10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640        10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            455566666655    558899999999999999999755

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.92  E-value=3e-05  Score=65.48  Aligned_cols=37  Identities=38%  Similarity=0.657  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        16 l~~v~~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   52 (205)
T cd03226          16 LDDLSLDLYAG----EIIALTGKNGAGKTTLAKILAGLIKE   52 (205)
T ss_pred             eeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444444455    78999999999999999999986543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00016  Score=68.17  Aligned_cols=174  Identities=14%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      +.=|.+|||+|+|||-||+.+++...-.|-.+         ..        -+++....++      +.......+.+.-
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV---------KG--------PELlNkYVGE------SErAVR~vFqRAR  601 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV---------KG--------PELLNKYVGE------SERAVRQVFQRAR  601 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEee---------cC--------HHHHHHHhhh------HHHHHHHHHHHhh
Confidence            35588999999999999999999765443211         00        1223322222      1222333344444


Q ss_pred             CCCceEEEecccccH-------------HHHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCH
Q 017364          188 RHKKVLLVIDDVIEL-------------QQLESLAGKHDWF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNY  247 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~  247 (373)
                      ...+++|.||.++..             ..+..|+..+.-.  ..|..||-.|..++....     -..+..+.++..+.
T Consensus       602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~  681 (802)
T KOG0733|consen  602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA  681 (802)
T ss_pred             cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence            678999999988531             2345555444311  235556655554443221     23456788888899


Q ss_pred             hHHHHHHHHhhcCCCCCCchHHHHHHHHHH--HhCCCchHHHHHHHHhcCCCHHHHHHHHHH
Q 017364          248 DEALGLFCLKAFKSHKPWKGYEQLSKSVVK--YAGGLPLALKVLGSFLFGRTIAEWESALQR  307 (373)
Q Consensus       248 ~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~--~~~g~Plal~~~~~~l~~~~~~~~~~~l~~  307 (373)
                      +|-.++++........+. ...--.++|+.  +|.|+.-|  -++.+++..+...+++.+.+
T Consensus       682 ~eR~~ILK~~tkn~k~pl-~~dVdl~eia~~~~c~gftGA--DLaaLvreAsi~AL~~~~~~  740 (802)
T KOG0733|consen  682 EERVAILKTITKNTKPPL-SSDVDLDEIARNTKCEGFTGA--DLAALVREASILALRESLFE  740 (802)
T ss_pred             HHHHHHHHHHhccCCCCC-CcccCHHHHhhcccccCCchh--hHHHHHHHHHHHHHHHHHhh
Confidence            999999987774322221 11112455654  34465433  33444444444444444443

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=0.00086  Score=61.52  Aligned_cols=206  Identities=15%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             cccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccccc-e-EEEeechhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA-S-CFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~-~~~~~~~~~~~~~~~~~~~  158 (373)
                      .+...+||+.++..+..++...  .+..+.+.|.|.+|.|||.+...++.+....... . +++ ++..   -.....++
T Consensus       148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i-nc~s---l~~~~aiF  223 (529)
T KOG2227|consen  148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI-NCTS---LTEASAIF  223 (529)
T ss_pred             CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEE-eecc---ccchHHHH
Confidence            4567999999999999888642  2335779999999999999999999887665444 2 333 2221   13344455


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhhCC--CceEEEecccccHHH--HHHHhcCCCCC-CCCcEEEEEeCCh-----
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRLRH--KKVLLVIDDVIELQQ--LESLAGKHDWF-GIGSRIFITSRDK-----  228 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~--l~~l~~~~~~~-~~g~~iliTtR~~-----  228 (373)
                      ..+...+.......... .+....+...+.+  ..+|+|+|.+|....  -..+...+.|. -+++++|+.--..     
T Consensus       224 ~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT  302 (529)
T KOG2227|consen  224 KKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT  302 (529)
T ss_pred             HHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence            55555542222221111 3334444444433  358999998864331  01111111111 1255555433211     


Q ss_pred             -hhHhhcC-----CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364          229 -HLLMAHG-----VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF  294 (373)
Q Consensus       229 -~~~~~~~-----~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  294 (373)
                       .++..+.     .-..+..+|.+.++-.+++..+.-... .........+..++++.|.---+..+....+
T Consensus       303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R  373 (529)
T KOG2227|consen  303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALDVCR  373 (529)
T ss_pred             HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence             1122211     224677899999999999988873322 2223334555566666666655555554443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.91  E-value=3.3e-05  Score=65.70  Aligned_cols=38  Identities=32%  Similarity=0.614  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        14 ~l~~isl~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~p   51 (213)
T cd03235          14 VLEDVSFEVKPG----EFLAIVGPNGAGKSTLLKAILGLLKP   51 (213)
T ss_pred             eeecceeEEcCC----CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            344554445555    78999999999999999999886543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK10536 hypothetical protein; Provisional

Probab=97.91  E-value=6.1e-05  Score=64.54  Aligned_cols=53  Identities=13%  Similarity=0.149  Sum_probs=39.6

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH-H-hccccceEE
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL-I-SHEFEASCF  141 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~  141 (373)
                      ..+.+|......+...+...    ..+.+.|+.|+|||+||..++.. + ...|..++.
T Consensus        55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI  109 (262)
T PRK10536         55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV  109 (262)
T ss_pred             ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence            45677777777777777654    68999999999999999998885 3 334444443

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.91  E-value=0.00032  Score=56.71  Aligned_cols=43  Identities=30%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      |-+...+.+...+..+ .-+..+.++|+.|+||+++|..++..+
T Consensus         1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l   43 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL   43 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence            4456677777777655 224678999999999999999999875

...

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.90  E-value=0.00017  Score=66.68  Aligned_cols=37  Identities=35%  Similarity=0.632  Sum_probs=31.3

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..++.+...+.++    ..++|+||+|+|||||++.+..-.
T Consensus       350 pil~~isF~l~~G----~~lgIIGPSgSGKSTLaR~lvG~w  386 (580)
T COG4618         350 PILKGISFALQAG----EALGIIGPSGSGKSTLARLLVGIW  386 (580)
T ss_pred             cceecceeEecCC----ceEEEECCCCccHHHHHHHHHccc
Confidence            4577778788887    679999999999999999998744

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.90  E-value=2.1e-05  Score=67.35  Aligned_cols=36  Identities=28%  Similarity=0.563  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        16 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          16 LFGVSLTVPEG----EIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             eeeeeEEEcCC----eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    8899999999999999999987543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.90  E-value=0.00049  Score=70.33  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=39.2

Q ss_pred             cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|.+..++.+...+...      ++. ...+.++|++|+|||+||+.+++.+..
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~  624 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD  624 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence            46899999999888887632      112 247889999999999999999987643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.88  E-value=0.0013  Score=67.42  Aligned_cols=51  Identities=25%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++|.+..++.+...+...      +.. ...+.++|++|+|||++|+.++..+...
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~  622 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD  622 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            56899999999999888642      111 3568899999999999999999876543

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.87  E-value=2.5e-05  Score=67.36  Aligned_cols=37  Identities=24%  Similarity=0.521  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        15 ~l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          15 VVNGVSLSVKQG----EIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             eeccceeEecCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345555445555    7899999999999999999997543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.87  E-value=2.9e-05  Score=71.83  Aligned_cols=54  Identities=20%  Similarity=0.235  Sum_probs=42.3

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc--cccceEEE
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH--EFEASCFL  142 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~  142 (373)
                      .+.++.+..++.+...|..+    +.+.++|++|+|||++|+.+++.+..  .+..+.|+
T Consensus       175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V  230 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV  230 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence            45777788899999888866    56889999999999999999988643  23344444

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.87  E-value=0.0011  Score=59.59  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .-+..++||||+|+|||.+|+.++..+.-
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~  174 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGI  174 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence            34688999999999999999999998654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.87  E-value=0.00063  Score=68.61  Aligned_cols=49  Identities=27%  Similarity=0.458  Sum_probs=38.2

Q ss_pred             cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...+|.+..++.+...+...      +.+ ...+.++||+|+|||+||+.++..+.
T Consensus       454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~  509 (731)
T TIGR02639       454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG  509 (731)
T ss_pred             cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence            56889888888888777631      112 34688999999999999999998773

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=3.1e-05  Score=64.32  Aligned_cols=59  Identities=20%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             hHHHHHHhhCCCceEEEeccccc------HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCce
Q 017364          179 GMNMIRSRLRHKKVLLVIDDVIE------LQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEV  239 (373)
Q Consensus       179 ~~~~l~~~l~~~~~LlvlDdv~~------~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~  239 (373)
                      ....+.+.+--+|-+.|||..++      ...+......+.  ++|+.+|+.||...++.....+..
T Consensus       151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~v  215 (251)
T COG0396         151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKV  215 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEE
Confidence            34455666666788999997654      333333333333  346778899999988877655543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.86  E-value=4.8e-05  Score=61.26  Aligned_cols=122  Identities=20%  Similarity=0.285  Sum_probs=64.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      .+++|.|++|.|||||++.+...+... ...+++... .... ........    .+.-...  ...-....-.+.+.+.
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~-~~~~-~~~~~~~~----~i~~~~q--lS~G~~~r~~l~~~l~   96 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGK-DIAK-LPLEELRR----RIGYVPQ--LSGGQRQRVALARALL   96 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCE-Eccc-CCHHHHHh----ceEEEee--CCHHHHHHHHHHHHHh
Confidence            789999999999999999999876543 333443211 1100 00111100    0000000  1111222333555556


Q ss_pred             CCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          189 HKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       189 ~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      ..+-++++|+..      +...+..++....  ..+..++++|++....... +++.+.+
T Consensus        97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l  153 (157)
T cd00267          97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL  153 (157)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence            667899999763      2233333333332  1246799999998776654 4455544

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.86  E-value=1.5e-05  Score=73.44  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccc-----eEEEeechh-----------hhcc------cCHHHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEA-----SCFLANVRE-----------ISKK------SGLVFLQKQLISQLL  166 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~-----------~~~~------~~~~~~~~~~~~~~~  166 (373)
                      +..+++|++|+|||||.+.+++..-+-|+.     ..++.....           +...      .....+...++..+ 
T Consensus       107 rRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-  185 (582)
T KOG0062|consen  107 RRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-  185 (582)
T ss_pred             cccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-
Confidence            789999999999999999999833222322     111111000           0000      01111122122221 


Q ss_pred             CCCC-------CCCcchhhhHHHHHHhhCCCceEEEeccccc---HHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364          167 NLPD-------SGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE---LQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH  234 (373)
Q Consensus       167 ~~~~-------~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~---~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~  234 (373)
                      +..+       ...+.-....-.|.+++-.++=||+||.-.+   ...+..+...+.  ..+..+||.|+++.+++..
T Consensus       186 GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~--t~~~T~liVSHDr~FLn~V  261 (582)
T KOG0062|consen  186 GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQ--TWKITSLIVSHDRNFLNTV  261 (582)
T ss_pred             CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHh--hCCceEEEEeccHHHHHHH
Confidence            1111       1112222233456677777888999996543   233333333332  1135699999999877654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.85  E-value=5e-05  Score=63.51  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+.-.+.++    .+++|.|++|.|||||++.++...
T Consensus        24 ~l~~~~~~i~~G----e~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          24 LLKNVSGKAKPG----ELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             ceecceEEEcCC----cEEEEECCCCCCHHHHHHHHhCCC
Confidence            344454445555    789999999999999999999866

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.85  E-value=1.6e-05  Score=68.08  Aligned_cols=38  Identities=32%  Similarity=0.603  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        37 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~p   74 (224)
T cd03220          37 ALKDVSFEVPRG----ERIGLIGRNGAGKSTLLRLLAGIYPP   74 (224)
T ss_pred             EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444455    78999999999999999999986543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.85  E-value=6.6e-05  Score=63.66  Aligned_cols=25  Identities=36%  Similarity=0.655  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.85  E-value=8.9e-05  Score=62.70  Aligned_cols=36  Identities=33%  Similarity=0.579  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        18 l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         18 FSGLSFTLAAG----EALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999998644

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00016  Score=68.77  Aligned_cols=154  Identities=15%  Similarity=0.142  Sum_probs=85.3

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS  185 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (373)
                      +.++-|.++||+|+|||++|+.+++...-.|-.+         .        ..++++.+.+.      +...+.+.+.+
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------k--------gpEL~sk~vGe------SEr~ir~iF~k  522 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------K--------GPELFSKYVGE------SERAIREVFRK  522 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------c--------CHHHHHHhcCc------hHHHHHHHHHH
Confidence            3467899999999999999999999765443221         0        01222222221      11222223333


Q ss_pred             hhCCCceEEEecccccHH-------------HHHHHhcCCCCCCCC-cEEEEEeCCh-hhHhh-----cCCCceEeCCCC
Q 017364          186 RLRHKKVLLVIDDVIELQ-------------QLESLAGKHDWFGIG-SRIFITSRDK-HLLMA-----HGVDEVYMHEHL  245 (373)
Q Consensus       186 ~l~~~~~LlvlDdv~~~~-------------~l~~l~~~~~~~~~g-~~iliTtR~~-~~~~~-----~~~~~~~~l~~L  245 (373)
                      .-+-.+.++.||.++...             .+..++....-.... .-+|+...|+ +..+.     -+.+..+.+++.
T Consensus       523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP  602 (693)
T KOG0730|consen  523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP  602 (693)
T ss_pred             HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence            334567899999886422             244555444311112 2233322222 22111     125678888988


Q ss_pred             CHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          246 NYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       246 ~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      +.+.-.++|+.++-+-.... .  -..++|++.+.|+.-|
T Consensus       603 D~~aR~~Ilk~~~kkmp~~~-~--vdl~~La~~T~g~SGA  639 (693)
T KOG0730|consen  603 DLEARLEILKQCAKKMPFSE-D--VDLEELAQATEGYSGA  639 (693)
T ss_pred             cHHHHHHHHHHHHhcCCCCc-c--ccHHHHHHHhccCChH
Confidence            88889999988874322111 1  1256777777776544

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.84  E-value=0.00012  Score=61.68  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        23 l~~~s~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          23 LKDFSGVVKPG----EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             eeeEEEEECCC----cEEEEECCCCCCHHHHHHHhcccCC
Confidence            44444444445    7899999999999999999998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.84  E-value=2e-05  Score=67.03  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        15 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~p   52 (213)
T cd03259          15 ALDDLSLTVEPG----EFLALLGPSGCGKTTLLRLIAGLERP   52 (213)
T ss_pred             eecceeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444555    78999999999999999999986543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=7.4e-05  Score=65.36  Aligned_cols=37  Identities=27%  Similarity=0.547  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        17 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (255)
T PRK11248         17 LEDINLTLESG----ELLVVLGPSGCGKTTLLNLIAGFVPY   53 (255)
T ss_pred             EeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999986544

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.84  E-value=2.1e-05  Score=66.35  Aligned_cols=39  Identities=33%  Similarity=0.570  Sum_probs=29.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+.
T Consensus        16 ~l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~p~   54 (204)
T PRK13538         16 LFSGLSFTLNAG----ELVQIEGPNGAGKTSLLRILAGLARPD   54 (204)
T ss_pred             EEecceEEECCC----cEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            344444445555    789999999999999999999865443

>PRK06526 transposase; Provisional

Probab=97.84  E-value=5.2e-05  Score=65.89  Aligned_cols=33  Identities=24%  Similarity=0.105  Sum_probs=25.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ..+.|+|++|+|||+||..+..........+.|
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f  131 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF  131 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence            568999999999999999999876544333333

>PRK13409 putative ATPase RIL; Provisional

Probab=97.83  E-value=7.6e-05  Score=73.05  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=69.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcc------cCHHHH-------------HHHHHHHH----
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKK------SGLVFL-------------QKQLISQL----  165 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~------~~~~~~-------------~~~~~~~~----  165 (373)
                      .+++|.|++|+|||||++.++....+.-+.+.|-.......+.      ......             ..+++..+    
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~  445 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLER  445 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHH
Confidence            7899999999999999999998765443333221111101110      111111             11111111    


Q ss_pred             -hCCCCCCCcchhhhHHHHHHhhCCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCc
Q 017364          166 -LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDE  238 (373)
Q Consensus       166 -~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~  238 (373)
                       ........+.-....-.+.+.+...+-+++||+.      .+...+..++..+.. ..|..||++||+...+... ++.
T Consensus       446 ~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~-aDr  523 (590)
T PRK13409        446 LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYI-SDR  523 (590)
T ss_pred             HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CCE
Confidence             0011111111222233455666777889999964      233334444433311 1255699999998876654 455


Q ss_pred             eEeCCC
Q 017364          239 VYMHEH  244 (373)
Q Consensus       239 ~~~l~~  244 (373)
                      ++.+.+
T Consensus       524 vivl~~  529 (590)
T PRK13409        524 LMVFEG  529 (590)
T ss_pred             EEEEcC
Confidence            666553

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.83  E-value=5.8e-05  Score=68.01  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ..+.++|++|+|||+||..+++.+......++++.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t  218 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT  218 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            66999999999999999999998766555555554

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.83  E-value=2.5e-05  Score=66.76  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        17 il~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~   54 (220)
T cd03263          17 AVDDLSLNVYKG----EIFGLLGHNGAGKTTTLKMLTGELRP   54 (220)
T ss_pred             eecceEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            345555445555    78999999999999999999986543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.83  E-value=0.00042  Score=58.01  Aligned_cols=54  Identities=26%  Similarity=0.356  Sum_probs=40.7

Q ss_pred             ccCcccchhhHHHHHHHHh---cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc
Q 017364           84 LKELVGLDSRLEKLRFLIN---KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA  138 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~---~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~  138 (373)
                      -..++|.+...+.+.....   .+ -...-|.+||..|+|||+|++.+.+.+...+..
T Consensus        59 L~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr  115 (287)
T COG2607          59 LADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLR  115 (287)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence            3568998887777665433   22 123568999999999999999999998877655

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.83  E-value=0.001  Score=59.68  Aligned_cols=48  Identities=19%  Similarity=0.048  Sum_probs=34.4

Q ss_pred             eEeCCCCCHhHHHHHHHHhhcCCCCCC-chHHHHHHHHHHHhCCCchHH
Q 017364          239 VYMHEHLNYDEALGLFCLKAFKSHKPW-KGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .+++++++.+|+..++....-.+-... ...+...+++.-..+|||.-+
T Consensus       258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el  306 (309)
T PF10236_consen  258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL  306 (309)
T ss_pred             eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence            789999999999999987763332221 233455677777789999765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=97.83  E-value=2.3e-05  Score=70.46  Aligned_cols=39  Identities=31%  Similarity=0.577  Sum_probs=30.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    .+++|.|++|.|||||++.++..+.+.
T Consensus        22 ~l~~vsl~i~~G----ei~gllGpNGaGKSTLl~~l~Gl~~p~   60 (306)
T PRK13537         22 VVDGLSFHVQRG----ECFGLLGPNGAGKTTTLRMLLGLTHPD   60 (306)
T ss_pred             EEecceEEEeCC----cEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            455665555555    789999999999999999999865443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.83  E-value=0.00018  Score=59.34  Aligned_cols=40  Identities=30%  Similarity=0.464  Sum_probs=29.9

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+|--..++.+.-.+..+    .+++|+||+|+|||||.+.+-.
T Consensus        11 ~fg~~~VLkgi~l~v~~G----evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          11 SFGDKEVLKGISLSVEKG----EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EeCCeEEecCcceeEcCC----CEEEEECCCCCCHHHHHHHHHC
Confidence            344444566666555566    8899999999999999998754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.83  E-value=4.6e-05  Score=66.44  Aligned_cols=26  Identities=38%  Similarity=0.708  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++....+
T Consensus        31 e~~~I~G~NGsGKSTLl~~i~Gl~~p   56 (251)
T PRK09544         31 KILTLLGPNGAGKSTLVRVVLGLVAP   56 (251)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999999986544

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.83  E-value=2.6e-05  Score=68.17  Aligned_cols=38  Identities=32%  Similarity=0.550  Sum_probs=29.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        27 il~~isl~i~~G----e~~~I~G~NGsGKSTLlk~l~Gl~~p   64 (257)
T PRK11247         27 VLNQLDLHIPAG----QFVAVVGRSGCGKSTLLRLLAGLETP   64 (257)
T ss_pred             eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            455555445555    78999999999999999999986543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.82  E-value=2.6e-05  Score=65.80  Aligned_cols=40  Identities=33%  Similarity=0.524  Sum_probs=30.2

Q ss_pred             hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...++.+.-.+..+    ..|+|.|++|+|||||.+.++.-..+
T Consensus        16 ~~vl~~i~L~v~~G----EfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          16 VEVLEDINLSVEKG----EFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             eEEeccceeEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34455555555555    78999999999999999999975443

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=97.82  E-value=3.8e-05  Score=68.38  Aligned_cols=41  Identities=29%  Similarity=0.600  Sum_probs=32.9

Q ss_pred             hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ...++.+.-.+.++    .++++.|++|+|||||.+.++..+++.
T Consensus        18 ~~~l~~vs~~i~~G----ei~gllG~NGAGKTTllk~l~gl~~p~   58 (293)
T COG1131          18 KTALDGVSFEVEPG----EIFGLLGPNGAGKTTLLKILAGLLKPT   58 (293)
T ss_pred             CEEEeceeEEEcCC----eEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence            44566666666666    899999999999999999999876654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.82  E-value=0.00016  Score=70.74  Aligned_cols=39  Identities=28%  Similarity=0.553  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+..+    .+++|.|++|+|||||++.++....+.
T Consensus       337 ~l~~isl~i~~G----e~~~l~G~NGsGKSTLl~~l~G~~~p~  375 (552)
T TIGR03719       337 LIDDLSFKLPPG----GIVGVIGPNGAGKSTLFRMITGQEQPD  375 (552)
T ss_pred             eeccceEEEcCC----CEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence            455555444555    789999999999999999999865443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.82  E-value=0.00014  Score=62.28  Aligned_cols=25  Identities=44%  Similarity=0.777  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus         7 e~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         7 ELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999998644

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.81  E-value=0.0001  Score=63.24  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=28.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+..
T Consensus        24 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~   60 (224)
T TIGR02324        24 LKNVSLTVNAG----ECVALSGPSGAGKSTLLKSLYANYLP   60 (224)
T ss_pred             EecceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444555    78999999999999999999986544

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.81  E-value=5.1e-05  Score=64.96  Aligned_cols=136  Identities=19%  Similarity=0.207  Sum_probs=76.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEee-chhhhcccCHHHHHHHHHHHHh-----
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLAN-VREISKKSGLVFLQKQLISQLL-----  166 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----  166 (373)
                      .++.+...+..+    .+++|+|.+|+|||||++.+..-..+..+.+.|-.. ..... .........+++....     
T Consensus        28 avd~Vsf~i~~g----e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~  102 (268)
T COG4608          28 AVDGVSFSIKEG----ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEF  102 (268)
T ss_pred             EecceeEEEcCC----CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHH
Confidence            455555555556    789999999999999999999977766666555321 11111 1112222333333321     


Q ss_pred             -CCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH------HHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364          167 -NLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL------QQLESLAGKHDWFGIGSRIFITSRDKHLLMAH  234 (373)
Q Consensus       167 -~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~  234 (373)
                       ..-+.....-....-.+.+.+.-++-++|.|+..+.      .++-.++..+.. ..|...++.|++-.+...+
T Consensus       103 ~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i  176 (268)
T COG4608         103 LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI  176 (268)
T ss_pred             hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence             111111222222233466777888999999975321      222222222211 1256789999998877665

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.81  E-value=7.9e-05  Score=64.38  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        16 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~p   52 (235)
T cd03261          16 LKGVDLDVRRG----EILAIIGPSGSGKSTLLRLIVGLLRP   52 (235)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999976543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.81  E-value=0.00015  Score=61.75  Aligned_cols=37  Identities=27%  Similarity=0.502  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        17 l~~~sl~i~~G----~~~~i~G~nGsGKSTLl~~l~G~~~~   53 (214)
T cd03292          17 LDGINISISAG----EFVFLVGPSGAGKSTLLKLIYKEELP   53 (214)
T ss_pred             eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444344445    78999999999999999999986543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.80  E-value=5e-05  Score=75.27  Aligned_cols=40  Identities=33%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++.+...+.++    .+++|+|++|+|||||++.++....+.
T Consensus        15 ~~l~~vs~~i~~G----e~v~LvG~NGsGKSTLLkiL~G~~~pd   54 (638)
T PRK10636         15 VLLDNATATINPG----QKVGLVGKNGCGKSTLLALLKNEISAD   54 (638)
T ss_pred             eeecCcEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            3455555555555    789999999999999999999865543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.80  E-value=5.6e-05  Score=73.90  Aligned_cols=39  Identities=28%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+.++    .+++|+|++|+|||||++.++..+.+.
T Consensus        22 il~~vs~~i~~G----e~~~iiG~NGsGKSTLlk~i~G~~~p~   60 (556)
T PRK11819         22 ILKDISLSFFPG----AKIGVLGLNGAGKSTLLRIMAGVDKEF   60 (556)
T ss_pred             eeeCceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            455555555555    789999999999999999999876543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00011  Score=70.76  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=42.8

Q ss_pred             cCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccc
Q 017364           85 KELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEA  138 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~  138 (373)
                      .+-.|-++..++|...|.-    ..-..++++++||+|+|||+|++.++..+...|-.
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR  380 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR  380 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence            4577888888888887752    22335899999999999999999999988766543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.80  E-value=0.00025  Score=59.79  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    .+++|.|++|.|||||++.++......
T Consensus        20 il~~~s~~i~~G----~~~~i~G~nG~GKSTLl~~i~G~~~~~   58 (204)
T cd03250          20 TLKDINLEVPKG----ELVAIVGPVGSGKSSLLSALLGELEKL   58 (204)
T ss_pred             eeeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence            344555455555    789999999999999999999866544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09183 transposase/IS protein; Provisional

Probab=97.80  E-value=7.7e-05  Score=65.20  Aligned_cols=34  Identities=26%  Similarity=0.157  Sum_probs=25.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+.|+|++|+|||+|+..++.........+.++
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~  136 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT  136 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            5688999999999999999988755443333343

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.80  E-value=8.5e-05  Score=63.19  Aligned_cols=37  Identities=32%  Similarity=0.607  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        17 il~~is~~i~~G----~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        17 ALHDVSLHIRKG----EFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             eecceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345554445555    7899999999999999999987544

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.80  E-value=0.00091  Score=55.75  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=40.6

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .-.+.||-++.++++.-....+.  .+-+.|.||+|+||||-+..+++.+-
T Consensus        25 ~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~LL   73 (333)
T KOG0991|consen   25 VLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARELL   73 (333)
T ss_pred             HHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHHh
Confidence            33569999999999988777664  48899999999999998888887653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.79  E-value=2.7e-05  Score=69.96  Aligned_cols=38  Identities=37%  Similarity=0.681  Sum_probs=30.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 ~l~~vsl~i~~G----e~~~l~G~NGaGKSTLl~~l~Gl~~p   56 (303)
T TIGR01288        19 VVNDLSFTIARG----ECFGLLGPNGAGKSTIARMLLGMISP   56 (303)
T ss_pred             EEcceeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            455555555556    78999999999999999999986543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.79  E-value=4.6e-05  Score=65.61  Aligned_cols=37  Identities=30%  Similarity=0.531  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++..+.
T Consensus        15 ~l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        15 ILRGVSLEVPKG----EVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             EecceeeEECCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345555555555    7899999999999999999997554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.79  E-value=7.2e-05  Score=64.05  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        18 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         18 LQGVTFHMRPG----EMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             EeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999997554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.79  E-value=6e-05  Score=64.43  Aligned_cols=37  Identities=30%  Similarity=0.598  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        20 l~~vs~~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~~   56 (220)
T cd03293          20 LEDISLSVEEG----EFVALVGPSGCGKSTLLRIIAGLERP   56 (220)
T ss_pred             EeceeEEEeCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999986543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=97.79  E-value=3.2e-05  Score=66.89  Aligned_cols=37  Identities=35%  Similarity=0.671  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        36 il~~vs~~i~~G----e~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          36 ALKGISFTIEKG----EIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             eeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344454444455    7899999999999999999997554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.78  E-value=3.2e-05  Score=63.45  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .-+.|+|++|+|||.||..+++.+......+.|+.
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~   82 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT   82 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence            56999999999999999999988765555555553

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.77  E-value=7.4e-05  Score=63.76  Aligned_cols=37  Identities=30%  Similarity=0.586  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        20 il~~~sl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          20 AVDGVSFTVKPG----EVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             eecceEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344444444455    7899999999999999999997544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.77  E-value=4.8e-05  Score=75.50  Aligned_cols=39  Identities=21%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+.++    .+++|+|++|+|||||++.++....+.
T Consensus        18 il~~is~~i~~G----e~v~LvG~NGsGKSTLLriiaG~~~p~   56 (635)
T PRK11147         18 LLDNAELHIEDN----ERVCLVGRNGAGKSTLMKILNGEVLLD   56 (635)
T ss_pred             eEeCcEEEECCC----CEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence            455555555555    789999999999999999999866544

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.77  E-value=0.00018  Score=60.04  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..
T Consensus        23 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          23 LNNISGYVKPG----TLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEccEEEEeCC----cEEEEECCCCCCHHHHHHHHhCC
Confidence            44444344445    78999999999999999999974

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.77  E-value=0.00034  Score=59.24  Aligned_cols=173  Identities=15%  Similarity=0.152  Sum_probs=95.1

Q ss_pred             cCcccchhhHHH---HHHHHhcC----CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364           85 KELVGLDSRLEK---LRFLINKG----PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        85 ~~~vGR~~~~~~---l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      +..||.++....   |...|...    .-.++.|..+||+|.|||.+|+.+++..+..    +.....            
T Consensus       121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp----~l~vka------------  184 (368)
T COG1223         121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP----LLLVKA------------  184 (368)
T ss_pred             hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc----eEEech------------
Confidence            468887765433   34445432    2226889999999999999999999865432    111111            


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc--------------HHHHHHHhcCCCC--CCCCcEE
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE--------------LQQLESLAGKHDW--FGIGSRI  221 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--------------~~~l~~l~~~~~~--~~~g~~i  221 (373)
                       .+++....+.      ......+...+.-+..++++.+|.++.              .+....++..+.-  .+.|...
T Consensus       185 -t~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt  257 (368)
T COG1223         185 -TELIGEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT  257 (368)
T ss_pred             -HHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence             1111111110      111112222333356789999998753              2234455544421  2346656


Q ss_pred             EEEeCChhhHhh---cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          222 FITSRDKHLLMA---HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       222 liTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      |..|.+...+..   ......++..-.+.+|-..++...+-.-..+.   ..-.+.++++++|+.
T Consensus       258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S  319 (368)
T COG1223         258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS  319 (368)
T ss_pred             EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence            666665554432   12334567777788999988887763322221   112566777777753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.77  E-value=0.00018  Score=56.85  Aligned_cols=34  Identities=38%  Similarity=0.499  Sum_probs=28.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..++|+||+|+|||||.+.++.-+....+...|-
T Consensus        30 e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~   63 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFE   63 (223)
T ss_pred             ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEc
Confidence            5699999999999999999999887776666554

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.76  E-value=7.6e-05  Score=64.43  Aligned_cols=38  Identities=34%  Similarity=0.585  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+..
T Consensus        20 il~~~s~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~~   57 (233)
T cd03258          20 ALKDVSLSVPKG----EIFGIIGRSGAGKSTLIRCINGLERP   57 (233)
T ss_pred             eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444445555    78999999999999999999976543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.76  E-value=6.4e-05  Score=65.34  Aligned_cols=37  Identities=35%  Similarity=0.633  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        17 il~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        17 ALKNINLNINPG----EFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344454445555    7899999999999999999987554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.76  E-value=6e-05  Score=65.48  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        17 il~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         17 ALFDITLDCPQG----ETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             eEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444444455    7899999999999999999997654

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.74  E-value=0.00054  Score=62.41  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=27.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ++++++|+|++|+||||++..++..+......+.++
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI  275 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI  275 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence            357999999999999999999998776543334443

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.74  E-value=0.00011  Score=62.51  Aligned_cols=37  Identities=32%  Similarity=0.492  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        16 l~~~s~~i~~G----~~~~l~G~nGsGKSTLl~~l~G~~~~   52 (213)
T cd03262          16 LKGIDLTVKKG----EVVVIIGPSGSGKSTLLRCINLLEEP   52 (213)
T ss_pred             ecCceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444445    78999999999999999999986543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.74  E-value=5.3e-05  Score=64.42  Aligned_cols=36  Identities=33%  Similarity=0.506  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        16 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          16 LDDLNLDIADG----EFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             eeceEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999998654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.74  E-value=0.00017  Score=61.00  Aligned_cols=36  Identities=33%  Similarity=0.669  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        16 l~~~~~~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          16 LDDISLHVKKG----EIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             EeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            44444344445    7899999999999999999997543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.74  E-value=0.00015  Score=62.20  Aligned_cols=47  Identities=19%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           97 LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        97 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +...|..+-....++.|+|++|+|||+|+.+++.........++|+.
T Consensus        12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~   58 (225)
T PRK09361         12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID   58 (225)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            44444433333589999999999999999999987765556677765

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.74  E-value=7.4e-05  Score=62.83  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        15 ~l~~is~~i~~G----e~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          15 ILKGVNLTIKKG----EVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             eeeccceEECCC----cEEEEECCCCCCHHHHHHHHhCCC
Confidence            345555455555    789999999999999999998863

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.74  E-value=0.00054  Score=62.28  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=36.5

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+|-+.....+..+........+.+.++||+|+||||+|..+++.+-.
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~   50 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC   50 (325)
T ss_pred             cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence            566666677777766643333456999999999999999999998753

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=97.74  E-value=0.00015  Score=61.54  Aligned_cols=26  Identities=31%  Similarity=0.575  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++..+..
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~~   50 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGFIEP   50 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999986543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.74  E-value=6.4e-05  Score=65.64  Aligned_cols=37  Identities=32%  Similarity=0.472  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        18 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         18 VLHGIDLEVKPG----EVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             eeccceEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345555445555    7899999999999999999997544

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.73  E-value=0.00023  Score=61.96  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=27.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .-++++|++|+|||.||..+.+.+......+.|+
T Consensus       106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~  139 (254)
T COG1484         106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI  139 (254)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence            5699999999999999999999988443444444

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.73  E-value=6.4e-05  Score=66.01  Aligned_cols=37  Identities=27%  Similarity=0.573  Sum_probs=28.1

Q ss_pred             HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +.+.-.+.++    .+++|.|++|+|||||++.++..+.+.
T Consensus        41 ~~is~~i~~G----e~~~liG~NGsGKSTLlk~L~Gl~~p~   77 (264)
T PRK13546         41 DDISLKAYEG----DVIGLVGINGSGKSTLSNIIGGSLSPT   77 (264)
T ss_pred             eeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence            3333334445    789999999999999999999876543

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.73  E-value=0.00013  Score=62.94  Aligned_cols=37  Identities=24%  Similarity=0.450  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        18 l~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (234)
T cd03251          18 LRDISLDIPAG----ETVALVGPSGSGKSTLVNLIPRFYDV   54 (234)
T ss_pred             eeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhccccC
Confidence            44444444455    78999999999999999999976543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.73  E-value=0.00022  Score=61.07  Aligned_cols=36  Identities=22%  Similarity=0.549  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.
T Consensus        16 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        16 VNNISLTVPKN----SVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             EeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            33343334445    7899999999999999999998654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=97.72  E-value=3.3e-05  Score=70.28  Aligned_cols=39  Identities=31%  Similarity=0.601  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++.+...+.++    .+++|.|++|.|||||++.++..+.+
T Consensus        55 ~~l~~is~~i~~G----ei~gLlGpNGaGKSTLl~~L~Gl~~p   93 (340)
T PRK13536         55 AVVNGLSFTVASG----ECFGLLGPNGAGKSTIARMILGMTSP   93 (340)
T ss_pred             EEEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            3455665555555    88999999999999999999986543

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=97.72  E-value=0.0014  Score=57.65  Aligned_cols=173  Identities=17%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             cCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc--ccCHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK--KSGLVFLQKQ  160 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~  160 (373)
                      ..++|-.++-+.+..++...  -+...-|.|+||.|.|||+|......+ .+.+.-.+........-+  ...+..+.++
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq  102 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ  102 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence            45899888888888887631  112266899999999999999888776 334444444433322111  2233344444


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhC------CCceEEEecccccHH------HHHHHhcCC-CCCCCCcEEEEEeCC
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLR------HKKVLLVIDDVIELQ------QLESLAGKH-DWFGIGSRIFITSRD  227 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~LlvlDdv~~~~------~l~~l~~~~-~~~~~g~~iliTtR~  227 (373)
                      +..++... .....+..+....+...+.      +.++++|+|++|-..      .+-.+..-. ....|-+-|-+|||-
T Consensus       103 l~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl  181 (408)
T KOG2228|consen  103 LALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL  181 (408)
T ss_pred             HHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence            43332211 1112233333344444442      346899999875311      122222211 112345666788886


Q ss_pred             hh-------hHhhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364          228 KH-------LLMAHGVDEVYMHEHLNYDEALGLFCLKAF  259 (373)
Q Consensus       228 ~~-------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~  259 (373)
                      ..       +-.......++-+++++.++-..+++....
T Consensus       182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~  220 (408)
T KOG2228|consen  182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS  220 (408)
T ss_pred             cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence            52       222333334667788999999999988773

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.72  E-value=0.00011  Score=64.29  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=61.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC-------CcchhhhH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG-------VWNVYDGM  180 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  180 (373)
                      ...++|.|++|+|||||++.++..+....+. +++.. ..+........+.    ......+...       ...... .
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~-i~~~g-~~v~~~d~~~ei~----~~~~~~~q~~~~~r~~v~~~~~k-~  183 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLARILSTGISQ-LGLRG-KKVGIVDERSEIA----GCVNGVPQHDVGIRTDVLDGCPK-A  183 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCccCCCCce-EEECC-EEeecchhHHHHH----HHhcccccccccccccccccchH-H
Confidence            4679999999999999999999887654322 23211 0010000111111    1111111111       011111 1


Q ss_pred             HHHHHhh-CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          181 NMIRSRL-RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       181 ~~l~~~l-~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                      ..+...+ ...+-++++|++...+.+..+.....   .|..+|+||++..+
T Consensus       184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~  231 (270)
T TIGR02858       184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV  231 (270)
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence            1122222 25788999999987776666655543   37779999998765

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.72  E-value=0.00087  Score=60.52  Aligned_cols=87  Identities=15%  Similarity=0.076  Sum_probs=47.8

Q ss_pred             CceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhhHh-hc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCC
Q 017364          190 KKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHLLM-AH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPW  265 (373)
Q Consensus       190 ~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~-~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~  265 (373)
                      ++-++|+|+++.  ......++..+.....++.+|++|++..... .+ .....+.+.+++.+++.+.+....     ..
T Consensus       113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~  187 (325)
T PRK08699        113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA  187 (325)
T ss_pred             CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence            334556687753  2333333322222223566888888765322 21 123578899999999998886542     11


Q ss_pred             chHHHHHHHHHHHhCCCchHH
Q 017364          266 KGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       266 ~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .. .    ..+..++|.|+..
T Consensus       188 ~~-~----~~l~~~~g~p~~~  203 (325)
T PRK08699        188 EP-E----ERLAFHSGAPLFD  203 (325)
T ss_pred             cH-H----HHHHHhCCChhhh
Confidence            11 1    1135688988643

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=97.71  E-value=0.0013  Score=59.65  Aligned_cols=47  Identities=19%  Similarity=0.182  Sum_probs=37.2

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..++|+...++.+.+.+..-......|.|+|.+|+||+++|+.+...
T Consensus         6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~   52 (326)
T PRK11608          6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL   52 (326)
T ss_pred             CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            46899998888888777643333366899999999999999988753

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00057  Score=63.35  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             HHHHhhCCCceEEEeccc---ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhc
Q 017364          182 MIRSRLRHKKVLLVIDDV---IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAH  234 (373)
Q Consensus       182 ~l~~~l~~~~~LlvlDdv---~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~  234 (373)
                      .+......+|.|||||.-   -+.+.++.+...+..+. |. ||+.|++..+....
T Consensus       492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~-GG-Vv~VSHd~~fi~~~  545 (582)
T KOG0062|consen  492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN-GG-VVLVSHDEEFISSL  545 (582)
T ss_pred             HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC-Cc-EEEEECcHHHHhhc
Confidence            344455678999999954   34455555555444333 44 88889999886654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.71  E-value=0.00014  Score=62.99  Aligned_cols=36  Identities=31%  Similarity=0.489  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        20 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         20 ALHEVSLHINQG----EIVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             eeeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHcCCC
Confidence            455555555555    789999999999999999998754

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=97.71  E-value=0.0032  Score=60.68  Aligned_cols=195  Identities=12%  Similarity=0.102  Sum_probs=112.6

Q ss_pred             cccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHh--------ccccceEEEeechhhhcc
Q 017364           83 TLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLIS--------HEFEASCFLANVREISKK  151 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--------~~f~~~~~~~~~~~~~~~  151 (373)
                      .+..+-+|+.+..+|...+..   .......+.|.|.+|+|||..+..|...+.        +.|..+..-     .-.-
T Consensus       394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN-----gm~l  468 (767)
T KOG1514|consen  394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN-----GLRL  468 (767)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc-----ceee
Confidence            556789999999999888763   212245899999999999999999998654        123332211     1122


Q ss_pred             cCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC-----CCceEEEecccccHH-----HHHHHhcCCCCC-CCCcE
Q 017364          152 SGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR-----HKKVLLVIDDVIELQ-----QLESLAGKHDWF-GIGSR  220 (373)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~-----~l~~l~~~~~~~-~~g~~  220 (373)
                      .....+...++..+.+...    .....+..+..++.     .++.++++|+++..-     .+-.+   +.|. .++++
T Consensus       469 ~~~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sK  541 (767)
T KOG1514|consen  469 ASPREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSK  541 (767)
T ss_pred             cCHHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCc
Confidence            3455566666666544433    33344555555543     456899999886432     33333   2222 24666


Q ss_pred             EEEEeC-Ch-h---------hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCchHHHH
Q 017364          221 IFITSR-DK-H---------LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPLALKV  288 (373)
Q Consensus       221 iliTtR-~~-~---------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plal~~  288 (373)
                      ++|.+= +- +         +...+ ....+.+.|.+..+-.+.+..++.+.. ......+=++++++...|-.-.|+..
T Consensus       542 Lvvi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi  620 (767)
T KOG1514|consen  542 LVVIAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI  620 (767)
T ss_pred             eEEEEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence            655432 11 1         11122 234577889999999888877764331 11222333445555555555555544


Q ss_pred             HH
Q 017364          289 LG  290 (373)
Q Consensus       289 ~~  290 (373)
                      .-
T Consensus       621 c~  622 (767)
T KOG1514|consen  621 CR  622 (767)
T ss_pred             HH
Confidence            43

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.70  E-value=0.0012  Score=66.25  Aligned_cols=49  Identities=22%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|-+..++.+...+...      ..+ ...+.++||+|+|||+||+.++..+.
T Consensus       458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~  513 (758)
T PRK11034        458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_pred             ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45899999888888887631      112 35689999999999999999988773

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.70  E-value=0.00015  Score=65.12  Aligned_cols=37  Identities=30%  Similarity=0.642  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|.|||||++.++....+
T Consensus        18 l~~is~~i~~G----ei~~l~G~NGaGKTTLl~~l~Gl~~~   54 (301)
T TIGR03522        18 LDEVSFEAQKG----RIVGFLGPNGAGKSTTMKIITGYLPP   54 (301)
T ss_pred             EEEeEEEEeCC----eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444445    78999999999999999999976543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.70  E-value=0.00013  Score=62.01  Aligned_cols=24  Identities=46%  Similarity=0.711  Sum_probs=21.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +++|.|++|+|||||++.++....
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            799999999999999999997543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=97.70  E-value=0.00018  Score=61.75  Aligned_cols=38  Identities=21%  Similarity=0.476  Sum_probs=29.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        29 ~l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~   66 (226)
T cd03248          29 VLQDVSFTLHPG----EVTALVGPSGSGKSTVVALLENFYQP   66 (226)
T ss_pred             cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            455555445555    78999999999999999999986543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.70  E-value=4.9e-05  Score=59.83  Aligned_cols=22  Identities=45%  Similarity=0.609  Sum_probs=20.9

Q ss_pred             EEEeccCCcchhHHHHHHHHHH
Q 017364          111 IGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      |.|+|++|+|||+||+.+++.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999988

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.69  E-value=0.00019  Score=61.18  Aligned_cols=37  Identities=32%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        20 l~~~s~~i~~G----~~~~l~G~nGsGKSTLl~~i~Gl~~~   56 (218)
T cd03255          20 LKGVSLSIEKG----EFVAIVGPSGSGKSTLLNILGGLDRP   56 (218)
T ss_pred             EeeeEEEEcCC----CEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence            44444444455    78999999999999999999976543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=97.69  E-value=0.0014  Score=59.46  Aligned_cols=46  Identities=22%  Similarity=0.187  Sum_probs=34.1

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++|+...++.+...+..-......|.|+|++|+||+++|+.+...-
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s   46 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS   46 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence            4677777777776665433333568999999999999999887643

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.69  E-value=0.00012  Score=64.61  Aligned_cols=37  Identities=30%  Similarity=0.560  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        40 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~L~Gl~~p   76 (269)
T cd03294          40 VNDVSLDVREG----EIFVIMGLSGSGKSTLLRCINRLIEP   76 (269)
T ss_pred             eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444445555    78999999999999999999986543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.69  E-value=0.00041  Score=58.60  Aligned_cols=37  Identities=38%  Similarity=0.566  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        14 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~~   50 (206)
T TIGR03608        14 LDDLNLTIEKG----KMYAIIGESGSGKSTLLNIIGLLEKF   50 (206)
T ss_pred             EeceEEEEeCC----cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            34444344445    78999999999999999999986543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.68  E-value=0.00068  Score=67.32  Aligned_cols=39  Identities=33%  Similarity=0.530  Sum_probs=30.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..|+|+|.+|+|||||++.+.+-..+.
T Consensus       488 vL~~isL~I~~G----e~vaIvG~SGsGKSTL~KLL~gly~p~  526 (709)
T COG2274         488 VLEDLSLEIPPG----EKVAIVGRSGSGKSTLLKLLLGLYKPQ  526 (709)
T ss_pred             hhhceeEEeCCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            455555555566    789999999999999999999865543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.68  E-value=0.00013  Score=62.89  Aligned_cols=26  Identities=31%  Similarity=0.534  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++....+
T Consensus        12 e~~~i~G~nGsGKSTLl~~l~Gl~~p   37 (230)
T TIGR01184        12 EFISLIGHSGCGKSTLLNLISGLAQP   37 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999999986554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.68  E-value=0.00031  Score=60.68  Aligned_cols=48  Identities=19%  Similarity=0.114  Sum_probs=33.6

Q ss_pred             HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+-..|..+-....++.|.|++|+|||+|+.+++.........++|+.
T Consensus        13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~   60 (234)
T PRK06067         13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT   60 (234)
T ss_pred             HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence            334444434334588999999999999999999776444455666664

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.67  E-value=0.00016  Score=62.83  Aligned_cols=38  Identities=29%  Similarity=0.565  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        18 ~l~~~sl~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~~   55 (241)
T PRK10895         18 VVEDVSLTVNSG----EIVGLLGPNGAGKTTTFYMVVGIVPR   55 (241)
T ss_pred             EEeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344455445555    78999999999999999999986543

>TIGR01817 nifA Nif-specific regulatory protein

Probab=97.67  E-value=0.012  Score=57.45  Aligned_cols=50  Identities=14%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...++|....++++...+..-......|.|+|++|+|||++|+.+.....
T Consensus       195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~  244 (534)
T TIGR01817       195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP  244 (534)
T ss_pred             cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence            35799999998888887764333335688999999999999999987543

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>cd01394 radB RadB

Probab=97.67  E-value=0.00014  Score=62.01  Aligned_cols=48  Identities=19%  Similarity=0.199  Sum_probs=34.8

Q ss_pred             HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+...|.-+-....++.|+|++|+|||||+.+++.........++|+.
T Consensus         7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~   54 (218)
T cd01394           7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID   54 (218)
T ss_pred             HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            344444433333589999999999999999999988765555666664

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.67  E-value=0.00033  Score=58.40  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=26.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +++++++|++|+||||.+..++.....+...+..+.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis   36 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS   36 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence            478999999999999988888887665544444443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=97.66  E-value=8.8e-05  Score=62.41  Aligned_cols=36  Identities=33%  Similarity=0.561  Sum_probs=27.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        16 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          16 FSGLSFTLAAG----EALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             eccceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999987544

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=97.66  E-value=0.00014  Score=71.07  Aligned_cols=39  Identities=28%  Similarity=0.462  Sum_probs=30.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+..+    .+++|+|++|+|||||++.++....+.
T Consensus        20 il~~is~~i~~G----e~~~liG~NGsGKSTLl~~i~G~~~p~   58 (552)
T TIGR03719        20 ILKDISLSFFPG----AKIGVLGLNGAGKSTLLRIMAGVDKEF   58 (552)
T ss_pred             eecCceEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            455555555555    789999999999999999999876543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=7.6e-05  Score=65.96  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        16 il~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (271)
T PRK13638         16 VLKGLNLDFSLS----PVTGLVGANGCGKSTLFMNLSGLLRP   53 (271)
T ss_pred             cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            455555445555    78999999999999999999875543

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.66  E-value=0.00027  Score=63.99  Aligned_cols=105  Identities=9%  Similarity=0.042  Sum_probs=58.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG  172 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
                      ..++.+.+.+-. ..+.++|+|++|+|||||++.+++.+....+ ..+++..+.  ........+.+.+...+.......
T Consensus       120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de  196 (380)
T PRK12608        120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDR  196 (380)
T ss_pred             hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCC
Confidence            445666666432 2267799999999999999999998765443 322332221  223445556666555433221111


Q ss_pred             Ccch----h-hhHHHHHHhh-CCCceEEEeccccc
Q 017364          173 VWNV----Y-DGMNMIRSRL-RHKKVLLVIDDVIE  201 (373)
Q Consensus       173 ~~~~----~-~~~~~l~~~l-~~~~~LlvlDdv~~  201 (373)
                      ....    . ........+. .+++++||+|++..
T Consensus       197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr  231 (380)
T PRK12608        197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR  231 (380)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence            1111    0 1111111111 68899999999854

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=0.00014  Score=64.37  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        20 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   57 (274)
T PRK13647         20 ALKGLSLSIPEG----SKTALLGPNGAGKSTLLLHLNGIYLP   57 (274)
T ss_pred             eeeeEEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            344454445555    78999999999999999999976543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.66  E-value=0.00031  Score=62.13  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.
T Consensus        23 l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         23 LRDASFTVPGG----SIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999997644

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.65  E-value=0.00011  Score=64.51  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        16 il~~is~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        16 IVDGVDVTAPPG----SLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             EEeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            455555455555    7899999999999999999997554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.65  E-value=0.00033  Score=62.62  Aligned_cols=55  Identities=18%  Similarity=0.167  Sum_probs=36.8

Q ss_pred             cchhhHHHHHHHHhcCC--CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           89 GLDSRLEKLRFLINKGP--TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +|....+....++....  ...+-+.|+|+.|+|||.||..+++.+......+.++.
T Consensus       135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~  191 (306)
T PRK08939        135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH  191 (306)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            44444554455554321  12356899999999999999999999875544455543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.65  E-value=0.00015  Score=60.98  Aligned_cols=38  Identities=29%  Similarity=0.572  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        16 il~~~s~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~   53 (200)
T PRK13540         16 LLQQISFHLPAG----GLLHLKGSNGAGKTTLLKLIAGLLNP   53 (200)
T ss_pred             EEeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            355555445555    78999999999999999999886543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.65  E-value=0.00012  Score=63.34  Aligned_cols=37  Identities=32%  Similarity=0.539  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        17 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          17 ALDDVSLDIPSG----ELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             eeeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444444555    7899999999999999999998654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=0.00041  Score=61.21  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        28 il~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         28 AVKNVFCDIPRG----KVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EEcceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcccc
Confidence            455555455555    7899999999999999999987643

>PTZ00494 tuzin-like protein; Provisional

Probab=97.65  E-value=0.014  Score=53.87  Aligned_cols=163  Identities=13%  Similarity=0.079  Sum_probs=88.4

Q ss_pred             ccccCcccchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ..+..+|.|+.+-..+.+.|.. +...++++++.|..|+|||+|++.....-   .-..+++. +      ......++.
T Consensus       368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-V------Rg~EDtLrs  437 (664)
T PTZ00494        368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-V------GGTEDTLRS  437 (664)
T ss_pred             cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-e------cCCcchHHH
Confidence            5667899999998888888874 34457999999999999999999876532   22344443 2      222233444


Q ss_pred             HHHHHhCCCCCCCcchhhhHH----HHHHhhCCCceEEEec--ccccHHH-H---HHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          161 LISQLLNLPDSGVWNVYDGMN----MIRSRLRHKKVLLVID--DVIELQQ-L---ESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~LlvlD--dv~~~~~-l---~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                      +...+.-...+.-.+.-+.+.    .-+....++.-+||+-  +=.+..- .   -.+...    ..-|.|++----+.+
T Consensus       438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EVplESL  513 (664)
T PTZ00494        438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAVPMKAL  513 (664)
T ss_pred             HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeechHhhh
Confidence            454433222222222222221    1222234555555553  2222111 1   111111    124556654333322


Q ss_pred             Hh---hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          231 LM---AHGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       231 ~~---~~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      -.   .+.--..|-+++++.++|.++.+...
T Consensus       514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l  544 (664)
T PTZ00494        514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL  544 (664)
T ss_pred             chhhccCccceeEecCCcCHHHHHHHHhccc
Confidence            11   11223578899999999999876554

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=0.00016  Score=63.17  Aligned_cols=37  Identities=32%  Similarity=0.485  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        18 ~l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         18 VLDGVNLEIPDN----TITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             eeecceeEEcCC----CEEEEECCCCCCHHHHHHHHhccCC
Confidence            345555555555    7899999999999999999998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=0.00013  Score=71.04  Aligned_cols=38  Identities=21%  Similarity=0.408  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|+|++|+|||||++.++..+.+
T Consensus        16 il~~vsl~i~~G----e~~~liG~NGsGKSTLl~~l~Gl~~p   53 (530)
T PRK15064         16 LFENISVKFGGG----NRYGLIGANGCGKSTFMKILGGDLEP   53 (530)
T ss_pred             eEeCCEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444445555    78999999999999999999986654

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00083  Score=65.20  Aligned_cols=148  Identities=16%  Similarity=0.080  Sum_probs=75.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      .=|.++||+|.|||-||++++.+..-.|     +. +   . .       -+++....++      +.....+.+.+.-.
T Consensus       706 SGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V---K-G-------PELLNMYVGq------SE~NVR~VFerAR~  762 (953)
T KOG0736|consen  706 SGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V---K-G-------PELLNMYVGQ------SEENVREVFERARS  762 (953)
T ss_pred             ceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e---c-C-------HHHHHHHhcc------hHHHHHHHHHHhhc
Confidence            4588999999999999999998654332     21 1   0 0       1223333332      12223333444445


Q ss_pred             CCceEEEecccccHH---------------HHHHHhcCC----CCCCCCcEEEEEeCChhhHhh-----cCCCceEeCCC
Q 017364          189 HKKVLLVIDDVIELQ---------------QLESLAGKH----DWFGIGSRIFITSRDKHLLMA-----HGVDEVYMHEH  244 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~---------------~l~~l~~~~----~~~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~  244 (373)
                      -.+++|.||++++..               ...+++..+    .....+.-||-.|..+++++.     -+.+..+.+++
T Consensus       763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~  842 (953)
T KOG0736|consen  763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGP  842 (953)
T ss_pred             cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecC
Confidence            689999999987521               122232222    212234434444443433222     23456677887


Q ss_pred             CCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 017364          245 LNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG  281 (373)
Q Consensus       245 L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g  281 (373)
                      -+.+++..=..+..-+....+++.  ...+|+++|.-
T Consensus       843 ~~d~esk~~vL~AlTrkFkLdedV--dL~eiAk~cp~  877 (953)
T KOG0736|consen  843 NEDAESKLRVLEALTRKFKLDEDV--DLVEIAKKCPP  877 (953)
T ss_pred             CccHHHHHHHHHHHHHHccCCCCc--CHHHHHhhCCc
Confidence            777776654333321211111111  15667777754

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=97.64  E-value=0.00018  Score=60.85  Aligned_cols=38  Identities=32%  Similarity=0.610  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        23 ~l~~isl~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~~   60 (207)
T cd03369          23 VLKNVSFKVKAG----EKIGIVGRTGAGKSTLILALFRFLEA   60 (207)
T ss_pred             cccCceEEECCC----CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            344444444445    78999999999999999999876543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.64  E-value=0.0021  Score=64.86  Aligned_cols=52  Identities=15%  Similarity=0.330  Sum_probs=40.7

Q ss_pred             cCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           85 KELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ...+|.+...+.|..++..    +.....+++++|++|+||||+++.++..+...|
T Consensus       322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~  377 (784)
T PRK10787        322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY  377 (784)
T ss_pred             hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            4589999888888877762    112346899999999999999999998766443

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.64  E-value=0.00035  Score=66.32  Aligned_cols=38  Identities=29%  Similarity=0.651  Sum_probs=29.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+.
T Consensus        40 L~nVSfsI~~G----EivgIiGpNGSGKSTLLkiLaGLl~P~   77 (549)
T PRK13545         40 LNNISFEVPEG----EIVGIIGLNGSGKSTLSNLIAGVTMPN   77 (549)
T ss_pred             EeeeEEEEeCC----CEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence            44444444555    789999999999999999999876543

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.64  E-value=0.00016  Score=60.81  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=30.9

Q ss_pred             hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ...+..|.....++    ..-+|+|++|+|||||++.+....
T Consensus        44 k~iL~~isW~V~~g----e~W~I~G~NGsGKTTLL~ll~~~~   81 (257)
T COG1119          44 KKILGDLSWQVNPG----EHWAIVGPNGAGKTTLLSLLTGEH   81 (257)
T ss_pred             EeeccccceeecCC----CcEEEECCCCCCHHHHHHHHhccc
Confidence            34577888777777    447899999999999999998753

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.64  E-value=0.00082  Score=56.21  Aligned_cols=47  Identities=26%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+.+...+.++.   ++++|.|++|+||||+++.+...+......+++.
T Consensus         6 Q~~a~~~~l~~~~---~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~   52 (196)
T PF13604_consen    6 QREAVRAILTSGD---RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL   52 (196)
T ss_dssp             HHHHHHHHHHCTC---SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred             HHHHHHHHHhcCC---eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            3445555555432   7888999999999999999988777654344443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.63  E-value=7.6e-05  Score=73.65  Aligned_cols=38  Identities=26%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.+.....+
T Consensus       350 iL~~inl~i~~G----~~v~IvG~sGsGKSTLl~lL~gl~~p  387 (588)
T PRK13657        350 GVEDVSFEAKPG----QTVAIVGPTGAGKSTLINLLQRVFDP  387 (588)
T ss_pred             eecceeEEECCC----CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            455555555555    77999999999999999999976554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.63  E-value=0.00013  Score=70.28  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=29.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        18 il~~vsl~i~~G----e~~~liG~nGsGKSTLl~~l~G~~~p   55 (490)
T PRK10938         18 TLQLPSLTLNAG----DSWAFVGANGSGKSALARALAGELPL   55 (490)
T ss_pred             ecccceEEEcCC----CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            455555555555    78999999999999999999986544

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.63  E-value=0.00049  Score=70.17  Aligned_cols=49  Identities=27%  Similarity=0.450  Sum_probs=38.8

Q ss_pred             cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|.+..++.+...+...      +.+ ..++.++||+|+|||.||+.++..+-
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~  621 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY  621 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            56899999999888877521      112 34789999999999999999988764

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.63  E-value=0.00041  Score=59.02  Aligned_cols=25  Identities=40%  Similarity=0.627  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++..+.
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00057  Score=67.42  Aligned_cols=152  Identities=13%  Similarity=0.182  Sum_probs=87.8

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-cc-----ceEEEeechhhhcccCHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FE-----ASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~~  157 (373)
                      -+..+||++|++++.+.|....++.  -.++|.+|+|||+++.-++.++... -+     ..++-.+..           
T Consensus       169 lDPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g-----------  235 (786)
T COG0542         169 LDPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG-----------  235 (786)
T ss_pred             CCCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH-----------
Confidence            3569999999999999998654433  3469999999999999999987533 11     111111110           


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH-----------HHHHHHhcCCCCCCCC-cEEE-E
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL-----------QQLESLAGKHDWFGIG-SRIF-I  223 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~-----------~~l~~l~~~~~~~~~g-~~il-i  223 (373)
                            .+ .....-..++++.+..+.+.+ ...+++|++|.++..           +.-.-+.+.+.   .| .++| .
T Consensus       236 ------~L-vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---RGeL~~IGA  305 (786)
T COG0542         236 ------SL-VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RGELRCIGA  305 (786)
T ss_pred             ------HH-hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---cCCeEEEEe
Confidence                  00 011111234444444443333 344899999987532           11222233332   23 3344 5


Q ss_pred             EeCChhhHh------hcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          224 TSRDKHLLM------AHGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       224 TtR~~~~~~------~~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ||-++.--.      -......+.+...+.+++...++...
T Consensus       306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk  346 (786)
T COG0542         306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK  346 (786)
T ss_pred             ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence            555543210      01245678899999999999886543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.63  E-value=0.00072  Score=55.71  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=32.4

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..+.|-...++.+.-.+..+    .+.++.||+|+||||+.+.+-.
T Consensus        14 ~~yYg~~~aL~~i~l~i~~~----~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          14 NLYYGDKHALKDINLDIPKN----KVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             eEEECchhhhccCceeccCC----ceEEEECCCCcCHHHHHHHHHh
Confidence            45777666677766555544    8999999999999999988654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.63  E-value=0.00018  Score=62.44  Aligned_cols=36  Identities=33%  Similarity=0.557  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+.
T Consensus        17 l~~~s~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         17 LHNIDLNIDQG----EVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             eeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999997543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=97.63  E-value=7.2e-05  Score=64.51  Aligned_cols=38  Identities=29%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        15 il~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~l~g~~~~   52 (232)
T cd03300          15 ALDGVSLDIKEG----EFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             eeccceEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444445555    78999999999999999999986554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.63  E-value=0.00037  Score=61.00  Aligned_cols=37  Identities=16%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        20 ~l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         20 AVNNVNLEVREQ----EIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             EEEeeeeEEcCC----eEEEEECCCCCCHHHHHHHHhCCcC
Confidence            344554445555    8899999999999999999997644

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.62  E-value=0.00019  Score=60.88  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999997654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.62  E-value=5.1e-05  Score=58.09  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=21.4

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +|+|.|++|+||||+|+.+++.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999876

...

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.62  E-value=0.00016  Score=62.54  Aligned_cols=36  Identities=28%  Similarity=0.558  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        17 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        17 LDDVSFTVRPG----EFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            44444444555    7899999999999999999997554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.61  E-value=0.0003  Score=60.78  Aligned_cols=37  Identities=30%  Similarity=0.621  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        17 l~~i~~~i~~G----e~~~l~G~nGsGKSTLl~~i~Gl~~~   53 (236)
T cd03253          17 LKDVSFTIPAG----KKVAIVGPSGSGKSTILRLLFRFYDV   53 (236)
T ss_pred             eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            34443334445    78999999999999999999986543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.61  E-value=0.00049  Score=60.34  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        20 ~l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~   57 (257)
T PRK10619         20 VLKGVSLQANAG----DVISIIGSSGSGKSTFLRCINFLEKP   57 (257)
T ss_pred             EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            344444444555    78999999999999999999986543

>PHA00729 NTP-binding motif containing protein

Probab=97.61  E-value=0.00032  Score=59.11  Aligned_cols=26  Identities=35%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...++|+|++|+||||||..++..+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999998754

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.61  E-value=0.00013  Score=62.68  Aligned_cols=38  Identities=32%  Similarity=0.535  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        18 ~l~~isl~i~~G----~~~~i~G~nGsGKSTLl~~l~G~~~~   55 (229)
T cd03254          18 VLKDINFSIKPG----ETVAIVGPTGAGKTTLINLLMRFYDP   55 (229)
T ss_pred             cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            344444444455    78999999999999999999986543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=0.00022  Score=62.39  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++..+..
T Consensus        22 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~~   59 (254)
T PRK14273         22 ALNNINIKILKN----SITALIGPSGCGKSTFLRTLNRMNDL   59 (254)
T ss_pred             eecceeeEEcCC----CEEEEECCCCCCHHHHHHHHhccccC
Confidence            455555555555    78999999999999999999986653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.61  E-value=0.00012  Score=72.20  Aligned_cols=39  Identities=26%  Similarity=0.543  Sum_probs=29.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.++..+.+.
T Consensus       358 il~~i~l~i~~G----~~~aIvG~sGsGKSTLl~ll~gl~~p~  396 (582)
T PRK11176        358 ALRNINFKIPAG----KTVALVGRSGSGKSTIANLLTRFYDID  396 (582)
T ss_pred             cccCceEEeCCC----CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence            345555445555    679999999999999999999876554

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.60  E-value=0.00014  Score=64.16  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        26 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         26 LLHPLSLTFPAG----KVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             EEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            455555555555    7899999999999999999997544

>PRK08118 topology modulation protein; Reviewed

Probab=97.60  E-value=6e-05  Score=61.27  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=25.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc---cccceEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH---EFEASCF  141 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~~  141 (373)
                      +.|.|+|++|+||||||+.+++.+.-   +++..+|
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            45899999999999999999987643   2444454

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.60  E-value=0.00048  Score=59.11  Aligned_cols=46  Identities=22%  Similarity=0.148  Sum_probs=32.4

Q ss_pred             HHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEe
Q 017364           98 RFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLA  143 (373)
Q Consensus        98 ~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~  143 (373)
                      ..+|..+-....++.|+|++|+|||+|+..++.......      ..++|+.
T Consensus         9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~   60 (226)
T cd01393           9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID   60 (226)
T ss_pred             HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence            334443333348999999999999999999987754443      4556664

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.59  E-value=8.1e-05  Score=67.04  Aligned_cols=50  Identities=14%  Similarity=0.306  Sum_probs=41.6

Q ss_pred             cCcccchhhHHHHHHHHhcC----CCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           85 KELVGLDSRLEKLRFLINKG----PTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|.++.++++...+...    ....++++|+||+|+||||||+.++..+..
T Consensus        51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            37999999999998888642    223588999999999999999999987754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.59  E-value=6.8e-05  Score=68.70  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 ~l~~vsl~i~~G----e~~~llG~sGsGKSTLLr~iaGl~~p   56 (356)
T PRK11650         19 VIKGIDLDVADG----EFIVLVGPSGCGKSTLLRMVAGLERI   56 (356)
T ss_pred             EEeeeeEEEcCC----CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            344444444455    78999999999999999999985443

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.59  E-value=9.4e-05  Score=61.38  Aligned_cols=122  Identities=17%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG  172 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
                      ..+-+...+..+    ..++|.|++|+|||||++.++..+.+.. ..+.+.+..+.....      ..............
T Consensus        14 ~~~~l~~~v~~g----~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~------~~~~~~~~~~~~~~   82 (186)
T cd01130          14 QAAYLWLAVEAR----KNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPH------PNWVRLVTRPGNVE   82 (186)
T ss_pred             HHHHHHHHHhCC----CEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCC------CCEEEEEEecCCCC
Confidence            345555555555    7799999999999999999998776443 233332221111000      00000000000000


Q ss_pred             CcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcE-EEEEeCChh
Q 017364          173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSR-IFITSRDKH  229 (373)
Q Consensus       173 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~-iliTtR~~~  229 (373)
                      ..........+...++..+-.++++.+.+.+.+..+... .   .|.. ++.|.+..+
T Consensus        83 ~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~-~---tGh~g~~~T~Ha~s  136 (186)
T cd01130          83 GSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM-N---TGHPGGMTTIHANS  136 (186)
T ss_pred             CCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH-h---cCCCCceeeecCCC
Confidence            111122344566667778889999999887765433322 1   2444 666666553

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=0.00051  Score=59.97  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        20 l~~~s~~i~~G----~~~~i~G~nGsGKSTLl~~l~Gl~~~   56 (251)
T PRK14249         20 LKNINMDFPER----QITAIIGPSGCGKSTLLRALNRMNDI   56 (251)
T ss_pred             ecceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcccCc
Confidence            44444444555    78999999999999999999986554

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.59  E-value=0.00038  Score=59.55  Aligned_cols=37  Identities=32%  Similarity=0.640  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        19 ~l~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          19 VLKNISFSIKPG----EKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             cccceEEEECCC----CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            455555555555    7899999999999999999997544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.58  E-value=0.00034  Score=63.91  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe-echhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA-NVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      ..+.|.|++|+||||+++.+...+.......++.. +..+.... .    ...+    ...... ..........++..+
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~----~~~~----i~q~ev-g~~~~~~~~~l~~~l  192 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-N----KRSL----INQREV-GLDTLSFANALRAAL  192 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-C----ccce----EEcccc-CCCCcCHHHHHHHhh
Confidence            77999999999999999999987765444444432 11110000 0    0000    000000 111123455677788


Q ss_pred             CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364          188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL  231 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~  231 (373)
                      +..+-+|++|++.+.+.....+...   ..|..++.|.+..+..
T Consensus       193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~  233 (343)
T TIGR01420       193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA  233 (343)
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence            8899999999998877665533332   2366688888876544

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.58  E-value=0.00026  Score=61.27  Aligned_cols=36  Identities=31%  Similarity=0.656  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        18 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          18 LDNISLRIKPG----EVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             eeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            34444334445    7899999999999999999997654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.58  E-value=0.00039  Score=60.20  Aligned_cols=37  Identities=24%  Similarity=0.488  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 l~~i~~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~~   55 (238)
T cd03249          19 LKGLSLTIPPG----KTVALVGSSGCGKSTVVSLLERFYDP   55 (238)
T ss_pred             eeceEEEecCC----CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence            34444344455    78999999999999999999986543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.0011  Score=61.12  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++++++|++|+||||.+..++..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357999999999999999999988765

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.58  E-value=0.00014  Score=57.07  Aligned_cols=46  Identities=26%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ||....++++...+..-......|.|+|++|+||+++|+.+...-.
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~   46 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG   46 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence            5667777777776654222236689999999999999998877433

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=97.58  E-value=0.0051  Score=59.49  Aligned_cols=50  Identities=22%  Similarity=0.277  Sum_probs=40.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...++|+...++.+...+..-......|.|+|++|+|||++|+.+.....
T Consensus       186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~  235 (509)
T PRK05022        186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP  235 (509)
T ss_pred             CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            35799999999888888775444446799999999999999999987643

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.58  E-value=7.3e-05  Score=72.30  Aligned_cols=38  Identities=24%  Similarity=0.531  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        26 il~~vsl~i~~G----e~~~liG~NGsGKSTLl~~l~Gl~~p   63 (510)
T PRK15439         26 VLKGIDFTLHAG----EVHALLGGNGAGKSTLMKIIAGIVPP   63 (510)
T ss_pred             eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            345555445555    78999999999999999999976543

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.57  E-value=0.00029  Score=61.08  Aligned_cols=36  Identities=33%  Similarity=0.628  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        17 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          17 LKDVSLSINPG----EFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             EecceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            44444444455    7899999999999999999997544

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06696 uridine kinase; Validated

Probab=97.57  E-value=0.00014  Score=62.17  Aligned_cols=47  Identities=23%  Similarity=0.200  Sum_probs=37.1

Q ss_pred             cchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           89 GLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        89 GR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .|.+.+++|...+.. ...++.+|+|.|++|+||||||+.++..+...
T Consensus         2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~   49 (223)
T PRK06696          2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR   49 (223)
T ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            356677777776653 34457899999999999999999999988644

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.57  E-value=0.00031  Score=60.71  Aligned_cols=36  Identities=31%  Similarity=0.621  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.
T Consensus        16 l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          16 LDDVSFSVRPG----EIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             ecCceEEecCC----cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            44444444455    7899999999999999999997543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.57  E-value=0.00016  Score=66.13  Aligned_cols=37  Identities=32%  Similarity=0.548  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        21 l~~vsl~i~~G----ei~~iiG~nGsGKSTLlk~L~Gl~~p   57 (343)
T PRK11153         21 LNNVSLHIPAG----EIFGVIGASGAGKSTLIRCINLLERP   57 (343)
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999986543

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.56  E-value=9.6e-05  Score=61.95  Aligned_cols=51  Identities=24%  Similarity=0.428  Sum_probs=38.0

Q ss_pred             ccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           88 VGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        88 vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +|-...+..|..-+.++    ++.++.|++|.||||..+.+.+-+...-+.+.|.
T Consensus        12 Fg~k~av~~isf~v~~G----~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~   62 (300)
T COG4152          12 FGDKKAVDNISFEVPPG----EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN   62 (300)
T ss_pred             cCceeeecceeeeecCC----eEEEeecCCCCCccchHHHHhccCCccCceEEEc
Confidence            34334445555444555    8999999999999999999999887766666665

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=97.56  E-value=0.0033  Score=63.17  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=37.6

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..++|+...++.+...+..-......|.|+|++|+|||++|+.+...-
T Consensus       376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s  423 (686)
T PRK15429        376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS  423 (686)
T ss_pred             cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            469999988888876665332233579999999999999999998754

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.56  E-value=0.00081  Score=64.36  Aligned_cols=50  Identities=26%  Similarity=0.510  Sum_probs=37.4

Q ss_pred             hhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           91 DSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        91 ~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..-++++..||..   +....+++.|+||+|+||||.++.++..+.  +...-|.
T Consensus        25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~   77 (519)
T PF03215_consen   25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI   77 (519)
T ss_pred             HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence            4567778887764   223357999999999999999999998764  4455564

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.56  E-value=0.00059  Score=59.24  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        18 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        18 LNDLSLYVDPG----ELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             eeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999997654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.56  E-value=0.00058  Score=67.66  Aligned_cols=129  Identities=14%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      +-+.|+|++|+|||++++.++......|    +......+.             ....+.      ........+.....
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~~~-------------~~~~g~------~~~~~~~~f~~a~~  242 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDFV-------------EMFVGV------GASRVRDMFEQAKK  242 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHHhH-------------Hhhhcc------cHHHHHHHHHHHHh
Confidence            4599999999999999999988765332    111111100             000010      11111222333334


Q ss_pred             CCceEEEecccccHH----------------HHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCC
Q 017364          189 HKKVLLVIDDVIELQ----------------QLESLAGKHDWF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHL  245 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L  245 (373)
                      ..+++|++|+++...                .+..++....-+  ..+..+|.||...+.+..     ...+..+.++..
T Consensus       243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P  322 (644)
T PRK10733        243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP  322 (644)
T ss_pred             cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence            578899999986531                233333222211  224445556665543221     124567889989


Q ss_pred             CHhHHHHHHHHhhcC
Q 017364          246 NYDEALGLFCLKAFK  260 (373)
Q Consensus       246 ~~~ea~~l~~~~~~~  260 (373)
                      +.++-.+++..+...
T Consensus       323 d~~~R~~Il~~~~~~  337 (644)
T PRK10733        323 DVRGREQILKVHMRR  337 (644)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            998888888877633

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=0.00055  Score=59.37  Aligned_cols=36  Identities=31%  Similarity=0.552  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        19 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         19 LKDISVKFEGG----AIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             eeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444445    7899999999999999999998654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.55  E-value=0.0003  Score=60.68  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999987543

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.55  E-value=0.00021  Score=62.25  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        16 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~p   53 (247)
T TIGR00972        16 ALKNINLDIPKN----QVTALIGPSGCGKSTLLRSLNRMNDL   53 (247)
T ss_pred             eecceeEEECCC----CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            344554445555    78999999999999999999987653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.55  E-value=0.00016  Score=70.43  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.+.....+
T Consensus       337 il~~i~l~i~~G----~~~~ivG~sGsGKSTL~~ll~g~~~~  374 (529)
T TIGR02857       337 ALRPVSFTVPPG----ERVALVGPSGAGKSTLLNLLLGFVDP  374 (529)
T ss_pred             cccceeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444444455    78999999999999999999875543

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0014  Score=60.06  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=83.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR  188 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  188 (373)
                      |=..++||||.||||++.++++.+.  |+  ++.-.......   -.+ ++.++..                       .
T Consensus       236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~~---n~d-Lr~LL~~-----------------------t  284 (457)
T KOG0743|consen  236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVKL---DSD-LRHLLLA-----------------------T  284 (457)
T ss_pred             ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccccC---cHH-HHHHHHh-----------------------C
Confidence            3478999999999999999998664  22  22211111111   011 2222221                       2


Q ss_pred             CCceEEEecccccHH--------------------HHHHHhcCC---CCCCCCcEEEE-EeCChhhH-----hhcCCCce
Q 017364          189 HKKVLLVIDDVIELQ--------------------QLESLAGKH---DWFGIGSRIFI-TSRDKHLL-----MAHGVDEV  239 (373)
Q Consensus       189 ~~~~LlvlDdv~~~~--------------------~l~~l~~~~---~~~~~g~~ili-TtR~~~~~-----~~~~~~~~  239 (373)
                      ..+-+||+.|++-.-                    .+.-++..+   .+...+-|||| ||...+-+     ..-+.+-.
T Consensus       285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh  364 (457)
T KOG0743|consen  285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH  364 (457)
T ss_pred             CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence            345567777764221                    122222222   21122345554 55544321     11123456


Q ss_pred             EeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 017364          240 YMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF  294 (373)
Q Consensus       240 ~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  294 (373)
                      +.+.-=+.+....|+........     ...++.+|.+...+.-+.-..++..+-
T Consensus       365 I~mgyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~lm  414 (457)
T KOG0743|consen  365 IYMGYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEELM  414 (457)
T ss_pred             EEcCCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHHh
Confidence            78888899999999988875433     134567777777777777777776653

>PRK04132 replication factor C small subunit; Provisional

Probab=97.55  E-value=0.0041  Score=62.73  Aligned_cols=158  Identities=11%  Similarity=0.078  Sum_probs=89.1

Q ss_pred             Eec--cCCcchhHHHHHHHHHHh-ccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCC
Q 017364          113 ICG--MGGIGKTTLARVVYDLIS-HEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRH  189 (373)
Q Consensus       113 I~G--~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  189 (373)
                      +.|  |.++||||+|..+++.+- +.+...+.-.+.   +...+.. ..++++..+....+.               -..
T Consensus       569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rgid-~IR~iIk~~a~~~~~---------------~~~  629 (846)
T PRK04132        569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERGIN-VIREKVKEFARTKPI---------------GGA  629 (846)
T ss_pred             hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCcccHH-HHHHHHHHHHhcCCc---------------CCC
Confidence            347  899999999999998762 222222222222   1112222 233333322111100               012


Q ss_pred             CceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCCCHhHHHHHHHHhhcCCCCCC
Q 017364          190 KKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHLNYDEALGLFCLKAFKSHKPW  265 (373)
Q Consensus       190 ~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~  265 (373)
                      +.-++|+|+++..  .....++.........+++|+++.+.. +...+ .....+.+.+++.++....+...+...... 
T Consensus       630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-  708 (846)
T PRK04132        630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-  708 (846)
T ss_pred             CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-
Confidence            3469999999754  344444444433344677777776653 22222 234589999999999988887665322211 


Q ss_pred             chHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          266 KGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       266 ~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                       ...+....|+..++|.+.....+..
T Consensus       709 -i~~e~L~~Ia~~s~GDlR~AIn~Lq  733 (846)
T PRK04132        709 -LTEEGLQAILYIAEGDMRRAINILQ  733 (846)
T ss_pred             -CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence             2245788999999998865544433

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.55  E-value=0.00058  Score=57.86  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .++++|+|++|.|||||.+.+..
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            38899999999999999999885

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=0.00028  Score=62.60  Aligned_cols=38  Identities=26%  Similarity=0.492  Sum_probs=28.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 ~l~~vsl~i~~G----e~~~i~G~NGsGKSTLl~~l~Gl~~p   56 (277)
T PRK13652         19 ALNNINFIAPRN----SRIAVIGPNGAGKSTLFRHFNGILKP   56 (277)
T ss_pred             eeeEeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444444455    78999999999999999999976543

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0019  Score=63.39  Aligned_cols=179  Identities=16%  Similarity=0.184  Sum_probs=102.5

Q ss_pred             ccCcccchhh---HHHHHHHHhcC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           84 LKELVGLDSR---LEKLRFLINKG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        84 ~~~~vGR~~~---~~~l~~~l~~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      -.++.|-++.   ++++...|...       ..-++=+.|+||+|+|||-||+.++....-.    ++-.+.        
T Consensus       310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP----F~svSG--------  377 (774)
T KOG0731|consen  310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----FFSVSG--------  377 (774)
T ss_pred             cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc----eeeech--------
Confidence            3568887764   55555556532       2225679999999999999999999854322    221111        


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc-----------------HHHHHHHhcCCCCCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE-----------------LQQLESLAGKHDWFG  216 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-----------------~~~l~~l~~~~~~~~  216 (373)
                           .+..+.+.+...      ......+...-.+.++++.+|+++.                 ...+.+++....-+.
T Consensus       378 -----SEFvE~~~g~~a------srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~  446 (774)
T KOG0731|consen  378 -----SEFVEMFVGVGA------SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE  446 (774)
T ss_pred             -----HHHHHHhcccch------HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence                 111222222111      1112223333356788999997753                 123555554443222


Q ss_pred             C--CcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364          217 I--GSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK  287 (373)
Q Consensus       217 ~--g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~  287 (373)
                      .  +.-+|-+|...+.++.     -+.+..+.++..+..+..++|.-++...... ....+... ++..+-|++-|.-
T Consensus       447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gadl  522 (774)
T KOG0731|consen  447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGADL  522 (774)
T ss_pred             CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHHH
Confidence            2  2333344544443322     2345678899999999999999888544433 23444555 8888988887653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=0.00029  Score=61.66  Aligned_cols=37  Identities=27%  Similarity=0.518  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        17 il~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         17 ILNDLSLSLPTG----KITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             EEeeeeeEEcCC----cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            345554445555    7899999999999999999997544

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.54  E-value=0.00075  Score=56.24  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH--hccccceEEEeechhhhcccC---------HHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI--SHEFEASCFLANVREISKKSG---------LVFLQKQL  161 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~~~---------~~~~~~~~  161 (373)
                      +-....+.|...    .++.+.|++|+|||.||...+-+.  ..+|...++...........+         +.....-+
T Consensus         8 ~Q~~~~~al~~~----~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~   83 (205)
T PF02562_consen    8 EQKFALDALLNN----DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPI   83 (205)
T ss_dssp             HHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHH
T ss_pred             HHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHH
Confidence            333444444433    789999999999999998888643  355667766654322111111         01111111


Q ss_pred             HHHHhCCCCCCCcchhhhHHH------HHHhhCCC---ceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 017364          162 ISQLLNLPDSGVWNVYDGMNM------IRSRLRHK---KVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK  228 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~------l~~~l~~~---~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~  228 (373)
                      ...+....  .....+.....      -...++++   ..++|+|++.+  ..++..++...   +.||+++++--..
T Consensus        84 ~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~  156 (205)
T PF02562_consen   84 YDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS  156 (205)
T ss_dssp             HHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred             HHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence            11111110  00011111100      01112332   46899999965  44666665543   6799999987754

; GO: 0005524 ATP binding; PDB: 3B85_A.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.54  E-value=0.00036  Score=60.08  Aligned_cols=26  Identities=19%  Similarity=0.441  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++....+
T Consensus        13 e~~~i~G~nGsGKSTLl~~l~Gl~~p   38 (230)
T TIGR02770        13 EVLALVGESGSGKSLTCLAILGLLPP   38 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999987654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.53  E-value=0.00038  Score=60.49  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=27.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..
T Consensus        15 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        15 ILKGVNLTVKKG----EIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEeccceEEcCC----CEEEEECCCCCCHHHHHHHHhCC
Confidence            344555445555    78999999999999999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.53  E-value=0.00032  Score=64.77  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+..+    .+++|.|++|+|||||++.++....+
T Consensus        19 l~~vsl~i~~G----e~~~l~G~nGsGKSTLL~~iaGl~~p   55 (369)
T PRK11000         19 SKDINLDIHEG----EFVVFVGPSGCGKSTLLRMIAGLEDI   55 (369)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            34444444444    78999999999999999999986543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.53  E-value=0.00022  Score=62.18  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++...
T Consensus        17 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         17 LRGLNLEVRPG----EVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             eecceeEEcCC----CEEEEECCCCCCHHHHHHHHcCCc
Confidence            44444444455    789999999999999999999863

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00095  Score=64.41  Aligned_cols=150  Identities=16%  Similarity=0.162  Sum_probs=83.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      +..+.++||+|+|||.||+.++......|-.+..-                 .++....++      +.......+....
T Consensus       276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-----------------~l~sk~vGe------sek~ir~~F~~A~  332 (494)
T COG0464         276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-----------------ELLSKWVGE------SEKNIRELFEKAR  332 (494)
T ss_pred             CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------------HHhccccch------HHHHHHHHHHHHH
Confidence            56899999999999999999999554443222211                 111111110      1122233344444


Q ss_pred             CCCceEEEecccccH-------------HHHHHHhcCCCCC--CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCH
Q 017364          188 RHKKVLLVIDDVIEL-------------QQLESLAGKHDWF--GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNY  247 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~--~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~  247 (373)
                      +..+++|.+|+++..             ..+..++......  ..+..||-+|........     ......+.+++.+.
T Consensus       333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~  412 (494)
T COG0464         333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL  412 (494)
T ss_pred             cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence            678899999988531             2333443333211  223334445544433221     13456889999999


Q ss_pred             hHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Q 017364          248 DEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG  281 (373)
Q Consensus       248 ~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g  281 (373)
                      ++..+.|..+........ ...-..+.+++.+.|
T Consensus       413 ~~r~~i~~~~~~~~~~~~-~~~~~~~~l~~~t~~  445 (494)
T COG0464         413 EERLEIFKIHLRDKKPPL-AEDVDLEELAEITEG  445 (494)
T ss_pred             HHHHHHHHHHhcccCCcc-hhhhhHHHHHHHhcC
Confidence            999999998875322220 112235556666666

>PRK04296 thymidine kinase; Provisional

Probab=97.52  E-value=0.00018  Score=59.86  Aligned_cols=111  Identities=19%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC--CCcchhhhHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS--GVWNVYDGMNMIRSR  186 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~  186 (373)
                      .++.|+|+.|.||||++..++.+...+...++++...  +......    ..+...+ +....  ......+....+.+ 
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~----~~i~~~l-g~~~~~~~~~~~~~~~~~~~~-   74 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGE----GKVVSRI-GLSREAIPVSSDTDIFELIEE-   74 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccC----CcEecCC-CCcccceEeCChHHHHHHHHh-
Confidence            5788999999999999999999876554444444210  0100110    1111111 11000  01122333333333 


Q ss_pred             hCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364          187 LRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH  229 (373)
Q Consensus       187 l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~  229 (373)
                      ..++.-+||+|.+.-  .+++.++...+.  ..|..|++|.++.+
T Consensus        75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~  117 (190)
T PRK04296         75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD  117 (190)
T ss_pred             hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence            234556899999853  333444443322  24778999999853

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.52  E-value=0.00038  Score=60.80  Aligned_cols=35  Identities=40%  Similarity=0.584  Sum_probs=27.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..
T Consensus        22 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         22 ILKGLNLSINKG----EIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             eeecceeEEcCC----cEEEEECCCCCCHHHHHHHHcCC
Confidence            455555555555    78999999999999999999874

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.52  E-value=0.00012  Score=61.26  Aligned_cols=43  Identities=28%  Similarity=0.520  Sum_probs=32.6

Q ss_pred             cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      |....++.+.-.+..+    .+++|.|++|+|||||.+.+...+++.
T Consensus        19 G~~~Ild~v~l~V~~G----ei~~iiGgSGsGKStlLr~I~Gll~P~   61 (263)
T COG1127          19 GDRVILDGVDLDVPRG----EILAILGGSGSGKSTLLRLILGLLRPD   61 (263)
T ss_pred             CCEEEecCceeeecCC----cEEEEECCCCcCHHHHHHHHhccCCCC
Confidence            4444555555445555    889999999999999999999876654

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.52  E-value=0.0012  Score=67.43  Aligned_cols=49  Identities=22%  Similarity=0.411  Sum_probs=38.5

Q ss_pred             cCcccchhhHHHHHHHHhcC------CCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKG------PTD-VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|-+..++.+...+...      ..+ ...+.++||+|+|||+||+.+++.+-
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~  564 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF  564 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence            56899999999998877521      122 24578999999999999999998764

>PRK13409 putative ATPase RIL; Provisional

Probab=97.51  E-value=0.00051  Score=67.31  Aligned_cols=38  Identities=32%  Similarity=0.530  Sum_probs=28.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+..+. .+.++    .+++|.|++|+|||||++.++..+.+.
T Consensus        89 ~L~~l~-~i~~G----ev~gLvG~NGaGKSTLlkiL~G~l~p~  126 (590)
T PRK13409         89 KLYGLP-IPKEG----KVTGILGPNGIGKTTAVKILSGELIPN  126 (590)
T ss_pred             eEecCC-cCCCC----CEEEEECCCCCCHHHHHHHHhCCccCC
Confidence            344443 34444    799999999999999999999866544

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=97.51  E-value=0.00041  Score=63.64  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=23.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++....+
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaGl~~p   50 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISGLTRP   50 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999999986543

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.51  E-value=0.00084  Score=58.04  Aligned_cols=48  Identities=15%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+..+|.-+-.....+.|.|++|+|||+|+.+++.........++|+.
T Consensus         9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs   56 (237)
T TIGR03877         9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA   56 (237)
T ss_pred             hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            344445444344588999999999999999998876444455666664

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.51  E-value=0.00025  Score=65.06  Aligned_cols=37  Identities=32%  Similarity=0.617  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+..+    .+++|.|++|+|||||.+.++....+
T Consensus        21 l~~vsl~i~~G----e~~~llGpsGsGKSTLLr~iaGl~~p   57 (362)
T TIGR03258        21 LDDLSLEIEAG----ELLALIGKSGCGKTTLLRAIAGFVKA   57 (362)
T ss_pred             EeeeEEEECCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444444    78999999999999999999985543

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.51  E-value=0.00069  Score=60.06  Aligned_cols=28  Identities=29%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++++|+|++|+||||++..++..+...
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999877544

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.51  E-value=0.00017  Score=61.06  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ...++.|+|++|+|||+++.+++.........++|+.
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~   47 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID   47 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            3489999999999999999999987655556677775

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.51  E-value=0.00027  Score=63.40  Aligned_cols=39  Identities=33%  Similarity=0.524  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++.-+.+.
T Consensus        22 ~l~~vsl~i~~G----e~v~iiG~nGsGKSTLl~~L~Gl~~p~   60 (305)
T PRK13651         22 ALDNVSVEINQG----EFIAIIGQTGSGKTTFIEHLNALLLPD   60 (305)
T ss_pred             ceeeeEEEEeCC----CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            344555445555    789999999999999999999865443

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.51  E-value=0.00034  Score=61.07  Aligned_cols=27  Identities=26%  Similarity=0.593  Sum_probs=24.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++....+.
T Consensus        27 e~~~IvG~nGsGKSTLlk~l~Gl~~p~   53 (255)
T cd03236          27 QVLGLVGPNGIGKSTALKILAGKLKPN   53 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence            789999999999999999999876543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.51  E-value=0.00071  Score=59.30  Aligned_cols=119  Identities=18%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG  172 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
                      .++.+..++....   ..+.|.|+.|+||||+++.+...+......++.+.+..+... ...        .+. ...   
T Consensus        68 ~~~~l~~~~~~~~---GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q~-~v~---  131 (264)
T cd01129          68 NLEIFRKLLEKPH---GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQV-QVN---  131 (264)
T ss_pred             HHHHHHHHHhcCC---CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eEE-EeC---
Confidence            3455555554332   679999999999999999998877543233344432221110 000        000 000   


Q ss_pred             CcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       173 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                      ..........++..++..+-.++++++.+.+....++....   .|..++-|.+..+.
T Consensus       132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~  186 (264)
T cd01129         132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDA  186 (264)
T ss_pred             CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCH
Confidence            00011245567777888899999999988876655443332   25557777776644

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=97.51  E-value=0.00032  Score=65.35  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=37.7

Q ss_pred             HHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          180 MNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       180 ~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      ...|.+.|-.+|-||+||+-.      ...-++.++..+.   .+ .++|++|+++.++.. +.+++.+
T Consensus       229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~-~lVi~sh~QDfln~v-CT~Ii~l  292 (614)
T KOG0927|consen  229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RI-ILVIVSHSQDFLNGV-CTNIIHL  292 (614)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---Cc-eEEEEecchhhhhhH-hhhhhee
Confidence            335666667789999999753      3334556665554   12 589999999877664 4444444

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.50  E-value=0.00042  Score=60.57  Aligned_cols=37  Identities=22%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        19 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~   55 (252)
T PRK14272         19 AVKNVNLDVQRG----TVNALIGPSGCGKTTFLRAINRMHD   55 (252)
T ss_pred             eeccceEEEcCC----CEEEEECCCCCCHHHHHHHHhccCC
Confidence            455555445555    7899999999999999999998654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.50  E-value=0.00028  Score=59.89  Aligned_cols=27  Identities=41%  Similarity=0.561  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++....+.
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~   40 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLDAPD   40 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccCC
Confidence            789999999999999999999865443

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.50  E-value=0.00036  Score=60.84  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        18 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         18 ALKSINLPIPAR----QVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             eeecceEEecCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            355555555555    7899999999999999999998654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.50  E-value=0.00017  Score=62.57  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=27.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        17 l~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          17 VNNLNLEIAKG----EFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             eeeeEEEECCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34444344445    7899999999999999999997544

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.50  E-value=0.00035  Score=58.44  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=23.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.....
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~   52 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIMQP   52 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999986543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.50  E-value=0.00033  Score=60.61  Aligned_cols=36  Identities=28%  Similarity=0.567  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.
T Consensus        16 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        16 LDDVNLEVPTG----SLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             eeeEEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            44444344455    7899999999999999999997543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.50  E-value=0.00066  Score=56.79  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +++|+|++|+|||||++.++.-
T Consensus        24 ~~~i~G~nGsGKStll~al~~l   45 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIRWV   45 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999998754

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.49  E-value=0.00053  Score=60.53  Aligned_cols=36  Identities=33%  Similarity=0.653  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+.
T Consensus        23 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         23 FDNISLTVPRG----KITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34444444445    7899999999999999999997654

>TIGR01069 mutS2 MutS2 family protein

Probab=97.49  E-value=0.00063  Score=68.45  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++++|+||+|.|||||.+.+...
T Consensus       322 ~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       322 KRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             ceEEEEECCCCCCchHHHHHHHHH
Confidence            378999999999999999999876

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00059  Score=60.83  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        22 l~~vsl~i~~G----e~v~i~G~nGsGKSTLl~~l~Gl~~p   58 (288)
T PRK13643         22 LFDIDLEVKKG----SYTALIGHTGSGKSTLLQHLNGLLQP   58 (288)
T ss_pred             eeeeEEEEcCC----CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            44444444455    78999999999999999999986543

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0013  Score=61.22  Aligned_cols=151  Identities=18%  Similarity=0.200  Sum_probs=81.3

Q ss_pred             cCcccchh---hHHHHHHHHhcCC-------CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDS---RLEKLRFLINKGP-------TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~---~~~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ++..|-++   |+++|.+.|....       .=++=|.++||+|.|||-||+.++....    .-+|+...+++..    
T Consensus       304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----VPFF~~sGSEFdE----  375 (752)
T KOG0734|consen  304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----VPFFYASGSEFDE----  375 (752)
T ss_pred             ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----CCeEeccccchhh----
Confidence            34666664   5777777776432       1156799999999999999999998543    3344432211111    


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcCCCCCC--CCc
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGKHDWFG--IGS  219 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~~~--~g~  219 (373)
                            ++   .+.      ........+...-..-+++|.+|.++..             +.+.+++....-+.  .|.
T Consensus       376 ------m~---VGv------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGi  440 (752)
T KOG0734|consen  376 ------MF---VGV------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGI  440 (752)
T ss_pred             ------hh---hcc------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCce
Confidence                  00   111      1112222333333567899999988532             23555555443222  233


Q ss_pred             EEEEEeCChhhHhh----c-CCCceEeCCCCCHhHHHHHHHHhh
Q 017364          220 RIFITSRDKHLLMA----H-GVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       220 ~iliTtR~~~~~~~----~-~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      -||-.|.-++.++.    . +.+..+.++..+..--.++|..+.
T Consensus       441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl  484 (752)
T KOG0734|consen  441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL  484 (752)
T ss_pred             EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence            23333333332222    1 234456666666666666665554

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.03  Score=48.74  Aligned_cols=173  Identities=18%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             cCcccchhhHHHHHHHHh---------cC-CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLIN---------KG-PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~---------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ...-|-+...+.+....-         .+ ....+-+.++||+|.|||.||+.++......    +|-.     +.    
T Consensus       133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----FFSv-----SS----  199 (439)
T KOG0739|consen  133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----FFSV-----SS----  199 (439)
T ss_pred             hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc----eEEe-----eh----
Confidence            346677766666665432         11 1224679999999999999999999865422    2221     11    


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH---------HHHH----HHhcCC---CCCCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL---------QQLE----SLAGKH---DWFGI  217 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~---------~~l~----~l~~~~---~~~~~  217 (373)
                          ..+.+..+++       .+.++..+.+.. .+++-+|.+|.+++.         +.-+    +|+...   .....
T Consensus       200 ----SDLvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~  268 (439)
T KOG0739|consen  200 ----SDLVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND  268 (439)
T ss_pred             ----HHHHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence                1122222222       112333333332 578899999988631         1111    222222   12234


Q ss_pred             CcEEEEEeCChhhHhhc---CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          218 GSRIFITSRDKHLLMAH---GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       218 g~~iliTtR~~~~~~~~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      |..||-.|.-+-++...   +....|.++-.....-..+|..+.+..  +.....+..+++..++.|+.
T Consensus       269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS  335 (439)
T KOG0739|consen  269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS  335 (439)
T ss_pred             ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence            55555566655443321   122334444334444445676666432  22233445778888888875

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.49  E-value=9.6e-05  Score=68.58  Aligned_cols=37  Identities=30%  Similarity=0.621  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.+...+.
T Consensus        18 vL~~vs~~i~~G----eiv~liGpNGaGKSTLLk~LaGll~   54 (402)
T PRK09536         18 VLDGVDLSVREG----SLVGLVGPNGAGKTTLLRAINGTLT   54 (402)
T ss_pred             EEEeeEEEECCC----CEEEEECCCCchHHHHHHHHhcCCC
Confidence            344444444555    7899999999999999999997544

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=97.49  E-value=0.00039  Score=61.34  Aligned_cols=37  Identities=35%  Similarity=0.615  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|+|++|.|||||++.++..+.
T Consensus        19 ~l~~isl~I~~G----e~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          19 VLENISFSISPG----QRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             ceeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhhhcC
Confidence            355555555556    7899999999999999999998764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.48  E-value=0.00057  Score=60.71  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..+.
T Consensus        23 l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         23 LFDVNLTIEDG----SYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             eeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444445    7899999999999999999997543

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.48  E-value=0.00027  Score=58.96  Aligned_cols=51  Identities=24%  Similarity=0.397  Sum_probs=36.4

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ..|.-..+..+.-.+..+    .+++|.|++|+|||||.+.++..++..-+.+.|
T Consensus        12 ~YG~~~~L~gvsl~v~~G----eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~   62 (237)
T COG0410          12 GYGKIQALRGVSLEVERG----EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF   62 (237)
T ss_pred             cccceeEEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence            445444555555555555    889999999999999999999876655444444

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00058  Score=59.35  Aligned_cols=27  Identities=30%  Similarity=0.597  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++++.|++|+|||||.+.++.-..+.
T Consensus        29 e~vaLlGpSGaGKsTlLRiIAGLe~p~   55 (345)
T COG1118          29 ELVALLGPSGAGKSTLLRIIAGLETPD   55 (345)
T ss_pred             cEEEEECCCCCcHHHHHHHHhCcCCCC
Confidence            889999999999999999999854443

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.48  E-value=0.00031  Score=62.33  Aligned_cols=37  Identities=30%  Similarity=0.593  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        23 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (279)
T PRK13650         23 LNDVSFHVKQG----EWLSIIGHNGSGKSTTVRLIDGLLEA   59 (279)
T ss_pred             eeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44444444455    78999999999999999999986543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.48  E-value=0.00039  Score=61.99  Aligned_cols=38  Identities=26%  Similarity=0.548  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        22 ~l~~vsl~i~~G----e~~~iiG~NGaGKSTLl~~l~Gl~~p   59 (287)
T PRK13641         22 GLDNISFELEEG----SFVALVGHTGSGKSTLMQHFNALLKP   59 (287)
T ss_pred             ceeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            345555445555    78999999999999999999975443

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.48  E-value=0.0002  Score=62.98  Aligned_cols=38  Identities=34%  Similarity=0.551  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~p   56 (262)
T PRK09984         19 ALHAVDLNIHHG----EMVALLGPSGSGKSTLLRHLSGLITG   56 (262)
T ss_pred             EEecceEEEcCC----cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            455555555555    78999999999999999999986643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.47  E-value=0.00026  Score=68.42  Aligned_cols=36  Identities=22%  Similarity=0.691  Sum_probs=27.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+..+    .+++|.|++|+|||||++.++....
T Consensus       276 l~~is~~i~~G----e~~~l~G~NGsGKSTLl~~l~G~~~  311 (500)
T TIGR02633       276 VDDVSFSLRRG----EILGVAGLVGAGRTELVQALFGAYP  311 (500)
T ss_pred             cccceeEEeCC----cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            44444334444    7899999999999999999998665

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=0.00042  Score=61.33  Aligned_cols=38  Identities=42%  Similarity=0.662  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        17 ~l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (274)
T PRK13644         17 ALENINLVIKKG----EYIGIIGKNGSGKSTLALHLNGLLRP   54 (274)
T ss_pred             eeeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            344444445555    78999999999999999999986543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.47  E-value=0.0032  Score=55.45  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=28.4

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .+++++++|++|+||||++..++..+......+.++
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li  106 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA  106 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            468999999999999999999998876554344444

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.47  E-value=0.00082  Score=58.48  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+.-.+.++    .+++|+|++|+|||||++.++...
T Consensus        17 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         17 ALFDINMQIEQN----KITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence            344444444555    789999999999999999999754

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.47  E-value=0.00061  Score=58.20  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        19 ~l~~i~~~i~~G----~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          19 ALDNVSLTIRAG----EKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             cccceEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            344444444555    7899999999999999999997644

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.47  E-value=0.00096  Score=58.83  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        34 il~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         34 ALFDVDLDIPEK----TVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EEEEEEEEEcCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            344444445555    7899999999999999999998764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=97.46  E-value=0.001  Score=57.43  Aligned_cols=25  Identities=28%  Similarity=0.390  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus        26 e~~~i~G~nG~GKStLl~~l~G~~~   50 (235)
T cd03299          26 DYFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            7899999999999999999987544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.46  E-value=0.00028  Score=64.51  Aligned_cols=37  Identities=35%  Similarity=0.588  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        22 l~~isl~i~~G----e~~~llGpsGsGKSTLLr~IaGl~~p   58 (351)
T PRK11432         22 IDNLNLTIKQG----TMVTLLGPSGCGKTTVLRLVAGLEKP   58 (351)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHHCCCCC
Confidence            44444444455    78999999999999999999985543

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00092  Score=58.93  Aligned_cols=36  Identities=19%  Similarity=0.409  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        36 l~~vsl~i~~G----e~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         36 IKGIDMQFEKN----KITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhccC
Confidence            44444444455    7899999999999999999998654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.45  E-value=0.00067  Score=59.28  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        16 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~~   52 (252)
T TIGR03005        16 LDGLNFSVAAG----EKVALIGPSGSGKSTILRILMTLEPI   52 (252)
T ss_pred             EeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34444444455    78999999999999999999986543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.45  E-value=0.00024  Score=71.59  Aligned_cols=39  Identities=28%  Similarity=0.541  Sum_probs=30.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.+|    ..++|+|++|+|||||++.+.+.+.+.
T Consensus       496 vL~~isl~i~~G----e~vaIvG~SGsGKSTLl~lL~gl~~p~  534 (711)
T TIGR00958       496 VLKGLTFTLHPG----EVVALVGPSGSGKSTVAALLQNLYQPT  534 (711)
T ss_pred             cccCceEEEcCC----CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence            355555555556    789999999999999999999866543

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00049  Score=58.90  Aligned_cols=39  Identities=28%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ++.+...+..+    ..++|.|++|+|||||++.+..-+.+..
T Consensus        20 l~~v~~~i~~G----e~~~i~G~nGsGKSTL~~~l~GLl~p~~   58 (235)
T COG1122          20 LKDVSLEIEKG----ERVLLIGPNGSGKSTLLKLLNGLLKPTS   58 (235)
T ss_pred             eeeeEEEECCC----CEEEEECCCCCCHHHHHHHHcCcCcCCC
Confidence            44444444445    6899999999999999999988665544

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=97.44  E-value=0.00027  Score=64.30  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++...++
T Consensus        20 ~L~~vsl~i~~G----ei~gIiG~sGaGKSTLlr~I~gl~~p   57 (343)
T TIGR02314        20 ALNNVSLHVPAG----QIYGVIGASGAGKSTLIRCVNLLERP   57 (343)
T ss_pred             EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            355555445555    78999999999999999999875443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.44  E-value=0.00031  Score=69.17  Aligned_cols=38  Identities=24%  Similarity=0.555  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ++.+.-.+.++    ..++|+|++|+|||||++.+.....+.
T Consensus       348 l~~inl~i~~G----~~v~IvG~sGsGKSTLl~lL~gl~~~~  385 (571)
T TIGR02203       348 LDSISLVIEPG----ETVALVGRSGSGKSTLVNLIPRFYEPD  385 (571)
T ss_pred             ccCeeEEecCC----CEEEEECCCCCCHHHHHHHHHhccCCC
Confidence            44444444445    779999999999999999999866543

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.44  E-value=0.00025  Score=64.95  Aligned_cols=26  Identities=35%  Similarity=0.554  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++....+
T Consensus        31 e~~~l~GpsGsGKSTLLr~iaGl~~p   56 (353)
T TIGR03265        31 EFVCLLGPSGCGKTTLLRIIAGLERQ   56 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            78999999999999999999986543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK07667 uridine kinase; Provisional

Probab=97.44  E-value=0.00037  Score=58.16  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +.+.+.+........+|+|.|++|+||||+|..+...+...
T Consensus         4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~   44 (193)
T PRK07667          4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE   44 (193)
T ss_pred             HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            44555565555556899999999999999999999987654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.44  E-value=0.0005  Score=67.95  Aligned_cols=35  Identities=29%  Similarity=0.541  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++.+.-.+.+|    ..++|+|++|+|||||++.+...+
T Consensus       366 L~~i~l~i~~G----~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        366 AGPLNFTLPAG----QRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCC
Confidence            44444444455    789999999999999999998876

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.00055  Score=59.85  Aligned_cols=36  Identities=19%  Similarity=0.409  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        21 il~~is~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         21 ALHDISLEFEQN----QVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eecceeEEEeCC----CEEEEECCCCCCHHHHHHHHHhhc
Confidence            345555445555    789999999999999999999754

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.44  E-value=8.1e-05  Score=61.71  Aligned_cols=21  Identities=33%  Similarity=0.184  Sum_probs=18.9

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      +++|+|++|.||||+++.+..
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            368999999999999999984

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.00047  Score=60.56  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        22 il~~is~~i~~G----e~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (261)
T PRK14258         22 ILEGVSMEIYQS----KVTAIIGPSGCGKSTFLKCLNRMNEL   59 (261)
T ss_pred             EeeceEEEEcCC----cEEEEECCCCCCHHHHHHHHhcccCC
Confidence            455555555556    78999999999999999999987553

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.43  E-value=0.00066  Score=56.94  Aligned_cols=36  Identities=42%  Similarity=0.720  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        16 l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        16 FEGLSFTLNAG----EALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             EeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            44444444455    7899999999999999999988644

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.43  E-value=0.00074  Score=59.41  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++...
T Consensus        25 il~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         25 AVKNVWLDIPKN----QITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             EeecceEEEcCC----CEEEEECCCCCCHHHHHHHHHhhh
Confidence            455555555555    789999999999999999999754

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.43  E-value=0.00052  Score=60.03  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        19 ~l~~is~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         19 VIKGVDLKIPQN----GVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhccCCc
Confidence            455555555555    78999999999999999999986543

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.43  E-value=0.00018  Score=72.53  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=29.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.+|    ..++|+|++|+|||||++.++..+.+.
T Consensus       480 vL~~i~l~i~~G----~~iaIvG~sGsGKSTLlklL~gl~~p~  518 (694)
T TIGR03375       480 ALDNVSLTIRPG----EKVAIIGRIGSGKSTLLKLLLGLYQPT  518 (694)
T ss_pred             ceeeeeEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            345555445555    779999999999999999998765543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00041  Score=65.49  Aligned_cols=37  Identities=27%  Similarity=0.588  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +..+.-.+.++    +.++|+|++|+|||||+..+.....+
T Consensus       337 l~~l~~t~~~g----~~talvG~SGaGKSTLl~lL~G~~~~  373 (559)
T COG4988         337 LSDLNLTIKAG----QLTALVGASGAGKSTLLNLLLGFLAP  373 (559)
T ss_pred             cCCceeEecCC----cEEEEECCCCCCHHHHHHHHhCcCCC
Confidence            33444344444    78999999999999999999986553

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=97.42  E-value=0.00097  Score=58.81  Aligned_cols=37  Identities=32%  Similarity=0.559  Sum_probs=28.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        27 il~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419         27 VLNNVSLSLKSG----ETVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             eEeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345555555555    7899999999999999999997543

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.42  E-value=0.00035  Score=67.66  Aligned_cols=25  Identities=36%  Similarity=0.753  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus       290 e~~~l~G~NGsGKSTLl~~i~Gl~~  314 (510)
T PRK15439        290 EILGLAGVVGAGRTELAETLYGLRP  314 (510)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCC
Confidence            7899999999999999999997544

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.42  E-value=0.0005  Score=59.37  Aligned_cols=45  Identities=20%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             HHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEe
Q 017364           99 FLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLA  143 (373)
Q Consensus        99 ~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~  143 (373)
                      ..|..+-....++.|+|++|+|||+|+..++......      ...++|+.
T Consensus        10 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~   60 (235)
T cd01123          10 ELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID   60 (235)
T ss_pred             hhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence            3444333335899999999999999999998653222      24666765

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00042  Score=61.04  Aligned_cols=38  Identities=34%  Similarity=0.487  Sum_probs=30.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++.....
T Consensus        22 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~~~   59 (265)
T PRK10253         22 VAENLTVEIPDG----HFTAIIGPNGCGKSTLLRTLSRLMTP   59 (265)
T ss_pred             EeeecceEECCC----CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            455555555555    78999999999999999999986543

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00061  Score=59.83  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+.
T Consensus        28 il~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         28 ALKNINLDIAKN----QVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             EeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhcccc
Confidence            455555555555    7899999999999999999997654

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=97.41  E-value=0.00067  Score=62.36  Aligned_cols=25  Identities=40%  Similarity=0.567  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus        24 ei~~l~G~nGsGKSTLl~~iaGl~~   48 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIAGLTR   48 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999998654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.41  E-value=0.0011  Score=55.98  Aligned_cols=39  Identities=33%  Similarity=0.582  Sum_probs=31.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ++.+...+..+    ..++|+|.+|.|||||.+.++.-+.+.-
T Consensus        43 L~disf~i~~G----e~vGiiG~NGaGKSTLlkliaGi~~Pt~   81 (249)
T COG1134          43 LKDISFEIYKG----ERVGIIGHNGAGKSTLLKLIAGIYKPTS   81 (249)
T ss_pred             ecCceEEEeCC----CEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence            55555555556    6799999999999999999998777653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.41  E-value=0.00019  Score=69.41  Aligned_cols=38  Identities=24%  Similarity=0.496  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|+|++|+|||||++.++....+
T Consensus        19 ~l~~is~~i~~G----e~~~l~G~NGsGKSTLl~~l~G~~~p   56 (501)
T PRK10762         19 ALSGAALNVYPG----RVMALVGENGAGKSTMMKVLTGIYTR   56 (501)
T ss_pred             EeeeeeEEEcCC----eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            345555445555    88999999999999999999986543

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.41  E-value=0.0014  Score=52.21  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=61.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHH----hCCC-----CCCCc---ch
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQL----LNLP-----DSGVW---NV  176 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~---~~  176 (373)
                      ..|-|++.+|.||||+|...+-+...+...+.++.-..... ..+-...+..+ ..+    .+..     .....   ..
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a   80 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence            46788888999999999998887665555555543222111 11222222221 000    0000     00000   11


Q ss_pred             hhhHHHHHHhhC-CCceEEEecccc--------cHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364          177 YDGMNMIRSRLR-HKKVLLVIDDVI--------ELQQLESLAGKHDWFGIGSRIFITSRDKH  229 (373)
Q Consensus       177 ~~~~~~l~~~l~-~~~~LlvlDdv~--------~~~~l~~l~~~~~~~~~g~~iliTtR~~~  229 (373)
                      .......++.+. +.--|||||++-        +.+.+-+++...+   .+..+|+|.|+..
T Consensus        81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp---~~~evIlTGr~~p  139 (159)
T cd00561          81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP---EDLELVLTGRNAP  139 (159)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC---CCCEEEEECCCCC
Confidence            112233344443 455699999873        3344555555443   3667999999874

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00099  Score=58.17  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        20 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         20 LNDINLPIYEN----KITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eeceeEEEcCC----CEEEEECCCCCCHHHHHHHHHhccC
Confidence            44444444455    7899999999999999999998643

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.40  E-value=0.00018  Score=71.14  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.++..+.+.
T Consensus       356 il~~i~l~i~~G----e~iaIvG~SGsGKSTLl~lL~gl~~p~  394 (592)
T PRK10790        356 VLQNINLSVPSR----GFVALVGHTGSGKSTLASLLMGYYPLT  394 (592)
T ss_pred             eeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            345555445555    789999999999999999999876554

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.40  E-value=0.0013  Score=59.89  Aligned_cols=99  Identities=18%  Similarity=0.270  Sum_probs=55.1

Q ss_pred             eEEEEEeccCCcchhH-HHHHHHHHH-hccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH
Q 017364          108 VRMIGICGMGGIGKTT-LARVVYDLI-SHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS  185 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTt-La~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (373)
                      .++++++||.|+|||| ||+..+.-. ...-..+.++.    .+.+.--..-+-+.+..+++.+-....+..++...+..
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~  278 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA  278 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence            4899999999999997 555544433 23333444443    22223333334455666677665555566665554444


Q ss_pred             hhCCCceEEEeccc-------ccHHHHHHHhcCC
Q 017364          186 RLRHKKVLLVIDDV-------IELQQLESLAGKH  212 (373)
Q Consensus       186 ~l~~~~~LlvlDdv-------~~~~~l~~l~~~~  212 (373)
                      . .+. =++++|-+       .....++.+....
T Consensus       279 l-~~~-d~ILVDTaGrs~~D~~~i~el~~~~~~~  310 (407)
T COG1419         279 L-RDC-DVILVDTAGRSQYDKEKIEELKELIDVS  310 (407)
T ss_pred             h-hcC-CEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence            2 333 46667844       2344556665543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.40  E-value=0.00028  Score=59.40  Aligned_cols=23  Identities=30%  Similarity=0.236  Sum_probs=21.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+++|+|++|.|||||++.++..
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHH
Confidence            78999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.40  E-value=0.00031  Score=68.63  Aligned_cols=39  Identities=31%  Similarity=0.552  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.++....+.
T Consensus       333 ~l~~~~~~i~~G----~~~~ivG~sGsGKSTL~~ll~g~~~~~  371 (544)
T TIGR01842       333 TLRGISFRLQAG----EALAIIGPSGSGKSTLARLIVGIWPPT  371 (544)
T ss_pred             ccccceEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            355555455555    789999999999999999999865443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.40  E-value=0.00035  Score=60.82  Aligned_cols=37  Identities=30%  Similarity=0.429  Sum_probs=31.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeec
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANV  145 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~  145 (373)
                      +.++|.|.+|+|||||+..++..++.+|...+++..+
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~i  106 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGV  106 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEe
Confidence            7899999999999999999999988777766766544

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PLN03073 ABC transporter F family; Provisional

Probab=97.40  E-value=0.00033  Score=70.04  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..++.+.-.+..+    ..++|+|++|+|||||++.++..
T Consensus       191 ~ll~~isl~i~~G----e~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        191 DLIVDASVTLAFG----RHYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             EEEECCEEEECCC----CEEEEECCCCCCHHHHHHHHcCC
Confidence            3555555555555    78999999999999999999864

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00049  Score=60.40  Aligned_cols=43  Identities=23%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.|+...++.+...+.++    .+++|.|++|+|||||++.++..+.
T Consensus        17 ~~~~~~~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   59 (261)
T PRK14263         17 FYGNFMAVRDSHVPIRKN----EITGFIGPSGCGKSTVLRSLNRMND   59 (261)
T ss_pred             EeCCEEEEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHcccc
Confidence            345444556665555666    7899999999999999999987653

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.39  E-value=0.00035  Score=64.44  Aligned_cols=37  Identities=30%  Similarity=0.551  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+..+    .+++|.|++|+|||||++.++.....
T Consensus        30 l~~vsl~i~~G----e~~~LlGpsGsGKSTLLr~IaGl~~p   66 (375)
T PRK09452         30 ISNLDLTINNG----EFLTLLGPSGCGKTTVLRLIAGFETP   66 (375)
T ss_pred             EeeeEEEEeCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            34444444444    78999999999999999999985443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.00037  Score=67.35  Aligned_cols=25  Identities=24%  Similarity=0.703  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus       280 e~~~iiG~NGsGKSTLlk~l~G~~~  304 (501)
T PRK11288        280 EIVGLFGLVGAGRSELMKLLYGATR  304 (501)
T ss_pred             cEEEEEcCCCCCHHHHHHHHcCCCc
Confidence            6899999999999999999997654

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.39  E-value=0.0064  Score=57.08  Aligned_cols=41  Identities=17%  Similarity=0.366  Sum_probs=32.4

Q ss_pred             hHHHHHHHHh-----cCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLIN-----KGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      -+.++..||.     ...-+.+++.|+||+|+||||-++.++..+.
T Consensus        90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg  135 (634)
T KOG1970|consen   90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG  135 (634)
T ss_pred             hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence            3677777777     3334468999999999999999999988654

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.39  E-value=0.00053  Score=60.84  Aligned_cols=39  Identities=33%  Similarity=0.607  Sum_probs=29.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+..+    .+++|.|++|.|||||++.++....+.
T Consensus        22 ~l~~vsl~i~~G----e~~~i~G~nGaGKSTLl~~i~G~~~p~   60 (279)
T PRK13635         22 ALKDVSFSVYEG----EWVAIVGHNGSGKSTLAKLLNGLLLPE   60 (279)
T ss_pred             ceeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            344444444555    789999999999999999999865443

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.00044  Score=60.67  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        19 ~l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         19 AVEDVNLNIEPR----SVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             eeeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhccCC
Confidence            344554445555    7899999999999999999998654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.00046  Score=60.46  Aligned_cols=41  Identities=32%  Similarity=0.493  Sum_probs=31.1

Q ss_pred             cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      |....++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        21 ~~~~~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~iaG~~~   61 (257)
T PRK14246         21 NDKAILKDITIKIPNN----SIFGIMGPSGSGKSTLLKVLNRLIE   61 (257)
T ss_pred             CCceeEeceEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4334456666555555    7899999999999999999997543

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.00045  Score=60.30  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..
T Consensus        19 l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         19 LKGISMEIEEK----SVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EeeeeEEEeCC----CEEEEECCCCCCHHHHHHHHhhh
Confidence            44444444555    78999999999999999999863

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.0011  Score=58.59  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        35 ~l~~vs~~i~~G----e~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         35 ALVDVHLKIPAK----KIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EEeeeeeEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence            455555555555    789999999999999999998654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.001  Score=58.79  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        40 l~~vsl~i~~G----e~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         40 LKNINLDIHEN----EVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            44444444445    7899999999999999999998764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.39  E-value=0.00015  Score=70.56  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.+|    ..++|+|++|+|||||++.+...+.+.
T Consensus       350 vL~~isl~i~~G----~~vaIvG~SGsGKSTLl~lL~g~~~p~  388 (529)
T TIGR02868       350 VLDGVSLDLPPG----ERVAILGPSGSGKSTLLMLLTGLLDPL  388 (529)
T ss_pred             eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            355555455555    789999999999999999998765543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=0.0003  Score=68.07  Aligned_cols=38  Identities=29%  Similarity=0.704  Sum_probs=30.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        20 il~~isl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (506)
T PRK13549         20 ALDNVSLKVRAG----EIVSLCGENGAGKSTLMKVLSGVYPH   57 (506)
T ss_pred             eecceeEEEeCC----eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            455555555555    78999999999999999999986653

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.38  E-value=0.0012  Score=57.61  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        20 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256         20 VKDVSMDFPEN----SVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             EecceEEEcCC----CEEEEECCCCCCHHHHHHHHHhccc
Confidence            44444444555    7899999999999999999998653

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.38  E-value=0.00065  Score=60.40  Aligned_cols=37  Identities=27%  Similarity=0.575  Sum_probs=28.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....+
T Consensus        23 l~~v~l~i~~G----e~~~I~G~nGaGKSTLl~~l~G~~~p   59 (282)
T PRK13640         23 LNDISFSIPRG----SWTALIGHNGSGKSTISKLINGLLLP   59 (282)
T ss_pred             eeeEEEEEcCC----CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            44444444445    78999999999999999999987644

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.38  E-value=0.00021  Score=71.96  Aligned_cols=39  Identities=36%  Similarity=0.600  Sum_probs=29.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.++....+.
T Consensus       472 il~~i~l~i~~G----~~vaivG~sGsGKSTL~~ll~g~~~p~  510 (694)
T TIGR01846       472 VLSNLNLDIKPG----EFIGIVGPSGSGKSTLTKLLQRLYTPQ  510 (694)
T ss_pred             ccccceEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            344444444455    789999999999999999999865443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.37  E-value=0.00058  Score=59.61  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=27.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        18 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         18 ALKKINLDIEEN----QVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             eeecceEEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence            344444444555    789999999999999999998753

>PRK14974 cell division protein FtsY; Provisional

Probab=97.37  E-value=0.0036  Score=56.62  Aligned_cols=35  Identities=20%  Similarity=0.175  Sum_probs=27.5

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ++.+++++|++|+||||++..++..+......+.+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l  173 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI  173 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            36899999999999999999999877655333333

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.37  E-value=0.00078  Score=57.60  Aligned_cols=49  Identities=10%  Similarity=0.114  Sum_probs=32.2

Q ss_pred             HHHHHHhhCCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364          180 MNMIRSRLRHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKH  229 (373)
Q Consensus       180 ~~~l~~~l~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~  229 (373)
                      ...+...|-+++-+|.||..      -....+..++..+.. ..++.|+.||++-.
T Consensus       164 raeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~-~~~aTVllTTH~~~  218 (325)
T COG4586         164 RAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE-ERQATVLLTTHIFD  218 (325)
T ss_pred             HHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHH-hhCceEEEEecchh
Confidence            34455666777888899954      334456666655432 34788999999864

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00047  Score=60.86  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++...
T Consensus        36 il~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         36 AVNDISMDIEKH----AVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             eeeceEEEEcCC----CEEEEECCCCCCHHHHHHHHHhcc
Confidence            455555555555    789999999999999999998753

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00045  Score=61.21  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=29.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        36 il~~vs~~i~~G----e~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         36 VLDQVSMGFPAR----AVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             EeeeeEEEEcCC----cEEEEECCCCCCHHHHHHHHhccCC
Confidence            455555555555    7899999999999999999998654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.0012  Score=57.54  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        19 l~~i~~~i~~G----e~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         19 VKNVTMKIFKN----QITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             EeeeeEeecCC----CEEEEECCCCCCHHHHHHHHhcccc
Confidence            44454445555    7899999999999999999997543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.36  E-value=0.00029  Score=59.04  Aligned_cols=24  Identities=29%  Similarity=0.221  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++++|+|++|.|||||++.+...+
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            789999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.35  E-value=0.0018  Score=59.15  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=24.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..+++++|++|+||||++..++......
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~  164 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMR  164 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4799999999999999999999876444

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=97.35  E-value=0.0011  Score=55.86  Aligned_cols=58  Identities=16%  Similarity=0.314  Sum_probs=34.3

Q ss_pred             HHHhhCCCceEEEecccc------cHH-HHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeCC
Q 017364          183 IRSRLRHKKVLLVIDDVI------ELQ-QLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMHE  243 (373)
Q Consensus       183 l~~~l~~~~~LlvlDdv~------~~~-~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l~  243 (373)
                      +.+.+...+-++++|+..      ... .+..++..+.. ..+..||++|++......  .+.++.++
T Consensus       132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~-~~~~~iiiitH~~~~~~~--~d~i~~l~  196 (204)
T cd03240         132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKS-QKNFQLIVITHDEELVDA--ADHIYRVE  196 (204)
T ss_pred             HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-ccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence            455566788899999763      223 34344433321 114569999998876543  55566553

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.35  E-value=0.0013  Score=57.57  Aligned_cols=37  Identities=16%  Similarity=0.460  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++.....
T Consensus        19 l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~~   55 (254)
T PRK10418         19 VHGVSLTLQRG----RVLALVGGSGSGKSLTCAAALGILPA   55 (254)
T ss_pred             ecceEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999986554

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00054  Score=66.31  Aligned_cols=25  Identities=28%  Similarity=0.687  Sum_probs=22.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus       289 e~~~l~G~NGsGKSTLlk~i~Gl~~  313 (506)
T PRK13549        289 EILGIAGLVGAGRTELVQCLFGAYP  313 (506)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999998654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.00024  Score=68.83  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=29.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        20 il~~vs~~i~~G----e~~~liG~nGsGKSTLl~~i~Gl~~   56 (510)
T PRK09700         20 ALKSVNLTVYPG----EIHALLGENGAGKSTLMKVLSGIHE   56 (510)
T ss_pred             EeeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHcCCcC
Confidence            455555555555    7899999999999999999987554

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.35  E-value=0.0019  Score=56.73  Aligned_cols=36  Identities=25%  Similarity=0.461  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        28 l~~vs~~i~~G----e~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         28 LKNINLSIPEN----EVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhhcc
Confidence            44444444445    7899999999999999999998654

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.35  E-value=0.0011  Score=60.96  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=29.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ..++.|.|++|+|||||+.+++.........++|+.
T Consensus        82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs  117 (372)
T cd01121          82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS  117 (372)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            378999999999999999999988766545555653

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00057  Score=60.91  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+..
T Consensus        22 ~l~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~L~Gl~~p   59 (286)
T PRK13646         22 AIHDVNTEFEQG----KYYAIVGQTGSGKSTLIQNINALLKP   59 (286)
T ss_pred             ceeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            345554445555    78999999999999999999986543

>COG3910 Predicted ATPase [General function prediction only]

Probab=97.34  E-value=0.0022  Score=51.80  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++..|+|.+|+|||||...++-.
T Consensus        38 pIT~i~GENGsGKSTLLEaiA~~   60 (233)
T COG3910          38 PITFITGENGSGKSTLLEAIAAG   60 (233)
T ss_pred             ceEEEEcCCCccHHHHHHHHHhh
Confidence            89999999999999999998853

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.34  E-value=0.0007  Score=59.33  Aligned_cols=36  Identities=31%  Similarity=0.739  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.
T Consensus        37 l~~isl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   72 (257)
T cd03288          37 LKHVKAYIKPG----QKVGICGRTGSGKSSLSLAFFRMVD   72 (257)
T ss_pred             eeEEEEEEcCC----CEEEEECCCCCCHHHHHHHHHcccC
Confidence            44444444455    7899999999999999999998654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.34  E-value=0.00041  Score=67.06  Aligned_cols=25  Identities=32%  Similarity=0.800  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+|||||++.++....
T Consensus       279 e~~~liG~NGsGKSTLl~~l~G~~~  303 (501)
T PRK10762        279 EILGVSGLMGAGRTELMKVLYGALP  303 (501)
T ss_pred             cEEEEecCCCCCHHHHHHHHhCCCC
Confidence            6899999999999999999997554

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.34  E-value=0.00027  Score=69.38  Aligned_cols=39  Identities=36%  Similarity=0.692  Sum_probs=29.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.++....+.
T Consensus       330 ~l~~i~~~i~~G----~~~~ivG~sGsGKSTLl~ll~g~~~p~  368 (569)
T PRK10789        330 ALENVNFTLKPG----QMLGICGPTGSGKSTLLSLIQRHFDVS  368 (569)
T ss_pred             cccCeeEEECCC----CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            344444444555    789999999999999999998765443

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.0015  Score=57.16  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=27.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..
T Consensus        21 ~l~~vs~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         21 ALYDITISIPKN----RVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             eeeeeEEEECCC----cEEEEECCCCCCHHHHHHHHhcc
Confidence            344444444455    78999999999999999999864

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.0015  Score=57.14  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=26.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+...+.++    .+++|.|++|+|||||++.++..
T Consensus        21 l~~~s~~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         21 LNSVSLDFYPN----EITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             eeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHhcc
Confidence            44444444455    78999999999999999999864

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.34  E-value=0.00086  Score=60.04  Aligned_cols=36  Identities=31%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+++-|+|++|+||||||..++.........++|+.
T Consensus        55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId   90 (325)
T cd00983          55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID   90 (325)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            488999999999999999999887766666677764

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.33  E-value=0.00078  Score=60.27  Aligned_cols=37  Identities=30%  Similarity=0.284  Sum_probs=30.3

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ..+++.|+|++|+||||||..++.........++|+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId   90 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID   90 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence            3489999999999999999998887766656666764

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.33  E-value=0.00058  Score=60.76  Aligned_cols=37  Identities=30%  Similarity=0.486  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+..+    .+++|.|++|.|||||++.++....
T Consensus        21 ~l~~vs~~i~~G----e~~~i~G~nGaGKSTLl~~i~Gl~~   57 (283)
T PRK13636         21 ALKGININIKKG----EVTAILGGNGAGKSTLFQNLNGILK   57 (283)
T ss_pred             eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            455555555555    7899999999999999999997543

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.33  E-value=0.00053  Score=56.85  Aligned_cols=33  Identities=24%  Similarity=0.154  Sum_probs=26.6

Q ss_pred             EEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          111 IGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +.|.|++|+|||+|+.+++.........+.|+.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            689999999999999999887655555666664

A related protein is found in archaea.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0033  Score=60.69  Aligned_cols=150  Identities=20%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCC
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRH  189 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  189 (373)
                      -|.++|++|+|||-||..++....-.     |+. +   .   +     -+++....+.      +.......+.+.-.-
T Consensus       703 giLLyGppGcGKT~la~a~a~~~~~~-----fis-v---K---G-----PElL~KyIGa------SEq~vR~lF~rA~~a  759 (952)
T KOG0735|consen  703 GILLYGPPGCGKTLLASAIASNSNLR-----FIS-V---K---G-----PELLSKYIGA------SEQNVRDLFERAQSA  759 (952)
T ss_pred             ceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e---c---C-----HHHHHHHhcc------cHHHHHHHHHHhhcc
Confidence            48899999999999999988754322     221 1   0   0     1233333222      122233334444467


Q ss_pred             CceEEEecccccHH-------------HHHHHhcCCCC--CCCCcEEEE-EeCChhh----HhhcCCCceEeCCCCCHhH
Q 017364          190 KKVLLVIDDVIELQ-------------QLESLAGKHDW--FGIGSRIFI-TSRDKHL----LMAHGVDEVYMHEHLNYDE  249 (373)
Q Consensus       190 ~~~LlvlDdv~~~~-------------~l~~l~~~~~~--~~~g~~ili-TtR~~~~----~~~~~~~~~~~l~~L~~~e  249 (373)
                      ++++|.||.+++..             ...+++..+.-  .-.|..|+. |||..-.    +..-+.++.+.-+..++.|
T Consensus       760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e  839 (952)
T KOG0735|consen  760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE  839 (952)
T ss_pred             CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence            89999999986522             34455544420  012555554 5554311    1112234555566778888


Q ss_pred             HHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          250 ALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       250 a~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      -.+.+..........   .....+.++.++.|..-|
T Consensus       840 Rl~il~~ls~s~~~~---~~vdl~~~a~~T~g~tgA  872 (952)
T KOG0735|consen  840 RLEILQVLSNSLLKD---TDVDLECLAQKTDGFTGA  872 (952)
T ss_pred             HHHHHHHHhhccCCc---cccchHHHhhhcCCCchh
Confidence            888887665322111   122367788888888765

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.32  E-value=0.00064  Score=66.07  Aligned_cols=36  Identities=33%  Similarity=0.627  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        15 ~l~~is~~i~~G----e~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269        15 VLKNISFTIEEG----EVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             eeeceeEEEcCC----CEEEEECCCCCCHHHHHHHHhhcc
Confidence            345555455555    789999999999999999999875

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.00059  Score=65.81  Aligned_cols=26  Identities=19%  Similarity=0.569  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++....+
T Consensus       275 e~~~l~G~nGsGKSTLl~~l~Gl~~p  300 (491)
T PRK10982        275 EILGIAGLVGAKRTDIVETLFGIREK  300 (491)
T ss_pred             cEEEEecCCCCCHHHHHHHHcCCCcC
Confidence            78999999999999999999976543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.32  E-value=0.0025  Score=57.89  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=27.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .++++|+|++|+||||++..++..+......+.++
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI  240 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI  240 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            58999999999999999999988765443344444

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.32  E-value=0.00069  Score=60.01  Aligned_cols=37  Identities=30%  Similarity=0.516  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        17 ~l~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~i~Gl~~   53 (275)
T PRK13639         17 ALKGINFKAEKG----EMVALLGPNGAGKSTLFLHFNGILK   53 (275)
T ss_pred             eeeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            344444444555    7899999999999999999997543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=97.32  E-value=0.00051  Score=63.42  Aligned_cols=36  Identities=28%  Similarity=0.550  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.-..
T Consensus        35 l~~vsl~i~~G----e~~~llGpsGsGKSTLLr~IaGl~~   70 (377)
T PRK11607         35 VDDVSLTIYKG----EIFALLGASGCGKSTLLRMLAGFEQ   70 (377)
T ss_pred             EeeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            33344334444    7899999999999999999997543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.32  E-value=0.00033  Score=69.01  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    ..++|+|++|+|||||++.++....+
T Consensus       351 l~~i~~~i~~G----~~~~ivG~sGsGKSTL~~ll~g~~~~  387 (585)
T TIGR01192       351 VFDVSFEAKAG----QTVAIVGPTGAGKTTLINLLQRVYDP  387 (585)
T ss_pred             ccceeEEEcCC----CEEEEECCCCCCHHHHHHHHccCCCC
Confidence            44444444455    78999999999999999999876544

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00092  Score=59.68  Aligned_cols=37  Identities=30%  Similarity=0.445  Sum_probs=28.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|.|||||++.++..+.+
T Consensus        23 L~~vsl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (290)
T PRK13634         23 LYDVNVSIPSG----SYVAIIGHTGSGKSTLLQHLNGLLQP   59 (290)
T ss_pred             eeeEEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            44444444555    78999999999999999999986543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.0014  Score=58.35  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=28.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++...
T Consensus        54 il~~vsl~i~~G----e~~~l~G~nGsGKSTLl~~L~Gl~   89 (286)
T PRK14275         54 AVKKVNADILSK----YVTAIIGPSGCGKSTFLRAINRMN   89 (286)
T ss_pred             EEeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhccc
Confidence            344444445555    789999999999999999999853

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.31  E-value=0.00031  Score=55.03  Aligned_cols=27  Identities=33%  Similarity=0.407  Sum_probs=24.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++|+|++|+||||++..+++.++..
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            568999999999999999999988766

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.31  E-value=0.012  Score=55.15  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+.++.++|++|+||||++..++..+...
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~  122 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK  122 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.31  E-value=0.00024  Score=68.47  Aligned_cols=38  Identities=18%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....+
T Consensus        13 il~~vs~~i~~G----e~~~liG~nGsGKSTLl~~l~Gl~~p   50 (491)
T PRK10982         13 ALDNVNLKVRPH----SIHALMGENGAGKSTLLKCLFGIYQK   50 (491)
T ss_pred             eeeeeeEEEcCC----cEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            344454445555    78999999999999999999986543

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.31  E-value=0.0008  Score=55.02  Aligned_cols=28  Identities=32%  Similarity=0.465  Sum_probs=24.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      +.+.++|.+|+||||+|++++..+++..
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i   29 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEI   29 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence            5688999999999999999999877653

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.31  E-value=0.00083  Score=59.51  Aligned_cols=39  Identities=31%  Similarity=0.525  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++..+.+.
T Consensus        52 vL~~vs~~i~~G----e~~~liG~NGsGKSTLl~~I~Gl~~p~   90 (282)
T cd03291          52 VLKNINLKIEKG----EMLAITGSTGSGKTSLLMLILGELEPS   90 (282)
T ss_pred             ceeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            344444444455    789999999999999999999876544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.0017  Score=57.48  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++....
T Consensus        40 il~~vs~~i~~G----e~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         40 ALFDISMRIPKN----RVTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             EeeeEEEEEcCC----CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345554445555    7899999999999999999987644

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.30  E-value=0.0016  Score=60.60  Aligned_cols=26  Identities=35%  Similarity=0.625  Sum_probs=23.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.+...+.+
T Consensus        55 ei~~LvG~NGsGKSTLLr~I~Gl~~p   80 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLNRLIEP   80 (400)
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCC
Confidence            78999999999999999999986543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.30  E-value=0.0012  Score=60.52  Aligned_cols=26  Identities=38%  Similarity=0.626  Sum_probs=23.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.....
T Consensus        29 e~~~llGpsGsGKSTLLr~IaGl~~p   54 (353)
T PRK10851         29 QMVALLGPSGSGKTTLLRIIAGLEHQ   54 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999999985443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.30  E-value=0.00028  Score=68.15  Aligned_cols=37  Identities=24%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        19 il~~isl~i~~G----e~~~l~G~nGsGKSTLl~~l~Gl~~   55 (501)
T PRK11288         19 ALDDISFDCRAG----QVHALMGENGAGKSTLLKILSGNYQ   55 (501)
T ss_pred             EEeeeeEEEeCC----cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345555445555    7899999999999999999997544

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.30  E-value=0.00026  Score=66.24  Aligned_cols=46  Identities=20%  Similarity=0.166  Sum_probs=40.7

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++||++.++.+...+..+    ..|.|.|++|+|||+||+.+......
T Consensus        20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~   65 (498)
T PRK13531         20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN   65 (498)
T ss_pred             hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence            46999999999999988877    45999999999999999999987643

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00058  Score=59.65  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.-.+.++    .+++|.|++|+|||||++.++....
T Consensus        19 ~l~~~sl~i~~G----e~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         19 ALHGISLDFEEK----ELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             eeeeeeEEEcCC----CEEEEECCCCCCHHHHHHHHhhccc
Confidence            344444444455    7899999999999999999998654

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.00033  Score=67.68  Aligned_cols=38  Identities=29%  Similarity=0.565  Sum_probs=31.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.+|    .+|+++||+|.||||+|..+.+-+.+
T Consensus       483 Vlk~lsfti~pG----e~vALVGPSGsGKSTiasLL~rfY~P  520 (716)
T KOG0058|consen  483 VLKNLSFTIRPG----EVVALVGPSGSGKSTIASLLLRFYDP  520 (716)
T ss_pred             hhcCceeeeCCC----CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            577777777777    78999999999999999888775443

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=97.29  E-value=0.0098  Score=57.62  Aligned_cols=47  Identities=19%  Similarity=0.117  Sum_probs=34.6

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..++|....++.+...+..-......|.|+|.+|+||+.+|+.+...
T Consensus       204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~  250 (520)
T PRK10820        204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR  250 (520)
T ss_pred             cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence            46899888777777666532222255889999999999999996543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	373
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-09
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		1e-07

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
           +I PIFY ++P+ VR QT  +K+AF KH   F  + + +Q W+D+LK+V ++ GW +   
Sbjct: 125 IILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGKN 182
Query: 61  NEPEFIVDIV 70
           ++   I D V
Sbjct: 183 DKQGAIADKV 192

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 2   IFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRN 61
           + PIFY +EP  VR QT    E F KH  A RE+ EKV KWR +L   A +SG +    +
Sbjct: 98  VMPIFYGVEPNHVRWQTGVLAEQFKKH--ASREDPEKVLKWRQALTNFAQLSG-DCSGDD 154
Query: 62  EPEFIVDIVKEISCK 76
           + + +  I  EIS K
Sbjct: 155 DSKLVDKIANEISNK 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-41
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-37
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	6e-31
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-30
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-25
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	1e-10

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  151 bits (383), Expect = 2e-41
 Identities = 55/365 (15%), Positives = 94/365 (25%), Gaps = 36/365 (9%)

Query: 13  TVRKQTASFKEAFLKHEEAFRENIE----KVQKWRDSLKEVANISGWELKDRNEPEFIVD 68
           T  ++ A+F   + +        I+      Q       E          D   P  I  
Sbjct: 49  TRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAP 108

Query: 69  IVKEISCKISAKS---ETLKELVGLDSRLEKLR-FLINKGPTDVRMIGICGMGGIGKTTL 124
                                    +  ++++   L      D   + + G  G GK+ +
Sbjct: 109 QFSRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVI 168

Query: 125 ARVVY---DLISHEFEASCFLANVREISKKSGLVFLQKQL-----ISQLLNLPDSGVWNV 176
           A       D +      S         + KS        L        LLN P       
Sbjct: 169 ASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228

Query: 177 YDGMNMIRSRLR-HKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL-MAH 234
                MI + L      L V DDV++ + +           +  R  +T+RD  +   A 
Sbjct: 229 VVLKRMICNALIDRPNTLFVFDDVVQEETIR------WAQELRLRCLVTTRDVEISNAAS 282

Query: 235 GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLF 294
              E      L  DE                K  E +    ++ + G P  L +      
Sbjct: 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEK-EEDVLNKTIELSSGNPATLMMFFKSCE 341

Query: 295 GRTIAEWESALQRLERDP-----------ENEILDVLQISFDGLKETEKKIFLDIACFYK 343
            +T  +      +LE                 +   LQ   + L + ++           
Sbjct: 342 PKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPP 401

Query: 344 GKYID 348
           G  I 
Sbjct: 402 GVDIP 406

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  142 bits (359), Expect = 8e-38
 Identities = 60/333 (18%), Positives = 119/333 (35%), Gaps = 36/333 (10%)

Query: 32  FRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAKSETLKELVGLD 91
             E  + +         V +        ++    I   V+ + C+           V   
Sbjct: 76  LHEGYKDLAALLHDGIPVVS----SSSGKDSVSGITSYVRTVLCEGGVPQRP-VVFVTRK 130

Query: 92  SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVY---DLISHEFEASCFLANVREI 148
             +  ++  ++K   +   + I GM G GK+ LA        L+   F       +V + 
Sbjct: 131 KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190

Query: 149 SKKSGLVFLQKQL--ISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQQ 204
            K   L+ LQ     + Q  +       N+ +  + +R  +  +H + LL++DDV +   
Sbjct: 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV 250

Query: 205 LESLAGKHDWFGIGSRIFITSRDKH--LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSH 262
           L         F    +I +T+RDK     +      V +   L  ++ L +  L      
Sbjct: 251 L-------KAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK 303

Query: 263 KPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERD----------- 311
                  + + S++K   G PL + ++G+ L       WE  L++L+             
Sbjct: 304 ---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY 359

Query: 312 PENEILDVLQISFDGLKETEKKIFLDIACFYKG 344
               + + + IS + L+E  K  + D++   K 
Sbjct: 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKD 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  143 bits (360), Expect = 2e-37
 Identities = 59/357 (16%), Positives = 138/357 (38%), Gaps = 59/357 (16%)

Query: 12  TTVRKQTASFKEAFLKHEEAFRENIE-KVQKWRDSLKEVANISGWELKDRNEPEFIVDIV 70
            T+  +     + F+  EE  R N +  +   +   ++ + ++   ++ R+       + 
Sbjct: 69  WTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 71  KEISCKISAKSETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVY- 129
            + +         L++       L +LR          + + I G+ G GKT +A  V  
Sbjct: 127 AKYNVSRLQPYLKLRQA------LLELR--------PAKNVLIDGVLGSGKTWVALDVCL 172

Query: 130 -DLISHEFEASCFLANVREISKKSGLVFLQKQLISQL----LNLPDSGVWNVYDGMNMIR 184
              +  + +   F  N++  +    ++ + ++L+ Q+     +  D    N+   ++ I+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231

Query: 185 SRLR-------HKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL---LMAH 234
           + LR       ++  LLV+ +V   +   +       F +  +I +T+R K +   L A 
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLSCKILLTTRFKQVTDFLSAA 284

Query: 235 GVDEVYMHEH---LNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS 291
               + +  H   L  DE   L  LK     +P    + L + V+      P  L     
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLL-LKYL-DCRP----QDLPREVLT---TNPRRLS---- 331

Query: 292 FLFGRTIAEWESALQRLERDPENEILDVLQISFDGLKETE-KKIFLDIACFYKGKYI 347
            +   +I +  +     +    +++  +++ S + L+  E +K+F  ++ F    +I
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  115 bits (291), Expect = 6e-31
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKD- 59
           +I PIFY ++P+ VR QT  +K+AF KH    + + + +Q W+D+LK+V ++ GW +   
Sbjct: 125 IILPIFYMVDPSDVRHQTGCYKKAFRKHAN--KFDGQTIQNWKDALKKVGDLKGWHIGKN 182

Query: 60  RNEPEFIVDIVKEISCKISAKS 81
             +      +  +I   IS ++
Sbjct: 183 DKQGAIADKVSADIWSHISKEN 204

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  113 bits (284), Expect = 3e-30
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR 60
            + PIFY +EP  VR QT    E F KH    RE+ EKV KWR +L   A +SG    D 
Sbjct: 97  TVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD- 153

Query: 61  NEPEFIVDIVKEISCKISAKS 81
           ++ + +  I  EIS K +  +
Sbjct: 154 DDSKLVDKIANEISNKKTIYA 174

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  106 bits (266), Expect = 4e-25
 Identities = 51/266 (19%), Positives = 106/266 (39%), Gaps = 31/266 (11%)

Query: 94  LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVV---YDLISHEFEASCFLANVREISK 150
           +  ++  + K   +   + I GM G GK+ LA      + L+   F       ++ +  K
Sbjct: 133 VHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192

Query: 151 KSGLVFLQK--QLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQQLE 206
              L+ LQ     + Q  +       N+ +  + +R  +  +H + LL++DDV +   L+
Sbjct: 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK 252

Query: 207 SLAGKHDWFGIGSRIFITSRDKHLLMAH--GVDEVYMHEHLNYDEALGLFCLKAFKSHKP 264
           +       F    +I +T+RDK +  +       V +   L  ++ L +  L      + 
Sbjct: 253 A-------FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED 305

Query: 265 WKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENE--------- 315
                  + S++K   G PL + ++G+ L       W   L++L+               
Sbjct: 306 L---PAEAHSIIKECKGSPLVVSLIGALLR-DFPNRWAYYLRQLQNKQFKRIRKSSSYDY 361

Query: 316 --ILDVLQISFDGLKETEKKIFLDIA 339
             + + + IS + L+E  K  + D++
Sbjct: 362 EALDEAMSISVEMLREDIKDYYTDLS 387

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 4/46 (8%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 1   MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSL 46
            I PI++ +    V   + +  +    +     ++++++     ++
Sbjct: 108 RILPIWHKVSKDEVASFSPTMADKLAFNTS--TKSVDEIVADLMAI 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	100.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	100.0
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.8
2fna_A	357	Conserved hypothetical protein; structural genomic	99.77
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.77
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.71
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.65
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.64
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.64
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.62
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.54
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.53
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.46
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.39
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.28
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.2
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.15
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.13
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.02
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.02
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.0
3bos_A	242	Putative DNA replication factor; P-loop containing	98.99
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.97
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.94
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.93
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.91
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.89
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.88
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.88
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.87
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.85
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.85
3pvs_A	447	Replication-associated recombination protein A; ma	98.84
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.82
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.81
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.79
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.78
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.77
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.77
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.75
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.71
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.71
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.71
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.7
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.63
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.6
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.56
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.52
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.5
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.5
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.5
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.49
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.48
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.47
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.46
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.46
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.44
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.41
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.39
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.37
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.35
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.34
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.33
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.32
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.31
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.3
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.19
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.14
3co5_A	143	Putative two-component system transcriptional RES	98.1
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.09
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.08
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.03
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.93
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.93
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.92
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.91
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.9
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.9
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.88
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.85
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.85
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.84
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.83
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.8
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.8
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.78
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.75
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.75
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.74
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.73
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.72
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.7
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.69
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.67
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.67
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.66
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.64
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.62
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.59
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.58
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.57
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.57
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.55
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.54
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.51
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.49
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.49
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.48
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.48
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.48
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.46
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.44
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.43
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.43
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.39
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.39
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.39
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.38
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.37
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.36
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.36
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.36
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.35
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.3
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.29
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.28
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.27
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.26
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.2
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.2
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.18
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.17
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	97.17
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.16
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.15
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.14
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.1
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.09
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.07
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.06
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.05
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.05
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.05
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.02
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.01
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.98
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.98
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.96
3io5_A	333	Recombination and repair protein; storage dimer, i	96.95
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.95
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.95
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.94
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.93
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.92
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.91
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.91
2qgz_A	308	Helicase loader, putative primosome component; str	96.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.89
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.89
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.88
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.87
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.87
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.85
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.85
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.85
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.85
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.84
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.83
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.83
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.83
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.83
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.82
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.81
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.8
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.79
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.79
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.79
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.78
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.78
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.77
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.77
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.76
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.76
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	96.76
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.73
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.72
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.72
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.68
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.67
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.67
2og2_A	359	Putative signal recognition particle receptor; nuc	96.67
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.66
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.65
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.65
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.64
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.62
1g6h_A	257	High-affinity branched-chain amino acid transport	96.62
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.61
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.61
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.61
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.6
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.59
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.59
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.59
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.57
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.56
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.55
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.55
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.55
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.54
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.54
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.53
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.53
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.53
1via_A	175	Shikimate kinase; structural genomics, transferase	96.53
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.53
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.53
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.52
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.51
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.51
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.5
3ice_A	422	Transcription termination factor RHO; transcriptio	96.5
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.49
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.49
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.48
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.48
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.48
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.48
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.48
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.47
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.47
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.47
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.46
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.46
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.46
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.45
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.45
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.43
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.43
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.42
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.42
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.41
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.41
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.39
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	96.39
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.37
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.37
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.37
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.34
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.34
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.33
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.31
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.31
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.31
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.31
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.31
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.3
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.28
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.26
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.25
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.25
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.24
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.24
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.24
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.24
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.18
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.16
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.15
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.14
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.12
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.1
2xxa_A	433	Signal recognition particle protein; protein trans	96.1
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.1
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.09
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.04
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.02
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.01
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.0
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.0
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.0
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.99
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.99
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.98
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.97
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.95
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.94
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.94
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.93
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.93
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.93
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.92
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	95.92
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.92
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.88
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.88
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.86
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.85
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.84
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.83
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.82
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.81
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.77
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.76
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.76
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.71
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.7
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.69
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.67
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.66
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.64
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.64
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	95.61
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	95.61
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.61
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.58
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.57
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.57
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.57
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.56
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.54
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.53
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.53
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.49
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.41
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.34
3end_A	307	Light-independent protochlorophyllide reductase ir	95.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.3
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.29
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.29
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.28
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.24
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.22
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.21
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.19
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	95.18
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.16
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	95.14
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.14
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.13
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.12
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.1
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.07
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.05
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.03
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	95.01
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.0
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.99
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.99
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.97
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.92
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.92
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	94.91
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.89
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.86
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.84
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.84
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.83
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.83
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.82
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.82
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.81
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.81
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.81
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.8
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.8
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.78
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.77
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	94.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.74
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.74
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.72
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.72
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.72
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.71
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.71
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.7
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.69
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.69
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.67
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	94.67
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.66
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	94.66
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.63
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.62
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.62
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.62
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.6
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.58
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.58
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	94.53
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.53
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.53
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	94.5
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.5
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.49
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.47
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.46
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.45
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.41
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.4
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.4
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.4
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.4
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.39
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.38
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.35
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.34
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.34
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	94.33
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.3
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	94.3
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.3
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.3
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.29
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.29
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.28
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.27
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.26
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.26
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	94.26
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.25
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.25
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.25
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.24
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	94.23
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.21
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.2
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.19
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.19
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.16
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.16
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.14
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.14
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.11
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.11
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.11
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.1
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.07
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.07
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.04
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	94.04
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.02
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.02
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.99
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	93.96
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	93.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.93
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	93.93
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.93
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	93.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	93.91
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	93.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	93.89
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.88

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=5.1e-40  Score=317.34  Aligned_cols=274  Identities=16%  Similarity=0.116  Sum_probs=201.3

Q ss_pred             ccchhhHHHHHHHHhcC-CCCeEEEEEeccCCcchhHHHHHHHH----HHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           88 VGLDSRLEKLRFLINKG-PTDVRMIGICGMGGIGKTTLARVVYD----LISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        88 vGR~~~~~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      +||+.+++.|..+|..+ ..++++|+|+|+||+||||||+.+++    ++..+|+.++|+. ++.... .+...+...++
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il  208 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL  208 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence            49999999999999754 34579999999999999999999997    5788899999984 322111 35677888888


Q ss_pred             HHHhCCCC-CC-----CcchhhhHHHHHHhhCCC-ceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcC
Q 017364          163 SQLLNLPD-SG-----VWNVYDGMNMIRSRLRHK-KVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHG  235 (373)
Q Consensus       163 ~~~~~~~~-~~-----~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~  235 (373)
                      ..+..... ..     ..+...+...+++.+.++ ++||||||+|+..++ .+..     .+||+||||||+..++..++
T Consensus       209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~  282 (549)
T 2a5y_B          209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS  282 (549)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred             HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence            88765421 11     123344578889999996 999999999998865 2222     15999999999999887764


Q ss_pred             -CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHH-hcCCCC
Q 017364          236 -VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQR-LERDPE  313 (373)
Q Consensus       236 -~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~-l~~~~~  313 (373)
                       ....++|++|+.++|++||.+.++.... .+...+.+.+|+++|+|+||||+.+|+.++..... |...+.. +.....
T Consensus       283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~-~~~~l~~~l~~~~~  360 (549)
T 2a5y_B          283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFE-KMAQLNNKLESRGL  360 (549)
T ss_dssp             SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHH-HHHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHH-HHHHhHHHhhcccH
Confidence             3367999999999999999999876432 35777889999999999999999999999777533 3233332 221123


Q ss_pred             chHHHHHHhchhCCchhhHHHHh-----------hhcccCCCCCHHHHHHHHHhC--CCCccc-----------chhhhh
Q 017364          314 NEILDVLQISFDGLKETEKKIFL-----------DIACFYKGKYIDYVTKILNYC--DFDPII-----------GIGGLI  369 (373)
Q Consensus       314 ~~i~~~l~~s~~~L~~~~~~~l~-----------~la~f~~~~~~~~l~~l~~~~--~~~~~~-----------~l~~L~  369 (373)
                      .++..++..||+.||++.+.||.           +||+||++++++  +.+|.++  |+....           .++.|+
T Consensus       361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~  438 (549)
T 2a5y_B          361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS  438 (549)
T ss_dssp             STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred             HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence            33444555555555555555555           999999999877  7899998  665433           488999


Q ss_pred             ccCC
Q 017364          370 ENLY  373 (373)
Q Consensus       370 ~~~L  373 (373)
                      ++||
T Consensus       439 ~rsL  442 (549)
T 2a5y_B          439 KRGA  442 (549)
T ss_dssp             TBSS
T ss_pred             HcCC
Confidence            9886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.1e-36  Score=317.28  Aligned_cols=281  Identities=19%  Similarity=0.254  Sum_probs=219.6

Q ss_pred             cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH---HhccccceEEEeechhhhcccCHHHH
Q 017364           81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL---ISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      |..+..||||+.++++|...|....+++++|+|+||||+||||||++++++   ....|...+||..+.... .......
T Consensus       120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~  198 (1249)
T 3sfz_A          120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLMK  198 (1249)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHHH
T ss_pred             CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHHHH
Confidence            345577999999999999999866667899999999999999999999976   355577666554443211 1223333


Q ss_pred             HHHHHHHHhCCC---CCCCcchhhhHHHHHHhhCCC--ceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364          158 QKQLISQLLNLP---DSGVWNVYDGMNMIRSRLRHK--KVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM  232 (373)
Q Consensus       158 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~  232 (373)
                      ...+...+....   .....+.......++..+.++  ++||||||+|+...+..+       ++|++||+|||++.++.
T Consensus       199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~  271 (1249)
T 3sfz_A          199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD  271 (1249)
T ss_dssp             HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred             HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence            445555543322   122345666777888888776  999999999998776654       45899999999998874


Q ss_pred             h-cCCCceEeCCC-CCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 017364          233 A-HGVDEVYMHEH-LNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLER  310 (373)
Q Consensus       233 ~-~~~~~~~~l~~-L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~l~~  310 (373)
                      . ......+.+++ |+.+|+++||...++...   +...+.+.+|+++|+|+||||+++|++|+.++ ..|...+..+..
T Consensus       272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~  347 (1249)
T 3sfz_A          272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN  347 (1249)
T ss_dssp             TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred             hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence            3 34556889986 999999999998884432   23345689999999999999999999998655 468888887754


Q ss_pred             CC-----------CchHHHHHHhchhCCchhhHHHHhhhcccCCCC--CHHHHHHHHHhCCCCcccchhhhhccCC
Q 017364          311 DP-----------ENEILDVLQISFDGLKETEKKIFLDIACFYKGK--YIDYVTKILNYCDFDPIIGIGGLIENLY  373 (373)
Q Consensus       311 ~~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~~L  373 (373)
                      ..           ...+..+|..||+.|++++|.||.+||+||+++  +.+.+..+|+.++......++.|+++||
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl  423 (1249)
T 3sfz_A          348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL  423 (1249)
T ss_dssp             CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred             hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence            32           145899999999999999999999999999986  6889999999888888899999999987

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=100.00  E-value=8.2e-35  Score=284.50  Aligned_cols=279  Identities=19%  Similarity=0.257  Sum_probs=207.4

Q ss_pred             cccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH---hcccc-ceEEEeechhhhcccCHHH
Q 017364           81 SETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI---SHEFE-ASCFLANVREISKKSGLVF  156 (373)
Q Consensus        81 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~~~  156 (373)
                      |+.+..||||+.+++.|...|....++.++|+|+|+||+||||||.+++++.   ...|+ .++|+. +..... .....
T Consensus       120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~-~~~~~  197 (591)
T 1z6t_A          120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK-SGLLM  197 (591)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH-HHHHH
T ss_pred             CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch-HHHHH
Confidence            4556789999999999999998655567999999999999999999999753   66786 455554 322111 11122


Q ss_pred             HHHHHHHHHhCC---CCCCCcchhhhHHHHHHhhCC--CceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364          157 LQKQLISQLLNL---PDSGVWNVYDGMNMIRSRLRH--KKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL  231 (373)
Q Consensus       157 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~  231 (373)
                      ....+...+...   ......+.......+...+.+  +++||||||+|+...++.+       ++|++||+|||+..+.
T Consensus       198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~  270 (591)
T 1z6t_A          198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVT  270 (591)
T ss_dssp             HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGG
T ss_pred             HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHH
Confidence            222233333211   112234455666677777755  7899999999998776543       4589999999999876


Q ss_pred             hhcCCCceEeC---CCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHh
Q 017364          232 MAHGVDEVYMH---EHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRL  308 (373)
Q Consensus       232 ~~~~~~~~~~l---~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~l  308 (373)
                      .... ...+.+   ++|+.+|+++||...++...   ....+.+.+|++.|+|+||||.++|++++... ..|...+..+
T Consensus       271 ~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l  345 (591)
T 1z6t_A          271 DSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQL  345 (591)
T ss_dssp             TTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred             HhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence            5543 334444   58999999999999886421   12245689999999999999999999997654 3688888877


Q ss_pred             cCCC-----------CchHHHHHHhchhCCchhhHHHHhhhcccCCCC--CHHHHHHHHHhCCCCcccchhhhhccCC
Q 017364          309 ERDP-----------ENEILDVLQISFDGLKETEKKIFLDIACFYKGK--YIDYVTKILNYCDFDPIIGIGGLIENLY  373 (373)
Q Consensus       309 ~~~~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~~~~l~~L~~~~L  373 (373)
                      ....           ..++..++..||+.||++.|.||.++|+||++.  +.+.+..+|+.++..+...++.|+++||
T Consensus       346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L  423 (591)
T 1z6t_A          346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL  423 (591)
T ss_dssp             HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred             HHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence            5432           247899999999999999999999999999864  6789999998776667788999999986

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=100.00  E-value=1.6e-34  Score=284.92  Aligned_cols=261  Identities=17%  Similarity=0.136  Sum_probs=193.6

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH--HHhccccc-eEEEeechhhhcccCHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD--LISHEFEA-SCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      +..|||+.+++.|..+|... ++.++|+|+||||+||||||+.+++  ++..+|+. ++|+. ++   .......+...+
T Consensus       128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs---~~~d~~~IL~~L  202 (1221)
T 1vt4_I          128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEML  202 (1221)
T ss_dssp             CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CC---CSSSHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eC---CCCCHHHHHHHH
Confidence            34599999999999999753 2368999999999999999999997  46788987 55554 33   233344444444


Q ss_pred             HHH---HhCCCCCC-------CcchhhhHHHHHHhh---CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 017364          162 ISQ---LLNLPDSG-------VWNVYDGMNMIRSRL---RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDK  228 (373)
Q Consensus       162 ~~~---~~~~~~~~-------~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~  228 (373)
                      ...   ........       ..+.......+++.+   .++++||||||+|+.+.|+.+.       +||+||||||+.
T Consensus       203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~  275 (1221)
T 1vt4_I          203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK  275 (1221)
T ss_dssp             HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred             HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence            432   21110000       112333455566655   6899999999999998888763       489999999999


Q ss_pred             hhHhhcCCCceEeCC------CCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCC--CHHH
Q 017364          229 HLLMAHGVDEVYMHE------HLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGR--TIAE  300 (373)
Q Consensus       229 ~~~~~~~~~~~~~l~------~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~--~~~~  300 (373)
                      .++..+.....+.++      +|+.+||++||...... . .    .+...+   .|+|+||||.++|++|+.+  +...
T Consensus       276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~-~-~----eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee  346 (1221)
T 1vt4_I          276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-R-P----QDLPRE---VLTTNPRRLSIIAESIRDGLATWDN  346 (1221)
T ss_dssp             HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCC-C-T----TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred             HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCC-C-H----HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence            877533222245555      89999999999988422 1 1    122233   4999999999999999875  6778


Q ss_pred             HHHHHHHhcCCCCchHHHHHHhchhCCchhh-HHHHhhhcccCCCCC--HHHHHHHHHhCCC-CcccchhhhhccCC
Q 017364          301 WESALQRLERDPENEILDVLQISFDGLKETE-KKIFLDIACFYKGKY--IDYVTKILNYCDF-DPIIGIGGLIENLY  373 (373)
Q Consensus       301 ~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-~~~l~~la~f~~~~~--~~~l~~l~~~~~~-~~~~~l~~L~~~~L  373 (373)
                      |...       ....+..+|..||+.||+++ |.||++||+||++++  .+.+..+|.+++. .+...++.|+++||
T Consensus       347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSL  416 (1221)
T 1vt4_I          347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL  416 (1221)
T ss_dssp             HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSS
T ss_pred             HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Confidence            8652       35789999999999999999 999999999999764  6789999998863 46678999999987

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.80  E-value=3.9e-18  Score=155.38  Aligned_cols=270  Identities=14%  Similarity=0.103  Sum_probs=158.7

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhh---cccCHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREIS---KKSGLVFLQ  158 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~~~~~  158 (373)
                      ..+..|+||+.+++.+...+..+    +.+.|+|++|+|||||++.+++..    + .+|+. +....   .......+.
T Consensus         9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~~~~~   78 (350)
T 2qen_A            9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITREELI   78 (350)
T ss_dssp             CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCHHHHH
T ss_pred             CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCHHHHH
Confidence            45578999999999999999865    789999999999999999998865    1 44443 32211   011233333


Q ss_pred             HHHHHHHhC----------------CC-CCCCcchhhhHHHHHHhhCC-CceEEEecccccHH---------HHHHHhcC
Q 017364          159 KQLISQLLN----------------LP-DSGVWNVYDGMNMIRSRLRH-KKVLLVIDDVIELQ---------QLESLAGK  211 (373)
Q Consensus       159 ~~~~~~~~~----------------~~-~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~---------~l~~l~~~  211 (373)
                      ..+...+..                .. .....+.......+.+.... ++++|||||++...         .+..+...
T Consensus        79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~  158 (350)
T 2qen_A           79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA  158 (350)
T ss_dssp             HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence            333322111                00 00012334444445444432 48999999997532         12222111


Q ss_pred             CCCCCCCcEEEEEeCChhhHhhc------------CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 017364          212 HDWFGIGSRIFITSRDKHLLMAH------------GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA  279 (373)
Q Consensus       212 ~~~~~~g~~iliTtR~~~~~~~~------------~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  279 (373)
                      ... .++.++|+|++........            .....+.+.||+.+|+.+++..........  ...+.+..+++.|
T Consensus       159 ~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~t  235 (350)
T 2qen_A          159 YDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELL  235 (350)
T ss_dssp             HHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHH
T ss_pred             HHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHh
Confidence            110 1367899998876432211            112478999999999999997754221111  1235688999999


Q ss_pred             CCCchHHHHHHHHhcC-CCHHHHHHHHHHhcCCCCchHHHHHHhchhCC---chhhHHHHhhhcccCCCCCHHHHHHHHH
Q 017364          280 GGLPLALKVLGSFLFG-RTIAEWESALQRLERDPENEILDVLQISFDGL---KETEKKIFLDIACFYKGKYIDYVTKILN  355 (373)
Q Consensus       280 ~g~Plal~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~~l~~  355 (373)
                      +|+|+++..++..+.. .+...+..   .+    ...+...+...+..+   ++..+.++..+|+  ...+...+...+.
T Consensus       236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~  306 (350)
T 2qen_A          236 DGIPGWLVVFGVEYLRNGDFGRAMK---RT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLA  306 (350)
T ss_dssp             TTCHHHHHHHHHHHHHHCCHHHHHH---HH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccccHhHHHH---HH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            9999999999876432 23222211   11    111222233333344   7899999999998  3456777776653


Q ss_pred             hC--CCC---cccchhhhhccCC
Q 017364          356 YC--DFD---PIIGIGGLIENLY  373 (373)
Q Consensus       356 ~~--~~~---~~~~l~~L~~~~L  373 (373)
                      ..  +..   ....++.|++.+|
T Consensus       307 ~~~~~~~~~~~~~~l~~L~~~gl  329 (350)
T 2qen_A          307 VKGTKIPEPRLYALLENLKKMNW  329 (350)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTS
T ss_pred             HHhCCCCHHHHHHHHHHHHhCCC
Confidence            32  222   2345667766553

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.77  E-value=1.1e-17  Score=152.75  Aligned_cols=265  Identities=13%  Similarity=0.153  Sum_probs=152.5

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhh--cccCHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREIS--KKSGLVFLQK  159 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~~  159 (373)
                      ..+..|+||+.+++.+.. +..     +++.|+|++|+|||+|++.+++.....   .+|+. +....  ..........
T Consensus        10 ~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~   79 (357)
T 2fna_A           10 DNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFLL   79 (357)
T ss_dssp             CSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHHH
T ss_pred             CCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHHH
Confidence            455789999999999999 764     589999999999999999999876532   34543 22210  0011122222


Q ss_pred             HHHHHH-------------hCCC------CC---------CCcchhhhHHHHHHhhCCCceEEEecccccHH-----H--
Q 017364          160 QLISQL-------------LNLP------DS---------GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----Q--  204 (373)
Q Consensus       160 ~~~~~~-------------~~~~------~~---------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~--  204 (373)
                      .+...+             +...      ..         ...........+.+... ++++|||||++...     .  
T Consensus        80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~  158 (357)
T 2fna_A           80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL  158 (357)
T ss_dssp             HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred             HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence            221111             1100      00         01123333333433222 48999999996532     1  


Q ss_pred             --HHHHhcCCCCCCCCcEEEEEeCChhhHhh----------c--CCCceEeCCCCCHhHHHHHHHHhhcC-CCCCCchHH
Q 017364          205 --LESLAGKHDWFGIGSRIFITSRDKHLLMA----------H--GVDEVYMHEHLNYDEALGLFCLKAFK-SHKPWKGYE  269 (373)
Q Consensus       205 --l~~l~~~~~~~~~g~~iliTtR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~l~~~~~~~-~~~~~~~~~  269 (373)
                        +..+....    .+.++|+|++.......          .  .....+.+.+|+.+|+.+++...... ..... .  
T Consensus       159 ~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~--  231 (357)
T 2fna_A          159 PALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D--  231 (357)
T ss_dssp             HHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C--
T ss_pred             HHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c--
Confidence              22232221    36789999998653221          1  11257899999999999999875421 11222 1  


Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhcC-CCHHHHHHH-HHHhcCCCCchHHHHHHhch---hCCchhhHHHHhhhcccCCC
Q 017364          270 QLSKSVVKYAGGLPLALKVLGSFLFG-RTIAEWESA-LQRLERDPENEILDVLQISF---DGLKETEKKIFLDIACFYKG  344 (373)
Q Consensus       270 ~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~-l~~l~~~~~~~i~~~l~~s~---~~L~~~~~~~l~~la~f~~~  344 (373)
                        ...+++.|+|+|+++..++..+.. .+...|... .+..    ...+...+...+   ..|++..+.++..+|+ . .
T Consensus       232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~  303 (357)
T 2fna_A          232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G  303 (357)
T ss_dssp             --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B
T ss_pred             --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C
Confidence              278999999999999999877632 333333221 1110    001111122111   1688999999999998 3 3


Q ss_pred             CCHHHHHHHHH-hCC--C---CcccchhhhhccCC
Q 017364          345 KYIDYVTKILN-YCD--F---DPIIGIGGLIENLY  373 (373)
Q Consensus       345 ~~~~~l~~l~~-~~~--~---~~~~~l~~L~~~~L  373 (373)
                       +...+...+. ..|  .   .....++.|++++|
T Consensus       304 -~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gl  337 (357)
T 2fna_A          304 -KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSW  337 (357)
T ss_dssp             -CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTS
T ss_pred             -CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence             6677665432 123  2   22455777766553

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.77  E-value=5.9e-17  Score=151.01  Aligned_cols=250  Identities=16%  Similarity=0.057  Sum_probs=150.6

Q ss_pred             cccCcccchhhHHHHHHHH-hcC--C--CCeEEEEE--eccCCcchhHHHHHHHHHHhccc-----cc-eEEEeechhhh
Q 017364           83 TLKELVGLDSRLEKLRFLI-NKG--P--TDVRMIGI--CGMGGIGKTTLARVVYDLISHEF-----EA-SCFLANVREIS  149 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l-~~~--~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~~  149 (373)
                      .+..|+||+.+++.+...+ ...  .  ...+.+.|  +|++|+|||||++.+++.....+     .. .+|+. +   .
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---~   95 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-A---F   95 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-G---G
T ss_pred             CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-C---C
Confidence            3468999999999999988 421  1  23467777  99999999999999998876531     22 33432 2   2


Q ss_pred             cccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhC--CCceEEEecccccH--------HHHHHHhcCC---CCCC
Q 017364          150 KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLR--HKKVLLVIDDVIEL--------QQLESLAGKH---DWFG  216 (373)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~--------~~l~~l~~~~---~~~~  216 (373)
                      .......+...++..+.........+.......+...+.  +++++|||||++..        ..+..+...+   +..+
T Consensus        96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~  175 (412)
T 1w5s_A           96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD  175 (412)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred             CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence            234555666777766533222122233444555555553  67899999999753        3333332221   1112


Q ss_pred             --CCcEEEEEeCChhhHhh---------cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC-----
Q 017364          217 --IGSRIFITSRDKHLLMA---------HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG-----  280 (373)
Q Consensus       217 --~g~~iliTtR~~~~~~~---------~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-----  280 (373)
                        .+..+|+||+...+...         ......+.+++|+.+++.++|...+...........+....+++.|+     
T Consensus       176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  255 (412)
T 1w5s_A          176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG  255 (412)
T ss_dssp             SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred             CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence              34557878875543211         11223499999999999999976542111111122467889999999     


Q ss_pred             -CCchHHHHHHHHhc------C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364          281 -GLPLALKVLGSFLF------G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY  342 (373)
Q Consensus       281 -g~Plal~~~~~~l~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~  342 (373)
                       |+|..+..++....      +   -+...+..++.....      ...+..+++.||+..+.++..++.+.
T Consensus       256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~  321 (412)
T 1w5s_A          256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEAT  321 (412)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence             99987666654321      1   123334444433210      23455667899999999999999754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.71  E-value=3.9e-15  Score=137.36  Aligned_cols=243  Identities=13%  Similarity=0.070  Sum_probs=154.9

Q ss_pred             ccCcccchhhHHHHHHHHhc--CCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------c-cceEEEeechhhhccc-C
Q 017364           84 LKELVGLDSRLEKLRFLINK--GPTDVRMIGICGMGGIGKTTLARVVYDLISHE------F-EASCFLANVREISKKS-G  153 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f-~~~~~~~~~~~~~~~~-~  153 (373)
                      +..++||+.+++.+...+..  .....+.+.|+|++|+|||+||+.+++.+...      + ...+.+.++.   ... .
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~   95 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR---EVGGT   95 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH---HHCSC
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc---cCCCC
Confidence            37899999999999988764  22335789999999999999999999987543      1 2222222322   223 4


Q ss_pred             HHHHHHHHHHHHhCCCCC-CCcchhhhHHHHHHhhCCCceEEEecccccHH------H-HHHHhcCCCCCCCCcEEEEEe
Q 017364          154 LVFLQKQLISQLLNLPDS-GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ------Q-LESLAGKHDWFGIGSRIFITS  225 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~-l~~l~~~~~~~~~g~~iliTt  225 (373)
                      ...+...++..+.+.... ...+.......+...+...+.+|+|||++...      . +..+....    .+..+|+||
T Consensus        96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t  171 (384)
T 2qby_B           96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS  171 (384)
T ss_dssp             HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence            555666666666443222 12234455666777777666699999997543      2 33444332    477888898


Q ss_pred             CChhhHh----h--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCchHHH-HHHHHh--
Q 017364          226 RDKHLLM----A--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG---GLPLALK-VLGSFL--  293 (373)
Q Consensus       226 R~~~~~~----~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~-~~~~~l--  293 (373)
                      +......    .  ......+.+++++.++..+++...+...........+..+.+++.++   |+|..+. .+-...  
T Consensus       172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~  251 (384)
T 2qby_B          172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL  251 (384)
T ss_dssp             SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            8753211    0  11223899999999999999988753111011112345777888888   9988443 332221  


Q ss_pred             c----CCCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcc
Q 017364          294 F----GRTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIAC  340 (373)
Q Consensus       294 ~----~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~  340 (373)
                      .    .-+.+.+..++....       ...+..+++.|++.++.++..++.
T Consensus       252 a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~  295 (384)
T 2qby_B          252 ASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIE  295 (384)
T ss_dssp             TTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred             hcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHH
Confidence            1    134566666666542       245667788999999998888887

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.65  E-value=5.1e-15  Score=136.51  Aligned_cols=248  Identities=15%  Similarity=0.103  Sum_probs=148.1

Q ss_pred             cccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccc--c-ceEEEeechhhhcccCHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEF--E-ASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~-~~~~~~~~~~~~~~~~~~~~  157 (373)
                      .+..|+||+.+++.+...+...  ....+.+.|+|++|+|||||++.+++.+...+  . ..+|+. +.   .......+
T Consensus        18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~---~~~~~~~~   93 (386)
T 2qby_A           18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TR---QIDTPYRV   93 (386)
T ss_dssp             CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HH---HHCSHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CC---CCCCHHHH
Confidence            3478999999999999988742  23357899999999999999999999876653  2 233332 22   12233334


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhC--CCceEEEecccccHH------HHHHHhcCCCC-CCCCcEEEEEeCCh
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLR--HKKVLLVIDDVIELQ------QLESLAGKHDW-FGIGSRIFITSRDK  228 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~l~~l~~~~~~-~~~g~~iliTtR~~  228 (373)
                      ...++..+.........+.......+...+.  +++.+|+||+++...      .+..+...... ...+..+|+||++.
T Consensus        94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~  173 (386)
T 2qby_A           94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV  173 (386)
T ss_dssp             HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence            4444433311111111223444445555543  458999999986532      33333222210 13356678888866


Q ss_pred             hhHhhc------CC-CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCchHHHHHHHHhc----
Q 017364          229 HLLMAH------GV-DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG---GLPLALKVLGSFLF----  294 (373)
Q Consensus       229 ~~~~~~------~~-~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~----  294 (373)
                      ......      .. ...+.+++++.++..+++...+...........+..+.+++.++   |+|..+..+.....    
T Consensus       174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~  253 (386)
T 2qby_A          174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE  253 (386)
T ss_dssp             GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            432211      11 24799999999999999987642111111123456777888887   99995544443321    


Q ss_pred             --C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhccc
Q 017364          295 --G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACF  341 (373)
Q Consensus       295 --~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f  341 (373)
                        +   -+...+..++....       ...+...++.+++..+.++..++.+
T Consensus       254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~  298 (386)
T 2qby_A          254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSI  298 (386)
T ss_dssp             HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHH
Confidence              1   23445555554431       2456677888999999988888854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.64  E-value=1.8e-14  Score=133.06  Aligned_cols=248  Identities=14%  Similarity=0.083  Sum_probs=151.3

Q ss_pred             ccCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      ++.++||+.+++.+...+..    .....+.+.|+|++|+|||||++.+++...... ...+++. +   ........+.
T Consensus        16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~---~~~~~~~~~~   91 (389)
T 1fnn_A           16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-G---FIYRNFTAII   91 (389)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-T---TTCCSHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-C---ccCCCHHHHH
Confidence            36799999999999988875    222234899999999999999999999876542 2333332 2   2233445556


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEeccccc--HHHHHHHhcCCCCCC----CCcEEEEEeCChhh
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIE--LQQLESLAGKHDWFG----IGSRIFITSRDKHL  230 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~----~g~~iliTtR~~~~  230 (373)
                      ..++..+.........+.......+...+  .+++.+|+||+++.  ...+..+........    .+..+|++|++...
T Consensus        92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~  171 (389)
T 1fnn_A           92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  171 (389)
T ss_dssp             HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence            66665543222212223444444444444  35688999999975  344444444332111    36678888887643


Q ss_pred             HhhcC-------CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh---------CCCchHHHHHHHHhc
Q 017364          231 LMAHG-------VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA---------GGLPLALKVLGSFLF  294 (373)
Q Consensus       231 ~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~  294 (373)
                      .....       ....+.+++++.++..+++...+...........+..+.+++.+         +|+|..+..+.....
T Consensus       172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~  251 (389)
T 1fnn_A          172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA  251 (389)
T ss_dssp             HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred             HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence            22211       12369999999999999998775320001122356788899999         799876665554321


Q ss_pred             ------C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364          295 ------G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY  342 (373)
Q Consensus       295 ------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~  342 (373)
                            +   -+......++......       .+...++.|+++.+.++..++.+.
T Consensus       252 ~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~  301 (389)
T 1fnn_A          252 YAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSL  301 (389)
T ss_dssp             HHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHH
Confidence                  1   1233444444433211       123336678888998888888654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.64  E-value=1.8e-14  Score=132.85  Aligned_cols=249  Identities=13%  Similarity=0.050  Sum_probs=150.9

Q ss_pred             cccCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhccc-----cc-eEEEeechhhhcccCH
Q 017364           83 TLKELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEF-----EA-SCFLANVREISKKSGL  154 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~~~~~~~  154 (373)
                      .+..++||+.+++.+..++...  ....+.+.|+|++|+|||||++.+++......     .. .+++ ++   ......
T Consensus        17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i-~~---~~~~~~   92 (387)
T 2v1u_A           17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV-NA---RHRETP   92 (387)
T ss_dssp             CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE-ET---TTSCSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE-EC---CcCCCH
Confidence            3478999999999999988542  23457899999999999999999998875431     22 2333 22   223445


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH-------HHHHHhcCCCCC--CCCcEEEE
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-------QLESLAGKHDWF--GIGSRIFI  223 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~--~~g~~ili  223 (373)
                      ..+...++..+.........+.......+...+  .+++.+|+||+++...       .+..+.......  ..+..+|+
T Consensus        93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~  172 (387)
T 2v1u_A           93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG  172 (387)
T ss_dssp             HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence            556666666653322222233445555566555  3558899999997543       233333222111  23556777


Q ss_pred             EeCChhhHh------hcCCC-ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhC---CCchHHHHHHHHh
Q 017364          224 TSRDKHLLM------AHGVD-EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAG---GLPLALKVLGSFL  293 (373)
Q Consensus       224 TtR~~~~~~------~~~~~-~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l  293 (373)
                      ||+......      ..... ..+.+++++.++..+++...+...........+..+.+++.++   |+|..+..+....
T Consensus       173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a  252 (387)
T 2v1u_A          173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA  252 (387)
T ss_dssp             ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            877652210      01122 4789999999999999987753100011112345677888888   9995444333222


Q ss_pred             c------C---CCHHHHHHHHHHhcCCCCchHHHHHHhchhCCchhhHHHHhhhcccC
Q 017364          294 F------G---RTIAEWESALQRLERDPENEILDVLQISFDGLKETEKKIFLDIACFY  342 (373)
Q Consensus       294 ~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~  342 (373)
                      .      +   -+.+.+..++....       ...+..++..|++.++.++..++.+.
T Consensus       253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~  303 (387)
T 2v1u_A          253 GEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLE  303 (387)
T ss_dssp             HHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHh
Confidence            1      1   24555666655431       23566678899999998888887443

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.62  E-value=2.2e-16  Score=126.14  Aligned_cols=78  Identities=38%  Similarity=0.598  Sum_probs=69.6

Q ss_pred             CEEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCCCCChhHHHhhhhhcccccccCc
Q 017364            1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDRNEPEFIVDIVKEISCKISAK   80 (373)
Q Consensus         1 ~v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (373)
                      +|+||||+|+|++||.|+|+|+++|.+++.+  .+.+++++|++||+++++++|+.+ ..+|.+++++|++.|..++.++
T Consensus        97 ~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~-~~~e~~~i~~Iv~~v~~~l~~~  173 (176)
T 3jrn_A           97 TVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS-GDDDSKLVDKIANEISNKKTIY  173 (176)
T ss_dssp             EEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC-CSCHHHHHHHHHHHHHTTCC--
T ss_pred             EEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec-CCCHHHHHHHHHHHHHHHhcCC
Confidence            4899999999999999999999999999887  556789999999999999999988 4679999999999999988876


Q ss_pred             c
Q 017364           81 S   81 (373)
Q Consensus        81 ~   81 (373)
                      |
T Consensus       174 ~  174 (176)
T 3jrn_A          174 A  174 (176)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.54  E-value=3.2e-13  Score=116.07  Aligned_cols=197  Identities=14%  Similarity=0.097  Sum_probs=117.2

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      ...++||+.+++.+...+..+. ..+.+.|+|++|+|||||++.+++.+...+.......  .     .. .. ...+..
T Consensus        22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--~-----~~-~~-~~~~~~   91 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--G-----VC-DN-CREIEQ   91 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--S-----CS-HH-HHHHHT
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--c-----cc-HH-HHHHhc
Confidence            3569999999999999998653 2357899999999999999999988754332111000  0     00 00 000000


Q ss_pred             H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhhHh
Q 017364          164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHLLM  232 (373)
Q Consensus       164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~  232 (373)
                      .    +........... .....+.+.+     .+++.+||+||++.  ...+..+...+.....+..+|+||+......
T Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~  170 (250)
T 1njg_A           92 GRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  170 (250)
T ss_dssp             TCCSSEEEEETTCGGGH-HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             cCCcceEEecCcccccH-HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence            0    000000000001 1111122221     34678999999964  3444444443332244678888887653211


Q ss_pred             h--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          233 A--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       233 ~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      .  ......+.+++++.++..+++...+......  ...+....|++.|+|+|..+..+...+
T Consensus       171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            1  1224689999999999999998776432222  224568899999999999998887654

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.53  E-value=2.1e-15  Score=122.47  Aligned_cols=76  Identities=36%  Similarity=0.768  Sum_probs=67.7

Q ss_pred             CEEeeeecccccccccccchHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHhhcCCcCCCC-ChhHHHhhhhhccccccc
Q 017364            1 MIFPIFYDLEPTTVRKQTASFKEAFLKHEEAFRENIEKVQKWRDSLKEVANISGWELKDR-NEPEFIVDIVKEISCKIS   78 (373)
Q Consensus         1 ~v~p~~~~v~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~   78 (373)
                      +|+||||+|+|++||.|+|+|+++|.++++++..  +++++|++||+++|+++||.+.+. .+.+++++|+..|..+++
T Consensus       125 ~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~  201 (204)
T 3ozi_A          125 IILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS  201 (204)
T ss_dssp             EECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhc
Confidence            4899999999999999999999999999887643  579999999999999999998874 577899999998887765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.46  E-value=2.7e-12  Score=108.66  Aligned_cols=186  Identities=14%  Similarity=0.110  Sum_probs=113.0

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ...++||+..++.+..++..+..  +.+.|+|++|+|||+|++.+++.+.... ...+...+.   ......... ...+
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~   89 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVV-RHKI   89 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHH-HHHH
T ss_pred             HHHHcCcHHHHHHHHHHHhCCCC--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHH-HHHH
Confidence            35699999999999999986532  3489999999999999999998864432 222222221   111111111 1111


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhHh-h-cCCCc
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLLM-A-HGVDE  238 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~~-~-~~~~~  238 (373)
                      ........               ....++.+|++||++..  .....+...+.....+..+|+||+...... . .....
T Consensus        90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~  154 (226)
T 2chg_A           90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA  154 (226)
T ss_dssp             HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence            11111100               01356789999999753  333333322222234677888887653211 1 11234


Q ss_pred             eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364          239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF  292 (373)
Q Consensus       239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  292 (373)
                      .+.+++++.++..+++...+......  ...+....+++.++|+|..+..+...
T Consensus       155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~  206 (226)
T 2chg_A          155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG  206 (226)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            78999999999999998776322211  22456788999999999976555443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.39  E-value=1e-11  Score=111.53  Aligned_cols=184  Identities=15%  Similarity=0.205  Sum_probs=109.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ...++|++..++.+..++..+..  +.+.|+|++|+|||++|+.+++.+... +...+...+.   ...... .....++
T Consensus        20 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~---~~~~~~-~~i~~~~   93 (323)
T 1sxj_B           20 LSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRGI-DVVRNQI   93 (323)
T ss_dssp             GGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCSH-HHHHTHH
T ss_pred             HHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC---ccccCh-HHHHHHH
Confidence            35699999999999999986532  338999999999999999999986432 2221221111   111111 1111222


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cCCC
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HGVD  237 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~~~  237 (373)
                      ..+....               ..+ .+++.++|+||++..  .....+...+.....++.+|++|++..-. .. ....
T Consensus        94 ~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~  158 (323)
T 1sxj_B           94 KHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC  158 (323)
T ss_dssp             HHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             HHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence            2111000               011 345789999999752  23333322222223467788888765321 11 1233


Q ss_pred             ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHHH
Q 017364          238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVLG  290 (373)
Q Consensus       238 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~  290 (373)
                      ..+.+.+++.++..+++...+......  ...+....+++.++|+|.. +..+.
T Consensus       159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~  210 (323)
T 1sxj_B          159 AILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ  210 (323)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             eEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            589999999999999998765321111  2245678899999999955 44443

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.28  E-value=1.1e-10  Score=104.90  Aligned_cols=187  Identities=13%  Similarity=0.140  Sum_probs=111.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ...++|++..++.+..++..+..  +.+.|+|++|+||||+|+.+++.+.... ...+...+.....   .. ......+
T Consensus        24 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~   97 (327)
T 1iqp_A           24 LDDIVGQEHIVKRLKHYVKTGSM--PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER---GI-NVIREKV   97 (327)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHTCC--CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH---HH-HTTHHHH
T ss_pred             HHHhhCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC---ch-HHHHHHH
Confidence            45699999999999999987632  4599999999999999999999864332 1111111111100   00 0001111


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cCCCc
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HGVDE  238 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~~~~  238 (373)
                      .......               ....+++.++++||++..  .....+...+.....++++|+||...... .. .....
T Consensus        98 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~  162 (327)
T 1iqp_A           98 KEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA  162 (327)
T ss_dssp             HHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred             HHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence            1100000               011256789999999753  33333333222223467888888765321 11 01224


Q ss_pred             eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      .+.+.+++.++...++...+......  ...+....+++.++|+|..+..+...+
T Consensus       163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~~~  215 (327)
T 1iqp_A          163 IFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQAA  215 (327)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             EEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            78999999999999998776432211  234668889999999999766554443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.20  E-value=7.4e-10  Score=99.09  Aligned_cols=182  Identities=13%  Similarity=0.102  Sum_probs=112.9

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      ...++|++..++.+...+..+..  +.+.|+|++|+|||++|+.+++.+... +...+...+......            
T Consensus        16 ~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------------   81 (319)
T 2chq_A           16 LDEVVGQDEVIQRLKGYVERKNI--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------------   81 (319)
T ss_dssp             GGGSCSCHHHHHHHHTTTTTTCC--CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------------
T ss_pred             HHHHhCCHHHHHHHHHHHhCCCC--CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------------
Confidence            35699999999999998876532  348999999999999999999886322 221122112111000            


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHh--h-CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhh-cC
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSR--L-RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHL-LMA-HG  235 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~-~~  235 (373)
                                ..........+...  + .+++.++|+|+++..  .....+...+.....++.+|++|....- ... ..
T Consensus        82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s  151 (319)
T 2chq_A           82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS  151 (319)
T ss_dssp             ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred             ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence                      00111111111111  1 255789999999753  3445555555444457778888766531 111 12


Q ss_pred             CCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          236 VDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       236 ~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      ....+.+.+++.++...++...+......  ...+....+++.++|++..+.....
T Consensus       152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~  205 (319)
T 2chq_A          152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ  205 (319)
T ss_dssp             TCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             hCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            33589999999999999998776432222  2345678899999999987655443

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.15  E-value=7.9e-10  Score=101.25  Aligned_cols=195  Identities=14%  Similarity=0.104  Sum_probs=111.5

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      ...++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+........  ..+...       .....+..
T Consensus        15 ~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~--~~~~~~-------~~~~~~~~   84 (373)
T 1jr3_A           15 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--TPCGVC-------DNCREIEQ   84 (373)
T ss_dssp             TTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS--SCCSSS-------HHHHHHHT
T ss_pred             hhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC--CCCccc-------HHHHHHhc
Confidence            3569999999999999997652 2357889999999999999999987753321100  000000       00000000


Q ss_pred             H----HhCCCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChhh-H
Q 017364          164 Q----LLNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKHL-L  231 (373)
Q Consensus       164 ~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~~-~  231 (373)
                      .    +............. ...+...+     .+++.++|+||++.  ......+...+.....+..+|++|.+..- .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  163 (373)
T 1jr3_A           85 GRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (373)
T ss_dssp             SCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred             cCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence            0    00000000001111 22222222     34578999999964  33344443333222346677777765431 1


Q ss_pred             hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          232 MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       232 ~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      .. ......+.+.+++.++..+++...+......  ...+....+++.++|+|..+..+..
T Consensus       164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~  222 (373)
T 1jr3_A          164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD  222 (373)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred             HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence            11 1233688999999999999998765321111  2245678899999999998876653

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.13  E-value=2.1e-09  Score=96.50  Aligned_cols=179  Identities=18%  Similarity=0.100  Sum_probs=106.5

Q ss_pred             cccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK  159 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  159 (373)
                      ....++|++..++.+...+...   ......+.|+|++|+|||+||+.+++.....|   .++ +....   ....    
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~-~~~~~---~~~~----   78 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVT-SGPAI---EKPG----   78 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEE-CTTTC---CSHH----
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ecccc---CChH----
Confidence            3467999999988888877521   12236689999999999999999998764221   222 21111   1111    


Q ss_pred             HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCC------------------CCCCc
Q 017364          160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDW------------------FGIGS  219 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~------------------~~~g~  219 (373)
                      .+...                  +... ...+.+|+||+++...  ....+...+..                  ..++.
T Consensus        79 ~l~~~------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~  139 (324)
T 1hqc_A           79 DLAAI------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF  139 (324)
T ss_dssp             HHHHH------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred             HHHHH------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence            11111                  1110 1345689999996532  22222211100                  00235


Q ss_pred             EEEEEeCChhhHh-h--cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          220 RIFITSRDKHLLM-A--HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       220 ~iliTtR~~~~~~-~--~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                      .+|.+|....... .  ......+.+++++.++...++...+......  ...+....+++.++|+|..+..+...+
T Consensus       140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~  214 (324)
T 1hqc_A          140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRV  214 (324)
T ss_dssp             EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            5666666432111 1  1123578999999999999998776432222  234668889999999999988777655

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.02  E-value=6.8e-09  Score=85.33  Aligned_cols=49  Identities=18%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...++||+.+++.+...+..+.  .+.+.|+|++|+|||+||+.+++.+..
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3569999999999999987643  366899999999999999999998643

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.02  E-value=5.8e-09  Score=92.24  Aligned_cols=170  Identities=11%  Similarity=0.038  Sum_probs=97.6

Q ss_pred             cCcccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHhcccc------ceEEEeechhhhcccCHHH
Q 017364           85 KELVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLISHEFE------ASCFLANVREISKKSGLVF  156 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~  156 (373)
                      ..+.||++|++.+...|.+.  ...++.+.|+|++|+|||++++.+++.+.....      ..+...++   ....+...
T Consensus        20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc---~~~~t~~~   96 (318)
T 3te6_A           20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA---LELAGMDA   96 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET---TCCC--HH
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec---cccCCHHH
Confidence            34899999999999877642  234578899999999999999999998754321      11111222   22334455


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHh--hCCCceEEEecccccH---HHHHHHhcCCCCCCCCcEEEEEeCChh--
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSR--LRHKKVLLVIDDVIEL---QQLESLAGKHDWFGIGSRIFITSRDKH--  229 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~---~~l~~l~~~~~~~~~g~~iliTtR~~~--  229 (373)
                      ....++.++.+...........+...+...  -.+++++++||+++..   +.+-.+............+|.++...+  
T Consensus        97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~  176 (318)
T 3te6_A           97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI  176 (318)
T ss_dssp             HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred             HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence            666777776554322212222222222221  1456799999998753   333333321000011233444443321  


Q ss_pred             --hH-----hhcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          230 --LL-----MAHGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       230 --~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                        .+     ..+ ....+.++|++.+|..+++..++
T Consensus       177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl  211 (318)
T 3te6_A          177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL  211 (318)
T ss_dssp             HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred             hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence              11     122 12478999999999999998776

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.00  E-value=4.7e-08  Score=85.30  Aligned_cols=169  Identities=14%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             cCcccchhhHHHHHH-------HHhc-CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHH
Q 017364           85 KELVGLDSRLEKLRF-------LINK-GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVF  156 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~-------~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  156 (373)
                      ..++|+...++.+..       .+.. .....+.+.|+|++|+|||+||+.+++.....  .+ .+....... ......
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~~-~i~~~~~~~-g~~~~~  108 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--FI-KICSPDKMI-GFSETA  108 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--EE-EEECGGGCT-TCCHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--EE-EEeCHHHhc-CCchHH
Confidence            457888776665554       3321 23346789999999999999999999875322  11 111111000 000000


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH---------------HHHHHHhcCCCCCCCCcEE
Q 017364          157 LQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL---------------QQLESLAGKHDWFGIGSRI  221 (373)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------------~~l~~l~~~~~~~~~g~~i  221 (373)
                      .                  .......+.......+.+|+||+++..               ..+..+.......+....|
T Consensus       109 ~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i  170 (272)
T 1d2n_A          109 K------------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI  170 (272)
T ss_dssp             H------------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred             H------------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence            0                  001111222333466889999998654               2233333332222334556


Q ss_pred             EEEeCChhhHhhc----CCCceEeCCCCCH-hHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Q 017364          222 FITSRDKHLLMAH----GVDEVYMHEHLNY-DEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL  282 (373)
Q Consensus       222 liTtR~~~~~~~~----~~~~~~~l~~L~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~  282 (373)
                      |.||.........    .....+.+++++. ++...++....   . .   ..+....+++.+.|.
T Consensus       171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~  229 (272)
T 1d2n_A          171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGK  229 (272)
T ss_dssp             EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTS
T ss_pred             EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCC
Confidence            7777776544431    1245788999988 66666655432   1 1   134577888888884

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.00  E-value=3e-08  Score=89.97  Aligned_cols=195  Identities=10%  Similarity=0.092  Sum_probs=109.0

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEeechhhhcccCHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE--FEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ....++|++..++.+...+..+..  +.+.|+|++|+||||+|+.+++.+...  +...+...+..   ....... ..+
T Consensus        35 ~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~~~~-~~~  108 (353)
T 1sxj_D           35 NLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS---DERGISI-VRE  108 (353)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS---SCCCHHH-HTT
T ss_pred             CHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc---cccchHH-HHH
Confidence            345799999999999999886632  338999999999999999999876421  22222221111   1111111 111


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhhc-CC
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHL-LMAH-GV  236 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~~-~~  236 (373)
                      ...............  .   .....-...+.++++|+++..  .....+...+.......++|++|....- .... ..
T Consensus       109 ~~~~~~~~~~~~~~~--~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR  183 (353)
T 1sxj_D          109 KVKNFARLTVSKPSK--H---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ  183 (353)
T ss_dssp             HHHHHHHSCCCCCCT--T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred             HHHHHhhhcccccch--h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence            111111110000000  0   001111245579999998642  2223332222111235667777754421 1110 11


Q ss_pred             CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       237 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ...+.+.+++.++....+...+......  ...+..+.|++.++|+|..+..+.
T Consensus       184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l  235 (353)
T 1sxj_D          184 CSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL  235 (353)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             CceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence            2478999999999999998776432221  224678899999999998755544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.99  E-value=1.5e-09  Score=92.80  Aligned_cols=173  Identities=14%  Similarity=0.051  Sum_probs=101.4

Q ss_pred             cCcccch---hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           85 KELVGLD---SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        85 ~~~vGR~---~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      ..|+|+.   ..++.+.......  ..+.+.|+|++|+||||||+.+++..........++. ........         
T Consensus        28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~---------   95 (242)
T 3bos_A           28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASIS---------   95 (242)
T ss_dssp             TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSC---------
T ss_pred             hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHH---------
Confidence            5677743   4566676666543  2378999999999999999999998765544444443 22211100         


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------HHHHHhcCCCCCCCC-cEEEEEeCChh----
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------QLESLAGKHDWFGIG-SRIFITSRDKH----  229 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~l~~l~~~~~~~~~g-~~iliTtR~~~----  229 (373)
                                     ...   + .. ..++.+|++||++...       .+..++....  ..+ .++|+||+...    
T Consensus        96 ---------------~~~---~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~--~~~~~~ii~~~~~~~~~~~  153 (242)
T 3bos_A           96 ---------------TAL---L-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA--EQKRGSLIVSASASPMEAG  153 (242)
T ss_dssp             ---------------GGG---G-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH--HHCSCEEEEEESSCTTTTT
T ss_pred             ---------------HHH---H-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCCeEEEEcCCCHHHHH
Confidence                           000   0 01 1345689999986431       1222221111  112 24777776432    


Q ss_pred             -----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh
Q 017364          230 -----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL  293 (373)
Q Consensus       230 -----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  293 (373)
                           +.........+.+++++.++..+++...+......  ...+..+.+++.++|++..+..+...+
T Consensus       154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~~  220 (242)
T 3bos_A          154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLDRL  220 (242)
T ss_dssp             CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence                 11111122678999999999999998776322211  224567889999999988776665443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.97  E-value=3e-09  Score=93.58  Aligned_cols=183  Identities=17%  Similarity=0.173  Sum_probs=104.4

Q ss_pred             cccCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcc
Q 017364           83 TLKELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKK  151 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~  151 (373)
                      ....++|.+..++.+...+..           +....+.+.|+|++|+|||+||+.+++.....+    ...........
T Consensus        15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~~~   90 (285)
T 3h4m_A           15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELVKK   90 (285)
T ss_dssp             CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGCCC
T ss_pred             CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHHHh
Confidence            345799999999998877642           112346799999999999999999998764322    22122111111


Q ss_pred             cCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--
Q 017364          152 SGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--  213 (373)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--  213 (373)
                      .. ..                  ........+.......+.+|+||+++..                ..+..++....  
T Consensus        91 ~~-~~------------------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  151 (285)
T 3h4m_A           91 FI-GE------------------GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF  151 (285)
T ss_dssp             ST-TH------------------HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred             cc-ch------------------HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence            00 00                  0011111222233456789999999653                12333332211  


Q ss_pred             CCCCCcEEEEEeCChhhHh-----hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHH
Q 017364          214 WFGIGSRIFITSRDKHLLM-----AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALK  287 (373)
Q Consensus       214 ~~~~g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~  287 (373)
                      ....+..||.||.......     .......+.+++++.++..+++...........   ......++..+.| .|-.|.
T Consensus       152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~  228 (285)
T 3h4m_A          152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELK  228 (285)
T ss_dssp             CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHH
T ss_pred             CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHH
Confidence            1123566777777553221     112334789999999999999988764322111   1125667777777 455666


Q ss_pred             HHHH
Q 017364          288 VLGS  291 (373)
Q Consensus       288 ~~~~  291 (373)
                      .+..
T Consensus       229 ~l~~  232 (285)
T 3h4m_A          229 AICT  232 (285)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.94  E-value=8.6e-08  Score=87.05  Aligned_cols=203  Identities=11%  Similarity=0.032  Sum_probs=113.0

Q ss_pred             hhHHHhhhhhcccccccCccccccCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           62 EPEFIVDIVKEISCKISAKSETLKELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        62 ~~~~~~~~~~~v~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+++.+...+....+  +..-..++|.+..++.+...+..          .....+.+.|+|++|+|||+||+.++..
T Consensus        63 ~~~~~~~i~~~i~~~~~--~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A           63 EPKMIELIMNEIMDHGP--PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CHHHHHHHHHHTBCCSC--CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhcccCCC--CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44555555544443322  22335699999999988887642          1122467999999999999999999987


Q ss_pred             HhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHH-HHHHhhCCCceEEEecccccH--------
Q 017364          132 ISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMN-MIRSRLRHKKVLLVIDDVIEL--------  202 (373)
Q Consensus       132 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~--------  202 (373)
                      ...    .++..+.........                    ........ .+.......+.+|+||+++..        
T Consensus       141 ~~~----~~~~i~~~~l~~~~~--------------------g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~  196 (357)
T 3d8b_A          141 SGA----TFFSISASSLTSKWV--------------------GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE  196 (357)
T ss_dssp             TTC----EEEEEEGGGGCCSST--------------------THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----
T ss_pred             cCC----eEEEEehHHhhcccc--------------------chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc
Confidence            632    222222222111100                    00011111 112222356789999999543        


Q ss_pred             -----HHHHHHhcC----CCCCCCCcEEEEEeCChhhH---hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHH
Q 017364          203 -----QQLESLAGK----HDWFGIGSRIFITSRDKHLL---MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQ  270 (373)
Q Consensus       203 -----~~l~~l~~~----~~~~~~g~~iliTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~  270 (373)
                           ..+..++..    ......+..||.||......   ..-.....+.++..+.++..+++...+......  ...+
T Consensus       197 ~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~  274 (357)
T 3d8b_A          197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEE  274 (357)
T ss_dssp             -CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHH
T ss_pred             chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHH
Confidence                 112222221    11112345566666554221   111344578899999999999987766332211  1235


Q ss_pred             HHHHHHHHhCC-CchHHHHHHHH
Q 017364          271 LSKSVVKYAGG-LPLALKVLGSF  292 (373)
Q Consensus       271 ~~~~i~~~~~g-~Plal~~~~~~  292 (373)
                      ....+++.+.| .+-.|..++..
T Consensus       275 ~l~~la~~t~G~s~~dl~~l~~~  297 (357)
T 3d8b_A          275 EIEQIVQQSDAFSGADMTQLCRE  297 (357)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHH
Confidence            67889999988 55667777654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.93  E-value=2.5e-08  Score=91.12  Aligned_cols=202  Identities=13%  Similarity=0.040  Sum_probs=107.2

Q ss_pred             ccCcccchhhHHHH---HHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           84 LKELVGLDSRLEKL---RFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        84 ~~~~vGR~~~~~~l---~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ...++|++...+.+   ...+..+....+.+.|+|++|+|||+||+.+++.+....+.... ....-.+..........+
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  121 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI-AGSEIFSLEMSKTEALTQ  121 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE-EGGGGSCSSSCHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccc-cchhhhhcccchhHHHHH
Confidence            45799999886664   44555543334689999999999999999999987643222111 111111112222222222


Q ss_pred             HHHHHhCC--------------------CC--------CC-CcchhhhHHHHHHhh-----CCC----ceEEEecccccH
Q 017364          161 LISQLLNL--------------------PD--------SG-VWNVYDGMNMIRSRL-----RHK----KVLLVIDDVIEL  202 (373)
Q Consensus       161 ~~~~~~~~--------------------~~--------~~-~~~~~~~~~~l~~~l-----~~~----~~LlvlDdv~~~  202 (373)
                      .+....+.                    ..        .. ..........+....     .++    +.+|+||+++..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l  201 (368)
T 3uk6_A          122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML  201 (368)
T ss_dssp             HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred             HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence            22221110                    00        00 000111111121111     122    459999999743


Q ss_pred             --HHHHHHhcCCCCCCCCcEEEEEeCC-----------------hhhHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCC
Q 017364          203 --QQLESLAGKHDWFGIGSRIFITSRD-----------------KHLLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHK  263 (373)
Q Consensus       203 --~~l~~l~~~~~~~~~g~~iliTtR~-----------------~~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~  263 (373)
                        .....+...+...... .++++|..                 +.+..   ....+.+++++.++..+++...+.....
T Consensus       202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~~~~~~~  277 (368)
T 3uk6_A          202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIRCEEEDV  277 (368)
T ss_dssp             BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence              3344444333322223 34444431                 11222   2245799999999999999877643222


Q ss_pred             CCchHHHHHHHHHHHhC-CCchHHHHHHHH
Q 017364          264 PWKGYEQLSKSVVKYAG-GLPLALKVLGSF  292 (373)
Q Consensus       264 ~~~~~~~~~~~i~~~~~-g~Plal~~~~~~  292 (373)
                      .  ...+..+.+++.+. |.|..+..+...
T Consensus       278 ~--~~~~~l~~l~~~~~~G~~r~~~~ll~~  305 (368)
T 3uk6_A          278 E--MSEDAYTVLTRIGLETSLRYAIQLITA  305 (368)
T ss_dssp             C--BCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            2  23456888999998 888877666544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.91  E-value=3.1e-08  Score=92.42  Aligned_cols=202  Identities=18%  Similarity=0.115  Sum_probs=111.2

Q ss_pred             cCcc-cchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccce-EEEeechhhhcccCHHHHHHH
Q 017364           85 KELV-GLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS-CFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        85 ~~~v-GR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ..|+ |....  ...+......... ...+.|+|++|+||||||+.+++.+...++.. +.+.+...         +...
T Consensus       105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~---------~~~~  174 (440)
T 2z4s_A          105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK---------FLND  174 (440)
T ss_dssp             GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH---------HHHH
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH---------HHHH
Confidence            3465 65543  3333333333221 56799999999999999999999876554222 22222211         1222


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----HHHHHhcCCCC-CCCCcEEEEEeCChh------
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----QLESLAGKHDW-FGIGSRIFITSRDKH------  229 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~l~~l~~~~~~-~~~g~~iliTtR~~~------  229 (373)
                      +...+...          ....+...+..++.+|+|||++...    ..+.+...+.. ...|..||+||++..      
T Consensus       175 ~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l  244 (440)
T 2z4s_A          175 LVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF  244 (440)
T ss_dssp             HHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred             HHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence            22222111          1222344444367799999995422    22222221100 123667888888632      


Q ss_pred             ---hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHh------cC--CCH
Q 017364          230 ---LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFL------FG--RTI  298 (373)
Q Consensus       230 ---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l------~~--~~~  298 (373)
                         +...+.....+.+++++.++..+++...+......  ...+....|+..+.|++..+.-+...+      .+  -+.
T Consensus       245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~  322 (440)
T 2z4s_A          245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDL  322 (440)
T ss_dssp             CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCH
Confidence               22223233578899999999999998776321111  112457788899999998765544332      12  244


Q ss_pred             HHHHHHHHHh
Q 017364          299 AEWESALQRL  308 (373)
Q Consensus       299 ~~~~~~l~~l  308 (373)
                      +.+..++..+
T Consensus       323 ~~~~~~l~~~  332 (440)
T 2z4s_A          323 KEAILLLKDF  332 (440)
T ss_dssp             HHHHHHTSTT
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.89  E-value=1.2e-07  Score=84.81  Aligned_cols=183  Identities=14%  Similarity=0.076  Sum_probs=105.7

Q ss_pred             cCcccchhhHHHHHHHHh----------cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLIN----------KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+..++.+...+.          ......+-+.|+|++|+|||+||+.+++.....    ++..+.......   
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~---   90 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK---   90 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTT---
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhc---
Confidence            568999999988888772          112224679999999999999999999876432    222222111100   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhH-HHHHHhhCCCceEEEecccccHH-------------HHHHHh---cCCCCCCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGM-NMIRSRLRHKKVLLVIDDVIELQ-------------QLESLA---GKHDWFGI  217 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~---~~~~~~~~  217 (373)
                                .       .......+ ..+.......+.+|+||+++...             ....++   ........
T Consensus        91 ----------~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  153 (322)
T 3eie_A           91 ----------W-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ  153 (322)
T ss_dssp             ----------T-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred             ----------c-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence                      0       00111111 11222224567899999997431             122222   21111234


Q ss_pred             CcEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHHHHHh
Q 017364          218 GSRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALKVLGSFL  293 (373)
Q Consensus       218 g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~l  293 (373)
                      +..||.||.....+.   .-.....+.++..+.++-.+++...+......  ........+++.+.| .+-.|..++...
T Consensus       154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~~~a  231 (322)
T 3eie_A          154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVKDA  231 (322)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred             ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            566666776543211   01345678899999999999998877443222  123457788888887 455666665443

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.88  E-value=1.2e-07  Score=82.16  Aligned_cols=184  Identities=14%  Similarity=0.108  Sum_probs=100.3

Q ss_pred             cCcccchhhHHHHHHHHh---cC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLIN---KG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+...+.+...+.   ..       ....+.+.|+|++|+|||+||+.+++.....    +...+.........-
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~----~~~~~~~~~~~~~~~   81 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP----FLAMAGAEFVEVIGG   81 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC----EEEEETTTTSSSSTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHhhccC
Confidence            468898887777765543   11       1224568899999999999999999876432    222222211110000


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-----------------HHHHHHhcCCCC--C
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-----------------QQLESLAGKHDW--F  215 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------------~~l~~l~~~~~~--~  215 (373)
                                         .........+.......+.+|+||+++..                 ..+..++..+..  .
T Consensus        82 -------------------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  142 (262)
T 2qz4_A           82 -------------------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT  142 (262)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred             -------------------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence                               00011112223333456789999999754                 112333322111  1


Q ss_pred             CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHH
Q 017364          216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVL  289 (373)
Q Consensus       216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~  289 (373)
                      ..+..+|.||........     ......+.+++++.++..+++...+...... .........+.+.+.|++- .|..+
T Consensus       143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l  221 (262)
T 2qz4_A          143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANI  221 (262)
T ss_dssp             TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred             CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHH
Confidence            235566667765432211     1234678899999999999998776332222 1222235778888888754 55555


Q ss_pred             HHH
Q 017364          290 GSF  292 (373)
Q Consensus       290 ~~~  292 (373)
                      ...
T Consensus       222 ~~~  224 (262)
T 2qz4_A          222 CNE  224 (262)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.88  E-value=2.6e-08  Score=90.50  Aligned_cols=197  Identities=12%  Similarity=0.054  Sum_probs=104.8

Q ss_pred             ccCcccchhhHHHHHHHH-hcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeech----------------
Q 017364           84 LKELVGLDSRLEKLRFLI-NKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVR----------------  146 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~----------------  146 (373)
                      -..++|.+..++.+...+ ..+. ... +.|+|++|+||||+++.+++.+.......+.+....                
T Consensus        13 ~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~   90 (354)
T 1sxj_E           13 LNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS   90 (354)
T ss_dssp             GGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred             HHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence            356999999999999888 5442 234 899999999999999999996532211111110000                


Q ss_pred             ----hhhc-ccC--HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCC
Q 017364          147 ----EISK-KSG--LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGI  217 (373)
Q Consensus       147 ----~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~  217 (373)
                          .... ...  .....+..+..+......     .... .+. .+..++-++|+|+++..  .....+...+.....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~  163 (354)
T 1sxj_E           91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  163 (354)
T ss_dssp             SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             cceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence                0000 000  000111222221110000     0000 000 01335679999998642  222222222211124


Q ss_pred             CcEEEEEeCChhh-Hhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchH-HHHHHHHHHHhCCCchHHHHHHH
Q 017364          218 GSRIFITSRDKHL-LMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGY-EQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       218 g~~iliTtR~~~~-~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      ++.+|++|++... ... ......+.+.+++.++....+...+......  .. .+....|++.++|.+..+..+..
T Consensus       164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~  238 (354)
T 1sxj_E          164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE  238 (354)
T ss_dssp             TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence            6778888886431 111 1123679999999999999998766321111  11 35678899999999987766553

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.87  E-value=1.3e-07  Score=90.19  Aligned_cols=188  Identities=16%  Similarity=0.135  Sum_probs=103.7

Q ss_pred             ccCcccchhhHHHHHHHHhcCC---------------CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhh
Q 017364           84 LKELVGLDSRLEKLRFLINKGP---------------TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREI  148 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~  148 (373)
                      ...++|++..++.+..++....               ...+.+.|+|++|+||||+|+.+++.+.    ..+...+..  
T Consensus        38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s--  111 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNAS--  111 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTT--
T ss_pred             HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCC--
Confidence            3579999999999999887410               1247899999999999999999998773    122222221  


Q ss_pred             hcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHH--HhhCCCceEEEecccccH--------HHHHHHhcCCCCCCCC
Q 017364          149 SKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIR--SRLRHKKVLLVIDDVIEL--------QQLESLAGKHDWFGIG  218 (373)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~~~~LlvlDdv~~~--------~~l~~l~~~~~~~~~g  218 (373)
                       ..... ......+.......     +.........  .....++.+|++|+++..        ..+..++...     +
T Consensus       112 -~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-----~  179 (516)
T 1sxj_A          112 -DVRSK-TLLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-----S  179 (516)
T ss_dssp             -SCCCH-HHHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-----S
T ss_pred             -CcchH-HHHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-----C
Confidence             11111 11111111111100     0000000000  011356789999999643        2333333321     2


Q ss_pred             cEEEEEeCChh---hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          219 SRIFITSRDKH---LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       219 ~~iliTtR~~~---~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      ..+|+++.+..   +.........+.+++++.++..+++...+......  ...+....|++.++|.+..+..+..
T Consensus       180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L~  253 (516)
T 1sxj_A          180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLLS  253 (516)
T ss_dssp             SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence            33555554432   11112234578999999999999887765321111  1123577899999996655444433

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.85  E-value=2.9e-07  Score=83.42  Aligned_cols=183  Identities=14%  Similarity=0.084  Sum_probs=103.5

Q ss_pred             cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+..++.+...+..          .....+-+.|+|++|+|||+||+.+++.....    ++..+...+...   
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~---  123 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK---  123 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC---
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh---
Confidence            5689999988888876621          11123558999999999999999999987432    222222111100   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHHhcC---CCCCCCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESLAGK---HDWFGIG  218 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~~~---~~~~~~g  218 (373)
                                ..+      .........+.......+.+|+||+++...             ....++..   ......+
T Consensus       124 ----------~~g------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~  187 (355)
T 2qp9_X          124 ----------WMG------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG  187 (355)
T ss_dssp             ----------C---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred             ----------hcc------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence                      000      001111111222224578899999997432             12222221   1111235


Q ss_pred             cEEEEEeCChhhH---hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHH
Q 017364          219 SRIFITSRDKHLL---MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSF  292 (373)
Q Consensus       219 ~~iliTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~  292 (373)
                      ..||.||......   ..-.....+.++..+.++..+++..........  ........|++.+.|. +-.|..++..
T Consensus       188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~~~  263 (355)
T 2qp9_X          188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVVKD  263 (355)
T ss_dssp             EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5566666644211   111355678899999999999998776432211  1234578889999884 5556666543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.85  E-value=4.5e-08  Score=88.26  Aligned_cols=176  Identities=18%  Similarity=0.105  Sum_probs=104.8

Q ss_pred             ccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ...++|++..++.+..++...   ....+.+.|+|++|+|||+||+.+++.....|    ...+....   ....     
T Consensus        28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~~---~~~~-----   95 (338)
T 3pfi_A           28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPMI---EKSG-----   95 (338)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGGC---CSHH-----
T ss_pred             HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchhc---cchh-----
Confidence            457999999999988888642   22345689999999999999999988754332    11121111   1100     


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHh---cCCC---------------CCCCCcE
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLA---GKHD---------------WFGIGSR  220 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~---~~~~---------------~~~~g~~  220 (373)
                                       .....+..  ..++.+|+||+++..  .....+.   ....               ...++..
T Consensus        96 -----------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T 3pfi_A           96 -----------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT  156 (338)
T ss_dssp             -----------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred             -----------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence                             11111111  235678999999743  2222222   1110               0011345


Q ss_pred             EEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364          221 IFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSF  292 (373)
Q Consensus       221 iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  292 (373)
                      +|.+|.......   .......+.+++++.++...++...+....  .....+..+.+++.+.|+|..+..+...
T Consensus       157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~  229 (338)
T 3pfi_A          157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKR  229 (338)
T ss_dssp             EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            666666532211   112346899999999999999987763322  1123466788889999999776655544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.84  E-value=5e-08  Score=90.93  Aligned_cols=180  Identities=16%  Similarity=0.174  Sum_probs=105.8

Q ss_pred             cccCcccchhhH---HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHH
Q 017364           83 TLKELVGLDSRL---EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQK  159 (373)
Q Consensus        83 ~~~~~vGR~~~~---~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  159 (373)
                      .-..++|.+..+   +.+...+..+.-  +.+.|+|++|+||||||+.+++.....|...    +..    ...... .+
T Consensus        24 ~l~~ivGq~~~~~~~~~L~~~i~~~~~--~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l----~a~----~~~~~~-ir   92 (447)
T 3pvs_A           24 NLAQYIGQQHLLAAGKPLPRAIEAGHL--HSMILWGPPGTGKTTLAEVIARYANADVERI----SAV----TSGVKE-IR   92 (447)
T ss_dssp             STTTCCSCHHHHSTTSHHHHHHHHTCC--CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE----ETT----TCCHHH-HH
T ss_pred             CHHHhCCcHHHHhchHHHHHHHHcCCC--cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE----Eec----cCCHHH-HH
Confidence            345799999888   788888886633  6799999999999999999998775433211    110    111111 11


Q ss_pred             HHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEE-EeCChhh--H-hh
Q 017364          160 QLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFI-TSRDKHL--L-MA  233 (373)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~ili-TtR~~~~--~-~~  233 (373)
                      .++...                 ......+++.+|+||+++...  ..+.++..+..  ....+|. ||.+...  . ..
T Consensus        93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL  153 (447)
T 3pvs_A           93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL  153 (447)
T ss_dssp             HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred             HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence            111110                 011124567899999997532  22223322221  1233444 4444421  1 11


Q ss_pred             cCCCceEeCCCCCHhHHHHHHHHhhcCCC-----CCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 017364          234 HGVDEVYMHEHLNYDEALGLFCLKAFKSH-----KPWKGYEQLSKSVVKYAGGLPLALKVLGSF  292 (373)
Q Consensus       234 ~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  292 (373)
                      ......+.+.+++.++...++........     .......+..+.+++.++|++..+..+...
T Consensus       154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~  217 (447)
T 3pvs_A          154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM  217 (447)
T ss_dssp             HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            12335788999999999999987764311     112234567888999999999877655543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.82  E-value=4.8e-07  Score=80.80  Aligned_cols=185  Identities=15%  Similarity=0.090  Sum_probs=103.7

Q ss_pred             cCcccchhhHHHHHHHHhc---------C-CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK---------G-PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~---------~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+...+.+...+..         + ....+-+.|+|++|+|||+||+.+++....   ..++..+.......   
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~---   85 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK---   85 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS---
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh---
Confidence            4688888888877766521         1 122367999999999999999999987621   11222111111000   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcC---CCCCCCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGK---HDWFGIG  218 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~---~~~~~~g  218 (373)
                                    .  ...........+...-..++.+|+||+++..             .....++..   ......+
T Consensus        86 --------------~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~  149 (322)
T 1xwi_A           86 --------------W--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG  149 (322)
T ss_dssp             --------------S--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred             --------------h--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence                          0  0001111111222222456789999999754             112222221   1111235


Q ss_pred             cEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHHh
Q 017364          219 SRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSFL  293 (373)
Q Consensus       219 ~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l  293 (373)
                      ..||.||.......   .-.....+.++..+.++..+++..........  ........|++.+.|+ +-.|..++...
T Consensus       150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~A  226 (322)
T 1xwi_A          150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRDA  226 (322)
T ss_dssp             EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            55665665432111   11355678899999999999998776432211  1234578899999887 44576666543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.81  E-value=3.6e-07  Score=81.80  Aligned_cols=180  Identities=14%  Similarity=0.114  Sum_probs=97.7

Q ss_pred             cCcc-cchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHH
Q 017364           85 KELV-GLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        85 ~~~v-GR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      +.|+ |....  ...+.............+.|+|++|+||||||+.+++.+.......+++. ...         +...+
T Consensus        11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~---------~~~~~   80 (324)
T 1l8q_A           11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADD---------FAQAM   80 (324)
T ss_dssp             SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHH---------HHHHH
T ss_pred             ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHH---------HHHHH
Confidence            3455 54432  44445555443223467899999999999999999998754422333332 211         11122


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----HHHHHhcCCC-CCCCCcEEEEEeCChh-------
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----QLESLAGKHD-WFGIGSRIFITSRDKH-------  229 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~l~~l~~~~~-~~~~g~~iliTtR~~~-------  229 (373)
                      ...+..          .....+...+. ++.+|+|||++...    ....+...+. ....+..+|+|+.+..       
T Consensus        81 ~~~~~~----------~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~  149 (324)
T 1l8q_A           81 VEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS  149 (324)
T ss_dssp             HHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred             HHHHHc----------CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence            222110          01112222222 36689999986432    1122211110 0123556888776432       


Q ss_pred             --hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          230 --LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       230 --~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                        +...+.....+.+++ +.++..+++...+......  ...+..+.+++.+ |++-.+..+
T Consensus       150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l~~~  207 (324)
T 1l8q_A          150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREIEGK  207 (324)
T ss_dssp             HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHHHHH
T ss_pred             hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHHHHH
Confidence              222222335789999 9999999998876432222  2245678888888 887654443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.79  E-value=6.2e-08  Score=79.08  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...++||+.+++.+...+....  .+.+.|+|++|+|||+||+.+++.+..
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3569999999999999987643  366799999999999999999998754

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.78  E-value=3.7e-07  Score=82.09  Aligned_cols=182  Identities=13%  Similarity=0.063  Sum_probs=101.0

Q ss_pred             hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHH----H-
Q 017364           91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQ----L-  165 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  165 (373)
                      +...+.+...+..+. -.+.+.++|++|+|||++|+.+++.+....... .. .+       +.......+...    + 
T Consensus         8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~-~c-------~~c~~c~~~~~~~~~d~~   77 (334)
T 1a5t_A            8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HK-SC-------GHCRGCQLMQAGTHPDYY   77 (334)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TB-CC-------SCSHHHHHHHHTCCTTEE
T ss_pred             HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CC-CC-------CCCHHHHHHhcCCCCCEE
Confidence            345667777776542 246799999999999999999999865332110 00 00       000000000000    0 


Q ss_pred             -hCCC-CCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhh-c
Q 017364          166 -LNLP-DSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMA-H  234 (373)
Q Consensus       166 -~~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~-~  234 (373)
                       .... .......+... .+.+.+     .+++-++|+|+++.  ......++..+.....++.+|++|.+.. +... .
T Consensus        78 ~~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~  156 (334)
T 1a5t_A           78 TLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR  156 (334)
T ss_dssp             EECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred             EEeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence             0000 00111122211 222222     34567899999974  3334444444433345677777777653 2211 1


Q ss_pred             CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          235 GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       235 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      .....+.+.+++.++..+++....   .    ...+.+..+++.++|.|..+..+.
T Consensus       157 SRc~~~~~~~~~~~~~~~~L~~~~---~----~~~~~~~~l~~~s~G~~r~a~~~l  205 (334)
T 1a5t_A          157 SRCRLHYLAPPPEQYAVTWLSREV---T----MSQDALLAALRLSAGSPGAALALF  205 (334)
T ss_dssp             TTSEEEECCCCCHHHHHHHHHHHC---C----CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred             hcceeeeCCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHHHh
Confidence            233579999999999999998775   1    123456789999999998765543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.77  E-value=2.5e-07  Score=85.06  Aligned_cols=184  Identities=15%  Similarity=0.059  Sum_probs=102.3

Q ss_pred             ccCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           84 LKELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      -..++|.+..++.+...+..          .....+.+.|+|++|+|||+||+.++.....    .++..++......  
T Consensus       114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~--  187 (389)
T 3vfd_A          114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSK--  187 (389)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC-----
T ss_pred             hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhcc--
Confidence            35799999999999887731          0112367999999999999999999887542    2222222111100  


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcC----CCCCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGK----HDWFG  216 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~----~~~~~  216 (373)
                         .        .+      .........+.......+.+|+||+++..             .....++..    .....
T Consensus       188 ---~--------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  250 (389)
T 3vfd_A          188 ---Y--------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD  250 (389)
T ss_dssp             ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred             ---c--------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence               0        00      00011111122222345679999999753             111122111    11112


Q ss_pred             CCcEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHHHHHH
Q 017364          217 IGSRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKVLGSF  292 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~  292 (373)
                      ....||.||.....+.   .-.....+.++..+.++...++...+......  ...+....+++.+.|+.- .|..+...
T Consensus       251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~~  328 (389)
T 3vfd_A          251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAKD  328 (389)
T ss_dssp             -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            2455666665432211   11344578899999999999998776432222  223467889999988655 66666544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.77  E-value=6.2e-07  Score=80.83  Aligned_cols=183  Identities=13%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      -..++|.+..++.+...+..+.  .+.+.++|++|+||||+|+.+++.+.... ...+.-.+.   +.......+ +..+
T Consensus        24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~~~~~~i-r~~i   97 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVV-RNQI   97 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHH-HTHH
T ss_pred             HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---cccccHHHH-HHHH
Confidence            3458899999999999988763  23389999999999999999999865331 111111111   111111111 1111


Q ss_pred             HHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-Hhh-cCCCc
Q 017364          163 SQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHL-LMA-HGVDE  238 (373)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~-~~~~~  238 (373)
                      ..+....               ..+.+.+-++|+|+++..  .....+...+......+.+|+++....- ... .....
T Consensus        98 ~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~  162 (340)
T 1sxj_C           98 KDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT  162 (340)
T ss_dssp             HHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             HHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence            1111000               001234678999998642  2222232222111235667777655421 111 11234


Q ss_pred             eEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 017364          239 VYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVL  289 (373)
Q Consensus       239 ~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  289 (373)
                      .+.+.+++.++..+.+...+......  ...+....+++.++|.+.-+..+
T Consensus       163 ~~~~~~l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~~~  211 (340)
T 1sxj_C          163 RFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVLNV  211 (340)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred             eEeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            78899999999998887665222211  22456788999999998854433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.75  E-value=3.9e-07  Score=80.47  Aligned_cols=181  Identities=15%  Similarity=0.081  Sum_probs=102.7

Q ss_pred             ccCcccchhhHHHHHHHHhcC----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           84 LKELVGLDSRLEKLRFLINKG----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      -..++|.+..++.+...+...          ....+.+.|+|++|+|||+||+.++......    +...+........ 
T Consensus        20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~----~~~i~~~~l~~~~-   94 (297)
T 3b9p_A           20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT----FLNISAASLTSKY-   94 (297)
T ss_dssp             GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE----EEEEESTTTSSSS-
T ss_pred             HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC----eEEeeHHHHhhcc-
Confidence            356999999998888776320          1123678999999999999999999876432    2222221111000 


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhH-HHHHHhhCCCceEEEecccccH-------------HHHHHHh---cCCCC--
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGM-NMIRSRLRHKKVLLVIDDVIEL-------------QQLESLA---GKHDW--  214 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~---~~~~~--  214 (373)
                                         ........ ..+.......+.+|+||+++..             .....++   ...+.  
T Consensus        95 -------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~  155 (297)
T 3b9p_A           95 -------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP  155 (297)
T ss_dssp             -------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred             -------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence                               00111111 1122222456789999998643             1111121   11111  


Q ss_pred             CCCCcEEEEEeCChh-----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHH
Q 017364          215 FGIGSRIFITSRDKH-----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKV  288 (373)
Q Consensus       215 ~~~g~~iliTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~  288 (373)
                      .+.+..||.||....     +..  .....+.++..+.++...++...+......  ........+++.+.|++- .|..
T Consensus       156 ~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~  231 (297)
T 3b9p_A          156 DGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTA  231 (297)
T ss_dssp             ---CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred             CCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence            123455666776543     222  244678888888888888887765332211  123457889999999886 6666


Q ss_pred             HHHH
Q 017364          289 LGSF  292 (373)
Q Consensus       289 ~~~~  292 (373)
                      +...
T Consensus       232 l~~~  235 (297)
T 3b9p_A          232 LAKD  235 (297)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.71  E-value=1.1e-07  Score=84.47  Aligned_cols=150  Identities=13%  Similarity=0.085  Sum_probs=85.1

Q ss_pred             CcccchhhHHHHHHHHhc-------------CCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc---ceEEEeechhhh
Q 017364           86 ELVGLDSRLEKLRFLINK-------------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE---ASCFLANVREIS  149 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~-------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~  149 (373)
                      .++|.+...+.+...+..             .......+.|+|++|+|||+||+.+++.+.....   ..+...+.....
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~  111 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV  111 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence            588988888777765541             1223457899999999999999999987654221   112222221111


Q ss_pred             cccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc-----------HHHHHHHhcCCCCCCCC
Q 017364          150 KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE-----------LQQLESLAGKHDWFGIG  218 (373)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~-----------~~~l~~l~~~~~~~~~g  218 (373)
                      ...             .      ..........+...   .+.+|+||+++.           ...+..+...+.....+
T Consensus       112 ~~~-------------~------g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~  169 (309)
T 3syl_A          112 GQY-------------I------GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD  169 (309)
T ss_dssp             CSS-------------T------TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred             hhc-------------c------cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence            000             0      00001111112221   345999999973           33334444333222345


Q ss_pred             cEEEEEeCChh----------hHhhcCCCceEeCCCCCHhHHHHHHHHhhc
Q 017364          219 SRIFITSRDKH----------LLMAHGVDEVYMHEHLNYDEALGLFCLKAF  259 (373)
Q Consensus       219 ~~iliTtR~~~----------~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~  259 (373)
                      ..+|+||....          +...  ....+.+++++.++..+++...+.
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~  218 (309)
T 3syl_A          170 LVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD  218 (309)
T ss_dssp             CEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred             EEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence            67777776432          1122  236789999999999999977763

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.71  E-value=8e-07  Score=82.99  Aligned_cols=186  Identities=16%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             ccCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           84 LKELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      -..++|.+...+.+...+..          .....+.+.|+|++|+|||+||+.++.....   ..++..+...+     
T Consensus       133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l-----  204 (444)
T 2zan_A          133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDL-----  204 (444)
T ss_dssp             GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC-------
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHH-----
Confidence            35689999988888876621          1122467999999999999999999987621   12222111110     


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HHHHHHhcCCCC---CCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQLESLAGKHDW---FGI  217 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~l~~l~~~~~~---~~~  217 (373)
                              .....+..   ....   ...+...-...+.+|+||+++..             .....++..+..   ...
T Consensus       205 --------~~~~~g~~---~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~  270 (444)
T 2zan_A          205 --------VSKWLGES---EKLV---KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND  270 (444)
T ss_dssp             ---------------C---CCTH---HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred             --------HhhhcchH---HHHH---HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence                    01111111   1111   11222222456789999999753             233445544432   134


Q ss_pred             CcEEEEEeCChhhHh---hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHHHh
Q 017364          218 GSRIFITSRDKHLLM---AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGSFL  293 (373)
Q Consensus       218 g~~iliTtR~~~~~~---~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l  293 (373)
                      +..||.||.......   .-.....+.++..+.++...++..+.......  ........|++.+.|+ +-.|..++...
T Consensus       271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~a  348 (444)
T 2zan_A          271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIVRDA  348 (444)
T ss_dssp             SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            566666776543211   11345678899999999999998776432211  1234578899999884 55666665543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.71  E-value=5e-07  Score=79.98  Aligned_cols=174  Identities=14%  Similarity=0.139  Sum_probs=99.0

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ..++|.+..++.+...+..           +-...+.+.|+|++|+|||+||+.+++.....    +...+..       
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~~-------   83 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGP-------   83 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECHH-------
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEhH-------
Confidence            4689999888888776642           12234679999999999999999999876422    2221111       


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHHH----------------HHHHhcCCC--CC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQ----------------LESLAGKHD--WF  215 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------------l~~l~~~~~--~~  215 (373)
                            .+.....+..      .......+.......+.+|+||+++....                ...++..+.  ..
T Consensus        84 ------~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~  151 (301)
T 3cf0_A           84 ------ELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST  151 (301)
T ss_dssp             ------HHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred             ------HHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence                  1112222221      11122233333345689999999974221                122222111  01


Q ss_pred             CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCC-CCchHHHHHHHHHHHhCCCchH
Q 017364          216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHK-PWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      ..+..||.||........     ......+.++.++.++-.+++......... ....    ...++..+.|.|-+
T Consensus       152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~  223 (301)
T 3cf0_A          152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA  223 (301)
T ss_dssp             TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred             CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence            235667777765532211     124467899999999999998776633221 1111    34566677777654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.70  E-value=2e-07  Score=83.53  Aligned_cols=177  Identities=13%  Similarity=0.075  Sum_probs=100.8

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLIS  163 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (373)
                      -..++|.+..++.+..++..+. .++.+.+.|++|+|||++|+.+++.+...   .+.+ +...    .. .......+.
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i-~~~~----~~-~~~i~~~~~   94 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFV-NGSD----CK-IDFVRGPLT   94 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEE-ETTT----CC-HHHHHTHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEE-cccc----cC-HHHHHHHHH
Confidence            4679999999999999998552 24678889999999999999999876422   1222 2111    11 111121111


Q ss_pred             HHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH---HHHHHhcCCCCCCCCcEEEEEeCChhh-----HhhcC
Q 017364          164 QLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ---QLESLAGKHDWFGIGSRIFITSRDKHL-----LMAHG  235 (373)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~l~~l~~~~~~~~~g~~iliTtR~~~~-----~~~~~  235 (373)
                      ......                .+.+++.++++||++...   ....+...+.....+..+|+||....-     ...  
T Consensus        95 ~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR--  156 (324)
T 3u61_B           95 NFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR--  156 (324)
T ss_dssp             HHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH--
T ss_pred             HHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh--
Confidence            110000                012367899999997543   333333322211235678888776531     122  


Q ss_pred             CCceEeCCCCCHhHHHHHH-------HHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          236 VDEVYMHEHLNYDEALGLF-------CLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       236 ~~~~~~l~~L~~~ea~~l~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                       ...+.+++++.++-.+++       ...+....... ...+....+++.++|++..+....
T Consensus       157 -~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a~~~L  216 (324)
T 3u61_B          157 -CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKTIGEL  216 (324)
T ss_dssp             -SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHHHHHH
T ss_pred             -CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHHHHHH
Confidence             247899999988843332       22221111111 112567889999999887554443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.63  E-value=5.9e-07  Score=84.47  Aligned_cols=147  Identities=10%  Similarity=0.073  Sum_probs=81.8

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      .+.+|||+.+++.+...+.....  ..+.|+|++|+|||+||+.+++.+....      +..++..+..           
T Consensus       179 ld~iiGr~~~i~~l~~~l~r~~~--~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----------  245 (468)
T 3pxg_A          179 LDPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----------  245 (468)
T ss_dssp             SCCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred             CCCccCcHHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----------
Confidence            35699999999999999975433  5578999999999999999999875422      1122221111           


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHh---h-
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLM---A-  233 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~---~-  233 (373)
                           ....+.   ..   ......+...-..++.+|++|  ...+....+.+.+.  ....++|.+|.......   . 
T Consensus       246 -----~~~~g~---~e---~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~  310 (468)
T 3pxg_A          246 -----TKYRGE---FE---DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD  310 (468)
T ss_dssp             ---------------C---TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred             -----ccccch---HH---HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence                 000000   00   111122222334567899999  22233333444433  22345665555443110   0 


Q ss_pred             ---cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          234 ---HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       234 ---~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                         ......+.+++++.++...++....
T Consensus       311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~  338 (468)
T 3pxg_A          311 AALERRFQPIQVDQPSVDESIQILQGLR  338 (468)
T ss_dssp             SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred             HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence               0122468999999999999998665

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.60  E-value=4.9e-07  Score=85.12  Aligned_cols=180  Identities=17%  Similarity=0.115  Sum_probs=101.5

Q ss_pred             cCcccchhhHHHHHHHHhcC-----------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           85 KELVGLDSRLEKLRFLINKG-----------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ..++|.+..++.+...+...           ....+-+.|+|++|+|||+||+.+++...    ..++..++..+.....
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~~l~~~~~  279 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKLA  279 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHHHHHTSCT
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEchHhhhhhc
Confidence            45899999999888876521           23346799999999999999999988653    2223323322211100


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH-------------HH---HHHHhcCCCCCCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL-------------QQ---LESLAGKHDWFGI  217 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------------~~---l~~l~~~~~~~~~  217 (373)
                                         ..........+.....+.+.+|+||+++..             ..   +-.++.... ...
T Consensus       280 -------------------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-~~~  339 (489)
T 3hu3_A          280 -------------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA  339 (489)
T ss_dssp             -------------------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-TTS
T ss_pred             -------------------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-cCC
Confidence                               001111222333444567789999998421             11   222222211 123


Q ss_pred             CcEEEEEeCChhhH-----hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC-chHHHHHHH
Q 017364          218 GSRIFITSRDKHLL-----MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGL-PLALKVLGS  291 (373)
Q Consensus       218 g~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~  291 (373)
                      +..||.||......     ........+.++..+.++-.+++..++.......   .....++++.+.|+ +-.|..+..
T Consensus       340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~~  416 (489)
T 3hu3_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALCS  416 (489)
T ss_dssp             CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHHH
Confidence            45566666655321     1112345789999999999999987763322111   11145567777775 545555543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.56  E-value=1.9e-06  Score=78.12  Aligned_cols=172  Identities=16%  Similarity=0.189  Sum_probs=97.3

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS  152 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~  152 (373)
                      ..+.|-++..+.|...+.-           +-..++-|.++||+|+|||.||+.+++.....|    +......+.. ..
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v  223 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI  223 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence            3467788877777665431           223346699999999999999999999765442    2222221111 11


Q ss_pred             C-HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCC--
Q 017364          153 G-LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHD--  213 (373)
Q Consensus       153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~--  213 (373)
                      + .....                     ...+...-...+++|++|+++...                .+..++..+.  
T Consensus       224 Gese~~v---------------------r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~  282 (405)
T 4b4t_J          224 GEGSRMV---------------------RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF  282 (405)
T ss_dssp             THHHHHH---------------------HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             chHHHHH---------------------HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence            1 11111                     112222335678999999886310                1233332221  


Q ss_pred             CCCCCcEEEEEeCChhhH-----hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          214 WFGIGSRIFITSRDKHLL-----MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       214 ~~~~g~~iliTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      ....+..||.||...+.+     .....+..+.++..+.++-.++|+.+........ ..  ....+++.+.|+--
T Consensus       283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-dv--dl~~lA~~t~G~SG  355 (405)
T 4b4t_J          283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-GI--NLRKVAEKMNGCSG  355 (405)
T ss_dssp             TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-SC--CHHHHHHHCCSCCH
T ss_pred             CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-cC--CHHHHHHHCCCCCH
Confidence            112345566666644322     1124567899999999999999987763322111 11  15667788887654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.52  E-value=2.3e-06  Score=73.84  Aligned_cols=180  Identities=14%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             cCcccchhhHHHHHHHHhc---C-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK---G-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+...+.+...+..   .       ....+-+.|+|++|+||||||+.+++.....|   +.+ +........  
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~~--   85 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEMF--   85 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTSC--
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHHh--
Confidence            5688988877666654321   1       11134589999999999999999998764322   222 111111000  


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--CCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--WFG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~~~  216 (373)
                                 .      ..........+.......+.++++|+++..                ..+..++..+.  ...
T Consensus        86 -----------~------~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~  148 (257)
T 1lv7_A           86 -----------V------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN  148 (257)
T ss_dssp             -----------C------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred             -----------h------hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence                       0      001111222233333456789999998432                12222322111  012


Q ss_pred             CCcEEEEEeCChhhHh-h----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC-CchHHHHHH
Q 017364          217 IGSRIFITSRDKHLLM-A----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGG-LPLALKVLG  290 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~  290 (373)
                      .+..||.||....... .    ......+.++..+.++-.+++...........+   .....++..+.| ++--|..+.
T Consensus       149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l~  225 (257)
T 1lv7_A          149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANLV  225 (257)
T ss_dssp             SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHH
T ss_pred             CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHHH
Confidence            3455666776543211 1    123457888888888888888766532111111   113445666667 665555443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.50  E-value=2.1e-07  Score=72.91  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             CcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           86 ELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++|+...++.+...+..-......|.|+|++|+|||++|+.+++..
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999998888775322222558899999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.50  E-value=1.8e-06  Score=76.64  Aligned_cols=49  Identities=20%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             cCcccchhhHHHHHHHHhc------------CCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINK------------GPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|.+..++.+...+..            .......+.|+|++|+|||++|+.+++.+.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999988888877653            011235688999999999999999998774

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.50  E-value=1.7e-06  Score=86.65  Aligned_cols=154  Identities=12%  Similarity=0.111  Sum_probs=88.3

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      ...++||+.+++.+...|.....  ..+.|+|++|+|||++|+.+++.+...      ....++..+....         
T Consensus       185 ~d~~iGr~~~i~~l~~~l~~~~~--~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------  253 (758)
T 1r6b_X          185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------  253 (758)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred             CCCccCCHHHHHHHHHHHhccCC--CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH---------
Confidence            35699999999999999876533  567899999999999999999986432      1222332211110         


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH----------HHHHHHhcCCCCCCCCcEEEEEeC
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL----------QQLESLAGKHDWFGIGSRIFITSR  226 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------~~l~~l~~~~~~~~~g~~iliTtR  226 (373)
                              ... ..........+..+...+ ..++.+|++|+++..          .....++...-. ..+..+|.+|.
T Consensus       254 --------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~  323 (758)
T 1r6b_X          254 --------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT  323 (758)
T ss_dssp             ---------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred             --------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence                    000 001112222222333333 345789999999743          222233332221 23455666665


Q ss_pred             ChhhHhhc-------CCCceEeCCCCCHhHHHHHHHHhh
Q 017364          227 DKHLLMAH-------GVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       227 ~~~~~~~~-------~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ........       .....+.+++++.++..+++....
T Consensus       324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~  362 (758)
T 1r6b_X          324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  362 (758)
T ss_dssp             HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence            44321111       112368899999999998887554

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.49  E-value=9.6e-07  Score=89.36  Aligned_cols=49  Identities=18%  Similarity=0.323  Sum_probs=41.4

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...++||+.+++.+...+.....  +.+.|+|++|+|||+||+.+++.+..
T Consensus       169 ld~viGr~~~i~~l~~~l~~~~~--~~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          169 LDPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             SCCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CcccCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            35699999999999999876433  55789999999999999999998743

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.48  E-value=1.3e-06  Score=77.14  Aligned_cols=146  Identities=15%  Similarity=0.033  Sum_probs=85.8

Q ss_pred             cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh---ccccceEEEeechhhhcccCHHHHHHHHHHHH
Q 017364           89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS---HEFEASCFLANVREISKKSGLVFLQKQLISQL  165 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (373)
                      |-++.++.+...+..+.  .+.+.++|++|+||||+|+.+++...   ...+....+. ..  ....... ..+.+....
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~--~~~~~id-~ir~li~~~   74 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PE--GENIGID-DIRTIKDFL   74 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CS--SSCBCHH-HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CC--cCCCCHH-HHHHHHHHH
Confidence            44566788888888765  58899999999999999999987531   1122333332 10  0011111 122333332


Q ss_pred             hCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhHhhcCCCceEeC
Q 017364          166 LNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK-HLLMAHGVDEVYMH  242 (373)
Q Consensus       166 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~-~~~~~~~~~~~~~l  242 (373)
                      ...+                 ..+++-++|+|+++.  ....+.++..+....+.+.+|++|.+. .+...+... .+++
T Consensus        75 ~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f  136 (305)
T 2gno_A           75 NYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV  136 (305)
T ss_dssp             TSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred             hhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence            1111                 124466899999874  333444443333223567777777655 333333344 8999


Q ss_pred             CCCCHhHHHHHHHHhh
Q 017364          243 EHLNYDEALGLFCLKA  258 (373)
Q Consensus       243 ~~L~~~ea~~l~~~~~  258 (373)
                      .+++.++..+.+....
T Consensus       137 ~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          137 VVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             ECCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998775

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.47  E-value=4.4e-06  Score=78.05  Aligned_cols=173  Identities=16%  Similarity=0.132  Sum_probs=96.6

Q ss_pred             cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+..++.+...+..          +..-++-+.|+|++|+|||+||+.+++.....    ++..+...+.....-
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~~~~~~g   91 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDFVELFVG   91 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGTTTCCTT
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHHHHHHhc
Confidence            4688988876666655431          11113458899999999999999999876432    222222221111000


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~--~~  216 (373)
                                         .........+.......+.+|+||+++..                ..+..++..+..  ..
T Consensus        92 -------------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~  152 (476)
T 2ce7_A           92 -------------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK  152 (476)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred             -------------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence                               00111222344444567899999998542                123333322110  12


Q ss_pred             CCcEEEEEeCChhhHhh--c---CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          217 IGSRIFITSRDKHLLMA--H---GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~--~---~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      .+..||.||.....+..  .   .....+.+++.+.++-.+++..+........+.   ....+...+.|+.
T Consensus       153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s  221 (476)
T 2ce7_A          153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV  221 (476)
T ss_dssp             GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred             CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence            35667777776643321  1   234578899999888888887665332211111   1445778888887

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.46  E-value=4.5e-06  Score=76.79  Aligned_cols=171  Identities=15%  Similarity=0.165  Sum_probs=95.4

Q ss_pred             CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-ccC
Q 017364           86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KSG  153 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~  153 (373)
                      .+.|-++..+.|...+.-           +-..++-|.++||+|+|||.||+.+++.....|    +......+.. ..+
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~vG  285 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYVG  285 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSSS
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccCC
Confidence            477788877777664321           223357799999999999999999999876432    2222222111 111


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCC--CC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHD--WF  215 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~--~~  215 (373)
                      -                    +.......+...-...+++|++|+++...                .+..++..+.  ..
T Consensus       286 e--------------------sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~  345 (467)
T 4b4t_H          286 E--------------------GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP  345 (467)
T ss_dssp             H--------------------HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred             H--------------------HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence            0                    01111122233335678999999885310                1222222211  11


Q ss_pred             CCCcEEEEEeCChhhH----h-hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          216 GIGSRIFITSRDKHLL----M-AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       216 ~~g~~iliTtR~~~~~----~-~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      ..+..||.||.....+    . ..+.+..+.++..+.++-.++|+.+........ ..  ..+.|++.|.|+-
T Consensus       346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dv--dl~~LA~~T~GfS  415 (467)
T 4b4t_H          346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GI--RWELISRLCPNST  415 (467)
T ss_dssp             TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SC--CHHHHHHHCCSCC
T ss_pred             CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CC--CHHHHHHHCCCCC
Confidence            2344455566544321    1 123567899999999999999987763322111 11  1456778888764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.46  E-value=2.8e-05  Score=69.77  Aligned_cols=175  Identities=18%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             ccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      -..++|.+..++.+...+..+   ......++|+|++|+|||||++.+++.+...+.    .... ..  ......    
T Consensus        24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~sg-~~--~~~~~~----   92 (334)
T 1in4_A           24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSG-PV--LVKQGD----   92 (334)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEET-TT--CCSHHH----
T ss_pred             HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEec-hH--hcCHHH----
Confidence            356889888888888877643   222366999999999999999999998743221    1110 00  000000    


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHh---cCCCC-----CC----------CCcE
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLA---GKHDW-----FG----------IGSR  220 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~---~~~~~-----~~----------~g~~  220 (373)
                                        ... +...+ .++.++++|+++..  ...+.+.   .....     .+          +...
T Consensus        93 ------------------l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~  152 (334)
T 1in4_A           93 ------------------MAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT  152 (334)
T ss_dssp             ------------------HHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred             ------------------HHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence                              000 11111 23457778877532  1222221   11100     00          0122


Q ss_pred             EEE-EeCChhhHh--hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 017364          221 IFI-TSRDKHLLM--AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGS  291 (373)
Q Consensus       221 ili-TtR~~~~~~--~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  291 (373)
                      ++. |++...+..  .........+++.+.++..+++.+.+......  ...+.+..|++.++|.|..+..+..
T Consensus       153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~  224 (334)
T 1in4_A          153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTK  224 (334)
T ss_dssp             EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHH
Confidence            332 333322211  11233468899999999999998776322211  3346688999999999986655443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.44  E-value=6.7e-07  Score=72.74  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             chhhHHHHHHHHhcCC-CCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           90 LDSRLEKLRFLINKGP-TDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ....++.+..++..-. .....++|+|++|+|||||++.+++.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~   64 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE   64 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3344555555554321 12378999999999999999999998763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.44  E-value=2.4e-06  Score=78.70  Aligned_cols=172  Identities=20%  Similarity=0.200  Sum_probs=96.6

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS  152 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~  152 (373)
                      ..+.|-++..+.|...+.-           +-..++-|.++||+|+|||+||+.+++.....|    +......+.. ..
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~~  256 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKYI  256 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSSS
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhccccc
Confidence            3467888877777665431           223357799999999999999999999775432    2222222111 11


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--C
Q 017364          153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--W  214 (373)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~  214 (373)
                      +-                    +.......+...-...+++|++|+++..                ..+..++..+.  .
T Consensus       257 Ge--------------------se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~  316 (437)
T 4b4t_L          257 GE--------------------SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD  316 (437)
T ss_dssp             SH--------------------HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred             hH--------------------HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence            10                    0111111222333567899999988631                01223332221  1


Q ss_pred             CCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCch
Q 017364          215 FGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       215 ~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      ...+..||.||.....+..     ...+..+.++..+.++-.++|+.+..... ....+    ...+++.+.|+--
T Consensus       317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG  388 (437)
T 4b4t_L          317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG  388 (437)
T ss_dssp             CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred             CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence            1234567777765543322     11345788888899998899887763322 11111    4567777877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=4e-06  Score=77.10  Aligned_cols=171  Identities=20%  Similarity=0.209  Sum_probs=90.4

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhh-hccc
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREI-SKKS  152 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~  152 (373)
                      ..+.|-+...+.|...+..           +-..++-+.++||+|+|||+||+.+++.....|    +..+.... +...
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~~  247 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKYL  247 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSSC
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcccc
Confidence            3577888877777665431           223356799999999999999999999775432    22222211 1111


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCC--C
Q 017364          153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHD--W  214 (373)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~--~  214 (373)
                      +-                    +...+...+...-...++++++|+++...                .+..++....  .
T Consensus       248 Ge--------------------~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~  307 (428)
T 4b4t_K          248 GE--------------------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD  307 (428)
T ss_dssp             SH--------------------HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred             ch--------------------hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence            10                    01111112222335678999999885311                1223322211  1


Q ss_pred             CCCCcEEEEEeCChhhH----hh-cCCCceEeCCCC-CHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCc
Q 017364          215 FGIGSRIFITSRDKHLL----MA-HGVDEVYMHEHL-NYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       215 ~~~g~~iliTtR~~~~~----~~-~~~~~~~~l~~L-~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      ...+..||.||.....+    .. ...+..+.++++ +.++-..+|..+..... .+..+    ...+++.+.|+-
T Consensus       308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s  379 (428)
T 4b4t_K          308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS  379 (428)
T ss_dssp             SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred             CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence            12355566677654321    11 123456778655 55555666665553222 11111    456777777754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.39  E-value=3.1e-06  Score=75.11  Aligned_cols=51  Identities=24%  Similarity=0.344  Sum_probs=40.2

Q ss_pred             cCcccchhhHHHHHHHHhcCC------CC-eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           85 KELVGLDSRLEKLRFLINKGP------TD-VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++|.+..++.+...+....      .. ...+.|+|++|+|||++|+.+++.....
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~   74 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT   74 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence            358899999888888776431      11 3579999999999999999999987544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.37  E-value=5.1e-06  Score=83.08  Aligned_cols=145  Identities=10%  Similarity=0.078  Sum_probs=82.4

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc------cceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF------EASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      ..+|||+.+++.+...+.....  .-+.|+|++|+|||++|+.+++.+....      ...++..+.             
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~~--~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------  244 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------  244 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred             CCccCchHHHHHHHHHHhCCCC--CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence            5699999999999999976433  5588999999999999999999874321      122221111             


Q ss_pred             HHHHHHHhCCCCCCCcchh-hhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhh----
Q 017364          159 KQLISQLLNLPDSGVWNVY-DGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLLMA----  233 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~----  233 (373)
                         .....+       ... .....+......++.+|++|  ...+....+.+.+.  ....++|.+|........    
T Consensus       245 ---g~~~~G-------~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d  310 (758)
T 3pxi_A          245 ---GTKYRG-------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD  310 (758)
T ss_dssp             ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred             ---cccccc-------hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence               000000       111 11222333334677899999  22233333444433  234556666654431000    


Q ss_pred             ---cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          234 ---HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       234 ---~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                         ......+.+++++.++..+++....
T Consensus       311 ~al~rRf~~i~v~~p~~~~~~~il~~~~  338 (758)
T 3pxi_A          311 AALERRFQPIQVDQPSVDESIQILQGLR  338 (758)
T ss_dssp             SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred             HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence               0122568999999999999998654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=2.8e-06  Score=78.13  Aligned_cols=170  Identities=15%  Similarity=0.145  Sum_probs=94.3

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS  152 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~  152 (373)
                      ..+.|-++..+.|...+..           +-..++-|.++||+|+|||.||+.+++.....    ++......+.. ..
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~v  256 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMYI  256 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSCS
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhccc
Confidence            3577888877777664321           22335779999999999999999999976543    22222222111 11


Q ss_pred             C-HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCCC
Q 017364          153 G-LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDWF  215 (373)
Q Consensus       153 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~  215 (373)
                      + .....+.                     .+...-...+++|++|+++...                .+..++..+..+
T Consensus       257 Gese~~ir~---------------------lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~  315 (434)
T 4b4t_M          257 GEGAKLVRD---------------------AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF  315 (434)
T ss_dssp             SHHHHHHHH---------------------HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred             chHHHHHHH---------------------HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence            1 1111111                     1222224568999999985321                122333222211


Q ss_pred             --CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhCCCc
Q 017364          216 --GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSH-KPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       216 --~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  283 (373)
                        ..+..||.||.....+..     ...+..+.++..+.++-.++|+.+..... ...-+    ...|++.+.|+-
T Consensus       316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s  387 (434)
T 4b4t_M          316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN  387 (434)
T ss_dssp             CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred             CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence              234456656665543221     12345788999999998998876653221 11111    456777887754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.34  E-value=7.7e-07  Score=77.31  Aligned_cols=151  Identities=17%  Similarity=0.246  Sum_probs=82.7

Q ss_pred             cCcccchhhHHHHHHHHhc----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+..++.+...+..          +....+-+.|+|++|+|||+||+.+++.....|-.   + +.......   
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~---   83 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM---   83 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS---
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh---
Confidence            5689999887777766541          11112348899999999999999999876533211   1 11111000   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-----------------HHHHHhcCCCCC--
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----------------QLESLAGKHDWF--  215 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~l~~l~~~~~~~--  215 (373)
                                ..+..   .......   +.......+.+|+||+++...                 .+..++..+...  
T Consensus        84 ----------~~~~~---~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~  147 (268)
T 2r62_A           84 ----------FVGLG---ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS  147 (268)
T ss_dssp             ----------CSSSC---SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred             ----------hcchH---HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence                      00110   1111222   222223467899999996532                 122333332211  


Q ss_pred             -CCCcEEEEEeCChhhHh-h----cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          216 -GIGSRIFITSRDKHLLM-A----HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       216 -~~g~~iliTtR~~~~~~-~----~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                       .....||.||....... .    ......+.+++++.++..+++....
T Consensus       148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~  196 (268)
T 2r62_A          148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI  196 (268)
T ss_dssp             SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred             CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence             12245666666543211 1    1233567888999999999987765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.33  E-value=6.2e-07  Score=70.43  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..++|+|++|+|||||++.++..........+++
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~   70 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI   70 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence            6899999999999999999999876532224444

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.32  E-value=7.8e-06  Score=74.50  Aligned_cols=170  Identities=16%  Similarity=0.199  Sum_probs=93.9

Q ss_pred             CcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-ccC
Q 017364           86 ELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KSG  153 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~  153 (373)
                      .+.|-++..+.|...+..           +-.-++-|.++||+|+|||.||+.+++.....|    +..+...+.. ..+
T Consensus       183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~vG  258 (437)
T 4b4t_I          183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYLG  258 (437)
T ss_dssp             GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSSS
T ss_pred             ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccCc
Confidence            467788877777665431           222356799999999999999999999876432    2222221111 111


Q ss_pred             -HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--C
Q 017364          154 -LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--W  214 (373)
Q Consensus       154 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~  214 (373)
                       .....+                     ..+...-...+++|++|+++..                ..+..++....  .
T Consensus       259 esek~ir---------------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~  317 (437)
T 4b4t_I          259 DGPRLCR---------------------QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD  317 (437)
T ss_dssp             HHHHHHH---------------------HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHH---------------------HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence             111111                     1122223467899999988531                11223322211  1


Q ss_pred             CCCCcEEEEEeCChhhHhhc-----CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          215 FGIGSRIFITSRDKHLLMAH-----GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       215 ~~~g~~iliTtR~~~~~~~~-----~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      ...+..||.||...+.++..     ..+..+.++..+.++-.++|+.+........ +.  ..+.+++.+.|+-
T Consensus       318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~-dv--dl~~LA~~T~GfS  388 (437)
T 4b4t_I          318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSE-DV--NLETLVTTKDDLS  388 (437)
T ss_dssp             CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCS-CC--CHHHHHHHCCSCC
T ss_pred             CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCC-cC--CHHHHHHhCCCCC
Confidence            12345566666655433221     2335688888899999999987763322111 10  1456777777754

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.31  E-value=2.5e-06  Score=73.96  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=34.7

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|....++.+...+.........+.|+|++|+|||+||+.+++...
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            4589999888888766653222225688999999999999999988654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.30  E-value=6.2e-06  Score=72.90  Aligned_cols=49  Identities=20%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|+...++.+...+..-......|.|+|++|+|||++|+.+.+...
T Consensus         2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            3589999999888887764222235688999999999999999988643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.19  E-value=2.2e-05  Score=73.60  Aligned_cols=50  Identities=26%  Similarity=0.321  Sum_probs=38.1

Q ss_pred             ccCcccchhhHHHHHHH---HhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           84 LKELVGLDSRLEKLRFL---INKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~---l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...++|.+..++.+..+   +..+....+-+.++|++|+|||+||+.+++.+.
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            36799999887765544   334433346789999999999999999998875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.14  E-value=1.3e-05  Score=80.02  Aligned_cols=148  Identities=16%  Similarity=0.180  Sum_probs=82.8

Q ss_pred             cCcccchhhHHHHHHHHhcCC------CC-eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGP------TD-VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      ..++|.+..++.+...+....      .. ...+.++|++|+|||++|+.+++.........+.+ ++..........  
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~--  567 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS--  567 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence            568999998888887776321      11 23699999999999999999999874332233333 333222211110  


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCC-----CC------CCCCcEEEEE
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKH-----DW------FGIGSRIFIT  224 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~-----~~------~~~g~~iliT  224 (373)
                                        .......++.   ....+|+||+++..  .....+...+     ..      ...+.+||+|
T Consensus       568 ------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t  626 (758)
T 3pxi_A          568 ------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT  626 (758)
T ss_dssp             ---------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred             ------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence                              1111122222   23458999999642  2222222111     10      1235678888


Q ss_pred             eCCh-----------------hhHhhcCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          225 SRDK-----------------HLLMAHGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       225 tR~~-----------------~~~~~~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      |...                 .+.  ...+..+.+++|+.++...++....
T Consensus       627 tn~~~~~~~~~~~~~~~~f~p~l~--~Rl~~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          627 SNVGASEKDKVMGELKRAFRPEFI--NRIDEIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             ESSSTTCCHHHHHHHHHHSCHHHH--TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHhhCCHHHH--hhCCeEEecCCCCHHHHHHHHHHHH
Confidence            8731                 111  1234688999999999888876654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.10  E-value=6.3e-07  Score=69.93  Aligned_cols=48  Identities=13%  Similarity=0.102  Sum_probs=33.7

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      -.++|++..++.+...+..-......|.|+|++|+|||++|+.+.+..
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            458999998888888775321122458899999999999999987643

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.10  E-value=2.4e-05  Score=77.47  Aligned_cols=173  Identities=16%  Similarity=0.124  Sum_probs=96.6

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-cc
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KS  152 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~  152 (373)
                      ..+.|-++.++.|...+.-           +-..++-|.++||+|+|||+||+.+++....    .++..+...+.. ..
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~l~sk~~  279 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA  279 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHHHHSSCT
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHHhhcccc
Confidence            3467788777777765431           1123577999999999999999999986543    233322222111 10


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHHh---cCCCCCC
Q 017364          153 GLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESLA---GKHDWFG  216 (373)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l~---~~~~~~~  216 (373)
                      +                    .+...+...+.......+.+|+||+++...             .+..++   ..+.. .
T Consensus       280 g--------------------ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-~  338 (806)
T 3cf2_A          280 G--------------------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-R  338 (806)
T ss_dssp             T--------------------HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-G
T ss_pred             h--------------------HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-c
Confidence            0                    011112223344446778999999986421             122222   22211 1


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      .+..||.||...+....     ......+.++..+.++-.++++.+........   .-....+++.+.|+.-+
T Consensus       339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsga  409 (806)
T 3cf2_A          339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGA  409 (806)
T ss_dssp             GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCHH
T ss_pred             CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCHH
Confidence            23445556654432211     12456789999999999999987653321111   11156678888877543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.09  E-value=0.00011  Score=63.12  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             cCcccchhhHHHHHHHHhc--C--------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLINK--G--------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+.....+......  .        -.-.+-++|+|++|+|||||++.+++....   ..+.+. ......... 
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~-   90 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV-   90 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSCT-
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHHh-
Confidence            4688887665555443321  0        001123899999999999999999987642   122221 111110000 


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHH-HHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--C
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNM-IRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--F  215 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~  215 (373)
                                         ......+.. +.......+.++++||++...                .+..+...+..  .
T Consensus        91 -------------------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~  151 (254)
T 1ixz_A           91 -------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK  151 (254)
T ss_dssp             -------------------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred             -------------------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence                               000111111 222223456899999985321                12223222110  1


Q ss_pred             CCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          216 GIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       216 ~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      .....++.+|........     ......+.++..+.++-.+++....
T Consensus       152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~  199 (254)
T 1ixz_A          152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA  199 (254)
T ss_dssp             TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence            123345556665544321     1245678899999988888887665

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.08  E-value=6.7e-05  Score=65.37  Aligned_cols=173  Identities=16%  Similarity=0.141  Sum_probs=87.9

Q ss_pred             ccCcccchhhHHHHHHHHhc--C--------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           84 LKELVGLDSRLEKLRFLINK--G--------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~--~--------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ...++|.+...+.+......  .        -.-.+-++|+|++|+|||||++.++.....   ..+.+. ...+.....
T Consensus        39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~  114 (278)
T 1iy2_A           39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV  114 (278)
T ss_dssp             GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSTT
T ss_pred             HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHHh
Confidence            45688988776666554321  0        001123899999999999999999987652   222221 111110000


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhH-HHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCCCC-
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGM-NMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHDWF-  215 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~~~-  215 (373)
                                          ......+ ..+.......+.++++||++..                ..+..+...+... 
T Consensus       115 --------------------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~  174 (278)
T 1iy2_A          115 --------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE  174 (278)
T ss_dssp             --------------------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred             --------------------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence                                0000111 1122222345689999998532                1122332222111 


Q ss_pred             -CCCcEEEEEeCChhhHh-----hcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          216 -GIGSRIFITSRDKHLLM-----AHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       216 -~~g~~iliTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                       .....++.+|.......     .......+.++..+.++-.+++...+.......+   .....++..+.|+.
T Consensus       175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~  245 (278)
T 1iy2_A          175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFV  245 (278)
T ss_dssp             TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred             CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCC
Confidence             12234455666554322     1134567889999999888888766532111110   11344666666655

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.03  E-value=3.5e-05  Score=67.71  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.+.|+|++|+|||+||+.+++.+.
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356889999999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.02  E-value=0.00013  Score=68.57  Aligned_cols=170  Identities=18%  Similarity=0.178  Sum_probs=90.5

Q ss_pred             ccCcccchhhHHHHHHHHh---cC-------CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           84 LKELVGLDSRLEKLRFLIN---KG-------PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ...++|.+.....+.....   ..       ..-.+-+.|+|++|+|||+||+.++.....    .++..+...+.... 
T Consensus        30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~~-  104 (499)
T 2dhr_A           30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMF-  104 (499)
T ss_dssp             TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSSC-
T ss_pred             HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHhh-
Confidence            3568998887666655432   11       011234899999999999999999987642    22222222211110 


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh----CCCceEEEecccccH----------------HHHHHHhcCCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL----RHKKVLLVIDDVIEL----------------QQLESLAGKHD  213 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~----------------~~l~~l~~~~~  213 (373)
                                            .......+...+    ...+.++++|+++..                ..+..++..+.
T Consensus       105 ----------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld  162 (499)
T 2dhr_A          105 ----------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD  162 (499)
T ss_dssp             ----------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred             ----------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence                                  000111122222    234579999998532                12333332221


Q ss_pred             C--CCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          214 W--FGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       214 ~--~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      .  ...+..++.+|.....+..     ......+.++..+.++-.+++..++....... .  .....++..+.|+.
T Consensus       163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-d--v~l~~lA~~t~G~~  236 (499)
T 2dhr_A          163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV  236 (499)
T ss_dssp             GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-S--STTHHHHTTSCSCC
T ss_pred             ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-H--HHHHHHHHhcCCCC
Confidence            1  1223445556665544321     12345788999999999998876653211111 1  11445666777766

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.93  E-value=0.00012  Score=63.63  Aligned_cols=124  Identities=14%  Similarity=0.085  Sum_probs=67.4

Q ss_pred             EEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHH-HHhhCC
Q 017364          111 IGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMI-RSRLRH  189 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~  189 (373)
                      ++|+|++|+|||||++.++......   .+.+. ........ ....                   ...+..+ ...-..
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~~-~~~~-------------------~~~i~~vf~~a~~~  102 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNMY-VGES-------------------ERAVRQVFQRAKNS  102 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSST-THHH-------------------HHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhhh-hhHH-------------------HHHHHHHHHHHHhc
Confidence            9999999999999999999876532   22222 11111100 0000                   0011111 111134


Q ss_pred             CceEEEecccccHH-------------HHHHHhcCCC--CCCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhH
Q 017364          190 KKVLLVIDDVIELQ-------------QLESLAGKHD--WFGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDE  249 (373)
Q Consensus       190 ~~~LlvlDdv~~~~-------------~l~~l~~~~~--~~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~e  249 (373)
                      .+.++++|+++...             ....+...+.  .......++.+|........     ...+..+.++..+.++
T Consensus       103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~  182 (274)
T 2x8a_A          103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD  182 (274)
T ss_dssp             CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred             CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence            57889999886421             1122221111  01123445566766654322     1356778899999999


Q ss_pred             HHHHHHHhh
Q 017364          250 ALGLFCLKA  258 (373)
Q Consensus       250 a~~l~~~~~  258 (373)
                      -.++++...
T Consensus       183 r~~il~~~~  191 (274)
T 2x8a_A          183 RLAILKTIT  191 (274)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998765

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.93  E-value=1.7e-05  Score=66.41  Aligned_cols=32  Identities=22%  Similarity=0.108  Sum_probs=25.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+++|.|++|+|||||+..++.   .....++|+.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~   52 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD   52 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence            7899999999999999999998   2234455554

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.92  E-value=7.7e-06  Score=70.14  Aligned_cols=27  Identities=22%  Similarity=0.436  Sum_probs=23.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+.+.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~   58 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRPI   58 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            789999999999999999999865543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.91  E-value=1.6e-05  Score=67.44  Aligned_cols=27  Identities=19%  Similarity=0.404  Sum_probs=23.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|+|++|+|||||++.++..+.+.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~   58 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMDKV   58 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            789999999999999999999866543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.90  E-value=0.00016  Score=65.88  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..+.|+|++|+|||++|+.+++.+.
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            5689999999999999999998763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.88  E-value=6.9e-05  Score=74.93  Aligned_cols=48  Identities=23%  Similarity=0.272  Sum_probs=37.8

Q ss_pred             cCcccchhhHHHHHHHHhcCC-------CCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGP-------TDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..++|.+..++.+...+....       .....+.++|++|+|||++|+.+++.+
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence            468999998888877765321       112479999999999999999999877

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.85  E-value=7.7e-05  Score=62.91  Aligned_cols=27  Identities=22%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+.+.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~   61 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGELEPS   61 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence            789999999999999999999876544

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.85  E-value=0.00011  Score=70.35  Aligned_cols=52  Identities=23%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             cCcccchhhHHHHHHHHh----cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           85 KELVGLDSRLEKLRFLIN----KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ...+|-+...+.+...+.    ...-....++|+|++|+||||||+.++......|
T Consensus        81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~  136 (543)
T 3m6a_A           81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF  136 (543)
T ss_dssp             HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence            347787776666644332    1111346899999999999999999999876543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.84  E-value=2.7e-05  Score=70.11  Aligned_cols=110  Identities=16%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      .+++|.|++|+|||||++.++..+.+... .++.+.+..+.......         ....... ...........+...|
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~-~~~~~~~~~~~La~aL  193 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQRE-VHRDTLGFSEALRSAL  193 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEE-BTTTBSCHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeee-eccccCCHHHHHHHHh
Confidence            68999999999999999999998766533 33333221111000000         0000000 0001122344788888


Q ss_pred             CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364          188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL  231 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~  231 (373)
                      ...+-+|++|++.+.+.++.+....   ..|..+|+|+++.+..
T Consensus       194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred             hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence            8899999999998777665544332   1266799999988665

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.83  E-value=2.2e-05  Score=66.76  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-+.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            7899999999999999999987543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.80  E-value=5.4e-06  Score=66.69  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=18.4

Q ss_pred             EEEEEeccCCcchhHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVV  128 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~  128 (373)
                      .+++|+|++|+|||||++.+
T Consensus        10 ei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999953

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.80  E-value=2e-05  Score=67.82  Aligned_cols=26  Identities=27%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~p   76 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLEDF   76 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence            78999999999999999999875543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.80  E-value=7.7e-05  Score=64.22  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeec--hhhhcccCHHHHHHHHHHH-HhCCCCCCCcchhhhHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANV--REISKKSGLVFLQKQLISQ-LLNLPDSGVWNVYDGMNMIRS  185 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~  185 (373)
                      .+++|+|++|+|||||++.++..+.+.+...+++...  ....+...  .    +..+ ..+.      +.......+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--~----~v~q~~~gl------~~~~l~~~la~   93 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--S----IVNQREVGE------DTKSFADALRA   93 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--S----EEEEEEBTT------TBSCHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--e----eeeHHHhCC------CHHHHHHHHHH
Confidence            8999999999999999999998876552333333211  00000000  0    0000 0000      01123445666


Q ss_pred             hhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          186 RLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       186 ~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                      .+...+-++++|+..+.+....++...   ..|..|++|+++...
T Consensus        94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~  135 (261)
T 2eyu_A           94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA  135 (261)
T ss_dssp             HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred             HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence            666677899999986655544443321   236678999998764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.78  E-value=4.7e-05  Score=65.32  Aligned_cols=26  Identities=38%  Similarity=0.653  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-..+
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~p   67 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIKP   67 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999875443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.78  E-value=0.00042  Score=55.85  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.8

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++|+|++|+|||||++.++..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.75  E-value=3.4e-05  Score=64.84  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-+.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            7899999999999999999987544

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.75  E-value=4e-05  Score=64.92  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            78999999999999999999875443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.74  E-value=4e-05  Score=64.66  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=27.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .+++|.|++|+|||||++.++.........+.|+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~   57 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV   57 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            7899999999999999999998766544455554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.73  E-value=3.3e-05  Score=65.93  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+.+.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            789999999999999999999876654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.72  E-value=2.6e-05  Score=67.37  Aligned_cols=37  Identities=32%  Similarity=0.585  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.-+.+
T Consensus        27 L~~vsl~i~~G----e~~~liG~nGsGKSTLl~~l~Gl~~p   63 (266)
T 4g1u_C           27 INDVSLHIASG----EMVAIIGPNGAGKSTLLRLLTGYLSP   63 (266)
T ss_dssp             EEEEEEEEETT----CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            44444444455    78999999999999999999875543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.70  E-value=3.3e-05  Score=65.09  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.....
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            89999999999999999999986543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.69  E-value=0.00018  Score=72.83  Aligned_cols=50  Identities=24%  Similarity=0.351  Sum_probs=39.0

Q ss_pred             cCcccchhhHHHHHHHHhcCC------CC-eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           85 KELVGLDSRLEKLRFLINKGP------TD-VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|.+..++.+...+....      +. ...+.|+|++|+|||++|+.+++....
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            357999998888887775321      11 257999999999999999999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.67  E-value=9.9e-05  Score=63.52  Aligned_cols=26  Identities=38%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++... +.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~   56 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL-PY   56 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence            789999999999999999999866 44

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.67  E-value=7.8e-05  Score=66.93  Aligned_cols=37  Identities=32%  Similarity=0.537  Sum_probs=27.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.+..-..+
T Consensus        44 L~~vsl~i~~G----ei~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           44 LNNVSLHVPAG----QIYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             EEEEEEEECTT----CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEeeEEEEcCC----CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence            44444444445    78999999999999999999875443

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.66  E-value=8e-05  Score=64.32  Aligned_cols=25  Identities=36%  Similarity=0.538  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-+.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            7899999999999999999987544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.65  E-value=4.5e-05  Score=65.75  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~p   58 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEKP   58 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999875543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.62  E-value=0.00025  Score=61.19  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=26.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.-
T Consensus        36 l~~vsl~i~~G----e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           36 LRGLSLDVHPG----EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEEEECTT----CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHhCC
Confidence            33333334444    78999999999999999999985

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.59  E-value=3.1e-05  Score=67.14  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=27.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.-+.+
T Consensus        24 L~~isl~i~~G----e~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           24 LKGINMNIKRG----EVTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             EEEEEEEEETT----SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            33343334445    78999999999999999999875543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.58  E-value=5.1e-05  Score=65.70  Aligned_cols=26  Identities=27%  Similarity=0.517  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~~p   71 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLYQP   71 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999875543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.57  E-value=0.00011  Score=64.20  Aligned_cols=27  Identities=22%  Similarity=0.494  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+.+.
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~   91 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELEPS   91 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence            789999999999999999998865543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.57  E-value=0.00011  Score=65.81  Aligned_cols=26  Identities=38%  Similarity=0.629  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-..+
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            78999999999999999999975443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.55  E-value=6.1e-05  Score=68.04  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-..
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            7899999999999999999997543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.54  E-value=5.3e-05  Score=68.10  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-..
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCC
Confidence            7899999999999999999997544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.53  E-value=0.00014  Score=59.92  Aligned_cols=58  Identities=14%  Similarity=0.142  Sum_probs=39.3

Q ss_pred             cCcccch----hhHHHHHHHHhcCCCC--eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           85 KELVGLD----SRLEKLRFLINKGPTD--VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        85 ~~~vGR~----~~~~~l~~~l~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..|++..    ..++.+..++......  .+.+.|+|++|+|||+||+.+++........++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~   88 (202)
T 2w58_A           25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV   88 (202)
T ss_dssp             TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            4566543    3455556666543222  26789999999999999999999876654445554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.51  E-value=7.7e-05  Score=72.04  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccce------EEEeechhhhcccCHHHH--------------HHHHHHHHhCC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS------CFLANVREISKKSGLVFL--------------QKQLISQLLNL  168 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  168 (373)
                      .+++|.|++|+|||||++.++..+.+..+.+      .++...............              ...++..+ +.
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-~l  461 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-GI  461 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-TC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-CC
Confidence            6899999999999999999998665432222      121110000001111111              11222222 22


Q ss_pred             CCCCC-----cch-hhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCC
Q 017364          169 PDSGV-----WNV-YDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGV  236 (373)
Q Consensus       169 ~~~~~-----~~~-~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~  236 (373)
                      .....     -+. ....-.+.+.+...+-+|+||+.-      ....+..++..+.. ..|..||++|++...+... +
T Consensus       462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-a  539 (607)
T 3bk7_A          462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV-S  539 (607)
T ss_dssp             TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-C
T ss_pred             chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-C
Confidence            11111     111 222334666677788899999642      22333333322210 1255699999998876654 4


Q ss_pred             CceEeC
Q 017364          237 DEVYMH  242 (373)
Q Consensus       237 ~~~~~l  242 (373)
                      +.++.+
T Consensus       540 drv~vl  545 (607)
T 3bk7_A          540 DRLIVF  545 (607)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            555554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.49  E-value=7.7e-05  Score=66.91  Aligned_cols=26  Identities=35%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-..+
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCC
Confidence            78999999999999999999985443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.49  E-value=0.00022  Score=60.98  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+++|.|++|+|||||++.++.-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            78999999999999999999985

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.48  E-value=0.00016  Score=65.14  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-..
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            7899999999999999999997544

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.48  E-value=7.5e-05  Score=66.88  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-..+
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p   52 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVP   52 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCC
Confidence            78999999999999999999975543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.48  E-value=0.00022  Score=63.60  Aligned_cols=118  Identities=19%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG  172 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
                      .++.+...+..+    ..++|+|++|+|||||++.++..+.+. ...+.+...........     .+.. .+..     
T Consensus       160 ~l~~l~~~i~~g----~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~~~-----~~~i-~~~~-----  223 (330)
T 2pt7_A          160 AISAIKDGIAIG----KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHH-----KNYT-QLFF-----  223 (330)
T ss_dssp             HHHHHHHHHHHT----CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSSC-----SSEE-EEEC-----
T ss_pred             HHhhhhhhccCC----CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccccc-----hhEE-EEEe-----
Confidence            355566666666    679999999999999999999876554 34444432211100000     0000 0000     


Q ss_pred             CcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          173 VWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       173 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                       .........+...+...+-+|++|++.+.+.++.+. ...  ..+..+|+|+|....
T Consensus       224 -ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~~~  277 (330)
T 2pt7_A          224 -GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAGSS  277 (330)
T ss_dssp             -BTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECSSH
T ss_pred             -CCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcccHH
Confidence             011223445667777888899999987654444332 221  112237888887643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.00013  Score=70.35  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=23.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++..+.+
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            78999999999999999999875543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.44  E-value=0.00011  Score=66.53  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=23.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-..+
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence            78999999999999999999985543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.43  E-value=0.00015  Score=63.65  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=21.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +++.|+|++|+|||+||..++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            67889999999999999999886

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.43  E-value=0.00032  Score=63.69  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=62.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL  187 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  187 (373)
                      .+++|+|++|+|||||++.++..+.+. -..+.+......... ...       . .+....... .+.......+...+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~-------~-~~v~Q~~~g-~~~~~~~~~l~~~L  206 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHK-------K-SIVNQREVG-EDTKSFADALRAAL  206 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCS-------S-SEEEEEEBT-TTBSCSHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccC-------c-eEEEeeecC-CCHHHHHHHHHHHh
Confidence            789999999999999999999987654 233333321100000 000       0 000000000 01122345677777


Q ss_pred             CCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          188 RHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       188 ~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                      ...+-+|++|++.+.+.+..++...   ..|..++.|++....
T Consensus       207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~  246 (372)
T 2ewv_A          207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA  246 (372)
T ss_dssp             TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred             hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence            7788899999997666554443322   236668888887653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.39  E-value=3.5e-05  Score=67.81  Aligned_cols=26  Identities=23%  Similarity=0.584  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|+|++|+|||||++.++.-+.+
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCCC
Confidence            78999999999999999999875443

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.39  E-value=0.00034  Score=62.82  Aligned_cols=25  Identities=40%  Similarity=0.578  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-..
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            7899999999999999999997544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.39  E-value=0.00031  Score=57.86  Aligned_cols=46  Identities=28%  Similarity=0.320  Sum_probs=34.5

Q ss_pred             chhhHHHHHHHHhcC-CCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           90 LDSRLEKLRFLINKG-PTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        90 R~~~~~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      |++.++.+...+... .....+++|.|++|+|||||++.+...+...
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~   49 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            455666666666532 2345899999999999999999999877543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.38  E-value=0.00016  Score=69.01  Aligned_cols=132  Identities=14%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccce------EEEeechhhhcccCHHHHHHHH----------HHHHhCCCCC-
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS------CFLANVREISKKSGLVFLQKQL----------ISQLLNLPDS-  171 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-  171 (373)
                      .+++|.|++|+|||||++.++....+..+.+      .++..-................          ...++..-.. 
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~  392 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII  392 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence            6899999999999999999998665432222      1221100000111121111111          1111111100 


Q ss_pred             --------CCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCC
Q 017364          172 --------GVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD  237 (373)
Q Consensus       172 --------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~  237 (373)
                              ..+.-....-.+.+.+...+-+|+||+.-      ....+..++..+.. ..|..||++|++...+..+ ++
T Consensus       393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-~d  470 (538)
T 1yqt_A          393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV-SD  470 (538)
T ss_dssp             GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-CS
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CC
Confidence                    00111122334566677788899999642      23333333322210 1255699999998876654 45


Q ss_pred             ceEeC
Q 017364          238 EVYMH  242 (373)
Q Consensus       238 ~~~~l  242 (373)
                      .++.+
T Consensus       471 rv~vl  475 (538)
T 1yqt_A          471 RLMVF  475 (538)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55555

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.37  E-value=0.00044  Score=61.43  Aligned_cols=36  Identities=19%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ...+++|+|++|+||||+++.++..+.+....+.+.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~  163 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA  163 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence            458999999999999999999999877654444443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.36  E-value=0.00023  Score=63.82  Aligned_cols=35  Identities=29%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .++.|.|++|+|||||+..++.........++|+.
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId   96 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID   96 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            89999999999999999999988765555566664

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.36  E-value=0.0002  Score=59.38  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.|...+........+++|.|++|+|||||++.+...+..
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            344444444322234589999999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.36  E-value=0.00026  Score=67.43  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=23.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++..+.+
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p   51 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIP   51 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            89999999999999999999875544

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.35  E-value=0.00012  Score=65.40  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=39.9

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++|++..++.+...+..+    ..+.|+|++|+|||+||+.+++.+...
T Consensus        27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~   73 (331)
T 2r44_A           27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD   73 (331)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred             cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            46999999999988888766    458999999999999999999876543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.35  E-value=0.00016  Score=68.87  Aligned_cols=26  Identities=27%  Similarity=0.523  Sum_probs=23.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|+|++|+|||||++.++..+.+
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~p   73 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLIP   73 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999999976543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.30  E-value=0.00025  Score=68.50  Aligned_cols=39  Identities=26%  Similarity=0.531  Sum_probs=29.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+.-.+.++    ..++|+|++|+|||||++.++.-+.+.
T Consensus       358 ~l~~i~l~i~~G----~~~~ivG~sGsGKSTll~~l~g~~~p~  396 (582)
T 3b5x_A          358 ALSHVSFSIPQG----KTVALVGRSGSGKSTIANLFTRFYDVD  396 (582)
T ss_pred             ccccceEEECCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            344444444455    789999999999999999999765443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.29  E-value=0.00028  Score=63.77  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-..
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            7899999999999999999997544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.28  E-value=0.00018  Score=56.81  Aligned_cols=24  Identities=42%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+++|.|++|+|||||++.++..+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            899999999999999999999987

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.27  E-value=0.00048  Score=55.90  Aligned_cols=117  Identities=15%  Similarity=0.037  Sum_probs=59.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHH--hCC--CCCC------Ccchhh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQL--LNL--PDSG------VWNVYD  178 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~------~~~~~~  178 (373)
                      ..|.|++.+|.||||+|-..+-+...+...+.++.-.... ...+...+...+--.+  .+.  ....      ......
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~  107 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA  107 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence            4577888888999999999988866665555555322110 1111112222210000  000  0000      001122


Q ss_pred             hHHHHHHhhC-CCceEEEecccc--------cHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364          179 GMNMIRSRLR-HKKVLLVIDDVI--------ELQQLESLAGKHDWFGIGSRIFITSRDKH  229 (373)
Q Consensus       179 ~~~~l~~~l~-~~~~LlvlDdv~--------~~~~l~~l~~~~~~~~~g~~iliTtR~~~  229 (373)
                      .....++.+. ++--|||||++-        +.+.+-.++...+   .+..||+|+|+..
T Consensus       108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp---~~~~vIlTGr~ap  164 (196)
T 1g5t_A          108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP---GHQTVIITGRGCH  164 (196)
T ss_dssp             HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC---TTCEEEEECSSCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc---CCCEEEEECCCCc
Confidence            2334455554 345699999873        2333434443332   3567999999874

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.26  E-value=0.0013  Score=54.88  Aligned_cols=109  Identities=17%  Similarity=0.008  Sum_probs=57.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCC--CCCCcchhhhHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLP--DSGVWNVYDGMNMIRSR  186 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~  186 (373)
                      .++.|+|+.|+||||++..++.+...+...+..+....... ..      .++.+.+ +..  ........+....+.+.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~------~~i~srl-G~~~~~~~~~~~~~i~~~i~~~   84 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI------RNIQSRT-GTSLPSVEVESAPEILNYIMSN   84 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC------SSCCCCC-CCSSCCEEESSTHHHHHHHHST
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH------HHHHHhc-CCCccccccCCHHHHHHHHHHH
Confidence            78999999999999999999988766544444442111000 00      0111111 111  00112223333444443


Q ss_pred             hCC-CceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 017364          187 LRH-KKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDK  228 (373)
Q Consensus       187 l~~-~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~  228 (373)
                      +.+ +.-+|++|.+..  .+.++.+.....   .|..||+|.++.
T Consensus        85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~  126 (223)
T 2b8t_A           85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK  126 (223)
T ss_dssp             TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred             hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence            333 345999998743  233332221111   167799999854

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.22  E-value=0.0033  Score=54.99  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=24.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..+++|+|++|+||||++..++..+..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            479999999999999999999998774

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.00058  Score=65.86  Aligned_cols=133  Identities=14%  Similarity=0.058  Sum_probs=67.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccc------eEEEeechhhhcccCH--------------HHHHHHHHHHHhCC
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEA------SCFLANVREISKKSGL--------------VFLQKQLISQLLNL  168 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  168 (373)
                      .+++|.|++|+|||||++.++....+..+.      +.++............              ......++..+.-.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            468999999999999999999865543221      1111100000000000              11122222222111


Q ss_pred             -----CCCCCcchhhhHHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCC
Q 017364          169 -----PDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVD  237 (373)
Q Consensus       169 -----~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~  237 (373)
                           .....+.-....-.+.+.+..++-+|+||+.-      ....+..++..+.. ..|..||++||+...+..+ ++
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-~~g~tviivtHdl~~~~~~-aD  536 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFIMATYL-AD  536 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-CS
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CC
Confidence                 11111122222345666777888899999642      22223233222110 1256699999998877655 55


Q ss_pred             ceEeCC
Q 017364          238 EVYMHE  243 (373)
Q Consensus       238 ~~~~l~  243 (373)
                      .++.+.
T Consensus       537 rvivl~  542 (608)
T 3j16_B          537 KVIVFE  542 (608)
T ss_dssp             EEEECE
T ss_pred             EEEEEe
Confidence            565554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.20  E-value=0.00026  Score=68.38  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++..+.+
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~p  143 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLIP  143 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCCC
Confidence            78999999999999999999875543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.20  E-value=0.00052  Score=62.39  Aligned_cols=35  Identities=37%  Similarity=0.660  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.-.
T Consensus        37 L~~vsl~i~~G----e~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           37 LENISFSISPG----QRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEEEECTT----CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             eeceeEEEcCC----CEEEEECCCCChHHHHHHHHhCCC
Confidence            44444334445    789999999999999999998743

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.18  E-value=0.00052  Score=65.43  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .+++|.|++|+|||||++.++.........++++
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~  315 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACANKERAILF  315 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            7899999999999999999998776543333444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.17  E-value=0.00081  Score=66.65  Aligned_cols=173  Identities=14%  Similarity=0.161  Sum_probs=77.0

Q ss_pred             cCcccchhhHHHHHHHHhc-----------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccC
Q 017364           85 KELVGLDSRLEKLRFLINK-----------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~  153 (373)
                      ....|.++..+.+...+.-           +...++-+.++||+|+|||.||+.+++.....    ++.....       
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~~~-------  545 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGP-------  545 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECCHH-------
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEeccc-------
Confidence            3456777777776665431           11224568899999999999999999865432    2221111       


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCCC--
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDWF--  215 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~~--  215 (373)
                            .++....+.      +.......+...-...+++|+||+++..-                .+..|+..+.-.  
T Consensus       546 ------~l~s~~vGe------se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~  613 (806)
T 3cf2_A          546 ------ELLTMWFGE------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST  613 (806)
T ss_dssp             ------HHHTTTCSS------CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred             ------hhhccccch------HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence                  111111111      11222223333335678999999986421                123333222111  


Q ss_pred             CCCcEEEEEeCChhh-----HhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCc
Q 017364          216 GIGSRIFITSRDKHL-----LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLP  283 (373)
Q Consensus       216 ~~g~~iliTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  283 (373)
                      ..+.-||.||.....     ....+.+..+.++..+.++-.++|+.+....... ...  ....+++.+.|+-
T Consensus       614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~--dl~~la~~t~g~S  683 (806)
T 3cf2_A          614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDV--DLEFLAKMTNGFS  683 (806)
T ss_dssp             SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------
T ss_pred             CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCC--CHHHHHHhCCCCC
Confidence            123333334443322     1111345678888888888888886665322111 111  1455666666653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.17  E-value=0.0003  Score=66.91  Aligned_cols=27  Identities=48%  Similarity=0.785  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++....+.
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~  321 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITAD  321 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            589999999999999999999866544

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=97.17  E-value=0.015  Score=51.93  Aligned_cols=155  Identities=9%  Similarity=-0.030  Sum_probs=92.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc-cccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHH-
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH-EFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRS-  185 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-  185 (373)
                      .++..++|+.|.||++.+..+...+.. .|.....+. .   ........+..                      .+.. 
T Consensus        18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~----------------------~~~~~   71 (343)
T 1jr3_D           18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFS----------------------LCQAM   71 (343)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHH----------------------HHHHH
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHH----------------------HhcCc
Confidence            478999999999999999999987643 232211111 1   11122222221                      1111 


Q ss_pred             hhCCCceEEEeccccc---HHHHHHHhcCCCCCCCCcEEEEEeCC-------hhhHhhc-CCCceEeCCCCCHhHHHHHH
Q 017364          186 RLRHKKVLLVIDDVIE---LQQLESLAGKHDWFGIGSRIFITSRD-------KHLLMAH-GVDEVYMHEHLNYDEALGLF  254 (373)
Q Consensus       186 ~l~~~~~LlvlDdv~~---~~~l~~l~~~~~~~~~g~~iliTtR~-------~~~~~~~-~~~~~~~l~~L~~~ea~~l~  254 (373)
                      -+.+.+-++|+|+++.   ....+.+...+....+++.+|+++.+       ..+...+ .....++..+++.++...++
T Consensus        72 plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l  151 (343)
T 1jr3_D           72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV  151 (343)
T ss_dssp             HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence            1234566888998754   23344444333322346767766643       1233332 23467899999999999888


Q ss_pred             HHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          255 CLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ...+-....  ....+.+..+++.++|.+..+....
T Consensus       152 ~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~el  185 (343)
T 1jr3_D          152 AARAKQLNL--ELDDAANQVLCYCYEGNLLALAQAL  185 (343)
T ss_dssp             HHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHHHH
T ss_pred             HHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHHHH
Confidence            777632221  1335668889999999988776543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.16  E-value=0.0025  Score=56.34  Aligned_cols=34  Identities=18%  Similarity=0.139  Sum_probs=27.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .++.|.|++|+|||||+..++.........++|+
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~  102 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH  102 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            7899999999999999999998765443455555

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.14  E-value=0.0021  Score=55.81  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||+..++..+..
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            78999999999999999999986653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.10  E-value=0.00031  Score=59.90  Aligned_cols=40  Identities=30%  Similarity=0.493  Sum_probs=23.9

Q ss_pred             cchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           89 GLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        89 GR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      |....++.+...+..+    .+++|.|++|+|||||++.++..+
T Consensus        10 ~~~~~l~~isl~i~~g----~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP----FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -------------CCS----EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC----EEEEEECCCCCCHHHHHHHHHHHh
Confidence            3344455665545444    799999999999999999998865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.09  E-value=0.00075  Score=57.15  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+++|.|++|+|||||+..++...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            789999999999999999999863

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.07  E-value=0.00048  Score=62.42  Aligned_cols=48  Identities=23%  Similarity=0.240  Sum_probs=36.4

Q ss_pred             CcccchhhHHHHHHHHh-------------cCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           86 ELVGLDSRLEKLRFLIN-------------KGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++|.+..++.+...+.             ........+.|+|++|+|||++|+.+++...
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            47888888888877772             1111235689999999999999999998763

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.06  E-value=0.00031  Score=66.09  Aligned_cols=45  Identities=20%  Similarity=0.161  Sum_probs=39.1

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.++|++..++.+...+..+    ..|.|+|++|+|||+||+.++....
T Consensus        22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence            46999999999988888776    5689999999999999999988653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.05  E-value=0.007  Score=56.29  Aligned_cols=53  Identities=11%  Similarity=0.003  Sum_probs=35.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQLISQLL  166 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (373)
                      ..++.|.|++|+|||||+..++...... ...++|+.      .......+...++....
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~  253 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEA  253 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHc
Confidence            3789999999999999999999876543 33445543      22334445555544433

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.05  E-value=0.00064  Score=61.06  Aligned_cols=35  Identities=29%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .++.|+|++|+||||||..++.........++|+.
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            78999999999999999999987765555566664

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.05  E-value=0.00079  Score=58.77  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          104 GPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       104 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ....+.+|+|.|++|+|||||++.+...+..
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3445689999999999999999999987764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.02  E-value=0.0025  Score=57.08  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=26.8

Q ss_pred             HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           97 LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        97 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +..+|..+-....++.|+|++|+||||||..++...
T Consensus       111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334443222234899999999999999999999874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.00032  Score=56.40  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|.|+|++|+||||+++.+...+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6799999999999999999998764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.01  E-value=0.00041  Score=56.99  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..|+|+|++|+||||+++.++..+.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            6899999999999999999998763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.98  E-value=0.00037  Score=56.27  Aligned_cols=25  Identities=12%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+|||||++.+.....
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999998754

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.98  E-value=0.0028  Score=56.11  Aligned_cols=36  Identities=17%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ...+++|+|++|+||||++..++..+......+.++
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA  139 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            357999999999999999999999887654444444

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.96  E-value=0.0012  Score=54.15  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++..+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999999876

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.95  E-value=0.0012  Score=57.71  Aligned_cols=34  Identities=9%  Similarity=0.065  Sum_probs=27.3

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhcc--ccceEEEe
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHE--FEASCFLA  143 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~  143 (373)
                      ++.|.|++|+|||||+.+++......  ...++|+.
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId   65 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD   65 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            78999999999999999998876654  34556654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.95  E-value=0.0014  Score=57.58  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ...+++|+|++|+||||++..++..+......+.++
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv  138 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA  138 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence            357999999999999999999999887654444443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.95  E-value=0.00035  Score=58.41  Aligned_cols=35  Identities=29%  Similarity=0.301  Sum_probs=23.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++.+...+..+    .+++|+|++|+|||||++.++...
T Consensus        13 l~~isl~i~~G----~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           13 GLVPRGSMNNI----YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---------CC----CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccCCceecCCC----CEEEEECCCCCCHHHHHHHHHhhC
Confidence            44454445555    789999999999999999999866

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.94  E-value=0.0034  Score=57.71  Aligned_cols=35  Identities=23%  Similarity=0.171  Sum_probs=28.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+++++|++|+||||++..++..+......+..+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv  131 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV  131 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999998876654444433

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.93  E-value=0.00082  Score=54.47  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=27.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+++|.|++|+||||+++.++..+......+.++
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            47899999999999999999999876543333333

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.92  E-value=0.00033  Score=56.77  Aligned_cols=28  Identities=36%  Similarity=0.553  Sum_probs=23.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      +.|+|+||+|+|||||++.+.......|
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~   29 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence            4588999999999999999988654433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.91  E-value=0.00087  Score=58.91  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=28.1

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ...+++|+|++|+|||||++.++..+.+....+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l  135 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF  135 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999987765433333

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.91  E-value=0.00051  Score=54.77  Aligned_cols=25  Identities=20%  Similarity=0.102  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|+|.|++|+||||+++.+...+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.90  E-value=0.0013  Score=57.91  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHhcCCCC-eEEEEEeccCCcchhHHHHHHHHHHh-ccccceEEE
Q 017364           92 SRLEKLRFLINKGPTD-VRMIGICGMGGIGKTTLARVVYDLIS-HEFEASCFL  142 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~  142 (373)
                      ..++.+..++...... ...+.|+|++|+|||+||..+++... .....+.++
T Consensus       135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~  187 (308)
T 2qgz_A          135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL  187 (308)
T ss_dssp             HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence            3455555666542221 36789999999999999999999876 544344444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.89  E-value=0.0013  Score=66.32  Aligned_cols=22  Identities=50%  Similarity=0.901  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+++|+|++|+|||||++.++.
T Consensus       462 e~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            7899999999999999999984

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.89  E-value=0.0044  Score=55.06  Aligned_cols=34  Identities=15%  Similarity=0.099  Sum_probs=27.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .++.|.|.+|+|||||+..++.........+.|+
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f   80 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF   80 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            7899999999999999999998765543444554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.88  E-value=0.012  Score=51.44  Aligned_cols=35  Identities=23%  Similarity=0.183  Sum_probs=28.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+++++|++|+||||++..++..+......+.++
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~  132 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV  132 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            57899999999999999999998877654444444

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.87  E-value=0.00057  Score=55.61  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=21.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+++|.|++|+|||||++.++..
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            78999999999999999999875

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.87  E-value=0.0054  Score=57.23  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=27.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~  142 (373)
                      .++.|.|++|+|||||+..++..+....+ .+.|+
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~  238 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF  238 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            78999999999999999999988765323 45554

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.85  E-value=0.00046  Score=55.18  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|+|+|++|+|||||++.++..+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5699999999999999999988754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.85  E-value=0.00049  Score=57.02  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..+++|+||+|+|||||++.++..+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            378999999999999999999987643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.85  E-value=0.00064  Score=65.65  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|+|++|+|||||++.+...+.+
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccC
Confidence            78999999999999999998875443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.85  E-value=0.0012  Score=58.37  Aligned_cols=47  Identities=30%  Similarity=0.429  Sum_probs=35.4

Q ss_pred             cccchhhHHHHHHHHhcC--CCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           87 LVGLDSRLEKLRFLINKG--PTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|....+..+...+...  ...+.+++|.|++|+|||||++.+...+.
T Consensus        69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            556566666666555443  33467999999999999999999988765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.84  E-value=0.001  Score=56.47  Aligned_cols=40  Identities=18%  Similarity=-0.024  Sum_probs=28.2

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+..+...+......+..|+|.|++|+||||+++.+.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444443333222345789999999999999999998765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.83  E-value=0.0011  Score=54.91  Aligned_cols=26  Identities=27%  Similarity=0.148  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++.. .+.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~   48 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQ   48 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence            78999999999999999999987 544

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.83  E-value=0.0011  Score=53.77  Aligned_cols=27  Identities=22%  Similarity=0.508  Sum_probs=23.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..|+|.|++|+||||+++.+...+...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            478999999999999999999987643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.83  E-value=0.00061  Score=66.00  Aligned_cols=27  Identities=22%  Similarity=0.470  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++|+|++|+|||||++.++..+.+.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~p~  408 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYDVD  408 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence            789999999999999999998765443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.83  E-value=0.0011  Score=58.30  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASC  140 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~  140 (373)
                      ..+++|+|++|+||||+++.++..+.+....+.
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~  132 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL  132 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            479999999999999999999998775533333

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.82  E-value=0.00081  Score=55.68  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..+++|.|++|+|||||++.+...+..
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            378999999999999999999987653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.82  E-value=0.00061  Score=56.07  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+++|.|++|+|||||++.++...
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            689999999999999999998864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.81  E-value=0.00072  Score=60.73  Aligned_cols=47  Identities=21%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|.+...+.+...+.....  .-+.|+|++|+|||+||+.+++...
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~~--~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPGI--GGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGG--CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             hhccChHHHHHHHHHHhhCCCC--ceEEEECCCCccHHHHHHHHHHhCc
Confidence            4689998866655444332211  3389999999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.80  E-value=0.0007  Score=55.63  Aligned_cols=24  Identities=42%  Similarity=0.537  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+++|.|++|+|||||++.++..+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh
Confidence            789999999999999999998876

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.79  E-value=0.001  Score=64.58  Aligned_cols=49  Identities=22%  Similarity=0.456  Sum_probs=42.1

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .-..++|.+..++.+...+..+    ..++|+|++|+||||||+.++..+...
T Consensus        39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            3356899999999999999887    579999999999999999999976544

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.79  E-value=0.001  Score=58.36  Aligned_cols=46  Identities=15%  Similarity=0.156  Sum_probs=34.1

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc-ceEEE
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE-ASCFL  142 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~  142 (373)
                      .++.+..-+..+    .+++|.|++|+|||||++.++..+....+ .+.|+
T Consensus        24 ~Ld~i~~~l~~G----~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~   70 (296)
T 1cr0_A           24 GINDKTLGARGG----EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA   70 (296)
T ss_dssp             THHHHHCSBCTT----CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             HHHHHhcCCCCC----eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            356665445555    78999999999999999999998765533 44444

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.79  E-value=0.0011  Score=53.13  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+++|+|++|+||||+++.+...+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            3789999999999999999998765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.78  E-value=0.00071  Score=55.95  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=22.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.+...+.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            7899999999999999999998763

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.78  E-value=0.00074  Score=54.61  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.|+|+|++|+||||+++.++..+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6789999999999999999998763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.77  E-value=0.00078  Score=54.11  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+|.|.|++|+||||+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999987

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.77  E-value=0.0013  Score=59.13  Aligned_cols=35  Identities=31%  Similarity=0.403  Sum_probs=29.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .++.|.|++|+||||||..++.........++|+.
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid   98 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   98 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            78999999999999999999987665545566664

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.76  E-value=0.0015  Score=58.89  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .++.|.|++|+||||||..++.........++|+.
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~  109 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID  109 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            78999999999999999999987655545666664

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.76  E-value=0.0021  Score=57.14  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.|+|++|+||||||..++....
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~  132 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQ  132 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHh
Confidence            7899999999999999999998753

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=96.76  E-value=0.02  Score=51.77  Aligned_cols=49  Identities=27%  Similarity=0.354  Sum_probs=34.3

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|....+..+...+..-......|.|+|++|+||+++|+.+.....
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~  177 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG  177 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence            4588887777766665542111124478999999999999998876543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.75  E-value=0.00053  Score=58.09  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p   50 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            68999999999999999999986543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.73  E-value=0.00068  Score=55.64  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.++|+|++|+|||||++.+...+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            6799999999999999999998664

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.72  E-value=0.00066  Score=55.86  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+|+|.|++|+||||+++.+...+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.72  E-value=0.00089  Score=54.38  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+++|.|++|+|||||++.++.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999986

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.69  E-value=0.0015  Score=51.89  Aligned_cols=28  Identities=25%  Similarity=0.239  Sum_probs=25.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++++|.|+.|+|||||+..++..+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            4789999999999999999999987655

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.68  E-value=0.0025  Score=59.39  Aligned_cols=34  Identities=21%  Similarity=0.257  Sum_probs=27.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ..+++|+|++|+|||||++.++..+......+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l  326 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML  326 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence            5799999999999999999999987755444443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.68  E-value=0.0012  Score=53.71  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=22.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+|.|.|++|+||||+++.+...+
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            3789999999999999999998866

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.67  E-value=0.00089  Score=54.66  Aligned_cols=26  Identities=12%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++++|+||+|+|||||++.+.....
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            37899999999999999999998654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.67  E-value=0.00078  Score=53.75  Aligned_cols=20  Identities=40%  Similarity=0.723  Sum_probs=18.7

Q ss_pred             EEEEEeccCCcchhHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVV  128 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~  128 (373)
                      .+|+|.|++|+||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.67  E-value=0.0016  Score=58.47  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASC  140 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~  140 (373)
                      ..+++|+|++|+||||+++.++..+.+....+.
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~  189 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL  189 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence            579999999999999999999998765533333

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.66  E-value=0.0011  Score=56.72  Aligned_cols=25  Identities=24%  Similarity=0.125  Sum_probs=22.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+||||||+.++....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            4789999999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.65  E-value=0.0004  Score=57.70  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++..+.+
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~p   61 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLKP   61 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            67999999999999999999876543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.65  E-value=0.0011  Score=56.37  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=31.5

Q ss_pred             hhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           91 DSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        91 ~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...++.+...+..   +    ..|+|+|++|+||||+++.++..+.
T Consensus        32 ~~~l~~~~~~i~~~l~g----~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNG----RSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             CHHHHHHHHTTHHHHTT----CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhhhhhcCC----CEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3457777666665   5    6799999999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.64  E-value=0.00068  Score=57.62  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-+.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            8899999999999999999987544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.63  E-value=0.0011  Score=56.51  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +.+++|.|++|+|||||++.++..+
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3789999999999999999999765

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.62  E-value=0.0014  Score=57.44  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.+...+.++    .+++|+|++|+|||||++.+...+
T Consensus       115 vL~~vsl~i~~G----e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKK----NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTC----SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCC----CEEEEECCCCCcHHHHHHHHhhhc
Confidence            455555445555    789999999999999999999876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.62  E-value=0.00062  Score=58.40  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=27.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++.-+.+
T Consensus        23 l~~vsl~i~~G----e~~~liG~nGsGKSTLlk~l~Gl~~p   59 (257)
T 1g6h_A           23 LDGVSISVNKG----DVTLIIGPNGSGKSTLINVITGFLKA   59 (257)
T ss_dssp             EEEECCEEETT----CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EeeeEEEEeCC----CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            33344334445    78999999999999999999875543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.61  E-value=0.0014  Score=57.81  Aligned_cols=28  Identities=36%  Similarity=0.544  Sum_probs=25.1

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...+++|.|++|+|||||++.+...+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3589999999999999999999988765

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.61  E-value=0.0032  Score=55.49  Aligned_cols=27  Identities=41%  Similarity=0.511  Sum_probs=24.3

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...+++|.|++|+|||||++.+...+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            348999999999999999999998776

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.61  E-value=0.01  Score=54.69  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=27.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      +.+|.++|++|+||||++..++..+......+..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            6899999999999999999999887665433333

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.60  E-value=0.0006  Score=65.79  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|+|++|+|||||++.+...+.+
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~~p  393 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFYDV  393 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            78999999999999999998875443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.59  E-value=0.0013  Score=53.37  Aligned_cols=26  Identities=23%  Similarity=0.537  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..|+|.|++|+||||+++.+...+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            57999999999999999999987753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.59  E-value=0.0012  Score=54.38  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+||||+++.+.....
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~~   31 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDPS   31 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhC
Confidence            6899999999999999999988663

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.59  E-value=0.0011  Score=55.38  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++....
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            7899999999999999999998765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.57  E-value=0.00061  Score=58.04  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=22.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~p   61 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYIP   61 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999875443

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.56  E-value=0.0087  Score=55.52  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=27.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..++.|.|.+|+||||||..++.........+.|+
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f  231 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH  231 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence            37899999999999999999998765443344554

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.55  E-value=0.0015  Score=53.06  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+|+|.|++|+||||+++.++..+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998765

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.55  E-value=0.0015  Score=55.45  Aligned_cols=35  Identities=20%  Similarity=0.164  Sum_probs=27.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .++.|.|++|+|||||+..++.........++|+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            78999999999999999998877654444555553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.55  E-value=0.0014  Score=54.94  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+|+|+|++|+||||+++.+...+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.54  E-value=0.0017  Score=52.45  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=22.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..|+|.|++|+||||+++.++..+
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            679999999999999999998765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.54  E-value=0.003  Score=55.08  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+.++.|.|++|+||||+++.+...+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.53  E-value=0.0012  Score=53.59  Aligned_cols=25  Identities=32%  Similarity=0.513  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+|||||++.++..+.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4689999999999999999998775

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.53  E-value=0.0097  Score=48.64  Aligned_cols=23  Identities=26%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++.|+|++|+|||++|......
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999776544

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.53  E-value=0.0011  Score=53.37  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +.|+|+|++|+||||+++.++..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHh
Confidence            678999999999999999998765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.53  E-value=0.0014  Score=52.49  Aligned_cols=24  Identities=38%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .|+|.|++|+||||+++.++..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.53  E-value=0.0015  Score=51.91  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++|+|.|++|+||||+++.++..+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999988754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.53  E-value=0.00077  Score=58.48  Aligned_cols=37  Identities=32%  Similarity=0.491  Sum_probs=28.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    .+++|.|++|+|||||++.++..+.+
T Consensus        37 L~~isl~i~~G----e~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           37 LKKISWQIAKG----DKWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             EEEEEEEEETT----CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEeeeEEEcCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            44444444455    78999999999999999999976543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.52  E-value=0.0021  Score=52.40  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+|+|.|++|+||||+++.++..+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.52  E-value=0.0011  Score=54.52  Aligned_cols=25  Identities=32%  Similarity=0.574  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+|||||++.+.....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            7899999999999999999988763

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.51  E-value=0.0028  Score=54.13  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=23.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.++.|.|++|+||||+++.+...+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999999988654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.51  E-value=0.0019  Score=53.68  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+++|.|.|++|+||||.|+.++..+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346899999999999999999998865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.50  E-value=0.0028  Score=51.73  Aligned_cols=40  Identities=18%  Similarity=0.309  Sum_probs=29.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      -+..+..++..- .....+.|+||+|+||||+|..+++.+.
T Consensus        44 f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           44 FLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            355666666532 2224689999999999999999998774

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.50  E-value=0.0016  Score=58.38  Aligned_cols=27  Identities=22%  Similarity=0.086  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +.++|+|++|+|||||++.++..+...
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~  201 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAYN  201 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhhc
Confidence            789999999999999999998876543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.49  E-value=0.0085  Score=52.38  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=28.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+++|+|++|+||||++..++..+......+.++
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~  132 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV  132 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            47899999999999999999999877654444443

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.49  E-value=0.0045  Score=57.22  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASC  140 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~  140 (373)
                      +.++|+|++|+|||||+..++......+..++
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            56899999999999999999987665444333

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.48  E-value=0.011  Score=55.81  Aligned_cols=35  Identities=11%  Similarity=-0.043  Sum_probs=28.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~  142 (373)
                      ..++.|.|++|+|||||+..++...... ...+.|+
T Consensus       242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~  277 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA  277 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred             CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence            3789999999999999999999887654 3345555

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.48  E-value=0.0025  Score=56.97  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+++|.|++|+|||||++.+...+.+....+.+.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~   89 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL   89 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence            38999999999999999999998776544444433

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.48  E-value=0.0024  Score=52.65  Aligned_cols=27  Identities=30%  Similarity=0.491  Sum_probs=24.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..|+|.|++|+||||+++.+...+...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            689999999999999999999987643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.48  E-value=0.0025  Score=52.78  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+|+|.|+.|+||||+++.+...+...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999887644

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.48  E-value=0.0014  Score=53.83  Aligned_cols=22  Identities=36%  Similarity=0.628  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+|+|+|++|+||||+++.++.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999987

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.47  E-value=0.0018  Score=53.17  Aligned_cols=25  Identities=28%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+|+|.|++|+||||+++.++..+
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.47  E-value=0.002  Score=57.41  Aligned_cols=46  Identities=17%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             hhhHHHHHHHHhc--CCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364           91 DSRLEKLRFLINK--GPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus        91 ~~~~~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      +...+.+...+..  ..+....++|+|++|+||||+++.++..+...|
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3444444444431  122346799999999999999999998765443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.47  E-value=0.0016  Score=53.26  Aligned_cols=25  Identities=28%  Similarity=0.308  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|+|.|++|+||||+++.++..+.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999998764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.46  E-value=0.0017  Score=55.42  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=23.7

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+.+|+|.|++|+||||+++.+...+.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            357899999999999999999988654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.46  E-value=0.0017  Score=53.27  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .|+|.|+.|+||||+++.++..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999998765

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.46  E-value=0.0057  Score=55.05  Aligned_cols=42  Identities=19%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ...+...+.+...+..+|+|+|.+|+|||||+..++..+...
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~  106 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER  106 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            444444444444456899999999999999999999876544

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.45  E-value=0.0012  Score=53.25  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|+|+|++|+||||+++.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4589999999999999999988653

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.45  E-value=0.023  Score=47.68  Aligned_cols=33  Identities=24%  Similarity=0.197  Sum_probs=23.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+.+...+..+    +.++|.|++|+||||++..+.-
T Consensus        66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHh
Confidence            34444445555    6799999999999987766554

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.43  E-value=0.0019  Score=52.28  Aligned_cols=24  Identities=33%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|++|+||||+++.+...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            367999999999999999999886

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.43  E-value=0.0034  Score=50.40  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...++|+|++|+||||+++.+...+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            378999999999999999999987654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.42  E-value=0.0018  Score=53.94  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=22.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...|+|.|++|+||||+++.++..+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            36799999999999999999988653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.42  E-value=0.0013  Score=52.91  Aligned_cols=25  Identities=32%  Similarity=0.394  Sum_probs=18.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|.|.|++|+||||+++.+...+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999999999999999987654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.41  E-value=0.0021  Score=52.15  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=22.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..+|+|.|++|+||||+++.+...+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999988653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.41  E-value=0.0026  Score=62.50  Aligned_cols=57  Identities=14%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             HHHHhhCCCce--EEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          182 MIRSRLRHKKV--LLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       182 ~l~~~l~~~~~--LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      .+.+.+-.++-  +|+||+.      .+...+..++..+.  ..|..||++||+..++..  ++.++.+
T Consensus       212 ~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~ii~l  276 (670)
T 3ux8_A          212 RLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA--ADYLIDI  276 (670)
T ss_dssp             HHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred             HHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence            34455544444  9999964      33344444443332  126679999999887653  5666655

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.39  E-value=0.0019  Score=55.81  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      -.++|+|++|+|||||++.++.....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35899999999999999999986543

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=96.39  E-value=0.091  Score=47.72  Aligned_cols=47  Identities=26%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           86 ELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++|....++.+...+..-......|.|.|.+|+|||++|+.+....
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s  184 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS  184 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence            57777777777776665321122346899999999999998887653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.38  E-value=0.0014  Score=52.32  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=24.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ++++|+|++|+|||||++.+...+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            579999999999999999999987754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.37  E-value=0.0016  Score=51.86  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=22.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..|+|.|++|+||||+++.+...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.37  E-value=0.0022  Score=52.52  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...+|+|.|+.|+||||+++.+...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3578999999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.37  E-value=0.0024  Score=52.39  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=22.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...|+|.|++|+||||+++.+...+.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999988663

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.34  E-value=0.0023  Score=57.80  Aligned_cols=44  Identities=27%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +.+...+..+    ..++|+|++|+|||||++.++..+... ...+.+.
T Consensus       166 ~~l~~~i~~G----~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie  209 (361)
T 2gza_A          166 SFLRRAVQLE----RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE  209 (361)
T ss_dssp             HHHHHHHHTT----CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred             HHHHHHHhcC----CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence            5555556666    679999999999999999999876543 3344443

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.34  E-value=0.0018  Score=53.62  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhc
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +|+|.|+.|+||||+++.+...+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999988764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.34  E-value=0.0077  Score=50.18  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..+.+...+...  ....|+|+|.+|+|||||+..++......
T Consensus        25 ~a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~~~~~   65 (226)
T 2hf9_A           25 LADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDNLKDK   65 (226)
T ss_dssp             HHHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            344555554433  34889999999999999999999875433

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.33  E-value=0.003  Score=54.21  Aligned_cols=26  Identities=27%  Similarity=0.626  Sum_probs=23.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...|.|.|++|+||||+++.+...+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            37899999999999999999998765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0021  Score=52.99  Aligned_cols=22  Identities=41%  Similarity=0.623  Sum_probs=20.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+++|.|++|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.31  E-value=0.0021  Score=54.95  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|+|.|++|+||||+++.++..+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            6899999999999999999997653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.31  E-value=0.002  Score=53.08  Aligned_cols=25  Identities=40%  Similarity=0.573  Sum_probs=22.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+|+|+|++|+||||+++.+...+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999988743

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.31  E-value=0.0055  Score=54.34  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.|+|++|+|||+||..++...
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999999999998763

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.31  E-value=0.0028  Score=58.38  Aligned_cols=51  Identities=20%  Similarity=0.323  Sum_probs=36.6

Q ss_pred             cCcccchhhHHHHHHHHhcC------------CCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           85 KELVGLDSRLEKLRFLINKG------------PTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++|.+...+.+...+...            ....+-+.++|++|+|||++|+.++..+...
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~   77 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP   77 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45788887777776555210            0123568999999999999999999876543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.31  E-value=0.0025  Score=50.54  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .|+|.|++|+||||+++.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.30  E-value=0.0024  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.28  E-value=0.0025  Score=52.64  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..+|+|.|+.|+||||+++.+...+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999987654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.26  E-value=0.0026  Score=51.63  Aligned_cols=25  Identities=36%  Similarity=0.698  Sum_probs=22.4

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhc
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +|+|.|+.|+||||+++.+...+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999987753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.25  E-value=0.0014  Score=55.15  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=16.2

Q ss_pred             EEEEEeccCCcchhHHHHHHH-HHH
Q 017364          109 RMIGICGMGGIGKTTLARVVY-DLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~-~~~  132 (373)
                      .+++|+|++|+|||||++.++ ...
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999998 764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.24  E-value=0.006  Score=50.66  Aligned_cols=42  Identities=29%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +..+.+...+...  ..+.++|+|.+|+|||||+..++......
T Consensus        16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~~~~~   57 (221)
T 2wsm_A           16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIERIGNE   57 (221)
T ss_dssp             HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            3444555544432  34899999999999999999999876544

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.24  E-value=0.0044  Score=54.68  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.++|+|+|-||+||||.+..++..+......+..+
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI   82 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI   82 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence            459999999999999999999998877654444444

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.24  E-value=0.0071  Score=55.54  Aligned_cols=34  Identities=18%  Similarity=0.122  Sum_probs=28.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .+++|+|++|+|||||++.++..+......+++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~  201 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  201 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence            7899999999999999999999876654444444

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.24  E-value=0.0041  Score=49.74  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++++|.|++|+|||||+..+...+...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            4789999999999999999999876543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.19  E-value=0.0026  Score=52.85  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.18  E-value=0.0025  Score=53.21  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..|+|.|++|+||||+++.++..+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999998764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.16  E-value=0.0026  Score=53.36  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..|+|.|++|+||||+++.++..+
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            679999999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.15  E-value=0.0019  Score=55.46  Aligned_cols=25  Identities=28%  Similarity=0.600  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+|||||++.++.-+.
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            7899999999999999999987543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.14  E-value=0.0059  Score=54.77  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..++.|+|++|+|||||+..++...
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3899999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.12  E-value=0.0054  Score=55.46  Aligned_cols=26  Identities=35%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ....++|+|++|+|||||++.++...
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34789999999999999999999754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.10  E-value=0.032  Score=51.21  Aligned_cols=35  Identities=23%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ...+++|+|++|+||||++..++..+......+.+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll  131 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL  131 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            35789999999999999999999988765433433

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.10  E-value=0.024  Score=52.29  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|+++|.+|+||||++..++..+...
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            36899999999999999999999887765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.10  E-value=0.054  Score=50.87  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+.+|+|+|.+|+||||++..++..+...
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~  128 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK  128 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            36799999999999999999999877654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.09  E-value=0.004  Score=51.52  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+||||+++.+...+.
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            7899999999999999999998776

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.06  E-value=0.0037  Score=50.91  Aligned_cols=25  Identities=28%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+|+|+|+.|+||||+++.+...+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3689999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.04  E-value=0.0033  Score=52.29  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..|+|.|++|+||||+++.++..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            568999999999999999998876

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.02  E-value=0.0077  Score=57.33  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=25.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      .+++|+|++|+|||||++.++..+....
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~~~  397 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLMEMG  397 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhcccC
Confidence            7899999999999999999999887543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.01  E-value=0.011  Score=52.87  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASC  140 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~  140 (373)
                      .+..+++|.|++|+|||||+..++..+......+.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~   88 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA   88 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            34589999999999999999999987765433333

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.00  E-value=0.0041  Score=52.15  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+||||+++.++..+.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5899999999999999999988763

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.00  E-value=0.045  Score=52.51  Aligned_cols=32  Identities=28%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASC  140 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~  140 (373)
                      +++.|.|++|+||||++..+...+......+.
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl  236 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVG  236 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            68899999999999999999987765443333

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.00  E-value=0.0028  Score=55.29  Aligned_cols=26  Identities=19%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..+|+|.|+.|+||||+++.+...+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999988654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.99  E-value=0.0021  Score=58.82  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+++|.|++|+|||||++.++..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCC
Confidence            68999999999999999999984

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.99  E-value=0.0043  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++.|.|++|+||||.|+.++..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.98  E-value=0.0038  Score=50.67  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .-.++|.|++|+|||||++.+....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3678999999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.97  E-value=0.0036  Score=55.45  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..++++|+|+.|+|||||++.+....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            35899999999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.95  E-value=0.0087  Score=64.77  Aligned_cols=35  Identities=31%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +.+.|+||+|+|||+||..++.........+.|+.
T Consensus      1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A         1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            78999999999999999999988766655666664

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.94  E-value=0.0039  Score=51.10  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..|+|.|+.|+||||+++.+...+
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            679999999999999999998865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.94  E-value=0.0043  Score=55.01  Aligned_cols=25  Identities=32%  Similarity=0.276  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|+|.|++|+||||||..++..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.93  E-value=0.011  Score=59.87  Aligned_cols=22  Identities=27%  Similarity=0.063  Sum_probs=20.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVY  129 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~  129 (373)
                      ..+++|+||+|.||||+++.++
T Consensus       662 g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999984

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.93  E-value=0.0045  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.8

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.93  E-value=0.0046  Score=50.79  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|+|.|+.|+||||+++.++..+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3799999999999999999988654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.93  E-value=0.0044  Score=55.50  Aligned_cols=27  Identities=33%  Similarity=0.514  Sum_probs=24.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.+++.....
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            789999999999999999999987654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.92  E-value=0.0051  Score=51.11  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+|+|.|+.|+||||+++.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=95.92  E-value=0.0096  Score=60.94  Aligned_cols=23  Identities=30%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..+++|+|++|.|||||++.+ .-
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HH
Confidence            379999999999999999998 53

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.92  E-value=0.0047  Score=51.60  Aligned_cols=23  Identities=39%  Similarity=0.369  Sum_probs=21.0

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+++.++..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998866

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.88  E-value=0.0045  Score=54.49  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=22.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+|++|+|||||+..++..+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5899999999999999999998653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.88  E-value=0.0047  Score=53.86  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=22.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++++|.||+|+|||||+..++..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4789999999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.86  E-value=0.0052  Score=53.37  Aligned_cols=24  Identities=25%  Similarity=0.641  Sum_probs=21.5

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+.+|+|+|++|+||||+++.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999983

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.85  E-value=0.0047  Score=50.43  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|++|+|||||++.+...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999874

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.84  E-value=0.0045  Score=54.06  Aligned_cols=24  Identities=21%  Similarity=0.450  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++++|.||+|+|||||+..++..+
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            689999999999999999998754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.83  E-value=0.0076  Score=63.54  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|+|++|+|||||++.+...+.+
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~g~~~~  442 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQRLYDP  442 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            78999999999999999998875543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.82  E-value=0.004  Score=57.02  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             HHHHHHHHhcCCCCeEE--EEEeccCCcchhHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRM--IGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~--v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+...+..|    .+  ++|+|++|+|||||++.++..
T Consensus        30 L~~vsl~i~~G----ei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQG----FCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-C----CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCC----CeeEEEEECCCCCCHHHHHHHHhCc
Confidence            67776666555    55  999999999999999999863

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.82  E-value=0.0047  Score=49.66  Aligned_cols=25  Identities=20%  Similarity=0.456  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+.+|+|++|+|||||+..++.-+.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            4789999999999999999887654

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.81  E-value=0.0085  Score=48.38  Aligned_cols=27  Identities=22%  Similarity=0.111  Sum_probs=22.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.|+|+.|+||||++..++.+....
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~   30 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLG   30 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            678899999999999998887776443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.79  E-value=0.011  Score=49.68  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=24.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...|+|.|++|+||||+++.+.+.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            378999999999999999999998875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.77  E-value=0.0052  Score=64.94  Aligned_cols=26  Identities=19%  Similarity=0.451  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|+|+.|+|||||++.+...+.+
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~~~  470 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYYDV  470 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred             cEEEEEecCCCcHHHHHHHhcccccc
Confidence            78999999999999999998875543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.76  E-value=0.0097  Score=49.38  Aligned_cols=33  Identities=12%  Similarity=-0.085  Sum_probs=25.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      -.|.+.|.||+||||++..++..+......+.+
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v   39 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMA   39 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence            458899999999999999999887655433333

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.76  E-value=0.0062  Score=51.20  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..|+|.|++|+||||+++.++..+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.71  E-value=0.0062  Score=57.52  Aligned_cols=37  Identities=24%  Similarity=0.207  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+..+    ..++|.|++|+||||+++.+...+.+
T Consensus       250 l~~l~~~v~~g----~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          250 LAYLWLAIEHK----FSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             HHHHHHHHHTT----CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHhCC----CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            45555555555    55999999999999999999887654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.70  E-value=0.0047  Score=50.11  Aligned_cols=24  Identities=25%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +.|+|.|++|+||||||..++.+.
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            678999999999999999998753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.69  E-value=0.0057  Score=64.69  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=22.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..|+|+|++|+|||||++.+..-+.
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCcc
Confidence            6799999999999999999886443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.69  E-value=0.011  Score=52.97  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..+|+|+|++|+|||||...+.......
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~  101 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTER  101 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence            5899999999999999999999876554

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.69  E-value=0.0061  Score=55.10  Aligned_cols=28  Identities=18%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ...++|+|++|+|||||++.++..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3789999999999999999999876654

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.67  E-value=0.012  Score=50.23  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=28.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ...+..++.........+.|+||+|+|||.+|..+++..
T Consensus        90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            344556665432334579999999999999999998854

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.66  E-value=0.0098  Score=55.90  Aligned_cols=48  Identities=10%  Similarity=0.012  Sum_probs=33.9

Q ss_pred             cccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           87 LVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...|.+..+.+.....+......+|.+.|++|+||||+++.++.++..
T Consensus       374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            444555555555544322223478999999999999999999998874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0054  Score=57.07  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.+++-....
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~  165 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYALKF  165 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccccc
Confidence            789999999999999999999865443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.64  E-value=0.0044  Score=54.77  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++|+|.||.|+|||||+..++.++
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            689999999999999999998864

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=95.61  E-value=0.042  Score=50.77  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +.++|.|.+|+|||+|+..++..+..
T Consensus       154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~  179 (482)
T 2ck3_D          154 GKIGLFGGAGVGKTVLIMELINNVAK  179 (482)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTT
T ss_pred             CeeeeecCCCCChHHHHHHHHHhhHh
Confidence            78999999999999999999988643

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=95.61  E-value=0.028  Score=46.15  Aligned_cols=35  Identities=14%  Similarity=-0.015  Sum_probs=27.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+..++|+-|.||||.+...+.+.......++.+
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~   62 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF   62 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            37889999999999999988888876554444444

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.61  E-value=0.0078  Score=50.69  Aligned_cols=25  Identities=28%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..+|+|.|++|+||||+++.++..+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4789999999999999999998865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.60  E-value=0.0065  Score=56.62  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS  139 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~  139 (373)
                      .+++|.|++|+|||||++.++.-..+.-+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I   60 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL   60 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence            6899999999999999999998776554433

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.60  E-value=0.0073  Score=55.88  Aligned_cols=27  Identities=19%  Similarity=0.407  Sum_probs=24.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.+++.....
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            789999999999999999999976654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.58  E-value=0.014  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++++.|.+|+||||++..++..+.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999998776

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.57  E-value=0.008  Score=46.81  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +.|+|.|.+|+|||||+..+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.57  E-value=0.028  Score=45.86  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .|+|-|.-|+||||.++.+++.+......+++.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            478899999999999999999987765555544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.57  E-value=0.0071  Score=52.97  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+|.|.|++|+||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.56  E-value=0.0076  Score=47.49  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..|+|.|.+|+|||||++.+.+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5689999999999999999976

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.54  E-value=0.025  Score=46.72  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=25.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ..|+|.|+.|+||||+++.+.+.+....
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~   34 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRERG   34 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            7899999999999999999999887553

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.53  E-value=0.016  Score=48.97  Aligned_cols=34  Identities=26%  Similarity=0.209  Sum_probs=25.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH-hccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI-SHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~  142 (373)
                      .++.|.|++|+|||+||.+++... ......++++
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~   65 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV   65 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence            789999999999999999987653 3333344444

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.53  E-value=0.008  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+.+|+|++|+|||||+..++.-+
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            688999999999999999987644

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.49  E-value=0.0079  Score=55.48  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+|+|+|++|+||||++..++..+......+.++
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv  133 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI  133 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            56899999999999999999998876543333333

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.41  E-value=0.0098  Score=53.87  Aligned_cols=25  Identities=28%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|+|.||+|+|||||+..++..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            6899999999999999999998754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.34  E-value=0.0066  Score=48.82  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||++.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999886

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.34  E-value=0.0058  Score=51.29  Aligned_cols=24  Identities=29%  Similarity=0.122  Sum_probs=21.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..+++|.|+.|+|||||++.+...
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            479999999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.30  E-value=0.01  Score=56.44  Aligned_cols=47  Identities=21%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             hhHHHHHH-HHhcCCCCeEEEEEeccCCcchhHHHHHH--HHHHhccccceEEEe
Q 017364           92 SRLEKLRF-LINKGPTDVRMIGICGMGGIGKTTLARVV--YDLISHEFEASCFLA  143 (373)
Q Consensus        92 ~~~~~l~~-~l~~~~~~~~~v~I~G~~GiGKTtLa~~~--~~~~~~~f~~~~~~~  143 (373)
                      ..++.+.. -+..+    .+++|.|++|+|||||++.+  ..-... ....+++.
T Consensus        26 ~~Ld~i~~G~i~~G----e~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~   75 (525)
T 1tf7_A           26 EGFDDISHGGLPIG----RSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVT   75 (525)
T ss_dssp             TTHHHHTTSSEETT----SEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             hhHHHhcCCCCCCC----eEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence            45666665 55566    78999999999999999995  343432 23455553

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.29  E-value=0.027  Score=47.31  Aligned_cols=28  Identities=32%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ...|+|.|+.|+||||+++.+.+.+...
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3789999999999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.29  E-value=0.0099  Score=47.76  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=21.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||++.+.+.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999863

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.28  E-value=0.014  Score=53.21  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=20.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++.|+|++|+|||||+..++-.
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHHHH
Confidence            78999999999999999988754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.24  E-value=0.0071  Score=55.69  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +.+|.|+|++|+||||+++.++..+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999987644

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.22  E-value=0.013  Score=45.83  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            356899999999999999999874

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.012  Score=47.59  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=21.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|.+|+|||||+..+...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999998864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.19  E-value=0.012  Score=49.74  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +..|+|.|..|+||||+++.++..+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999998764

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=95.18  E-value=0.021  Score=48.96  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ++|+|.|.||+||||++..++..+......+..+
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli   35 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence            5778899999999999999999887654444444

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.16  E-value=0.019  Score=61.33  Aligned_cols=101  Identities=20%  Similarity=0.183  Sum_probs=0.0

Q ss_pred             HHHHHHHHh-cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC
Q 017364           94 LEKLRFLIN-KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG  172 (373)
Q Consensus        94 ~~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
                      +..|...+. .+-....++.|.|++|+||||||..++.........+.|+.    ......... ...+--......-..
T Consensus       717 ~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS----~Ees~~ql~-A~~lGvd~~~L~i~~  791 (1706)
T 3cmw_A          717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-ARKLGVDIDNLLCSQ  791 (1706)
T ss_dssp             CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHH-HHHTTCCGGGCEEEC
T ss_pred             cHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe----ccchHHHHH-HHHcCCChhheEEec


Q ss_pred             CcchhhhHHHHHHhh-CCCceEEEeccc
Q 017364          173 VWNVYDGMNMIRSRL-RHKKVLLVIDDV  199 (373)
Q Consensus       173 ~~~~~~~~~~l~~~l-~~~~~LlvlDdv  199 (373)
                      ..+..+....+++.. ..+.-++|+|.+
T Consensus       792 ~~~leei~~~l~~lv~~~~~~lVVIDsL  819 (1706)
T 3cmw_A          792 PDTGEQALEICDALARSGAVDVIVVDSV  819 (1706)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred             CCcHHHHHHHHHHHHHccCCCEEEEech

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=95.14  E-value=0.13  Score=57.67  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +-|.++||+|+|||++|+.+....
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhcC
Confidence            668999999999999998877643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.14  E-value=0.029  Score=46.84  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..|+|.|+.|+||||+++.+++.+...
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            689999999999999999999987654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.13  E-value=0.017  Score=46.29  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=21.6

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ....|+|+|.+|+|||||+..+.+.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            4477999999999999999998754

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.12  E-value=0.15  Score=50.70  Aligned_cols=35  Identities=20%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..+.+...+..+    ..++|+|++|+||||++..++..
T Consensus        98 q~~~i~~~l~~~----~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A           98 QRDEFLKLYQNN----QIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC----CeEEEECCCCCCHHHHHHHHHHH
Confidence            345555666655    67999999999999977776544

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.10  E-value=0.028  Score=53.53  Aligned_cols=45  Identities=16%  Similarity=0.115  Sum_probs=30.3

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      |.+..+.+.....+......+|.++|++|+||||+++.+...+..
T Consensus       354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            333344444444221223478999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.07  E-value=0.013  Score=45.66  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|++.|.+|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.05  E-value=0.04  Score=45.77  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=24.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...|+|.|+.|+||||+++.+.+.+..
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            478999999999999999999998765

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.03  E-value=0.016  Score=45.76  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .-.|+|.|.+|+|||||+..+.+
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            35689999999999999999875

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=95.01  E-value=0.024  Score=49.22  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=26.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ++|+|.|.||+||||++..++..+......+..+
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli   36 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV   36 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            6788899999999999999998876553334333

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.00  E-value=0.019  Score=44.83  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|.|.+|+|||||+..+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.99  E-value=0.04  Score=45.47  Aligned_cols=28  Identities=36%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ..|+|.|+.|+||||+++.+.+.+....
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~   31 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLG   31 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            6799999999999999999999886553

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.99  E-value=0.013  Score=46.50  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|+|.+|+|||||++.+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.97  E-value=0.016  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ..++|.|++|+||||+++.++..+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998865

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.95  E-value=0.015  Score=45.89  Aligned_cols=23  Identities=30%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-|.|.|++|+||||||..+..+
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            56899999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.92  E-value=0.021  Score=45.31  Aligned_cols=25  Identities=24%  Similarity=0.464  Sum_probs=21.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ....|+|.|.+|+|||||+..+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.92  E-value=0.018  Score=50.46  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+...+. +    .+++|.|++|+|||||++.+. ....
T Consensus       156 i~~L~~~l~-G----~i~~l~G~sG~GKSTLln~l~-~~~~  190 (302)
T 2yv5_A          156 IDELVDYLE-G----FICILAGPSGVGKSSILSRLT-GEEL  190 (302)
T ss_dssp             HHHHHHHTT-T----CEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred             HHHHHhhcc-C----cEEEEECCCCCCHHHHHHHHH-HhhC
Confidence            455555443 3    689999999999999999998 5443

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=94.91  E-value=0.2  Score=41.94  Aligned_cols=38  Identities=21%  Similarity=0.086  Sum_probs=27.4

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      |..+.+.+..++...     .+.|+|+.|.|||.++..++...
T Consensus        95 ~~~Q~~ai~~~~~~~-----~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           95 RDYQEKALERWLVDK-----RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             CHHHHHHHHHHTTTS-----EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhCC-----CEEEEeCCCCCHHHHHHHHHHHc
Confidence            455555555555432     28899999999999998887764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.89  E-value=0.0083  Score=57.84  Aligned_cols=26  Identities=23%  Similarity=0.510  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..++|+|++|+|||||++.++..+.+
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~~p  395 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFYDI  395 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccCC
Confidence            78999999999999999999876543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.86  E-value=0.016  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998864

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.84  E-value=0.025  Score=52.40  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc-cccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH-EFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~  142 (373)
                      +.++|.|.+|+|||+|+..++..+.. +.+.+++.
T Consensus       166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~  200 (498)
T 1fx0_B          166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG  200 (498)
T ss_dssp             CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred             CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence            67999999999999999999998643 33444444

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.84  E-value=0.031  Score=60.65  Aligned_cols=82  Identities=18%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC-----CCcchhhhHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS-----GVWNVYDGMNMI  183 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l  183 (373)
                      .++.|+|++|+||||||..++.........++|+..    ......  ..   ... ++....     ...+..+....+
T Consensus       384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~----E~s~~~--~~---a~~-lGvd~~~L~I~~~~~~e~il~~~  453 (2050)
T 3cmu_A          384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA----EHALDP--IY---ARK-LGVDIDNLLCSQPDTGEQALEIC  453 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT----TSCCCH--HH---HHH-TTCCTTTCEEECCSSHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc----CCCHHH--HH---HHH-cCCCHHHeEEeCCCCHHHHHHHH
Confidence            789999999999999999999887765556666641    111111  11   112 222111     123444445545


Q ss_pred             HHhh-CCCceEEEecccc
Q 017364          184 RSRL-RHKKVLLVIDDVI  200 (373)
Q Consensus       184 ~~~l-~~~~~LlvlDdv~  200 (373)
                      .... ....-++|+|.+.
T Consensus       454 ~~lv~~~~~~lIVIDSL~  471 (2050)
T 3cmu_A          454 DALARSGAVDVIVVDSVA  471 (2050)
T ss_dssp             HHHHHHTCCSEEEESCGG
T ss_pred             HHHHHhcCCcEEEECCHH
Confidence            4433 3456799999763

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.83  E-value=0.039  Score=51.45  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE  137 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~  137 (373)
                      .+..+...+..+.   +.+.|.|++|+|||+++..++..+.....
T Consensus        33 av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           33 AFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             HHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            3444444555432   48999999999999999999988765543

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.83  E-value=0.0062  Score=58.75  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=35.1

Q ss_pred             ccCcccchhhHHHHHHHHhcCCCC---------eEEEEEeccCCcchhHHHHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKGPTD---------VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~~~~---------~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+.++|.+...+.+...+..+...         ...|.++|++|+|||+||+.++...
T Consensus       294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~  351 (595)
T 3f9v_A          294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA  351 (595)
T ss_dssp             SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred             cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence            357899888776665555444210         0158999999999999999988754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.82  E-value=0.018  Score=47.05  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +....+.+.......  ..-.|+|.|.+|+|||||+..+...
T Consensus        14 ~~~~~~~m~~~~~~~--~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           14 LVPRGSHMENLYFQG--QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             ------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cccchhHHHhHhhcC--CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            333444444433322  2367899999999999999998863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.82  E-value=0.017  Score=45.38  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999998864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.81  E-value=0.015  Score=46.18  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.81  E-value=0.017  Score=47.66  Aligned_cols=24  Identities=29%  Similarity=0.225  Sum_probs=21.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|++|+|||||+..+...
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999998874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.81  E-value=0.029  Score=46.04  Aligned_cols=28  Identities=32%  Similarity=0.523  Sum_probs=24.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ..|+|-|.-|+||||+++.+.+.+...+
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~   30 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDY   30 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence            5689999999999999999999886543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.80  E-value=0.017  Score=45.11  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||+..+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.80  E-value=0.016  Score=45.36  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.78  E-value=0.017  Score=46.46  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||||+..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.78  E-value=0.016  Score=45.44  Aligned_cols=23  Identities=13%  Similarity=0.200  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.77  E-value=0.018  Score=45.22  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=94.76  E-value=0.0045  Score=51.74  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=24.3

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEFEAS  139 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~  139 (373)
                      +++|+|++|+|||||+..++.-+.+..+.+
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i   58 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLL   58 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence            467899999999999999998876654433

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.76  E-value=0.013  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|++|+|||||++.++..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            34699999999999999997753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.75  E-value=0.021  Score=45.33  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            467899999999999999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.74  E-value=0.016  Score=45.86  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999863

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.74  E-value=0.052  Score=52.98  Aligned_cols=47  Identities=21%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+.+.+...|...    ....|+||+|.|||+.+.++...+-.. +..+.+.
T Consensus       193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~  239 (646)
T 4b3f_X          193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCC  239 (646)
T ss_dssp             HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred             HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEE
Confidence            4566777777644    578899999999997655555443322 2344444

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.72  E-value=0.021  Score=44.83  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      -.|+|.|.+|+|||||+..+.+
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999863

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.72  E-value=0.0086  Score=49.17  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|+|++|+|||||++.++..
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            78999999999999999987753

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.72  E-value=0.032  Score=53.41  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..+|.|.|++|+||||+|+.+...+..
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            478999999999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.71  E-value=0.018  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.71  E-value=0.016  Score=51.88  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=21.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.+.....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            6899999999999999999886443

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.70  E-value=0.016  Score=46.88  Aligned_cols=24  Identities=17%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|.+|+|||||+..+.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            477999999999999999998753

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.69  E-value=0.032  Score=52.86  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=24.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..+|.++|++|+||||+++.++..+...
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~   62 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWI   62 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3789999999999999999999876533

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.69  E-value=0.022  Score=45.59  Aligned_cols=24  Identities=29%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            356889999999999999999874

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.67  E-value=0.019  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|.|.+|+|||||+..+.+.
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998863

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=94.67  E-value=0.033  Score=47.88  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=25.6

Q ss_pred             HHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           97 LRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        97 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +...+.........|++.|.+|+|||||+..+++.
T Consensus        28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            33334333334578999999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.66  E-value=0.023  Score=44.53  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998863

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=94.66  E-value=0.038  Score=47.25  Aligned_cols=36  Identities=14%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+...+.........|+|.|.+|+|||||+..+.+.
T Consensus        24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            333344433334577999999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.62  E-value=0.018  Score=45.07  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.62  E-value=0.016  Score=45.45  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      -.|+|.|.+|+|||||+..+.+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4688999999999999999886

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.62  E-value=0.018  Score=46.65  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56899999999999999998853

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.61  E-value=0.02  Score=46.96  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+.+|+|++|+||||+...+..-+.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            7899999999999999998876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.60  E-value=0.016  Score=46.02  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.59  E-value=0.016  Score=47.93  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+|+|.|+.|+||||+++.+...+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            469999999999999999988754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.58  E-value=0.018  Score=45.02  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.8

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+|+|||||++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            588999999999999998864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.58  E-value=0.025  Score=44.38  Aligned_cols=23  Identities=35%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|.|.+|+|||||+..+...
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            67899999999999999999763

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=94.53  E-value=0.022  Score=46.58  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=23.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|+|.|+.|+||||+++.++.++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999999774

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.53  E-value=0.019  Score=46.15  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            56899999999999999998864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.53  E-value=0.022  Score=45.18  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ....|+|.|.+|+|||||+..+.+
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            346789999999999999999875

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=94.50  E-value=0.033  Score=47.01  Aligned_cols=32  Identities=25%  Similarity=0.611  Sum_probs=25.4

Q ss_pred             EEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          111 IGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      |+|.|.||+||||++..++..+......+..+
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli   34 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV   34 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            66699999999999999999887664444444

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.50  E-value=0.019  Score=46.22  Aligned_cols=24  Identities=17%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            357899999999999999998864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.49  E-value=0.02  Score=50.21  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|.+|+|||||+..+...
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.47  E-value=0.023  Score=45.00  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999874

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.46  E-value=0.021  Score=46.13  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999998874

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.45  E-value=0.023  Score=44.98  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999863

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.41  E-value=0.029  Score=45.03  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467899999999999999999863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.40  E-value=0.022  Score=45.68  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||+..+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4889999999999999998863

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.40  E-value=0.019  Score=45.55  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            356899999999999999998853

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.40  E-value=0.024  Score=45.21  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.40  E-value=0.029  Score=44.64  Aligned_cols=23  Identities=35%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ...|+|.|.+|+|||||+..+..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            47899999999999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.39  E-value=0.024  Score=45.33  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+.+.
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            457899999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.38  E-value=0.024  Score=45.35  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.35  E-value=0.028  Score=44.68  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            467899999999999999999853

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.34  E-value=0.029  Score=45.71  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467899999999999999999874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.34  E-value=0.031  Score=44.56  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999998863

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=94.33  E-value=0.11  Score=47.69  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHH
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ...++..|.|++|+||||++...+.
T Consensus       159 ~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          159 SSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccccEEEEEcCCCCCHHHHHHHHhc
Confidence            3468999999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.30  E-value=0.026  Score=44.83  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            56899999999999999998864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=94.30  E-value=0.025  Score=50.51  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++.+|+|++|.|||||+..++.-
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~~~   46 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAILVG   46 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            78899999999999999988653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.30  E-value=0.027  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|.+|+|||||+..+...
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCC
Confidence            477999999999999999999863

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.30  E-value=0.026  Score=45.03  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            357899999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.29  E-value=0.032  Score=44.99  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+...
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.29  E-value=0.027  Score=45.34  Aligned_cols=23  Identities=26%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            46899999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.28  E-value=0.024  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++.+|+|++|+|||||...++..+
T Consensus        24 g~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999888654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.27  E-value=0.024  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56899999999999999999874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.26  E-value=0.027  Score=44.70  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|.|.+|+|||||+..+...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            356899999999999999998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.26  E-value=0.026  Score=46.11  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|.+|+|||||+..+...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            357899999999999999998864

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=94.26  E-value=0.051  Score=48.53  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=27.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh--ccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS--HEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~  142 (373)
                      .+++.+.|.||+||||+|..++..+.  .....+..+
T Consensus        18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli   54 (348)
T 3io3_A           18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI   54 (348)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            48899999999999999999998877  443344433

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.25  E-value=0.026  Score=45.53  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.25  E-value=0.026  Score=45.71  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=21.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.25  E-value=0.024  Score=45.02  Aligned_cols=23  Identities=26%  Similarity=0.157  Sum_probs=20.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999998763

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.24  E-value=0.024  Score=46.47  Aligned_cols=24  Identities=29%  Similarity=0.203  Sum_probs=21.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999999874

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=94.23  E-value=0.055  Score=48.03  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=27.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      .+++.+.|.||+||||++..++..+......+..+
T Consensus        16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli   50 (334)
T 3iqw_A           16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL   50 (334)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            47888999999999999999998877654444444

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.21  E-value=0.025  Score=45.97  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..|+|.|.+|+|||||+..+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.20  E-value=0.052  Score=43.45  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..|+|.|.+|+|||||+..+..
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            7799999999999999999885

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.19  E-value=0.037  Score=45.03  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            467899999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.19  E-value=0.026  Score=45.41  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.16  E-value=0.02  Score=46.43  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             eEEEEEeccCCcchhHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVY  129 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~  129 (373)
                      ...|+|+|.+|+|||||+..+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999999985

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.16  E-value=0.029  Score=45.12  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999864

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.14  E-value=0.05  Score=44.35  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=25.9

Q ss_pred             EEEEEe-ccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGIC-GMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ++|+|+ +-||+||||++..++..+......+..+
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli   36 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV   36 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            567776 6789999999999999877654444444

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.14  E-value=0.028  Score=45.70  Aligned_cols=24  Identities=33%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            367899999999999999999874

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.13  E-value=0.025  Score=48.65  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|.|.+|+|||||+..+.+.
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.12  E-value=0.011  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ...|+|.|+.|+||||+++.+...+
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4789999999999999999987755

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.11  E-value=0.011  Score=59.72  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=24.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+.+.
T Consensus       700 eivaIiGpNGSGKSTLLklLaGll~P~  726 (986)
T 2iw3_A          700 SRIAVIGPNGAGKSTLINVLTGELLPT  726 (986)
T ss_dssp             CEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            689999999999999999999876544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.11  E-value=0.027  Score=45.39  Aligned_cols=23  Identities=30%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999998863

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.11  E-value=0.014  Score=51.09  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.+.....
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            6899999999999999999876443

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.11  E-value=0.027  Score=45.48  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+.+.
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999999874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.10  E-value=0.029  Score=46.08  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=20.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|.|.+|+|||||+..+...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.07  E-value=0.05  Score=50.89  Aligned_cols=27  Identities=19%  Similarity=0.341  Sum_probs=23.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+|.++|++|+||||+++.++..+...
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l~~~   66 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYLNFI   66 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            689999999999999999999876533

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.07  E-value=0.047  Score=47.77  Aligned_cols=23  Identities=30%  Similarity=0.276  Sum_probs=21.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-++|.|++|+||||+|..+..+
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc
Confidence            67999999999999999999874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.07  E-value=0.031  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999998863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.04  E-value=0.031  Score=45.03  Aligned_cols=25  Identities=32%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .-.|+|.|.+|+|||||++.+.+..
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3568999999999999997666543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.04  E-value=0.018  Score=52.79  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|+|++|+|||||++.++...
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36999999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.02  E-value=0.04  Score=44.52  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+...
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcC
Confidence            357899999999999999999873

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.02  E-value=0.029  Score=46.26  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .-.|+|+|.+|+|||||+..+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35689999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.99  E-value=0.032  Score=45.31  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+...
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            367999999999999999998863

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.97  E-value=0.037  Score=45.78  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=24.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ..|+|.|+.|+||||+++.+.+.+..
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            68999999999999999999998865

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=93.96  E-value=0.034  Score=44.93  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ...|+|+|.+|+|||||+..+.+
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            57899999999999999999875

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=93.95  E-value=0.032  Score=50.04  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+++|+|++|+|||||...++.-
T Consensus        27 g~~~i~G~nG~GKttll~ai~~~   49 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYLA   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHh
Confidence            58999999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.93  E-value=0.033  Score=44.78  Aligned_cols=23  Identities=35%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56899999999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=93.93  E-value=0.028  Score=49.25  Aligned_cols=36  Identities=22%  Similarity=0.547  Sum_probs=26.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++++...+. +    .+++|.|++|+|||||++.+......
T Consensus       160 v~~lf~~l~-g----eiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          160 IEELKEYLK-G----KISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             HHHHHHHHS-S----SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             HHHHHHHhc-C----CeEEEECCCCCcHHHHHHHhcccccc
Confidence            444444443 3    67999999999999999998875443

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.93  E-value=0.059  Score=51.91  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ...+|.|.|++|+||||+++.+...+..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~   78 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVC   78 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            3478999999999999999999988743

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=93.92  E-value=0.093  Score=46.94  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=26.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ...++.+.|.||+||||+|..++..+......+..+
T Consensus        25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv   60 (349)
T 3ug7_A           25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV   60 (349)
T ss_dssp             SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            346778889999999999999998776553333333

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=93.91  E-value=0.025  Score=46.00  Aligned_cols=24  Identities=29%  Similarity=0.205  Sum_probs=20.9

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-.|+|+|.+|+|||||+..+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999998864

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=93.90  E-value=0.069  Score=44.87  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=26.2

Q ss_pred             eEEEEEe-ccCCcchhHHHHHHHHHHhcc-ccceEEE
Q 017364          108 VRMIGIC-GMGGIGKTTLARVVYDLISHE-FEASCFL  142 (373)
Q Consensus       108 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~-f~~~~~~  142 (373)
                      .++|+|+ +-||+||||++..++..+... ...+..+
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli   40 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV   40 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence            3677776 568999999999999988766 3344444

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=93.89  E-value=0.053  Score=50.24  Aligned_cols=45  Identities=27%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             cccchhhHHHHHHHHhcC---------CCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           87 LVGLDSRLEKLRFLINKG---------PTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        87 ~vGR~~~~~~l~~~l~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      =.|-++.++.+...+...         ..+...++|+|++|+|||||++.+...
T Consensus       150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence            345566677776666421         123468999999999999999999874

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.88  E-value=0.034  Score=45.37  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|.|.+|+|||||+..+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	9e-44
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	3e-04

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  150 bits (380), Expect = 9e-44
 Identities = 38/260 (14%), Positives = 83/260 (31%), Gaps = 18/260 (6%)

Query: 87  LVGLDSRLEKL-RFLINKGPTDVRMIGICGMGGIGKTTLARVVYD----LISHEFEASCF 141
               +  ++++ + L      D   + + G  G GK+ +A         LI   +++  +
Sbjct: 22  CYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVW 81

Query: 142 LANVREISKKSGLVFLQKQLISQLLNLP-----DSGVWNVYDGMNMIRSRLRHKKVLLVI 196
           L +     K +  +F    L+ +  +          V +V     +  + +     L V 
Sbjct: 82  LKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVF 141

Query: 197 DDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL-LMAHGVDEVYMHEHLNYDEALGLFC 255
           DDV++ +             +  R  +T+RD  +   A    E      L  DE      
Sbjct: 142 DDVVQEET------IRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLE 195

Query: 256 LKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLERDPENE 315
                     +  E +    ++ + G P  L +       +T  +      +LE      
Sbjct: 196 AYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVG 254

Query: 316 ILDVLQISFDGLKETEKKIF 335
           +  +   S+  L    ++  
Sbjct: 255 VECITPYSYKSLAMALQRCV 274

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 18/207 (8%)

Query: 83  TLKELVGLDSRLEKLRFLIN---KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEAS 139
           TL E +G +   +KLR  +         +  + + G  G+GKTTLA     +I+HE   +
Sbjct: 7   TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH----VIAHELGVN 62

Query: 140 CFLANVREISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDV 199
             + +   I K          L + L N  + G     D ++   SR   + +   ++D 
Sbjct: 63  LRVTSGPAIEKP-------GDLAAILANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDF 114

Query: 200 IELQQLESLAGKHDWFGIGSR---IFITSRDKHLLMAHGVDEVYMHEHLNYDEALGLFCL 256
           +    +              R   I  T+R   +          +     Y        +
Sbjct: 115 VMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGV 174

Query: 257 KAFKSHKPWKGYEQLSKSVVKYAGGLP 283
                    +  E+ +  + + + G  
Sbjct: 175 MRDARLLGVRITEEAALEIGRRSRGTM 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	100.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.57
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.22
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.14
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.08
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.07
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.05
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.05
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.98
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.96
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.94
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.89
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.85
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.84
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.83
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.83
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.77
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.75
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.71
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.67
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.64
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.63
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.07
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.04
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.03
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	98.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.99
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.96
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.93
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.92
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.89
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.86
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.86
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.85
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.83
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.82
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.82
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.8
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.78
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.77
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.76
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.69
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.65
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.63
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.62
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.6
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.59
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.58
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.55
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.54
d1okkd2	207	GTPase domain of the signal recognition particle r	97.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.47
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.46
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.43
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.42
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.39
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.36
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.32
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.32
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.31
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.31
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.3
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.24
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.23
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.13
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.12
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.12
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.07
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.07
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.07
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.06
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.06
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.05
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.03
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.02
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.0
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.0
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.91
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.9
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.86
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.85
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.84
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.8
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.8
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.78
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.77
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.76
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.73
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.72
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.71
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.69
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.69
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.67
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.65
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.58
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.57
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.56
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.5
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.49
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.44
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.34
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.27
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.27
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.25
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.25
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.21
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.15
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.13
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.04
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.93
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.92
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.88
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.88
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.87
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.81
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.73
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.7
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.64
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.63
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.61
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.6
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.59
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.58
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.56
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.54
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.53
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.49
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.49
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.44
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.37
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.36
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.32
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.26
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.25
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.24
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.24
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.23
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.21
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.21
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.21
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.17
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.16
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.15
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.15
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.14
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.14
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.14
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.13
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.11
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.08
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.07
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.06
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.05
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.04
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.04
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.03
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.02
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.01
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.94
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.91
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.89
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.84
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.83
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.82
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.82
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.81
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.75
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.73
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.71
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.68
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.66
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.65
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.64
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.64
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.61
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.6
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.59
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.58
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.54
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	94.54
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.45
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.43
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.41
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.4
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.34
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.28
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.21
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.13
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.13
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.1
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.07
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.06
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	93.97
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.88
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.88
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.8
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.77
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.68
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.64
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.61
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.41
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.36
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.17
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.05
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.96
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.93
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.66
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.42
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.34
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.16
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.12
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	91.38
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.32
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	91.03
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	90.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	90.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.54
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.31
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.69
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.47
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.28
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	88.56
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.01
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.88
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.82
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.73
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	87.28
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	86.28
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	86.11
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	85.78
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.66
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	85.45
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	83.25
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	83.2
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	82.95

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.1e-39  Score=285.25  Aligned_cols=248  Identities=14%  Similarity=0.125  Sum_probs=192.0

Q ss_pred             cccCcccchhhHHHHHHHHhc-CCCCeEEEEEeccCCcchhHHHHHHHHH----HhccccceEEEeechhhhcccCHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINK-GPTDVRMIGICGMGGIGKTTLARVVYDL----ISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      ....++||+.++++|..+|.. .+.+.++|+|+||||+||||||+++++.    ....|++++|+......+ ...+...
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~-~~~l~~~   96 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP-KSTFDLF   96 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST-THHHHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCC-HHHHHHH
Confidence            345678999999999999864 3445789999999999999999999987    445688899986432221 1222223


Q ss_pred             HHHHHHHHhCCCCCCC------cchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364          158 QKQLISQLLNLPDSGV------WNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHLL  231 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~  231 (373)
                      ...++...........      .........+...+.++++|+||||+|+...++.+...      |++||+|||+..++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~~------~srilvTTR~~~v~  170 (277)
T d2a5yb3          97 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQEL------RLRCLVTTRDVEIS  170 (277)
T ss_dssp             HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHT------TCEEEEEESBGGGG
T ss_pred             HHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhccc------CceEEEEeehHHHH
Confidence            3333333322221111      11222234567778999999999999999999877543      88999999999998


Q ss_pred             hhcCCC-ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 017364          232 MAHGVD-EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLGSFLFGRTIAEWESALQRLER  310 (373)
Q Consensus       232 ~~~~~~-~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~l~~l~~  310 (373)
                      ..+... ..|++++|+.+||++||+.+++..... +..++++++|+++|+|+||||+++|+.++.++...|.+..+.+..
T Consensus       171 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~  249 (277)
T d2a5yb3         171 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLES  249 (277)
T ss_dssp             GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHH
T ss_pred             HhcCCCCceEECCCCCHHHHHHHHHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhc
Confidence            876544 679999999999999999988765433 456788999999999999999999999999999999999998877


Q ss_pred             CCCchHHHHHHhchhCCchhhHHHHhhh
Q 017364          311 DPENEILDVLQISFDGLKETEKKIFLDI  338 (373)
Q Consensus       311 ~~~~~i~~~l~~s~~~L~~~~~~~l~~l  338 (373)
                      .....+..++..||+.||++.|.||.++
T Consensus       250 ~~~~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         250 RGLVGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             HCSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHHHHhcccHHHHHHHHhC
Confidence            7778889999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.57  E-value=5.8e-14  Score=121.34  Aligned_cols=195  Identities=14%  Similarity=0.179  Sum_probs=111.5

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechh-hhcccCHHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVRE-ISKKSGLVFLQKQ  160 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~  160 (373)
                      ..++.|+||+++++++.+..      .+.++|+|++|+|||+|+++++......+   .|+..... .........+...
T Consensus         9 ~~~~~f~GR~~el~~l~~~~------~~~i~i~G~~G~GKTsLl~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~   79 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGLR------APITLVLGLRRTGKSSIIKIGINELNLPY---IYLDLRKFEERNYISYKDFLLE   79 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHTC------SSEEEEEESTTSSHHHHHHHHHHHHTCCE---EEEEGGGGTTCSCCCHHHHHHH
T ss_pred             CChhhCCChHHHHHHHHhcc------CCEEEEEcCCCCcHHHHHHHHHHHCCCCe---EEEEeccccccccccHHHHHHH
Confidence            34678999999999987632      26789999999999999999988775433   22221111 1111222222222


Q ss_pred             HHHHH-------------hCC---------------CCCCCcchhhhHHHHHHhhCCCceEEEecccccHH---------
Q 017364          161 LISQL-------------LNL---------------PDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ---------  203 (373)
Q Consensus       161 ~~~~~-------------~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---------  203 (373)
                      +....             ...               .......+......+.+ ..++++++++|+++...         
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~i~id~~~~~~~~~~~~~~~  158 (283)
T d2fnaa2          80 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQ-ASKDNVIIVLDEAQELVKLRGVNLLP  158 (283)
T ss_dssp             HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHH-TCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred             HHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHh-hcccccccccchhhhhcccchHHHHH
Confidence            22111             000               00001112222222222 35778999999875321         


Q ss_pred             HHHHHhcCCCCCCCCcEEEEEeCChhhHhhc------------CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHH
Q 017364          204 QLESLAGKHDWFGIGSRIFITSRDKHLLMAH------------GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQL  271 (373)
Q Consensus       204 ~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~------------~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~  271 (373)
                      .+..+....    .....+++++........            .....+.|++++.+++.+++...........+    .
T Consensus       159 ~l~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~----~  230 (283)
T d2fnaa2         159 ALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK----D  230 (283)
T ss_dssp             HHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC----C
T ss_pred             HHHHHHHhh----hhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH----H
Confidence            122222221    244556665554332211            12356899999999999999776532222211    2


Q ss_pred             HHHHHHHhCCCchHHHHHHHHhc
Q 017364          272 SKSVVKYAGGLPLALKVLGSFLF  294 (373)
Q Consensus       272 ~~~i~~~~~g~Plal~~~~~~l~  294 (373)
                      .+++++.++|+|.+|..++..+.
T Consensus       231 ~~~i~~~~~G~P~~L~~~~~~~~  253 (283)
T d2fnaa2         231 YEVVYEKIGGIPGWLTYFGFIYL  253 (283)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHH
Confidence            57899999999999999987663

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.22  E-value=1e-09  Score=93.64  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=102.0

Q ss_pred             cccCcccchhhHHHHHHHHhc----CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINK----GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      .|..++||+.+++.+..+|.+    ....++.+.|+|++|+|||++++.+++.+.......+...+.   ..........
T Consensus        14 ~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~   90 (276)
T d1fnna2          14 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING---FIYRNFTAII   90 (276)
T ss_dssp             CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET---TTCCSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecc---hhhhhhhhhh
Confidence            345699999999999988863    223457899999999999999999999987665544433322   2233444455


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH-----HHHHHhcCCCC-CCCCcEEEEEeCChhh
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ-----QLESLAGKHDW-FGIGSRIFITSRDKHL  230 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-----~l~~l~~~~~~-~~~g~~iliTtR~~~~  230 (373)
                      ........................+...+  .....++++|++++..     ....+...... ......+|.++.....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (276)
T d1fnna2          91 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  170 (276)
T ss_dssp             HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             hhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhh
Confidence            55555543333333334444444444443  3455667777665421     12222211110 1123445555555433


Q ss_pred             Hhhc-------CCCceEeCCCCCHhHHHHHHHHhh
Q 017364          231 LMAH-------GVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       231 ~~~~-------~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ....       .....+.+.+++.++..+++..++
T Consensus       171 ~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~  205 (276)
T d1fnna2         171 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA  205 (276)
T ss_dssp             HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhcchhccccchhHHHHHHHHHHHH
Confidence            2211       123467899999999999987654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=5.1e-10  Score=94.16  Aligned_cols=153  Identities=12%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      +..+||+++++++...|.....  ..+.++|++|+|||+|+..+++++...      ....+|..+...+-.        
T Consensus        18 d~~igRd~Ei~~l~~iL~r~~k--~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~lia--------   87 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA--------   87 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C--------
T ss_pred             CcccChHHHHHHHHHHHhcCcc--CCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhc--------
Confidence            4589999999999999975543  567799999999999999999986532      234455543322111        


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh-CCCceEEEecccccH----------HHHHHHhcCCCCCCCCcEEEEEeCC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-RHKKVLLVIDDVIEL----------QQLESLAGKHDWFGIGSRIFITSRD  227 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~----------~~l~~l~~~~~~~~~g~~iliTtR~  227 (373)
                               . ......+...+..+...+ ..+++++++|+++..          ..+..++..+-. .+..++|.+|..
T Consensus        88 ---------g-~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~  156 (268)
T d1r6bx2          88 ---------G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY  156 (268)
T ss_dssp             ---------C-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred             ---------c-CccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCH
Confidence                     0 111223344343333333 456789999997532          234555544332 335678888887


Q ss_pred             hhhHhhcC-------CCceEeCCCCCHhHHHHHHHHhh
Q 017364          228 KHLLMAHG-------VDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       228 ~~~~~~~~-------~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      ........       ....+.+++++.+++..++....
T Consensus       157 eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         157 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhh
Confidence            76543322       23578999999999999987654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.08  E-value=6e-09  Score=89.31  Aligned_cols=193  Identities=15%  Similarity=0.094  Sum_probs=103.4

Q ss_pred             cccCcccchhhHHHHHHHHh----cCC--CC-eEEEEEeccCCcchhHHHHHHHHHHhccc-----c-ceEEEeechhhh
Q 017364           83 TLKELVGLDSRLEKLRFLIN----KGP--TD-VRMIGICGMGGIGKTTLARVVYDLISHEF-----E-ASCFLANVREIS  149 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~----~~~--~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~-~~~~~~~~~~~~  149 (373)
                      .|+.++||+.+++.|...+.    .+.  .. ..++.|+|++|+|||++++.+++.+....     . ...+..    ..
T Consensus        14 ~P~~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~----~~   89 (287)
T d1w5sa2          14 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF   89 (287)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeec----cc
Confidence            45789999999999987663    221  11 33567789999999999999999865331     1 112221    22


Q ss_pred             cccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhh--CCCceEEEecccccHH--------H---HHHH---hcCCC
Q 017364          150 KKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRL--RHKKVLLVIDDVIELQ--------Q---LESL---AGKHD  213 (373)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~--------~---l~~l---~~~~~  213 (373)
                      .................................+....  .+...++++|.++...        .   +..+   .....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~  169 (287)
T d1w5sa2          90 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD  169 (287)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred             cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhh
Confidence            23344444445555544433333334444444444433  4556778888764321        1   1111   11111


Q ss_pred             CCCCCcEEEEEeCChhhH--------hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 017364          214 WFGIGSRIFITSRDKHLL--------MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA  279 (373)
Q Consensus       214 ~~~~g~~iliTtR~~~~~--------~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  279 (373)
                      ....-..|++++......        ........+.+++++.++..+++..++-.........++..+.|++.+
T Consensus       170 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~  243 (287)
T d1w5sa2         170 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY  243 (287)
T ss_dssp             SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred             cccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHH
Confidence            111222333444333211        112234678999999999999998765211111112245566666655

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.7e-09  Score=88.61  Aligned_cols=179  Identities=15%  Similarity=0.165  Sum_probs=106.1

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      .-.++||.++.++.+..++..+.  .+.+.++||+|+||||+|+.+++.+... +...+...+.   +............
T Consensus        12 ~~~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~---~~~~~~~~~~~~~   86 (227)
T d1sxjc2          12 TLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDDRGIDVVRNQI   86 (227)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSCCSHHHHHTHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecc---cccCCeeeeecch
Confidence            34579999999999999998653  3457899999999999999999986433 2222222111   1112221111111


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH-hh-cCCC
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL-MA-HGVD  237 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~-~~-~~~~  237 (373)
                      .......                ....++.-++|+|+++..  .....++..+......+.++++|.+..-. .. ....
T Consensus        87 ~~~~~~~----------------~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~  150 (227)
T d1sxjc2          87 KDFASTR----------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC  150 (227)
T ss_dssp             HHHHHBC----------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred             hhccccc----------------cccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHH
Confidence            1110000                011334558899999643  22223332222223467777777765321 11 2244


Q ss_pred             ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       238 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      ..+.+.+++.++...++.+.+......  ...+..+.|++.++|...
T Consensus       151 ~~i~~~~~~~~~i~~~l~~I~~~e~i~--i~~~~l~~i~~~s~Gd~R  195 (227)
T d1sxjc2         151 TRFRFQPLPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMR  195 (227)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHH
T ss_pred             hhhcccccccccccccccccccccccc--CCHHHHHHHHHHcCCcHH
Confidence            678999999999999998776443222  224567889999998753

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=7.9e-10  Score=87.85  Aligned_cols=148  Identities=9%  Similarity=0.083  Sum_probs=89.9

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      +..+||+++++++...|.....  .-+.++|++|+|||+++..+++++...      ....+|..+...+-......   
T Consensus        22 d~~igRd~Ei~~l~~iL~r~~k--~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~r---   96 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRRTK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR---   96 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSSS--CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSH---
T ss_pred             CCCcCcHHHHHHHHHHHhccCC--CCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCcc---
Confidence            4589999999999999986543  567899999999999999999987532      23455654433221111111   


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHH-Hhh-CCCceEEEecccccHH---------HHHH-HhcCCCCCCCCcEEEEEeC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIR-SRL-RHKKVLLVIDDVIELQ---------QLES-LAGKHDWFGIGSRIFITSR  226 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l-~~~~~LlvlDdv~~~~---------~l~~-l~~~~~~~~~g~~iliTtR  226 (373)
                                     ..+.+.+..+. +.. ...+++|++|++...-         .+.. +.+.+.  ....++|.+|.
T Consensus        97 ---------------G~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT  159 (195)
T d1jbka_          97 ---------------GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATT  159 (195)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEEC
T ss_pred             ---------------HHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCC
Confidence                           11222222222 222 3457899999986431         1112 222221  12456888887


Q ss_pred             ChhhHhhc-------CCCceEeCCCCCHhHHHHHH
Q 017364          227 DKHLLMAH-------GVDEVYMHEHLNYDEALGLF  254 (373)
Q Consensus       227 ~~~~~~~~-------~~~~~~~l~~L~~~ea~~l~  254 (373)
                      ........       .....+.+++++.+++..++
T Consensus       160 ~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence            66544332       23467899999999887653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.8e-09  Score=88.28  Aligned_cols=184  Identities=14%  Similarity=0.163  Sum_probs=107.6

Q ss_pred             ccccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc-cceEEEeechhhhcccCHHHHHHH
Q 017364           82 ETLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF-EASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        82 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ..-.++||.+..++.+..++..+.  .+.+.++||+|+||||+|+.+++.+...+ ...++..+.   +...........
T Consensus        12 ~~~~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~---~~~~~~~~i~~~   86 (224)
T d1sxjb2          12 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA---SDDRGIDVVRNQ   86 (224)
T ss_dssp             SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT---TSCCSHHHHHTH
T ss_pred             CCHHHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHHHHhccccccccccccc---cccCCceehhhH
Confidence            344679999999999999998663  35578999999999999999998865432 222222222   222222222211


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--HHHHHhcCCCCCCCCcEEEEEeCChhh-Hhh-cCC
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--QLESLAGKHDWFGIGSRIFITSRDKHL-LMA-HGV  236 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~l~~l~~~~~~~~~g~~iliTtR~~~~-~~~-~~~  236 (373)
                      +.........               ...++.-++|+|+++...  ....+..........+.+++++.+..- ... ...
T Consensus        87 ~~~~~~~~~~---------------~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr  151 (224)
T d1sxjb2          87 IKHFAQKKLH---------------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ  151 (224)
T ss_dssp             HHHHHHBCCC---------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred             HHHHHHhhcc---------------CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHH
Confidence            1111100000               002345688899986432  212221111111235667777665432 111 124


Q ss_pred             CceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 017364          237 DEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALK  287 (373)
Q Consensus       237 ~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~  287 (373)
                      ...+.+.+++.++...++...+......  ...+..+.|++.++|.+...-
T Consensus       152 ~~~i~~~~~~~~~i~~~l~~i~~~e~~~--i~~~~l~~I~~~s~Gd~R~ai  200 (224)
T d1sxjb2         152 CAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAI  200 (224)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhhcccchhhhHHHHHHHHHhcccC--CCHHHHHHHHHHcCCcHHHHH
Confidence            4679999999999999988766332222  224568899999999876443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.3e-08  Score=85.04  Aligned_cols=193  Identities=16%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLI  162 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (373)
                      .-..++|.+..++.+..++..+. -++.+.|+|++|+||||+|+.+++.+.......  ..       ..........+.
T Consensus        10 ~~~dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~--~~-------~~~~~~~~~~i~   79 (239)
T d1njfa_          10 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--AT-------PCGVCDNCREIE   79 (239)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSC--SS-------CCSCSHHHHHHH
T ss_pred             CHHHccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCccccc--cC-------ccccchHHHHHH
Confidence            34579999999999999997652 235688999999999999999998764332100  00       000000000111


Q ss_pred             HHH----hCCCCCCCcchhhhHHHHHHhh-----CCCceEEEecccccH--HHHHHHhcCCCCCCCCcEEEEEeCChhhH
Q 017364          163 SQL----LNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIEL--QQLESLAGKHDWFGIGSRIFITSRDKHLL  231 (373)
Q Consensus       163 ~~~----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~g~~iliTtR~~~~~  231 (373)
                      ...    ...........+.... +.+.+     .++.-++|||+++..  .....|+..+.....++++|++|.+..-.
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~ir~-~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_          80 QGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             HTCCTTEEEEETTCSSSHHHHHH-HHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             cCCCCeEEEecchhcCCHHHHHH-HHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            000    0000000111111111 11111     234568999999753  33333333322223567788887765321


Q ss_pred             -hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch-HHHH
Q 017364          232 -MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL-ALKV  288 (373)
Q Consensus       232 -~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~  288 (373)
                       .. ......+.+.+++.++....+...+......  ...+..+.|++.++|.+. ||..
T Consensus       159 ~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~--~~~~~l~~i~~~s~Gd~R~ain~  216 (239)
T d1njfa_         159 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSL  216 (239)
T ss_dssp             CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHTTTCHHHHHHH
T ss_pred             ChhHhhhhcccccccCcHHHhhhHHHHHHhhhccC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence             11 1234688999999999998887765322222  234568889999999886 4443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.96  E-value=4.7e-09  Score=87.29  Aligned_cols=180  Identities=13%  Similarity=0.178  Sum_probs=103.4

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEEeechhhhcccCHHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE-FEASCFLANVREISKKSGLVFLQKQL  161 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~  161 (373)
                      .-..++|.+...+.+..++..+.  .+.+.|+||+|+||||+|+.+++.+... +.......+.....   .... ....
T Consensus        22 ~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~---~~~~-~~~~   95 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER---GINV-IREK   95 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH---HHHT-THHH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCccc---chhH-HHHH
Confidence            34679999999999999998763  3668899999999999999999876432 22222222221110   0000 0111


Q ss_pred             HHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCC
Q 017364          162 ISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVD  237 (373)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~  237 (373)
                      .......               ......++.++++|+++.  ......+............+|++|.... +.... ...
T Consensus        96 ~~~~~~~---------------~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~  160 (231)
T d1iqpa2          96 VKEFART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC  160 (231)
T ss_dssp             HHHHHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred             HHHHHhh---------------hhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcc
Confidence            1110000               001134567899999863  2222222222111122455666665442 21111 123


Q ss_pred             ceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          238 EVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       238 ~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      ..+.+.+.+..+....+.+.+......  ...+..+.|++.++|....
T Consensus       161 ~~i~~~~~~~~~~~~~l~~~~~~e~i~--i~~~~l~~I~~~~~gdiR~  206 (231)
T d1iqpa2         161 AIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRR  206 (231)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHH
T ss_pred             ccccccccchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHH
Confidence            578999999999999998877443321  2345678899999987543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=6.3e-09  Score=86.82  Aligned_cols=186  Identities=11%  Similarity=0.118  Sum_probs=104.7

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc--cceEEEeechhhhcccCHHHHHHH
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF--EASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      .-..++|.+...+.+..++..+.  .+.+.++||+|+||||+++.+++.+....  ....+..+.   +...........
T Consensus        10 ~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~   84 (237)
T d1sxjd2          10 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGISIVREK   84 (237)
T ss_dssp             STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCHHHHTTH
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheec---cccccchHHHHH
Confidence            44579999999999999997653  35588999999999999999998763321  111111111   111222221111


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH--H---HHHHhcCCCCCCCCcEEEEEeCChh-hHhhc
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ--Q---LESLAGKHDWFGIGSRIFITSRDKH-LLMAH  234 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~---l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~  234 (373)
                      + ..........     .....+......+.-++|+|+++...  .   +..+....   .....+++++.+.. .....
T Consensus        85 ~-~~~~~~~~~~-----~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~---~~~~~~i~~~~~~~~~~~~l  155 (237)
T d1sxjd2          85 V-KNFARLTVSK-----PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY---SGVTRFCLICNYVTRIIDPL  155 (237)
T ss_dssp             H-HHHHHSCCCC-----CCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHH
T ss_pred             H-HHHhhhhhhh-----hhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccc---cccccccccccccccccccc
Confidence            1 1111111000     00111222223444578999987432  2   22222222   23556666665542 11111


Q ss_pred             -CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          235 -GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       235 -~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                       .....+.+.+++.++...++...+......  ...+..+.|++.++|.+.
T Consensus       156 ~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~--i~~~~l~~ia~~s~gd~R  204 (237)
T d1sxjd2         156 ASQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLR  204 (237)
T ss_dssp             HHHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHH
T ss_pred             cchhhhhccccccccccchhhhhhhhhhcCc--CCHHHHHHHHHHcCCCHH
Confidence             122578999999999999998876543322  234668889999988654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=8.9e-09  Score=86.73  Aligned_cols=194  Identities=11%  Similarity=0.111  Sum_probs=97.8

Q ss_pred             cccCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcccc------ceEEEeec-----------
Q 017364           83 TLKELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFE------ASCFLANV-----------  145 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~-----------  145 (373)
                      .-..++|.++..+.+..++..+. ..+.+.|+||+|+||||+|+.+++.+.....      ...+....           
T Consensus         9 ~~~diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (252)
T d1sxje2           9 SLNALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS   87 (252)
T ss_dssp             SGGGCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred             CHHHccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhccC
Confidence            34579999999999888876542 2455789999999999999999987522110      00000000           


Q ss_pred             ------hhhhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH--HHHHHHhcCCCCCCC
Q 017364          146 ------REISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL--QQLESLAGKHDWFGI  217 (373)
Q Consensus       146 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~l~~l~~~~~~~~~  217 (373)
                            ...........................       ...-.....++.-++|+|+++..  .....+...+.....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~  160 (252)
T d1sxje2          88 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-------FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  160 (252)
T ss_dssp             SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             CccceeeecccccCCcceeeehhhhhhhhhhhh-------hhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence                  000000000011111111110000000       00001111234458889998752  222222222211234


Q ss_pred             CcEEEEEeCChhhH-hh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          218 GSRIFITSRDKHLL-MA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       218 g~~iliTtR~~~~~-~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      .+++|+||.+.... .. ......+++.+++.++..+++...+-...... ..++..+.|+..+.|.+..
T Consensus       161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~-~~~~~l~~i~~~s~Gd~R~  229 (252)
T d1sxje2         161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL-ETKDILKRIAQASNGNLRV  229 (252)
T ss_dssp             TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE-CCSHHHHHHHHHHTTCHHH
T ss_pred             cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCC-CcHHHHHHHHHHcCCcHHH
Confidence            67777777655311 11 11235789999999999999876652211111 1134578899999998754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=1e-08  Score=91.08  Aligned_cols=152  Identities=10%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc------ccceEEEeechhhhcccCHHHHH
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE------FEASCFLANVREISKKSGLVFLQ  158 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~  158 (373)
                      +..|||+.+++++...|.....  ..+.++|++|+|||+|+..+++++...      .+..+|..+...+-....     
T Consensus        22 d~~~gr~~ei~~~~~~L~r~~k--~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~-----   94 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRRTK--NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-----   94 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSSC--CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred             CCCcCcHHHHHHHHHHHhcCCC--CCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccC-----
Confidence            4589999999999999975433  346788999999999999999886432      234566654432211100     


Q ss_pred             HHHHHHHhCCCCCCCcchhhhHHHHHHhh-C-CCceEEEecccccHH---------HHHH-HhcCCCCCCCCcEEEEEeC
Q 017364          159 KQLISQLLNLPDSGVWNVYDGMNMIRSRL-R-HKKVLLVIDDVIELQ---------QLES-LAGKHDWFGIGSRIFITSR  226 (373)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~---------~l~~-l~~~~~~~~~g~~iliTtR  226 (373)
                                   ....+...+..+...+ . ..+++|++|+++..-         .... |.+.+.  .+..++|.+|.
T Consensus        95 -------------~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~--rg~~~~I~~tT  159 (387)
T d1qvra2          95 -------------YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATT  159 (387)
T ss_dssp             ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEEC
T ss_pred             -------------cchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh--CCCcceeeecC
Confidence                         0112222232222222 3 347899999986542         1111 222221  12456777777


Q ss_pred             ChhhHhh------cCCCceEeCCCCCHhHHHHHHHHhh
Q 017364          227 DKHLLMA------HGVDEVYMHEHLNYDEALGLFCLKA  258 (373)
Q Consensus       227 ~~~~~~~------~~~~~~~~l~~L~~~ea~~l~~~~~  258 (373)
                      .......      ......+.+++++.+++..++....
T Consensus       160 ~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~  197 (387)
T d1qvra2         160 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK  197 (387)
T ss_dssp             HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHH
Confidence            6654321      1234678999999999999987554

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.1e-07  Score=80.03  Aligned_cols=178  Identities=16%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             CcccchhhHHHHHHHHh----c-------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           86 ELVGLDSRLEKLRFLIN----K-------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~----~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .++|.+...+.|.+.+.    .       +-..++-+.++||+|+|||++++.+++.....    ++......+..... 
T Consensus         5 dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~----~~~i~~~~l~~~~~-   79 (258)
T d1e32a2           5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA-   79 (258)
T ss_dssp             GCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCE----EEEECHHHHTTSCT-
T ss_pred             hhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCe----EEEEEchhhccccc-
Confidence            47788888777776532    1       22234679999999999999999999865432    33322222111100 


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-------------HHHHH---hcCCCCCCCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-------------QLESL---AGKHDWFGIG  218 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~l~~l---~~~~~~~~~g  218 (373)
                                        ..........+...-...+++|++||++...             .+..+   .... ....+
T Consensus        80 ------------------g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~  140 (258)
T d1e32a2          80 ------------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-KQRAH  140 (258)
T ss_dssp             ------------------THHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTC-CCSSC
T ss_pred             ------------------ccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccc-cccCC
Confidence                              0011111222333335788999999996421             11111   1111 12335


Q ss_pred             cEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH-HHHHH
Q 017364          219 SRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA-LKVLG  290 (373)
Q Consensus       219 ~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~  290 (373)
                      .-||.||........     .+.+..+.++..+.++-.++|........... .  .....|++.+.|+-.+ |..+.
T Consensus       141 vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~-~--~~~~~la~~t~G~s~adl~~lv  215 (258)
T d1e32a2         141 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-D--VDLEQVANETHGHVGADLAALC  215 (258)
T ss_dssp             EEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCT-T--CCHHHHHHHCTTCCHHHHHHHH
T ss_pred             ccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCccccc-c--cchhhhhhcccCCCHHHHHHHH
Confidence            556668876643221     13567899999999999999987763322111 1  1256788899886544 44443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.83  E-value=8.7e-08  Score=78.09  Aligned_cols=171  Identities=16%  Similarity=0.108  Sum_probs=93.1

Q ss_pred             cccCcccchhh--HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           83 TLKELVGLDSR--LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        83 ~~~~~vGR~~~--~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      ....++|-..+  .+.+..+..........+.|+|++|+|||.|+..+++........++++...          .....
T Consensus         9 FdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~----------~~~~~   78 (213)
T d1l8qa2           9 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD----------DFAQA   78 (213)
T ss_dssp             SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH----------HHHHH
T ss_pred             hhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH----------HHHHH
Confidence            34456676554  3344444443322234478999999999999999999987666665555311          11112


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH---H----HHHHhcCCCCCCCCcEEEEEeCChh----
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ---Q----LESLAGKHDWFGIGSRIFITSRDKH----  229 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~----l~~l~~~~~~~~~g~~iliTtR~~~----  229 (373)
                      +...+..          .....+...+. ..-+|++||++...   .    +-.+.....  ..|..+|+||+...    
T Consensus        79 ~~~~~~~----------~~~~~~~~~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~--~~~~~iiits~~~p~~l~  145 (213)
T d1l8qa2          79 MVEHLKK----------GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLY--LLEKQIILASDRHPQKLD  145 (213)
T ss_dssp             HHHHHHH----------TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHH--HTTCEEEEEESSCGGGCT
T ss_pred             HHHHHHc----------cchhhHHHHHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHh--hccceEEEecCCcchhcc
Confidence            2111110          01112222222 24588999996431   2    222222211  23678999998653    


Q ss_pred             -----hHhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Q 017364          230 -----LLMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYA  279 (373)
Q Consensus       230 -----~~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  279 (373)
                           +...+.....+.++ ++.++..+++++.+-.....  -..++++-|++.+
T Consensus       146 ~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~--l~~~v~~yl~~~~  197 (213)
T d1l8qa2         146 GVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT  197 (213)
T ss_dssp             TSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC
T ss_pred             ccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhc
Confidence                 22334455677886 57777777877776332222  2235556666554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.7e-07  Score=76.00  Aligned_cols=178  Identities=12%  Similarity=0.067  Sum_probs=99.4

Q ss_pred             hhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHH-----
Q 017364           91 DSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQL-----  165 (373)
Q Consensus        91 ~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  165 (373)
                      +...+++...+..+. -++.+.++|++|+||||+|+.++..+-.......         ...........+....     
T Consensus         8 ~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~   77 (207)
T d1a5ta2           8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGH---------KSCGHCRGCQLMQAGTHPDYY   77 (207)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT---------BCCSCSHHHHHHHHTCCTTEE
T ss_pred             HHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHHhccccccccc---------ccccccchhhhhhhccccccc
Confidence            455777777777542 2356899999999999999999987642211000         0000000000000000     


Q ss_pred             --hCCCCCCCcchhhhHHHHHHhh-----CCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-
Q 017364          166 --LNLPDSGVWNVYDGMNMIRSRL-----RHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-  234 (373)
Q Consensus       166 --~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-  234 (373)
                        ...........+. +..+.+.+     .+++-++|+||++.  ......++..+.....++.+|+||++.. +...+ 
T Consensus        78 ~~~~~~~~~~i~~~~-ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~  156 (207)
T d1a5ta2          78 TLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR  156 (207)
T ss_dssp             EECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred             hhhhhhcccccccch-hhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhc
Confidence              0000001111121 12222222     34556899999974  3334444443333345788888888764 32222 


Q ss_pred             CCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHH
Q 017364          235 GVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLAL  286 (373)
Q Consensus       235 ~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  286 (373)
                      .....+.+.+++.++....+.....       ...+.+..+++.++|.|...
T Consensus       157 SRc~~i~~~~~~~~~~~~~L~~~~~-------~~~~~~~~i~~~s~Gs~r~a  201 (207)
T d1a5ta2         157 SRCRLHYLAPPPEQYAVTWLSREVT-------MSQDALLAALRLSAGSPGAA  201 (207)
T ss_dssp             TTSEEEECCCCCHHHHHHHHHHHCC-------CCHHHHHHHHHHTTTCHHHH
T ss_pred             ceeEEEecCCCCHHHHHHHHHHcCC-------CCHHHHHHHHHHcCCCHHHH
Confidence            2346899999999999999876541       12456888899999988654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.77  E-value=7.8e-08  Score=80.21  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=94.8

Q ss_pred             cCcccchhhHHHHHHHHh---c-------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhc-ccC
Q 017364           85 KELVGLDSRLEKLRFLIN---K-------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISK-KSG  153 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~---~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~  153 (373)
                      ..++|-+...+.|.+.+.   .       +...++-+.++||+|+|||+||+.+++....    .++..+...+.. ..+
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~~g   84 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMFVG   84 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHHHHHHSCTT
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCC----CEEEEEhHHhhhcccc
Confidence            468888877666554331   1       2223466899999999999999999986542    233322221111 000


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhc---CCCC
Q 017364          154 LVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAG---KHDW  214 (373)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~---~~~~  214 (373)
                                          .+...+...+...-...+++|+|||++...                .+..++.   .+. 
T Consensus        85 --------------------~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~-  143 (247)
T d1ixza_          85 --------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-  143 (247)
T ss_dssp             --------------------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-
T ss_pred             --------------------HHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC-
Confidence                                011111122233335678999999986321                1223322   222 


Q ss_pred             CCCCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          215 FGIGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       215 ~~~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      ...+.-||.||.....+..     ......+.+++++.++..++++..........   ......+++.|.|+.-
T Consensus       144 ~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~---~~~~~~la~~t~g~s~  215 (247)
T d1ixza_         144 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFVG  215 (247)
T ss_dssp             TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCCH
T ss_pred             CCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCcc---ccCHHHHHHHCCCCCH
Confidence            1223334446765443221     12456899999999999999987774322111   1114567777777644

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.6e-07  Score=78.55  Aligned_cols=175  Identities=14%  Similarity=0.123  Sum_probs=97.8

Q ss_pred             cCcccchhhHHHHHHHH---hc-------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           85 KELVGLDSRLEKLRFLI---NK-------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l---~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      ..++|.+...+.|.+.+   ..       +...++-+.++||+|+|||++|+.+++.....    ++..+...+...   
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~----~~~i~~~~l~~~---   84 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP----FFTISGSDFVEM---   84 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC----EEEECSCSSTTS---
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCC----EEEEEhHHhhhc---
Confidence            46888887766665433   21       12235678999999999999999999876432    222222111100   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccH----------------HHHHHHhcCCC--CCC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIEL----------------QQLESLAGKHD--WFG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~----------------~~l~~l~~~~~--~~~  216 (373)
                                ..      ..+...+...+...-...+++|++||++..                ..+..++....  ...
T Consensus        85 ----------~~------g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~  148 (256)
T d1lv7a_          85 ----------FV------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN  148 (256)
T ss_dssp             ----------CC------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred             ----------ch------hHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence                      00      011122222333344678899999998531                01222322111  112


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      .+..+|.||........     ......+.+++++.++-.++++....+.....   ......+++.+.|+.-+
T Consensus       149 ~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~---~~~~~~la~~t~G~s~a  219 (256)
T d1lv7a_         149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP---DIDAAIIARGTPGFSGA  219 (256)
T ss_dssp             SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCCHH
T ss_pred             CCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCc---ccCHHHHHHhCCCCCHH
Confidence            34556667776543221     12457899999999999999987764322111   11245677788886543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.74  E-value=2.5e-07  Score=77.09  Aligned_cols=50  Identities=14%  Similarity=0.075  Sum_probs=35.9

Q ss_pred             cCcccchhhHHHHHHHHh-------cC-CCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           85 KELVGLDSRLEKLRFLIN-------KG-PTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~-------~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +.+||+.+.++.+.+...       .. ...++-|.++||+|+|||++|+.+++....
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~   66 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF   66 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccc
Confidence            458888776665554332       22 223567999999999999999999987653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=2.9e-07  Score=76.50  Aligned_cols=174  Identities=16%  Similarity=0.133  Sum_probs=99.5

Q ss_pred             ccCcccchhhHHHHHHHHhcC---CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHH
Q 017364           84 LKELVGLDSRLEKLRFLINKG---PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQ  160 (373)
Q Consensus        84 ~~~~vGR~~~~~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  160 (373)
                      -+.+||.+..++.+..++...   ....+.+.++||+|+||||+|+.+++.+...+.   ... .   ........+ ..
T Consensus         8 ~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~---~~~-~---~~~~~~~~~-~~   79 (238)
T d1in4a2           8 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS-G---PVLVKQGDM-AA   79 (238)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE-T---TTCCSHHHH-HH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcc---ccc-C---cccccHHHH-HH
Confidence            367999999999998887532   222456889999999999999999987754321   111 1   111111111 11


Q ss_pred             HHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-----HHHHHhcCC---------------CCCCCCcE
Q 017364          161 LISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----QLESLAGKH---------------DWFGIGSR  220 (373)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~l~~l~~~~---------------~~~~~g~~  220 (373)
                      +                     +..  ..++..+++|+++...     .+.......               ....+...
T Consensus        80 ~---------------------~~~--~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (238)
T d1in4a2          80 I---------------------LTS--LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT  136 (238)
T ss_dssp             H---------------------HHH--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred             H---------------------HHh--hccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeE
Confidence            1                     111  2345667777765321     111111110               00112444


Q ss_pred             EEEEeCChhhH---hhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          221 IFITSRDKHLL---MAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       221 iliTtR~~~~~---~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      +|.+|.+....   ........+.+++.+.++...++..........  ...+....+++.++|.+..+..+.
T Consensus       137 ~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~i~~~s~gd~R~ai~~l  207 (238)
T d1in4a2         137 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLT  207 (238)
T ss_dssp             EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             EEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccch--hhHHHHHHHHHhCCCCHHHHHHHH
Confidence            55555554321   122345578899999999999988776433222  234568889999999877665443

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=8.1e-08  Score=81.17  Aligned_cols=174  Identities=14%  Similarity=0.089  Sum_probs=95.9

Q ss_pred             CcccchhhHHHHHHHHh-----------cCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCH
Q 017364           86 ELVGLDSRLEKLRFLIN-----------KGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGL  154 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~-----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  154 (373)
                      .++|.++..+.|...+.           .+-...+-+.++|++|+|||+||+.++....-.    ++......+...   
T Consensus         8 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~----~~~~~~~~l~~~---   80 (265)
T d1r7ra3           8 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPELLTM---   80 (265)
T ss_dssp             SCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCE----EEEECHHHHHTS---
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCc----EEEEEHHHhhhc---
Confidence            46677766555554332           122234678999999999999999999977533    333322221110   


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH----------------HHHHHhcCCCC--CC
Q 017364          155 VFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ----------------QLESLAGKHDW--FG  216 (373)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~l~~l~~~~~~--~~  216 (373)
                                    ..  ......+...+...-...+++|+|||++...                .+..++..+..  ..
T Consensus        81 --------------~~--~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~  144 (265)
T d1r7ra3          81 --------------WF--GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK  144 (265)
T ss_dssp             --------------CT--TTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----
T ss_pred             --------------cc--cchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCC
Confidence                          00  0011112222333335678999999986311                13344444421  12


Q ss_pred             CCcEEEEEeCChhhHhh-----cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchH
Q 017364          217 IGSRIFITSRDKHLLMA-----HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLA  285 (373)
Q Consensus       217 ~g~~iliTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  285 (373)
                      .+.-+|.||........     ......+++++.+.++-.++|+..........   .....++++.+.|+..+
T Consensus       145 ~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~g~s~~  215 (265)
T d1r7ra3         145 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK---DVDLEFLAKMTNGFSGA  215 (265)
T ss_dssp             -CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-------CCCCHHHHHHHCSSCCH
T ss_pred             CCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchh---hhhHHHHHhcCCCCCHH
Confidence            34556667765543211     12456899999999999999987653311111   11246778888876544

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=6.7e-08  Score=81.25  Aligned_cols=187  Identities=15%  Similarity=0.121  Sum_probs=97.7

Q ss_pred             cccCcccchhhHHHHHHHHhc---------------CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechh
Q 017364           83 TLKELVGLDSRLEKLRFLINK---------------GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVRE  147 (373)
Q Consensus        83 ~~~~~vGR~~~~~~l~~~l~~---------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~  147 (373)
                      .-..++|.+..+++|..++..               +....+.+.++||+|+||||+|+.+++.+...   .+++ +.. 
T Consensus        12 ~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~---~~~~-~~~-   86 (253)
T d1sxja2          12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD---ILEQ-NAS-   86 (253)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE---EEEE-CTT-
T ss_pred             CHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhh---hhcc-ccc-
Confidence            346799999999999888753               12234689999999999999999999876432   2222 221 


Q ss_pred             hhcccCHHHHHHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-----HHHHHhcCCCCCCCCcEEE
Q 017364          148 ISKKSGLVFLQKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----QLESLAGKHDWFGIGSRIF  222 (373)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~l~~l~~~~~~~~~g~~il  222 (373)
                        ...... ................ .....  .........+..++++|+++...     .+..+......  ....++
T Consensus        87 --~~~~~~-~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~--~~~~ii  158 (253)
T d1sxja2          87 --DVRSKT-LLNAGVKNALDNMSVV-GYFKH--NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI  158 (253)
T ss_dssp             --SCCCHH-HHHHTGGGGTTBCCST-TTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred             --cchhhH-HHHHHHHHHhhcchhh-hhhhh--hhhcccccccceEEEeeeccccccchhhhhHHHhhhhcc--cccccc
Confidence              111111 1111111111111000 00000  00111124566788999875321     12222211110  122344


Q ss_pred             EEeCCh--hhHhh-cCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCch
Q 017364          223 ITSRDK--HLLMA-HGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPL  284 (373)
Q Consensus       223 iTtR~~--~~~~~-~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  284 (373)
                      +|+.+.  ..... ......+.+.+++.++-...+...........  ..+....|++.++|...
T Consensus       159 ~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i--~~~~l~~i~~~s~GDiR  221 (253)
T d1sxja2         159 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIR  221 (253)
T ss_dssp             EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHH
T ss_pred             cccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCC--CHHHHHHHHHhCCCcHH
Confidence            444322  12222 22446899999999999998877653211111  12357889999999763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.63  E-value=8.1e-07  Score=73.72  Aligned_cols=178  Identities=17%  Similarity=0.088  Sum_probs=98.7

Q ss_pred             cccccCcccchhhHHHHHHHHhc---CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHH
Q 017364           81 SETLKELVGLDSRLEKLRFLINK---GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFL  157 (373)
Q Consensus        81 ~~~~~~~vGR~~~~~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  157 (373)
                      |..-+.+||-++..+.+..++..   ....++-+.++||+|+||||+|+.+++.....+   .+.. ...   ...    
T Consensus         5 P~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~---~~~~-~~~---~~~----   73 (239)
T d1ixsb2           5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA---IEK----   73 (239)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCE---EEEE-TTT---CCS----
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCe---Eecc-CCc---ccc----
Confidence            33345799999888888887763   222356788999999999999999998764331   1111 110   011    


Q ss_pred             HHHHHHHHhCCCCCCCcchhhhHHHHHHhhCCCceEEEecccccHH-----HHHHHhcC-----CC----------CCCC
Q 017364          158 QKQLISQLLNLPDSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQ-----QLESLAGK-----HD----------WFGI  217 (373)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~l~~l~~~-----~~----------~~~~  217 (373)
                                        .......+...+. .+.++++|+++...     .+......     ..          ...+
T Consensus        74 ------------------~~~~~~~~~~~~~-~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~  134 (239)
T d1ixsb2          74 ------------------PGDLAAILANSLE-EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP  134 (239)
T ss_dssp             ------------------HHHHHHHHHTTCC-TTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECC
T ss_pred             ------------------chhhHHHHHhhcc-CCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCC
Confidence                              1111111222222 33466778775321     11111100     00          0012


Q ss_pred             CcEEEEEeCCh-hh--HhhcCCCceEeCCCCCHhHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 017364          218 GSRIFITSRDK-HL--LMAHGVDEVYMHEHLNYDEALGLFCLKAFKSHKPWKGYEQLSKSVVKYAGGLPLALKVLG  290 (373)
Q Consensus       218 g~~iliTtR~~-~~--~~~~~~~~~~~l~~L~~~ea~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  290 (373)
                      ...++.++-+. ..  .........+.+.+.+.++....+..........  ...+....|++.++|.+.....+.
T Consensus       135 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~--~~~~~l~~ia~~s~gd~R~a~~~l  208 (239)
T d1ixsb2         135 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLF  208 (239)
T ss_dssp             CCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCC--BCHHHHHHHHHHTTSSHHHHHHHH
T ss_pred             CEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCc--cchHHHHHHHHHcCCCHHHHHHHH
Confidence            23344444332 11  1122245678899999999998887666433222  335678999999999876664443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.07  E-value=1.4e-06  Score=71.36  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.+..-.++.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~   59 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPT   59 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCC
Confidence            789999999999999999999755443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.04  E-value=2.9e-05  Score=61.85  Aligned_cols=130  Identities=13%  Similarity=-0.011  Sum_probs=71.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc---ccceEEEeechhhhcccCHHHHHHHHHHHHhCCC
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE---FEASCFLANVREISKKSGLVFLQKQLISQLLNLP  169 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (373)
                      +++.+..++..+.  .+.+.++|++|+|||++|..+.+.+...   .+..+++..   ......... .+.+...+... 
T Consensus         2 ~~~~l~~~i~~~~--~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~---~~~~I~Id~-IR~i~~~~~~~-   74 (198)
T d2gnoa2           2 QLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP---EGENIGIDD-IRTIKDFLNYS-   74 (198)
T ss_dssp             HHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC---SSSCBCHHH-HHHHHHHHTSC-
T ss_pred             HHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC---CcCCCCHHH-HHHHHHHHhhC-
Confidence            5677778887653  4899999999999999999999876432   223444321   001112222 22233222111 


Q ss_pred             CCCCcchhhhHHHHHHhhCCCceEEEeccccc--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hHhhc-CCCceEeCCCC
Q 017364          170 DSGVWNVYDGMNMIRSRLRHKKVLLVIDDVIE--LQQLESLAGKHDWFGIGSRIFITSRDKH-LLMAH-GVDEVYMHEHL  245 (373)
Q Consensus       170 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~l~~l~~~~~~~~~g~~iliTtR~~~-~~~~~-~~~~~~~l~~L  245 (373)
                      +                ..+++=++|+|+++.  ......++..+.....++.+|++|.+.. +.... .....+.+.+.
T Consensus        75 ~----------------~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p  138 (198)
T d2gnoa2          75 P----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVP  138 (198)
T ss_dssp             C----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred             c----------------ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCc
Confidence            1                123445889999974  3444444443333345777777777654 22222 12345666643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.04  E-value=2.7e-05  Score=60.81  Aligned_cols=27  Identities=33%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      .|+|+|++|+|||||++.++..+....
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~   28 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCc
Confidence            389999999999999999999887653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.03  E-value=4.2e-07  Score=74.90  Aligned_cols=40  Identities=35%  Similarity=0.605  Sum_probs=29.3

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..++.+...+.++    .+++|.|++|+|||||.+.++..+.+.
T Consensus        16 ~vl~~vs~~v~~G----ei~glvG~nGaGKSTLl~~l~G~~~p~   55 (238)
T d1vpla_          16 EILKGISFEIEEG----EIFGLIGPNGAGKTTTLRIISTLIKPS   55 (238)
T ss_dssp             EEEEEEEEEECTT----CEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             EEEccceeEEcCC----CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            3344444444455    789999999999999999999865443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.00  E-value=0.00013  Score=60.23  Aligned_cols=46  Identities=26%  Similarity=0.304  Sum_probs=35.6

Q ss_pred             CcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           86 ELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|||....++++...+..-......|.|.|+.|+|||++|+.+...
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            4889888888888777643222244789999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.99  E-value=2.7e-06  Score=70.06  Aligned_cols=38  Identities=21%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.+..-+++
T Consensus        21 al~~vs~~i~~G----ei~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          21 AIKGIDLKVPRG----QIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             EEEEEEEEEETT----CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EEeeeeEEECCC----CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            344444445555    78999999999999999999975443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.96  E-value=1.8e-06  Score=70.69  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-..+
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~p   55 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEEP   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            78999999999999999999875443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=6.5e-06  Score=67.34  Aligned_cols=26  Identities=38%  Similarity=0.561  Sum_probs=22.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.+..-.++
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p   57 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERP   57 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccc
Confidence            78999999999999999999875443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2.7e-06  Score=69.25  Aligned_cols=25  Identities=32%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|.|++|+|||||++.++.-.+
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            7899999999999999999987443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.92  E-value=2.5e-06  Score=69.80  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             HHHHHhhCCCceEEEeccc------ccHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          181 NMIRSRLRHKKVLLVIDDV------IELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       181 ~~l~~~l~~~~~LlvlDdv------~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      -.+.+.+-.++-+|++|+.      .....+..++..+.. ..|..+|++||+...+..+ ++.++-+
T Consensus       149 vaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~-~~g~tvi~vTHd~~~~~~~-~dri~vm  214 (242)
T d1oxxk2         149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-RLGVTLLVVSHDPADIFAI-ADRVGVL  214 (242)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHHH-CSEEEEE
T ss_pred             HHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHh-ccCCEEEEEECCHHHHHHh-CCEEEEE
Confidence            3567777888999999964      333333333332210 1266799999998766554 4444444

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.89  E-value=4.6e-06  Score=69.30  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .++.+...+..+    .+++|.|++|+|||||++.+..-.++
T Consensus        17 al~~vs~~i~~G----Ei~~iiG~sGsGKSTLl~~i~Gl~~p   54 (258)
T d1b0ua_          17 VLKGVSLQARAG----DVISIIGSSGSGKSTFLRCINFLEKP   54 (258)
T ss_dssp             EEEEEEEEECTT----CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEcceeeEEcCC----CEEEEECCCCCcHHHHHHHHHcCccC
Confidence            344444444455    78999999999999999999875443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.88  E-value=2.5e-06  Score=69.34  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.+..-..+.
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p~   53 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVPD   53 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence            789999999999999999999754443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.86  E-value=2.4e-06  Score=70.97  Aligned_cols=37  Identities=24%  Similarity=0.516  Sum_probs=27.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    ..++|+|++|+|||||++.++.-+.+
T Consensus        31 L~~isl~i~~G----e~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          31 LRNINLKIPAG----KTVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             EEEEEEEECTT----CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             eeceEEEEcCC----CEEEEECCCCChHHHHHHHHhcccCC
Confidence            34444344445    78999999999999999999875543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=3.6e-05  Score=64.71  Aligned_cols=27  Identities=30%  Similarity=0.494  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|+|++|+|||||++.++..+.+.
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p~   89 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEAS   89 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcCC
Confidence            789999999999999999999865543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.85  E-value=9.3e-06  Score=66.00  Aligned_cols=60  Identities=12%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             HHHHHHhhCCCceEEEecccc------cHHHHHHHhcCCCCCCCCcEEEEEeCChhhHhhcCCCceEeC
Q 017364          180 MNMIRSRLRHKKVLLVIDDVI------ELQQLESLAGKHDWFGIGSRIFITSRDKHLLMAHGVDEVYMH  242 (373)
Q Consensus       180 ~~~l~~~l~~~~~LlvlDdv~------~~~~l~~l~~~~~~~~~g~~iliTtR~~~~~~~~~~~~~~~l  242 (373)
                      .-.+.+.+-.+|-+|++|+.-      +...+-.++..+. ...|..||++||+..++. + +++++.+
T Consensus       153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~-~~~g~tii~vTHd~~~a~-~-~drv~~m  218 (230)
T d1l2ta_         153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN-EEDGKTVVVVTHDINVAR-F-GERIIYL  218 (230)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-HTTCCEEEEECSCHHHHT-T-SSEEEEE
T ss_pred             HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHH-HhhCCEEEEECCCHHHHH-h-CCEEEEE
Confidence            335666777888899999652      2222222222221 023777999999988763 3 5666554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=8.9e-05  Score=59.14  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=27.6

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+.+++++|++|+||||.+..++.++......+..+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li   43 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA   43 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4468999999999999998877787776543333333

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.82  E-value=1.7e-06  Score=70.66  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+++|.|++|+|||||++.++.-+.+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCC
Confidence            47889999999999999999986544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=1.5e-05  Score=65.44  Aligned_cols=36  Identities=31%  Similarity=0.635  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +.+.-.+.++    ..++|+|++|+|||||++.+..-+.+
T Consensus        20 ~~isl~i~~G----e~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          20 DNINLSIKQG----EVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             EEEEEEEETT----CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             eeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            3333334455    78999999999999999999875543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00037  Score=59.58  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=37.4

Q ss_pred             cCcccchhhHHHHHHHHh---c---CCCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLIN---K---GPTD-VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~---~---~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ...+|-+..++.+...+.   .   .... ..++.++||+|+|||.||+.++..+.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc
Confidence            468898888888876663   1   1122 35788999999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.78  E-value=1.6e-05  Score=65.35  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    ..++|+|++|+|||||++.+..-+.+
T Consensus        18 L~~isl~i~~G----e~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          18 LRDISFEAQPN----SIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEEEEECTT----EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             eeeeEEEEcCC----CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            33344334445    88999999999999999999875543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=9.9e-06  Score=67.05  Aligned_cols=37  Identities=30%  Similarity=0.552  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      ++.+.-.+.++    ..++|+|++|+|||||++.+..-+.+
T Consensus        30 L~~isl~i~~G----e~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          30 LQGLTFTLRPG----EVTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             EEEEEEEECTT----CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             EeceEEEEcCC----CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            34444444455    78999999999999999999875443

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.76  E-value=8.8e-06  Score=67.57  Aligned_cols=39  Identities=31%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.+...+.++    .+++|.|++|+|||||++.++..+.+.
T Consensus        19 aL~~vs~~v~~G----ei~~liG~nGaGKSTLl~~i~Gl~~p~   57 (254)
T d1g6ha_          19 ALDGVSISVNKG----DVTLIIGPNGSGKSTLINVITGFLKAD   57 (254)
T ss_dssp             EEEEECCEEETT----CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             EEcceEEEECCC----CEEEEECCCCCcHHHHHHHHHCCCcCC
Confidence            344444445555    789999999999999999999865544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=3.5e-05  Score=61.19  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          104 GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       104 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ...++-+|+|.|++|+||||||+.+...+..........
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~   56 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceec
Confidence            344567899999999999999999998877654444333

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.65  E-value=0.00015  Score=57.83  Aligned_cols=36  Identities=22%  Similarity=0.192  Sum_probs=27.4

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+++.++|++|+||||.+..++..+..+...+..+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~li   44 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV   44 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            348899999999999998888887776554444444

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=2.1e-05  Score=60.85  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=26.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFE  137 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~  137 (373)
                      .++++|+|++|+|||||++.++..+..+.-
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~   31 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGI   31 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence            378999999999999999999998776543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.9e-05  Score=64.52  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+++|.|++|+|||||.+.++..
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            78999999999999999999873

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.62  E-value=2.8e-05  Score=60.74  Aligned_cols=30  Identities=20%  Similarity=0.140  Sum_probs=26.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFE  137 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~  137 (373)
                      ..+|.|+|++|+||||+|+.++.++...+-
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            478999999999999999999999865543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.60  E-value=3.8e-06  Score=69.66  Aligned_cols=36  Identities=31%  Similarity=0.573  Sum_probs=26.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+.-.+.++    ..++|+|++|+|||||++.+..-+.
T Consensus        34 L~~isl~i~~G----e~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          34 LKDINLSIEKG----ETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEEEEECTT----CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             eeceEEEEcCC----CEEEEECCCCCcHHHHHHHHHhcCC
Confidence            34444444455    7899999999999999998876443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=1.6e-05  Score=62.59  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.|+|.|++|+||||||+.++..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47899999999999999999998653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.8e-05  Score=62.17  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      +.|.|+|++|+|||||++.++..+..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            5689999999999999999999876553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=0.00012  Score=58.64  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             CCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          105 PTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       105 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      +..+.+++++|++|+||||-+..++.++..+...+..+.
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit   46 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA   46 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence            445689999999999999977777777665544455443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.54  E-value=0.00018  Score=57.44  Aligned_cols=37  Identities=19%  Similarity=0.123  Sum_probs=23.8

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+.++.++|++|+||||.+..++..++.....+..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li   46 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLV   46 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEE
Confidence            3468999999999999998777777766544444444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.51  E-value=0.00014  Score=57.82  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=27.9

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+++.++|++|+||||.+..++..+..+...+.++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~li   40 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC   40 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            458899999999999998877787776554455554

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.1e-05  Score=60.47  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.|.|+|++|+||||+|+.++.++.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588899999999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.47  E-value=6.5e-05  Score=62.90  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.4

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      .+..|.++||+|+||||||+.++..+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            3677999999999999999999987653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.5e-05  Score=61.09  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=28.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+|.|+|++|+||||+|+.++..+...+....++
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~   53 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   53 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccch
Confidence            46888999999999999999999887665554444

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.43  E-value=3.8e-05  Score=58.22  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++|.|+|++|+||||||+.+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999988654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.42  E-value=3.5e-05  Score=59.68  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|.|.|++|+||||+|+.++..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            6799999999999999999987643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.39  E-value=3.1e-05  Score=59.98  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.|+|+|++|+||||+|+.+++++.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4588999999999999999998763

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=6.3e-05  Score=58.15  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=24.1

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++++|.|++|+||||+|+.++.++.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            358999999999999999999998764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=0.00052  Score=58.55  Aligned_cols=49  Identities=27%  Similarity=0.411  Sum_probs=36.3

Q ss_pred             cCcccchhhHHHHHHHHhc------CCCC-eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINK------GPTD-VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~------~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++|.+..++.+...+..      .... ..++.++||+|+|||.||+.++..+-
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhc
Confidence            3578888887777665531      1222 34788999999999999999999873

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.32  E-value=7.3e-05  Score=59.28  Aligned_cols=26  Identities=19%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+.+|+|.|++|+||||+|+.+++.+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.31  E-value=0.00024  Score=60.39  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      .++.++|++|+|||.||+.++..+..++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~  151 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKD  151 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTS
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCC
Confidence            4566799999999999999999876443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.31  E-value=9.1e-05  Score=58.02  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=26.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEA  138 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~  138 (373)
                      ++|+|.|++|+||||+++.+...+......
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~   31 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN   31 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence            689999999999999999999988765433

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.30  E-value=5.1e-05  Score=58.97  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|.|.|++|+||||+|+.+++.+.
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            7899999999999999999998764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=9.5e-05  Score=56.94  Aligned_cols=33  Identities=21%  Similarity=0.033  Sum_probs=27.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ++++|+|..|+|||||+..+...++.+...+.-
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~v   34 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT   34 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            688999999999999999999998866433333

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=5.9e-05  Score=58.17  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             EEEeccCCcchhHHHHHHHHHHhc
Q 017364          111 IGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      |++.|++|+||||+++.++.++.-
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            556699999999999999988753

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.23  E-value=0.00014  Score=62.26  Aligned_cols=48  Identities=21%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             CcccchhhHHHHHHHHh-----cC-------CCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           86 ELVGLDSRLEKLRFLIN-----KG-------PTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        86 ~~vGR~~~~~~l~~~l~-----~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..+|-++..+.+...+.     .+       ...++.+.++||+|+|||.||+.+++...
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc
Confidence            57788877777765441     00       01135678999999999999999998764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00011  Score=58.30  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=23.9

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +..++|+|.|++|+||||+|+.+++.+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            346899999999999999999998854

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.13  E-value=0.00011  Score=56.81  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ...|+|.|++|+||||+++.++.++
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.12  E-value=0.00012  Score=56.15  Aligned_cols=23  Identities=39%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             EEEeccCCcchhHHHHHHHHHHh
Q 017364          111 IGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      |+|.|++|+||||+++.++..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            77889999999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.12  E-value=7.2e-05  Score=58.05  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .++|+|.|++|+||||+|+.++.+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            388999999999999999988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.08  E-value=0.00047  Score=58.94  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ...+...+.+...+..+|+|.|++|+|||||...+...+..+
T Consensus        37 ~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~   78 (323)
T d2qm8a1          37 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA   78 (323)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhc
Confidence            444555555555567999999999999999999999876543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.07  E-value=0.00027  Score=55.45  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=26.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS  139 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~  139 (373)
                      ++++|.|++|+||||+++.++..+.......
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~   32 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN   32 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence            6789999999999999999999887554333

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.00024  Score=56.77  Aligned_cols=28  Identities=18%  Similarity=0.307  Sum_probs=24.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +-+|.++|.+|+||||||+.++..+...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3678999999999999999999876543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=57.15  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=22.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +.+|+|.|++|+||||+|+.+++.+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00014  Score=58.88  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=23.4

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++|+|.||+|+||||+|+.+++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            37999999999999999999998764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.06  E-value=0.00012  Score=56.62  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHh
Q 017364          110 MIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .|.|.|++|+||||+++.+++++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999998774

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00046  Score=59.07  Aligned_cols=47  Identities=21%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364           95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus        95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ..+...+.+.+.+..+|+|+|++|+|||||...+...+......+..
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav   87 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV   87 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence            34444444445567999999999999999999999887765443333

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.05  E-value=5.8e-05  Score=60.10  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .+++|.|++|+|||||++.++..+++.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~~p~   54 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYLKPL   54 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred             CEEEEECCCCChHHHHHHHHhcccccC
Confidence            789999999999999999999865543

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.00063  Score=56.34  Aligned_cols=87  Identities=20%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             CCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCC-----Ccchhh
Q 017364          104 GPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSG-----VWNVYD  178 (373)
Q Consensus       104 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  178 (373)
                      +-...+++-|+|++|+||||||..++.........++|+..-..    ... ..    +..+ +...+.     ..+.++
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~----~~~-e~----a~~~-GvD~d~il~~~~~~~E~  125 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA----LDP-DY----AKKL-GVDTDSLLVSQPDTGEQ  125 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC----CCH-HH----HHHH-TCCGGGCEEECCSSHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc----CCH-HH----HHHh-CCCHHHeEEecCCCHHH
Confidence            33345899999999999999999988877766677788752111    111 12    2222 221111     123444


Q ss_pred             hHHHHHHhhC-CCceEEEecccc
Q 017364          179 GMNMIRSRLR-HKKVLLVIDDVI  200 (373)
Q Consensus       179 ~~~~l~~~l~-~~~~LlvlDdv~  200 (373)
                      ....+...+. +...|+|+|.+.
T Consensus       126 ~~~~~~~l~~~~~~~liIiDSi~  148 (269)
T d1mo6a1         126 ALEIADMLIRSGALDIVVIDSVA  148 (269)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECST
T ss_pred             HHHHHHHHHhcCCCCEEEEeccc
Confidence            4444444443 456789999763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00014  Score=56.41  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.5

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHH
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..+.+|.++|++|+||||+|+.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3468999999999999999988754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00033  Score=58.02  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      .+++-|+|++|+||||||..++.........++|+.
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            379999999999999999999988776666777775

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.00  E-value=0.00016  Score=56.99  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=22.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +..|+|.|++|+||||+|+.+++.+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999998865

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.91  E-value=0.0004  Score=55.52  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..+|.++|++|+||||||+.+...+...
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l~~~   51 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQLVRD   51 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999877543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00021  Score=56.18  Aligned_cols=31  Identities=35%  Similarity=0.490  Sum_probs=24.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS  139 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~  139 (373)
                      +.|+|+||+|+|||||++.++++....|...
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~   32 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFS   32 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEEC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEE
Confidence            4488999999999999999988765554433

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00021  Score=56.35  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=22.5

Q ss_pred             EEEeccCCcchhHHHHHHHHHHhccc
Q 017364          111 IGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      |+|.||+|+|||||++.++......|
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~   28 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIF   28 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCce
Confidence            77999999999999999998765544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00033  Score=56.23  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +-+|+|.|+.|+||||||+.+...+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            468999999999999999999987654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.85  E-value=0.0013  Score=58.14  Aligned_cols=119  Identities=14%  Similarity=0.137  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS  171 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (373)
                      ..++.+..++....   ..|.|.|+.|+||||.+..+.+.+......++-+.+.-+..-. ...            ....
T Consensus       145 ~~~~~l~~l~~~~~---GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~-~~~------------q~~v  208 (401)
T d1p9ra_         145 HNHDNFRRLIKRPH---GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDID-GIG------------QTQV  208 (401)
T ss_dssp             HHHHHHHHHHTSSS---EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCS-SSE------------EEEC
T ss_pred             HHHHHHHHHHhhhh---ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccC-CCC------------eeee
Confidence            34566666665433   8999999999999999999998775433333333322111000 000            0000


Q ss_pred             CCcchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364          172 GVWNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKH  229 (373)
Q Consensus       172 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~  229 (373)
                      ...........++..++..+-+|++.++.+.+........-.   .|..|+.|-+..+
T Consensus       209 ~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ta~~a~~aa~---tGhlV~tTlHa~~  263 (401)
T d1p9ra_         209 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL---TGHLVMSTLHTNT  263 (401)
T ss_dssp             BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH---TTCEEEEEECCSS
T ss_pred             cCCcCCCHHHHHHHHHhhcCCEEEecCcCChHHHHHHHHHHh---cCCeEEEEeccCc
Confidence            011122345667888888899999999988776655543321   2666777777654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.84  E-value=0.00037  Score=54.83  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=20.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++| |.|++|+||||+|+.+++++
T Consensus         4 ~rii-l~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           4 VRAV-LLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             cEEE-EECCCCCCHHHHHHHHHHHh
Confidence            4555 78999999999999998865

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00027  Score=54.99  Aligned_cols=31  Identities=13%  Similarity=0.343  Sum_probs=25.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccce
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEAS  139 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~  139 (373)
                      +.|+|+||+|+|||||++.++.+....|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~   34 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYP   34 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeec
Confidence            5789999999999999999988765555433

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.80  E-value=0.00035  Score=54.45  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+|+.++..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37799999999999999998865

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.78  E-value=0.00077  Score=55.83  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=49.8

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCC-----CCcchhhhHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDS-----GVWNVYDGMNM  182 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  182 (373)
                      .+++-|+|++|+|||+||..++.........++|+..-.    .... .    .+..+ +....     ...+.++....
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~----~~~~-~----~a~~~-Gvd~d~i~~~~~~~~E~~~~~  126 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH----ALDP-V----YARAL-GVNTDELLVSQPDNGEQALEI  126 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC----CCCH-H----HHHHT-TCCGGGCEEECCSSHHHHHHH
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc----cCCH-H----HHHHh-CCCchhEEEEcCCCHHHHHHH
Confidence            479999999999999999999988766656677775211    1111 1    22222 22211     12344555555


Q ss_pred             HHHhhCC-CceEEEeccc
Q 017364          183 IRSRLRH-KKVLLVIDDV  199 (373)
Q Consensus       183 l~~~l~~-~~~LlvlDdv  199 (373)
                      +...+.. ..-|+|+|-+
T Consensus       127 ~~~l~~~~~~~liIiDSi  144 (268)
T d1xp8a1         127 MELLVRSGAIDVVVVDSV  144 (268)
T ss_dssp             HHHHHTTTCCSEEEEECT
T ss_pred             HHHHHhcCCCcEEEEecc
Confidence            5555443 4568889966

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.77  E-value=0.00036  Score=56.30  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      -+|+|.||+|+||||+|+.++..+.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3588999999999999999998763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.76  E-value=0.00061  Score=55.69  Aligned_cols=36  Identities=25%  Similarity=0.239  Sum_probs=31.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ..++.|+|++|+|||+||.+++.........++|+.
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            378999999999999999999998877777777764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.74  E-value=0.00037  Score=55.05  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=22.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ++|.|.|++|+||||+|+.+++.+
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            889999999999999999998854

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.73  E-value=0.0004  Score=54.64  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .-.|+|.|++|+||||+|+.++.++
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH
Confidence            3457788999999999999998854

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.72  E-value=0.00043  Score=53.99  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+|+.++..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.71  E-value=0.00045  Score=53.84  Aligned_cols=23  Identities=26%  Similarity=0.262  Sum_probs=20.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+|+.+++.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999999876

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.69  E-value=0.00082  Score=58.36  Aligned_cols=34  Identities=26%  Similarity=0.164  Sum_probs=27.7

Q ss_pred             HhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          101 INKGPTDVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       101 l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +..+....+.+.++||+|+|||++|..+++.+..
T Consensus       147 ~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         147 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             HHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3345555678999999999999999999997754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.69  E-value=0.00078  Score=56.08  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.|+|+|-||+||||+|..++..+......+..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI   35 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            6799999999999999999999887664444443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0013  Score=54.89  Aligned_cols=47  Identities=26%  Similarity=0.272  Sum_probs=34.4

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEE
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCF  141 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~  141 (373)
                      ++..+...+...  +.++|.+.|-||+||||++..++..+......+..
T Consensus         7 ~~~~~~~~~~~~--~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVll   53 (279)
T d1ihua2           7 SLSALVDDIARN--EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHL   53 (279)
T ss_dssp             CHHHHHHHHHTT--SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cHHHHHHHhhcC--CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            355666666644  45999999999999999999998877655333333

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.00047  Score=53.77  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++|+|+||+|+|||||++.+..+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999887654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00062  Score=52.98  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+|+.++..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35577999999999999998865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0011  Score=55.24  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             hcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          102 NKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       102 ~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      ..+...+-+|+|.|+.|+|||||+..+...+...+
T Consensus        21 ~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~   55 (286)
T d1odfa_          21 ETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY   55 (286)
T ss_dssp             TTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHh
Confidence            33444467899999999999999999988776543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0037  Score=49.66  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..|+|.|+-|+||||+++.+.+.+......+++.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            6789999999999999999999887664444443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00074  Score=52.42  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             EEEEeccCCcchhHHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .|+|.|++|+||||+|+.++..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.49  E-value=0.00074  Score=56.26  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +.++|+|.|.+|+||||+++.+.+.+...
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            45799999999999999999998877654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.004  Score=51.28  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=26.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc-ccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE-FEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~  142 (373)
                      +.++|.|.+|+|||+|+..++...... -+.+++.
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~  103 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  103 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE
Confidence            679999999999999999999875433 3344443

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0025  Score=53.67  Aligned_cols=30  Identities=37%  Similarity=0.417  Sum_probs=26.1

Q ss_pred             CCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          106 TDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       106 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..+-+|+|.|++|+||||+|+.+...+...
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            346799999999999999999999887644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.34  E-value=0.0013  Score=53.55  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      +|+|.|+.|+|||||+..+.+.....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~   27 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDN   27 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhC
Confidence            68999999999999999998765543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0016  Score=54.14  Aligned_cols=39  Identities=18%  Similarity=-0.011  Sum_probs=29.0

Q ss_pred             HHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364           96 KLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus        96 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ++.+.+.+-. ..+.++|.|++|+|||+|+..++......
T Consensus        32 r~ID~l~Pig-rGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          32 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             HHHHHHSCCB-TTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             eeeeeccccc-CCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            4555665421 22788999999999999999999876544

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.27  E-value=0.0027  Score=54.12  Aligned_cols=117  Identities=19%  Similarity=0.220  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEEeechhhhcccCHHHHHHHHHHHHhCCCCCCC
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFLANVREISKKSGLVFLQKQLISQLLNLPDSGV  173 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (373)
                      ..-+...+..+    +.+.|+|+.|+||||+++.++..+.++ ..++-+.+..+..-....     .. .++.      .
T Consensus       156 ~~~l~~~v~~~----~nili~G~tgSGKTT~l~al~~~i~~~-~rivtiEd~~El~l~~~~-----~~-~~~~------~  218 (323)
T d1g6oa_         156 ISAIKDGIAIG----KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHHK-----NY-TQLF------F  218 (323)
T ss_dssp             HHHHHHHHHHT----CCEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEEESSCCCCCSSCS-----SE-EEEE------C
T ss_pred             HHHHHHHHHhC----CCEEEEeeccccchHHHHHHhhhcccc-cceeeccchhhhhccccc-----cc-ceec------c
Confidence            34444455555    448999999999999999998766443 334444333221100000     00 0000      0


Q ss_pred             cchhhhHHHHHHhhCCCceEEEecccccHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 017364          174 WNVYDGMNMIRSRLRHKKVLLVIDDVIELQQLESLAGKHDWFGIGSRIFITSRDKHL  230 (373)
Q Consensus       174 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~l~~l~~~~~~~~~g~~iliTtR~~~~  230 (373)
                      ...-.....++..++..+-.+|+..+.+.+.+..+. .....+.|  ++.|.|..+.
T Consensus       219 ~~~~~~~~ll~~~lR~~pd~iivgEiR~~ea~~~l~-a~~tGh~g--~~tT~Ha~s~  272 (323)
T d1g6oa_         219 GGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYN-VLCSGHKG--TLTTLHAGSS  272 (323)
T ss_dssp             BTTBCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHH-HHHTTCSC--EEEEECCSSH
T ss_pred             ccchhHHHHHHHHhccCCCcccCCccCchhHHHHHH-HHHhcCCc--EEEEECCCCH
Confidence            001123455677788888899999998777665433 22211112  6777776543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.25  E-value=0.0019  Score=54.30  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=27.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.|+|+|-||+||||++..++..+......+..+
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlI   36 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV   36 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            6788999999999999999998877654444444

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0019  Score=54.25  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=28.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ++++.+.|-||+||||++..++..+..+...+..+
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlv   42 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV   42 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEE
Confidence            58899999999999999999999887664444444

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.0013  Score=51.58  Aligned_cols=22  Identities=41%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVY  129 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~  129 (373)
                      +-+|+|+|+.|+||||+|+.+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999998763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0047  Score=49.91  Aligned_cols=23  Identities=35%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +++.|+|++..||||+++.+.-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            78999999999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0014  Score=51.98  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=22.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+++|+||+|+|||||.+.+.....
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6889999999999999999988643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.09  E-value=0.0014  Score=56.29  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             cCcccchhhHHHHHHHHh-cCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLIN-KGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ...+|.+.....+.-..- .+   ..-|.|.|++|+|||+||+.+..-+
T Consensus         7 ~~I~Gq~~~kral~laa~~~~---~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDPG---IGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGG---GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             hhccCcHHHHHHHHHHHhccC---CCeEEEECCCCccHHHHHHHHHHhC
Confidence            467999876665543332 22   1458999999999999999998743

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.04  E-value=0.0022  Score=55.59  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ...+...||+|+|||.||+.++...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            3558899999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.96  E-value=0.003  Score=50.01  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=23.8

Q ss_pred             EEEEeccCCcchhHHHHHHHHHHhccc
Q 017364          110 MIGICGMGGIGKTTLARVVYDLISHEF  136 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~~~~~f  136 (373)
                      .|+|.|.-|+||||+++.+.+.+..+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g   28 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAG   28 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            588999999999999999999887553

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.93  E-value=0.0022  Score=48.24  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|++|+|||||+..+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.92  E-value=0.004  Score=50.80  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHh
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..++.|.|++|+|||+|+.+++....
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            38999999999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.88  E-value=0.011  Score=52.36  Aligned_cols=48  Identities=23%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             cCcccchhhHHHHHHHHh--------cCCC----CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           85 KELVGLDSRLEKLRFLIN--------KGPT----DVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~--------~~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+.||.++..+.+.-.+.        ....    ...-|.++||+|+|||-||+.++..+
T Consensus        14 ~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHh
Confidence            457777766665554441        1111    13569999999999999999999866

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0045  Score=50.47  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=26.5

Q ss_pred             HHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           99 FLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        99 ~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .+|.-+-....++.|.|++|+|||++|.+++....
T Consensus        28 ~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             HHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             HhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33333333348999999999999999999998654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0024  Score=51.94  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=24.5

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      +++.|+|-|+-|+||||+++.+...+..
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            4689999999999999999999987643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.81  E-value=0.0013  Score=51.73  Aligned_cols=26  Identities=27%  Similarity=0.097  Sum_probs=22.2

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+-+|+|-|.-|+||||+++.+.+.+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999887644

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0025  Score=50.75  Aligned_cols=27  Identities=15%  Similarity=0.110  Sum_probs=23.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      .++.|.|++|+|||+||.+++......
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~~~   50 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQLP   50 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            799999999999999999999875433

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.73  E-value=0.0025  Score=51.46  Aligned_cols=24  Identities=25%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .++.|+|++|+|||+||.+++...
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~   50 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNG   50 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            789999999999999998877653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.70  E-value=0.022  Score=45.42  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +++.|+||+..||||+++.+.-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47899999999999999998764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.64  E-value=0.0027  Score=49.76  Aligned_cols=23  Identities=17%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+.|+|+|.+|+|||||.+.+.+
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHhcC
Confidence            56799999999999999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.63  E-value=0.0032  Score=47.70  Aligned_cols=23  Identities=35%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||||...+...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            34889999999999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.61  E-value=0.011  Score=49.00  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=22.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.|.|++|+|||+++..++..+.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a   60 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWG   60 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhh
Confidence            7899999999999999999987653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.60  E-value=0.0067  Score=45.39  Aligned_cols=25  Identities=40%  Similarity=0.405  Sum_probs=22.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      -+|.+.|.=|+||||+++.+++.+.
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcc
Confidence            6899999999999999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.59  E-value=0.0045  Score=47.43  Aligned_cols=27  Identities=30%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             CCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364          104 GPTDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       104 ~~~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .++..-.|+|+|.+|+|||||+..+..
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            333445688999999999999988754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.58  E-value=0.0063  Score=46.53  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      +..+..++....   ..|+|+|.+|+|||||+..+..
T Consensus         4 ~~~~~~~~~~k~---~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1           4 FTRIWRLFNHQE---HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             HHHHHHHHTTSC---EEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHHHHHhCCCe---EEEEEECCCCCCHHHHHHHHhc
Confidence            345555554332   6688999999999999998875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.56  E-value=0.0062  Score=48.94  Aligned_cols=34  Identities=26%  Similarity=0.354  Sum_probs=27.4

Q ss_pred             EEEEEe-ccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGIC-GMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ++|+|+ |-||+||||++..++..+......+.++
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vlli   36 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   36 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            677776 8999999999999999887665555555

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0032  Score=49.78  Aligned_cols=23  Identities=30%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +.|+|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.54  E-value=0.0054  Score=47.17  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..|+|+|.+|+|||||...+..
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5688999999999999988764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.53  E-value=0.0034  Score=51.05  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=23.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.|.|++|+|||+++..++....
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999998654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0035  Score=47.60  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+++|.+|+|||||+..+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998886

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0028  Score=51.45  Aligned_cols=25  Identities=16%  Similarity=0.110  Sum_probs=22.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      .+++.|.|++|+|||||+.+++...
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3799999999999999999987653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.44  E-value=0.0055  Score=48.83  Aligned_cols=32  Identities=25%  Similarity=0.650  Sum_probs=25.8

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ++.+...|. +    +..++.|.+|+|||||...+..
T Consensus        86 ~~~L~~~l~-~----kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          86 IEELKEYLK-G----KISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             HHHHHHHHS-S----SEEEEECSTTSSHHHHHHHHST
T ss_pred             HhhHHHHhc-C----CeEEEECCCCCCHHHHHHhhcc
Confidence            666777664 3    6788999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.004  Score=47.73  Aligned_cols=22  Identities=32%  Similarity=0.292  Sum_probs=19.3

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999998763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.004  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0077  Score=47.84  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=28.5

Q ss_pred             EEEEEeccC-CcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMG-GIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~-GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.+.|+|.+ |+||||++..++..+..+...+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            578999998 9999999999999988775555555

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0066  Score=46.43  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||||+..+.+.
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46889999999999999998863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0045  Score=47.08  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.26  E-value=0.0045  Score=46.89  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|++.|.+|+|||||+..+.+.
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999999863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=0.0046  Score=47.16  Aligned_cols=22  Identities=32%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+++|.+|+|||||+..+.+.
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4889999999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0059  Score=46.37  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|.|.+|+|||||+..+.+.
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            56889999999999999998763

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.24  E-value=0.0048  Score=47.12  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+|+|||||++.+.+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0049  Score=46.25  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.0078  Score=47.66  Aligned_cols=33  Identities=33%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccc-cceEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEF-EASCF  141 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~  141 (373)
                      +.|+|-|+.|+||||+++.+.+.+.... ..+++
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~   36 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF   36 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            6789999999999999999999876553 33444

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0048  Score=46.99  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||+|+..+++.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.21  E-value=0.0045  Score=48.96  Aligned_cols=20  Identities=40%  Similarity=0.639  Sum_probs=18.0

Q ss_pred             EEEEEeccCCcchhHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVV  128 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~  128 (373)
                      -+|+|+|..|+||||+|+.+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999866

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0048  Score=47.11  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||++.+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999998863

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0053  Score=48.65  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=18.0

Q ss_pred             EEEEeccCCcchhHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVY  129 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~  129 (373)
                      +|+|+|+.|+||||+++.+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            79999999999999998653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.16  E-value=0.0098  Score=47.81  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=27.7

Q ss_pred             EEEEEe-ccCCcchhHHHHHHHHHHhccccceEEEe
Q 017364          109 RMIGIC-GMGGIGKTTLARVVYDLISHEFEASCFLA  143 (373)
Q Consensus       109 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~  143 (373)
                      ++|+|+ +-||+||||++..++..+......+..+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            678888 78999999999999998876654555553

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0042  Score=47.43  Aligned_cols=21  Identities=29%  Similarity=0.613  Sum_probs=18.8

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+|+|||||+..+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0057  Score=46.49  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=19.2

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||+..+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999886

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.14  E-value=0.0052  Score=48.55  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +.|+|.|++|+|||||...+...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999998863

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0051  Score=46.95  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999998864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0064  Score=48.70  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..++..|.|.-|+|||||++.+...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            3689999999999999999998874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0052  Score=47.05  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.2

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||+..+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999999876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0059  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=19.4

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||++.+.+.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998863

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.0055  Score=46.56  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998863

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.08  E-value=0.0053  Score=46.47  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||+..+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.0066  Score=46.61  Aligned_cols=23  Identities=35%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ..|+|+|.+|+|||+|+..+.+.
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45789999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.0056  Score=46.42  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|++.|.+|+|||||+..+++.
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.0057  Score=46.62  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998863

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.04  E-value=0.0059  Score=46.95  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ...|+|+|.+|+|||||++.+++.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.006  Score=46.78  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +..|+|.|.+|+|||||...+.+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            567999999999999999999863

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0077  Score=46.49  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+|+|||+|+..+.+.
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.007  Score=48.20  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=24.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhcc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHE  135 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~  135 (373)
                      ..|+|-|+-|+||||+++.+.+.+..+
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            789999999999999999999887654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0059  Score=46.33  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||+..+.+.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.97  E-value=0.019  Score=47.23  Aligned_cols=34  Identities=18%  Similarity=0.029  Sum_probs=24.9

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.++|.|.+|+|||+|+.........+...+++.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~  101 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQQGQNVICVYV  101 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred             ceEeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence            5689999999999999988665544444444444

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0062  Score=46.23  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||+|+..+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.94  E-value=0.012  Score=48.15  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+.++...+.......-.|+|.|.+|+|||||...++++
T Consensus        17 ~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            344555555554444567889999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.91  E-value=0.0059  Score=46.63  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-|.|.|++|+||||||..+..+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            56899999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.0066  Score=46.50  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=19.2

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||+..+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0058  Score=46.53  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.7

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+|+|||||+..+.+
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            478999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0078  Score=45.79  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=19.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||+|+..+.+.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0072  Score=46.04  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||+|+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999998763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0066  Score=47.01  Aligned_cols=21  Identities=33%  Similarity=0.349  Sum_probs=18.7

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+|+|||||+..+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0071  Score=46.25  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|++.|.+|+|||||+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0029  Score=51.31  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.|+|-|+-|+||||+++.+.+.+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            7899999999999999999887653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.73  E-value=0.0077  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||+..+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999886

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.71  E-value=0.008  Score=45.43  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.0

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|++|+|||||+..+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4778999999999999988763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.0079  Score=46.96  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.7

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||+..+...
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4889999999999999998863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.66  E-value=0.0076  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.309  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||...+.++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.65  E-value=0.0062  Score=46.53  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-|.|.|++|+||||||..+..+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            56889999999999999988763

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0084  Score=45.82  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|+|.+|+|||||+..+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999998876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.64  E-value=0.01  Score=48.07  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .+|+|+|..|+||||+|+.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.61  E-value=0.0078  Score=45.68  Aligned_cols=23  Identities=30%  Similarity=0.276  Sum_probs=20.5

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .-|.|.|++|+||||||..+..+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            56899999999999999888775

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.009  Score=44.84  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||...+.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998853

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0086  Score=46.34  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||+|+..+.+.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4889999999999999998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.58  E-value=0.0089  Score=45.42  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      -.|+|+|.+|+|||||+..+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.54  E-value=0.0091  Score=45.95  Aligned_cols=22  Identities=32%  Similarity=0.280  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|++.|.+|+|||+|+..+.+.
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0086  Score=45.71  Aligned_cols=21  Identities=33%  Similarity=0.552  Sum_probs=18.8

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|++.|.+|+|||||+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.45  E-value=0.0066  Score=46.94  Aligned_cols=21  Identities=38%  Similarity=0.657  Sum_probs=18.7

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      -|+|+|.+++|||||+..+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.43  E-value=0.0076  Score=46.35  Aligned_cols=20  Identities=25%  Similarity=0.524  Sum_probs=18.7

Q ss_pred             EEEeccCCcchhHHHHHHHH
Q 017364          111 IGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~  130 (373)
                      |+|+|.+|+|||||+..+.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.01  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||+|+..+.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=45.22  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+++|.+|+|||||+..+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999876

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.011  Score=44.95  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.3

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+++|..|+|||||+..+++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999998873

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.28  E-value=0.0061  Score=45.79  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||||+..+.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.013  Score=45.45  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|++.|.+|+|||+|+..+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999987654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.0059  Score=46.60  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+|+|||||+..+.+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999987754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.13  E-value=0.011  Score=46.13  Aligned_cols=19  Identities=32%  Similarity=0.471  Sum_probs=17.7

Q ss_pred             EEEEeccCCcchhHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVV  128 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~  128 (373)
                      .|+|.|.+|+|||||+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.10  E-value=0.021  Score=43.78  Aligned_cols=23  Identities=35%  Similarity=0.299  Sum_probs=19.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .-.|+++|.+|+|||||+..+..
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35677999999999999988754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.015  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|++.|.+|+|||||+..+.+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999998874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.06  E-value=0.012  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|.|.+|+|||||+..+.+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999998863

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.97  E-value=0.082  Score=43.46  Aligned_cols=24  Identities=25%  Similarity=0.015  Sum_probs=21.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +.++|.|.+|+|||+|+..+....
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~~   92 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIINQ   92 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEeecCCCCChHHHHHHHHHhH
Confidence            678999999999999998887654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.0095  Score=45.80  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=20.3

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ...|+|+|.+++|||||.+.+..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999988754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=0.015  Score=45.24  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|.|.+|+|||+|+..+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.88  E-value=0.01  Score=45.30  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      -.|+|+|.+|+|||||+..+.+
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4477999999999999998864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.029  Score=48.18  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      ....+...+. +    +++.|+|++|.||||++..+...+
T Consensus       153 Q~~A~~~al~-~----~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         153 QKVAAAVALT-R----RISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             HHHHHHHHHT-B----SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-C----CeEEEEcCCCCCceehHHHHHHHH
Confidence            4444554453 2    789999999999999887766544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.68  E-value=0.019  Score=47.21  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      .++.|+|++|+|||||+..++..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6788999999999999999987754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.64  E-value=0.03  Score=43.34  Aligned_cols=40  Identities=20%  Similarity=0.383  Sum_probs=31.5

Q ss_pred             hHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           93 RLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        93 ~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      -+..+..+|. +..+-..+.|+||++.|||++|..++.-+.
T Consensus        39 Fl~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          39 FLGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            4566666674 445568899999999999999999888763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.0099  Score=45.36  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=8.9

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+|+|||||+..+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988775

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.36  E-value=0.019  Score=45.74  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.4

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ..|+|.|.+|+|||||++.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5689999999999999998754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.17  E-value=0.029  Score=47.55  Aligned_cols=30  Identities=33%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHHHhcccc
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDLISHEFE  137 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~  137 (373)
                      +-.|.|-|+=|+||||+++.+.+.+..+..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~~~   35 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGGSP   35 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccCCC
Confidence            457899999999999999999988765543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.05  E-value=0.05  Score=44.52  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=30.5

Q ss_pred             HHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH
Q 017364           94 LEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI  132 (373)
Q Consensus        94 ~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~  132 (373)
                      +..+..+|....+....+.++|+|+.|||+++..+..-+
T Consensus        90 ~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            445556665554556889999999999999999988865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.96  E-value=0.034  Score=47.08  Aligned_cols=34  Identities=26%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      -.|+|-|.-|+||||+++.+.+.+..+...+.++
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~   39 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLI   39 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence            4589999999999999999998776554444444

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.0098  Score=46.46  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ++.+|+|++|+||||++..+..-+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4567899999999999999987653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.66  E-value=0.015  Score=46.43  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=18.8

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      +..++.|.+|+|||||...+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCccHHHHHHhhcc
Confidence            4567899999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.42  E-value=0.027  Score=47.19  Aligned_cols=22  Identities=27%  Similarity=0.441  Sum_probs=19.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      ++.+|+|++|+|||++..++.-
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5788999999999999887753

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.34  E-value=0.58  Score=36.94  Aligned_cols=51  Identities=18%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ....++.+...+..+.  +....|+|..|+|||.++-..+...-.....+++.
T Consensus        60 Q~~~~~~i~~~~~~~~--~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l  110 (233)
T d2eyqa3          60 QAQAINAVLSDMCQPL--AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL  110 (233)
T ss_dssp             HHHHHHHHHHHHHSSS--CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHHHHHHHhccC--ccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEE
Confidence            3445667777676553  36778999999999999988887655444444443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.16  E-value=0.035  Score=48.50  Aligned_cols=22  Identities=18%  Similarity=0.373  Sum_probs=20.2

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      -.|+|.|.+|+|||||...+.+
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5699999999999999999975

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.12  E-value=0.045  Score=44.96  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=22.2

Q ss_pred             CeEEEEEeccCCcchhHHHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +.|.|+|+|-.|.|||||+..++..
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~   29 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYY   29 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=91.38  E-value=0.066  Score=43.72  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=21.0

Q ss_pred             eEEEEEeccCCcchhHHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|.|+|.|..|.|||||+..+...
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHH
Confidence            367999999999999999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.32  E-value=0.058  Score=42.97  Aligned_cols=23  Identities=26%  Similarity=0.309  Sum_probs=21.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      ++|+|.|-++.|||||+..+...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            67999999999999999998865

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.03  E-value=0.3  Score=37.46  Aligned_cols=47  Identities=15%  Similarity=-0.039  Sum_probs=27.6

Q ss_pred             chhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHH-hccccceEEE
Q 017364           90 LDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLI-SHEFEASCFL  142 (373)
Q Consensus        90 R~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~  142 (373)
                      |+-+.+.+..+...+      +.|+++.|.|||.++..++... ......++++
T Consensus        11 r~~Q~~~~~~~~~~n------~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          11 RIYQEVIYAKCKETN------CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             CHHHHHHHHHGGGSC------EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             CHHHHHHHHHHhcCC------eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            555555555544322      5688999999998766555432 2222334454

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.093  Score=43.08  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=25.8

Q ss_pred             HHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364          100 LINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       100 ~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|..-.+.+.+|+|.|+.+.|||+|+..+++.
T Consensus        24 ~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          24 ILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHcCCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            34444445889999999999999999998863

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=90.82  E-value=0.06  Score=41.04  Aligned_cols=21  Identities=43%  Similarity=0.599  Sum_probs=19.2

Q ss_pred             EEEEeccCCcchhHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .|+|.|.+++|||||+..+.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.54  E-value=0.059  Score=47.10  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .+.+|+|++|+|||++..++.-
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999998864

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.31  E-value=0.072  Score=44.22  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=16.0

Q ss_pred             EEEEeccCCcchhHHH-HHHHHH
Q 017364          110 MIGICGMGGIGKTTLA-RVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa-~~~~~~  131 (373)
                      .+.|.|++|+||||.+ ..+.+-
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHH
Confidence            3678999999999754 444443

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.69  E-value=0.063  Score=45.23  Aligned_cols=25  Identities=36%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..|+|-|.=|+||||+++.+.+...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            4589999999999999999876554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.47  E-value=0.098  Score=43.74  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=16.1

Q ss_pred             EEEeccCCcchhHHH-HHHHHHH
Q 017364          111 IGICGMGGIGKTTLA-RVVYDLI  132 (373)
Q Consensus       111 v~I~G~~GiGKTtLa-~~~~~~~  132 (373)
                      +.|.|++|+||||.+ ..+++.+
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            678899999999755 4444444

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.28  E-value=0.11  Score=37.32  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=18.8

Q ss_pred             CeEEEEEeccCCcchhHHHHHHH
Q 017364          107 DVRMIGICGMGGIGKTTLARVVY  129 (373)
Q Consensus       107 ~~~~v~I~G~~GiGKTtLa~~~~  129 (373)
                      +.++..|+++.|.|||+++-.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            34788899999999999876554

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=88.56  E-value=0.17  Score=44.23  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHh
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      +.+.|.|.+|+|||+++..++....
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~   75 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGL   75 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHH
Confidence            4589999999999999887776544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.01  E-value=0.21  Score=42.10  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=27.1

Q ss_pred             HHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHH
Q 017364           95 EKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus        95 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      +.+..++. ..+..|-|+|.|-.|.|||||+..+...
T Consensus         5 ~~~~~lm~-~~~~IRNI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2           5 DQMRSLMD-KVTNVRNMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             HHHHHHHH-CGGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHhc-CcccCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            33444444 3445788999999999999999998753

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.88  E-value=0.13  Score=36.79  Aligned_cols=34  Identities=15%  Similarity=-0.061  Sum_probs=21.2

Q ss_pred             EEEEEeccCCcchhHHHH-HHHHHHhccccceEEE
Q 017364          109 RMIGICGMGGIGKTTLAR-VVYDLISHEFEASCFL  142 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~  142 (373)
                      +.+.|+++.|.|||..+- .+.......-..++++
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~   42 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVL   42 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeee
Confidence            668899999999997664 3334433332333333

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.82  E-value=0.24  Score=38.22  Aligned_cols=31  Identities=19%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             EEEeccCCcchhHHHHHH-HHHHhccccceEEE
Q 017364          111 IGICGMGGIGKTTLARVV-YDLISHEFEASCFL  142 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~-~~~~~~~f~~~~~~  142 (373)
                      +.|.+|.|+|||+.+... +..+. ....++++
T Consensus        43 ~il~apTGsGKT~~a~l~i~~~~~-~~~~vl~l   74 (202)
T d2p6ra3          43 LLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYV   74 (202)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred             EEEEcCCCCchhHHHHHHHHHHhh-ccCcceee
Confidence            779999999999887443 33333 23345554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.73  E-value=0.21  Score=34.88  Aligned_cols=26  Identities=8%  Similarity=0.008  Sum_probs=23.3

Q ss_pred             EEEEEeccCCcchhHHHHHHHHHHhc
Q 017364          109 RMIGICGMGGIGKTTLARVVYDLISH  134 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~~~~  134 (373)
                      -.|.+.|..|+||+|||+.+...+.+
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999888765

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=2.1  Score=34.32  Aligned_cols=49  Identities=16%  Similarity=0.012  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364           92 SRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus        92 ~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      ..+++|..-+..+.  +....|.|..|+|||-++-..+...-.....+++.
T Consensus        90 ~ai~ei~~d~~~~~--~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m  138 (264)
T d1gm5a3          90 RAHQEIRNDMISEK--PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM  138 (264)
T ss_dssp             HHHHHHHHHHHSSS--CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHhhccC--cceeeeeccccccccHHHHHHHHHHHhcccceeEE
Confidence            34666666666543  24567899999999999988776544333334443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.28  E-value=0.84  Score=35.94  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=21.4

Q ss_pred             EEEeccCCcchhHHHHHHHHHHhccccceEEE
Q 017364          111 IGICGMGGIGKTTLARVVYDLISHEFEASCFL  142 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~  142 (373)
                      +.|++|.|.|||+.+...+-....+...++++
T Consensus        61 ~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          61 FAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             EECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             EEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            88999999999987655544433333444554

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=86.11  E-value=0.19  Score=41.13  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      .|+|+|.+.+|||||...+...
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999988863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.78  E-value=0.21  Score=41.39  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.7

Q ss_pred             EEEEEeccCCcchhHHHHHHHHH
Q 017364          109 RMIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       109 ~~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -.|+|+|.+.+|||||...+...
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            45999999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.66  E-value=0.24  Score=38.47  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.6

Q ss_pred             EEEEeccCCcchhHHHHHHHHH
Q 017364          110 MIGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       110 ~v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      -|+|.|-.+.|||||+.++...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3899999999999999998764

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.45  E-value=0.66  Score=35.79  Aligned_cols=44  Identities=25%  Similarity=0.144  Sum_probs=31.8

Q ss_pred             cCcccchhhHHHHHHHHhcCCCCeEEEEEeccCCcchhHHHHHHHHHHh
Q 017364           85 KELVGLDSRLEKLRFLINKGPTDVRMIGICGMGGIGKTTLARVVYDLIS  133 (373)
Q Consensus        85 ~~~vGR~~~~~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~  133 (373)
                      ..+-=|+.+.+.+..++..+    + ..|.++.|.|||.++..++.+..
T Consensus        67 ~~~~Lr~yQ~eav~~~~~~~----~-~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          67 AEISLRDYQEKALERWLVDK----R-GCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             CCCCCCHHHHHHHHHHTTTS----E-EEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHHHHhCC----C-cEEEeCCCCCceehHHhHHHHhc
Confidence            44556777788777776533    3 45788999999998888776553

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.25  E-value=0.27  Score=41.10  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             EEEeccCCcchhHHHHHHHHH
Q 017364          111 IGICGMGGIGKTTLARVVYDL  131 (373)
Q Consensus       111 v~I~G~~GiGKTtLa~~~~~~  131 (373)
                      |+|+|.+.+|||||...+.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            899999999999999998753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=83.20  E-value=0.28  Score=39.97  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             eEEEEEeccCCcchhHHHHHHHH
Q 017364          108 VRMIGICGMGGIGKTTLARVVYD  130 (373)
Q Consensus       108 ~~~v~I~G~~GiGKTtLa~~~~~  130 (373)
                      .-.++|+|++.+|||||+..+.+
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ceEEEEEecCccchhhhhhhhhc
Confidence            45699999999999999999875

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.95  E-value=2.3  Score=30.96  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=25.9

Q ss_pred             CCCceEEEecccc--------cHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 017364          188 RHKKVLLVIDDVI--------ELQQLESLAGKHDWFGIGSRIFITSRDKH  229 (373)
Q Consensus       188 ~~~~~LlvlDdv~--------~~~~l~~l~~~~~~~~~g~~iliTtR~~~  229 (373)
                      .+.--+||||.+-        +.+.+-+++...|   .+.-+|+|-|+..
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp---~~~evVlTGr~~p  138 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARP---GHQTVIITGRGCH  138 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC---TTCEEEEECSSCC
T ss_pred             cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCC---CCCEEEEECCCCC
Confidence            3445699999762        3445555555443   4678999999764